RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6098
(378 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 173 bits (440), Expect = 1e-52
Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 30/179 (16%)
Query: 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 259
M+ E +T+ V G D +E+ E++E ++ P F LG PKGVL+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 260 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLT 319
LLA+A+A + F +SGS+ V+ F+G G+ VR++F A
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA------------------- 100
Query: 320 ILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 378
++ AP IIF+DEID++G R GG E ++T+ ++L ++DGFE +
Sbjct: 101 ----------KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149
Score = 62.9 bits (153), Expect = 7e-12
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLA+A+A + F +SGS+ V+ F+G G+ VR++F A+
Sbjct: 56 TGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK 101
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 170 bits (431), Expect = 2e-51
Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 30/174 (17%)
Query: 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 264
P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT LARA
Sbjct: 3 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61
Query: 265 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNT 324
VA FI SGS+ V+ F+G G+ VR+LF A
Sbjct: 62 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA------------------------ 97
Query: 325 IVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 378
+ HAP I+F+DEID++G R GG+ E ++T+ +LL ++DGFE
Sbjct: 98 -----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 146
Score = 63.3 bits (154), Expect = 4e-12
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKT LARAVA FI SGS+ V+ F+G G+ VR+LF A+
Sbjct: 53 VGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 98
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 142 bits (359), Expect = 1e-40
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 29/174 (16%)
Query: 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 264
VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLLA+A
Sbjct: 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 60
Query: 265 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNT 324
+A+ + FI + G EL+ + GE VRE+F A
Sbjct: 61 IANECQANFISIKGPELLTMWFGESEANVREIFDKA------------------------ 96
Query: 325 IVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 378
R+ AP ++F DE+DSI +R + G R + ++L ++DG K
Sbjct: 97 -----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 145
Score = 47.1 bits (111), Expect = 1e-06
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARC 58
GKTLLA+A+A+ + FI + G EL+ + GE VRE+F AR
Sbjct: 52 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 98
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 112 bits (279), Expect = 3e-29
Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 32/162 (19%)
Query: 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 268
Y+ VGG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+
Sbjct: 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 61
Query: 269 TECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCN 328
T F ++G E++ K GE +R+ F A
Sbjct: 62 TGAFFFLINGPEIMSKLAGESESNLRKAFEEA---------------------------- 93
Query: 329 FREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370
++AP+IIF+DE+D+I R +R + +LL
Sbjct: 94 -EKNAPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTL 131
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 105 bits (262), Expect = 2e-26
Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 38/181 (20%)
Query: 203 EKVPDSTYEMVGGLDNQIKEIKE--VIELPVKHPELFDALGIAQPKGVLL-YGPPGTGKT 259
+ G + + EL P + + G G+++ G +GKT
Sbjct: 78 DGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKT 137
Query: 260 LLARAVA--HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSL 317
L A+ + + V E + + + + V ++
Sbjct: 138 PLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML---------------- 181
Query: 318 LTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377
+I +D + ++ + + + G R +LL+ + A+
Sbjct: 182 ---------------QHRVIVIDSLKNVIGAAGGNTTSGGIS--RGAFDLLSDIGAMAAS 224
Query: 378 K 378
+
Sbjct: 225 R 225
Score = 48.1 bits (114), Expect = 6e-07
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 12 SGKTLLARAVA--HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
SGKT L A+ + + V E + + + + V ++
Sbjct: 134 SGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML 181
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 85.1 bits (210), Expect = 5e-19
Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 42/291 (14%)
Query: 100 KEQNLRRLQ--AQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDK--KKVLVKVHPEG 155
K+ + + + A + + + +L L+ + +K K K +
Sbjct: 1 KQVSWKLVTEYAMETKCDDVLLLLGMYLEFQYSF-EMCLKCIKKEQPSHYKYHEKHYANA 59
Query: 156 K-FVVDIDKNIDINDVTPNCRVALRNESYTLHKI--LPNKVDPLVSLMMVEKVPDSTY-- 210
F ++ R +S L + L N+ + L+ M + +
Sbjct: 60 AIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADI 119
Query: 211 ----EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 266
V L + ++ V+ +K I + + L GP +GKT LA A+
Sbjct: 120 EEWMAGVAWLHCLLPKMDSVVYDFLKC----MVYNIPKKRYWLFKGPIDSGKTTLAAALL 175
Query: 267 HHTECTFIRVSGSELVQKF-IGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
+ V+ F +G +F
Sbjct: 176 ELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVK-----------------------G 212
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
PS ++ +D++ S + +
Sbjct: 213 TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTM 263
Score = 44.3 bits (104), Expect = 1e-05
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKF-IGEGSRMVRELFVMARCKGSSRGTEFFTM 70
SGKT LA A+ + V+ F +G +F + G
Sbjct: 165 SGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQ 224
Query: 71 DVDEA 75
++
Sbjct: 225 GINNL 229
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 69.1 bits (168), Expect = 9e-14
Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 29/170 (17%)
Query: 211 EMVGGLDNQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
+ + G + + + + + +L + L PK +L+ GP G GKT +AR +A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 270 ECTFIRVSGSELVQKFIG--EGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVC 327
FI+V ++ + E ++R+L A
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA------------------------GGA 109
Query: 328 NFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377
I+F+DEID I SG D + +LL ++G +
Sbjct: 110 IDAVEQNGIVFIDEIDKICKKG--EYSGADVSREGVQRDLLPLVEGSTVS 157
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 63.8 bits (154), Expect = 3e-12
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271
++ G+ + V++ + VLL GPP +GKT LA +A +
Sbjct: 7 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 66
Query: 272 TFIRVSGSELVQKFIGEGSRM 292
FI++ + + F
Sbjct: 67 PFIKICSPDKMIGFSETAKCQ 87
Score = 29.1 bits (64), Expect = 0.68
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
SGKT LA +A + FI++ + + F + K S+ + D
Sbjct: 51 SGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK--SQLSCVVVDD 108
Query: 72 VDEAIKS 78
++ +
Sbjct: 109 IERLLDY 115
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 62.7 bits (151), Expect = 1e-11
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 220 IKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 279
+ + +E ++ + P LL G PG+GKT L A+ T+ I +
Sbjct: 12 ENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 66
Query: 280 ELVQ---KFIGEGSRMVRELFVMA 300
Q F +++
Sbjct: 67 TFKQQHPNFDELVKLYEKDVVKHV 90
Score = 39.2 bits (90), Expect = 5e-04
Identities = 10/74 (13%), Positives = 17/74 (22%), Gaps = 7/74 (9%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQ---KFIGEGSRMVRELFVMARCKGSSRGTEFF 68
SGKT L A+ T+ I + Q F +++
Sbjct: 43 SGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVT----PYSNRMT 98
Query: 69 TMDVDEAIKSSEGF 82
+
Sbjct: 99 EAIISRLSDQGYNL 112
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 54.8 bits (130), Expect = 5e-09
Identities = 16/162 (9%), Positives = 44/162 (27%), Gaps = 11/162 (6%)
Query: 215 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 274
+ + + + + + + G G GKT LA+
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNMI----YGSIGRVGIGKTTLAKFTVKRVSEAAA 75
Query: 275 RVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAP 334
+ + + + + + + + + E+
Sbjct: 76 KEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDN--LYVENHY 133
Query: 335 SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
++ +DE S+ SS + E T+L + ++ +
Sbjct: 134 LLVILDEFQSMLSSPRIAA-----EDLYTLLRVHEEIPSRDG 170
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 53.8 bits (128), Expect = 7e-09
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 268
T + G + ++++ +E E + +LL+GPPG GKT LA +AH
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKE--------PLEHLLLFGPPGLGKTTLAHVIAHE 58
Query: 269 TECTFIRVSGSELVQK 284
SG + +
Sbjct: 59 LGVNLRVTSGPAIEKP 74
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 53.7 bits (127), Expect = 9e-09
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 198 SLMMVEKVPDSTY--EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 255
++++ + V +Y + + + Q++++ ++ +++P L G PG
Sbjct: 1 AIVVDDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPG 53
Query: 256 TGKTLLARAVAHHTECT----FIRVSGSELVQKFIGEGSRMVRELFVMA 300
TGKT+ R + + F+ ++G G
Sbjct: 54 TGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP 102
Score = 29.0 bits (63), Expect = 0.97
Identities = 13/124 (10%), Positives = 34/124 (27%), Gaps = 7/124 (5%)
Query: 12 SGKTLLARAVAHHTECT----FIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEF 67
+GKT+ R + + F+ ++G G R +
Sbjct: 54 TGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG---LSRDE 110
Query: 68 FTMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQL 127
F + E ++ + + + L + L + + + ++ +
Sbjct: 111 FLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 170
Query: 128 LQEQ 131
L
Sbjct: 171 LNNL 174
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 51.7 bits (122), Expect = 3e-08
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE----LFDALGIAQPKGVLLYGPPG 255
+ K + + V G + ++K + + G + +LYGPPG
Sbjct: 3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG 62
Query: 256 TGKTLLARAVAHHTECTF 273
GKT A VA
Sbjct: 63 IGKTTAAHLVAQELGYDI 80
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 49.0 bits (116), Expect = 5e-07
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGSRMVRELFVMASL 302
PK +L+ GP G GKT +AR +A FI+V ++ + ++G+ + +++
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAM 107
Query: 303 KK 304
K
Sbjct: 108 KL 109
Score = 31.3 bits (70), Expect = 0.19
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQ 39
GKT +AR +A FI+V ++ +
Sbjct: 60 VGKTEIARRLAKLANAPFIKVEATKFTE 87
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 46.9 bits (110), Expect = 1e-06
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 268
+ + G +N K++ +E E+ D + LL GPPG GKT LA +A
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKTTLAHIIASE 58
Query: 269 TECTFIRVSGSELVQKF 285
+ SG LV++
Sbjct: 59 LQTNIHVTSGPVLVKQG 75
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 40.8 bits (94), Expect = 9e-05
Identities = 13/71 (18%), Positives = 24/71 (33%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKL 305
K V + G +GK++L +A T G E V + +G + ++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 306 AFAHHPLLFWS 316
+ S
Sbjct: 68 QRYIDYAVRHS 78
Score = 28.5 bits (62), Expect = 0.88
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARC 58
SGK++L +A T G E V + +G + ++
Sbjct: 18 SGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMA 64
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 40.5 bits (93), Expect = 2e-04
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 224 KEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281
E+I L L LG G L+G TGK+ L +A + G
Sbjct: 11 SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGK 70
Query: 282 VQKFIGEGSRMVRELFVMA 300
EG+ L +A
Sbjct: 71 CLYIDTEGTFRPVRLVSIA 89
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 40.7 bits (94), Expect = 2e-04
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 247 GVLLYGPPGTGKTLLARAVA 266
GVL++G GTGK+ RA+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALA 49
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 40.3 bits (93), Expect = 2e-04
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 12/149 (8%)
Query: 234 PELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHH---TECTFIRVSGSELVQKFIGE 288
L + G K +L G GTGKTLL + + I + E + +
Sbjct: 13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRN 72
Query: 289 GSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSS 348
+ M L L L I + P+ I +D + ++
Sbjct: 73 AYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL-QIIKSEINDFKPARIAIDSLSALAR- 130
Query: 349 RIESGSGGDSEVQRTMLELLNQLDGFEAT 377
++ ++ ++ + E T
Sbjct: 131 -----GVSNNAFRQFVIGVTGYAKQEEIT 154
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 297
+LL G PG+GK+ +A A+A+ + +L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQS 56
Score = 29.5 bits (65), Expect = 0.43
Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 8/136 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG-------SRMVRELFVMARCKGSSRG 64
SGK+ +A A+A+ + +L S + + + R
Sbjct: 15 SGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRY 74
Query: 65 TE-FFTMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRE 123
+ + + +D ++ + + ++ + + R + + + ++ +
Sbjct: 75 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVAD 134
Query: 124 ELQLLQEQGSYVGEVV 139
+ G++ V+
Sbjct: 135 LHSQFADLGAFEHHVL 150
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 40.2 bits (92), Expect = 2e-04
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
V+K + + + +K + + P P L LLYGP GTGK
Sbjct: 2 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 49
Query: 262 ARAVAHHTECTFI 274
A+ +
Sbjct: 50 CMALLESIFGPGV 62
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 38.8 bits (89), Expect = 3e-04
Identities = 9/97 (9%), Positives = 24/97 (24%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
+ ++L G GK+ + R + ++ L++ + + A
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDE 341
L + + R +
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGA 99
Score = 25.8 bits (55), Expect = 7.3
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIG 43
+GK+ + R + ++ L++
Sbjct: 14 AGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 39.4 bits (90), Expect = 4e-04
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 225 EVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 282
E+I++ EL L G ++G TGKT + +A + R G
Sbjct: 1 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 60
Query: 283 QKFIGEGSRMVREL 296
EG+ L
Sbjct: 61 MYIDTEGTFRPERL 74
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 37.4 bits (85), Expect = 0.001
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTF 273
+L+ PG G L A++ + C
Sbjct: 24 HHALLIQALPGMGDDALIYALSRYLLCQQ 52
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 37.4 bits (85), Expect = 0.002
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 12/162 (7%)
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
++ K V + E LG +G TGKT L+ + +
Sbjct: 11 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 70
Query: 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSL-------LTILTNTIVCNF-- 329
+ E + L +A + L + + F
Sbjct: 71 GGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHE 130
Query: 330 REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371
++ +D I ++ G G +E Q+ + ++L++L
Sbjct: 131 EAGIFKLLIIDSIMALFRVDFS-GRGELAERQQKLAQMLSRL 171
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 37.0 bits (84), Expect = 0.002
Identities = 13/107 (12%), Positives = 32/107 (29%), Gaps = 7/107 (6%)
Query: 230 PVKHPELF-------DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 282
P + + F + L + L+ G TGK+ + + + +I + +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 283 QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNF 329
++ + EL + ++ I+ F
Sbjct: 67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKF 113
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 36.1 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
+ V L GPPG GKT L + + + + V G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 35.8 bits (82), Expect = 0.004
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 218 NQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275
+Q++ +K +IE ++ +L+ G + ++ + + E +
Sbjct: 1 DQLETLKRIIEK-------------SEGISILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 36.2 bits (82), Expect = 0.004
Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 14/136 (10%)
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
K+ + + L LG ++G G+GKT LA +A +
Sbjct: 10 KKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL 69
Query: 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFW------------SLLTILTNTIV 326
+ V E + + +A + L + +
Sbjct: 70 NGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKE 129
Query: 327 CNFREHAPSIIFMDEI 342
+ ++ +D +
Sbjct: 130 LLNTDRPVKLLIVDSL 145
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 35.6 bits (82), Expect = 0.006
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTF 273
VL+ G G GK ++AR + ++ +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSK 51
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.1 bits (79), Expect = 0.008
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 220 IKEIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHH 268
+K+ V +L EL LG G G+GKT + +
Sbjct: 7 LKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 35.6 bits (81), Expect = 0.009
Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 23/134 (17%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLK 303
+LL GP G+GKTL+A+ +A H + G V
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS--DATSLTEAGYVGEDVE--------- 115
Query: 304 KLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363
++LT L N ++ I+F+DEID I D +
Sbjct: 116 ------------NILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGV 163
Query: 364 MLELLNQLDGFEAT 377
LL ++G
Sbjct: 164 QQALLKIVEGSLVN 177
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 34.6 bits (78), Expect = 0.012
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 222 EIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHH 268
E + + ++ D P G L+ G GTGKTL + ++
Sbjct: 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 49
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 34.6 bits (78), Expect = 0.014
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 16/148 (10%)
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKGV-LLYGPPGTGKTLLARAVAHH------TECTF 273
K I + P L L V L P G GK++LA +A
Sbjct: 4 KPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVG 63
Query: 274 IRVSGSELVQKFIGEGSRMVRELFVMA---SLKKLAFAHHPLLFWSLLTILTNTIV---- 326
+G + + + L + S ++ LL L+ L N +
Sbjct: 64 ELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWF 123
Query: 327 --CNFREHAPSIIFMDEIDSIGSSRIES 352
++ +D + +
Sbjct: 124 DGLKRAAEGRRLMVLDTLRRFHIEEENA 151
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 33.9 bits (76), Expect = 0.014
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRV 276
+L G G+GK+ +A VAH F+
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDG 37
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 34.1 bits (77), Expect = 0.015
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 245 PKGV--LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASL 302
PKGV +L GPPG GK A +A + + + ++++ + GS + ++L
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL--ATGDMLRAMVASGSELGKKLKATMDA 58
Query: 303 KKLAFAHHPLLFW 315
KL L
Sbjct: 59 GKLVSDEMVLELI 71
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 33.9 bits (76), Expect = 0.016
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276
+ + L GP G GK+ + R +A F
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 33.7 bits (76), Expect = 0.017
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277
A P V++ G P +GK + + I
Sbjct: 1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAG 35
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 34.2 bits (78), Expect = 0.017
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 10/133 (7%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVS-GSELVQKFIGEGSRMVRELF--VMASLKK 304
L+ PP GKT+L + +A L+ + E + M R + V+AS
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS--- 102
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFREHA-PSIIFMDEIDSIG-SSRIESGSGGDSEVQR 362
P + + EH II +D I + + + G
Sbjct: 103 --TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 160
Query: 363 TMLELLNQLDGFE 375
L++ F
Sbjct: 161 VDANALHRPKRFF 173
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 33.4 bits (75), Expect = 0.019
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 244 QPKG--VLLYGPPGTGKTLLARAVAHHTECTFI 274
QPKG +L+ G PGTGKT +A +A +
Sbjct: 2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.4 bits (75), Expect = 0.020
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFI----RVSGSELVQKFIGEGSRMVRELFVMASLK 303
+LL G PG GKT L + +A + +I +L + E + + +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 66
Query: 304 KLAFAHHP 311
Sbjct: 67 DNQMREGG 74
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 33.5 bits (75), Expect = 0.023
Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 13/137 (9%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFI--------RVSGSELVQKFIGEGSRMVRELFVM 299
++ GP G GK+ + +A + + V G E + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 300 ASLKKLAFAHHPLLFWSLLTI----LTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSG 355
++ L + +L + L T+ + I + R
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA-LRK 123
Query: 356 GDSEVQRTMLELLNQLD 372
D ++ LEL+ + +
Sbjct: 124 KDEQMGERCLELVEEFE 140
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 33.3 bits (75), Expect = 0.028
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI---GEGSRMVRELFVMASLKK 304
+ G PG+GK ++ + H E + S +L++ + E + + L
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHL--SSGDLLRDNMLRGTEIGVLAKTFIDQGKLIP 66
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSI 345
+L N ++ F P +D I
Sbjct: 67 DDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI 107
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 33.0 bits (75), Expect = 0.035
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 2 LKPLHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGE--GSRMVRELFVMARCK 59
LK P W + + + F+ VS L + ++G + + EL ++
Sbjct: 116 LKVYTPAWEKDPYQYMLEIIKLGFKVVFVAVSAYGLNESWLGRELNYKNLEELKKLSEKY 175
Query: 60 GSS---RGTEFFTMDVD 73
G G EF T +D
Sbjct: 176 GIHIAGEGGEFETFVLD 192
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 32.6 bits (73), Expect = 0.041
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFI 274
+ + + G G G T + R +A F+
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 32.6 bits (73), Expect = 0.046
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276
++P V + G PG+GK + +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 32.9 bits (74), Expect = 0.050
Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 244 QPKGVLLY-GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASL 302
+P G L+ GP G GKT + ++ +R SE +++ SR+ + A
Sbjct: 50 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER--HTVSRL-----IGAPP 102
Query: 303 KKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362
+ F LL +++ ++ + E A +F + + + + +G ++ +
Sbjct: 103 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRN 162
Query: 363 TML 365
+L
Sbjct: 163 VVL 165
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.2 bits (72), Expect = 0.052
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFI 274
K ++ G G+GK+ LARA+A + F+
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 32.4 bits (72), Expect = 0.053
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIR 275
+ L G +GK +ARA+ R
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGGR 36
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.1 bits (72), Expect = 0.055
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
P+ V+ G PG GK+ + +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 47
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 32.3 bits (72), Expect = 0.066
Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 252 GPPGTGKTLLARAVAHHTECTFIRVSGS---ELVQKFIGEGSRMVRELFVMASLKKLAFA 308
GP +GK+ +A+ +A T++ +G+ + + ++A L + +
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD-TGAMYRAATYMALKNQLGVEEVEALLALLDQHPIS 68
Query: 309 HHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349
L + + + + + I +I R
Sbjct: 69 FGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVR 109
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 31.9 bits (71), Expect = 0.069
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 274
PK VL+ G PG+GK+ + R +A +
Sbjct: 2 PKAVLV-GLPGSGKSTIGRRLAKALGVGLL 30
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 32.1 bits (73), Expect = 0.069
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 241 GIAQPKGVLLYGPPGTGKTLLARAVAH 267
G + ++ GP TGK+ + H
Sbjct: 49 GTPKKNCLVFCGPANTGKSYFGMSFIH 75
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 31.8 bits (71), Expect = 0.074
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVREL 296
++L G P GK A+ + I S ++++ + GS + ++
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQI--STGDMLRAAVKSGSELGKQA 49
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 31.9 bits (71), Expect = 0.081
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 11/108 (10%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAF 307
+++ G PG GKT L + + I E+ + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 308 AHHPLLFWSLLTI-----------LTNTIVCNFREHAPSIIFMDEIDS 344
+ + ++ +I +DEI
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 31.6 bits (70), Expect = 0.094
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275
+ V L G G GKT ++ A+ + C I
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIP 49
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.0 bits (69), Expect = 0.10
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 4/97 (4%)
Query: 248 VLLYGPPGTGKTL-LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLA 306
L+ P G+GK+ + A A + F + M + V +++
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG---AYMSKAHGVDPNIRTGV 67
Query: 307 FAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEID 343
+ T A II DE
Sbjct: 68 RTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECH 104
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 31.5 bits (70), Expect = 0.10
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 274
+ + K + + G PG+GK + T +
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL 37
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 31.5 bits (70), Expect = 0.11
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAF 307
++L GPPG GK A + + + ++++ I +G+++ E + L
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHL--ATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 62
Query: 308 AHHPLLFW 315
+
Sbjct: 63 DDIMVNMI 70
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 31.2 bits (69), Expect = 0.14
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFI 274
+ + GP G GK L +A+A + +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLL 32
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein
Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 29.7 bits (67), Expect = 0.16
Identities = 7/44 (15%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 89 KIEELQLIVAEKEQNLRRLQ-AQRNELNAKVRMLREELQLLQEQ 131
++EE + ++ + + +R + R + ++R ++E+ L+
Sbjct: 39 QLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 82
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.2 bits (69), Expect = 0.17
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 216 LDNQIKEIKEVIELPVKHPELFDALGIAQPKG-VLLYGPPGTGKTLLARAVAHHTECTFI 274
+ + + V L + D A+ +++ G GK+ R A
Sbjct: 5 IREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64
Query: 275 RVSG 278
+ G
Sbjct: 65 KKVG 68
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 31.2 bits (69), Expect = 0.17
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 249 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFA 308
L YGPPGTGKT A+ + S + G +VRE + ++
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 96
Query: 309 HHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSI 345
L N+ II +DE DS+
Sbjct: 97 SKHDLE-------------NYPCPPYKIIILDEADSM 120
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.1 bits (69), Expect = 0.17
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
P +++ G P GKT +++ + + +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 31.3 bits (70), Expect = 0.18
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTE 270
+ L+G G+GK+++A ++
Sbjct: 47 LFLHGRAGSGKSVIASQALSKSD 69
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.3 bits (67), Expect = 0.22
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFI 274
VLL GPPG GK A +A I
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQI 29
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.3 bits (67), Expect = 0.23
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRV 276
+ GTGKT L + + IR
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRP 33
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.0 bits (66), Expect = 0.26
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 3/112 (2%)
Query: 242 IAQPKGVLLYGPPGTGKTLLA-RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 300
+ + +L PG GKT + +R + + E L V
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 301 SLKKLAFAHHPLLFWSLLT--ILTNTIVCNFREHAPSIIFMDEIDSIGSSRI 350
+ + + LT ++ R +I MDE + + I
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASI 115
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.9 bits (66), Expect = 0.31
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFI 274
++L G PG GK A + I
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHI 29
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.7 bits (65), Expect = 0.37
Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 18/149 (12%)
Query: 245 PKGVLLYGPPGTGKTLLARA----------VAHHTECTFIRVSGSELVQKFIGEGSRMVR 294
K +L G PG+GK+ AR + I K+ + +V
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 295 ELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIE--- 351
+ + L T L + A + E E
Sbjct: 62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVK 121
Query: 352 -----SGSGGDSEVQRTMLELLNQLDGFE 375
+V R+M + + + G
Sbjct: 122 RNSKRGTKAVPIDVLRSMYKSMREYLGLP 150
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 30.1 bits (67), Expect = 0.39
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 29/112 (25%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
L G G GKT +AR +A C + V + ++
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD----------------NCRE 77
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFRE------HAPS-----IIFMDEIDSI 345
+ L + + T V + R+ +AP+ + +DE+ +
Sbjct: 78 IEQGRFVDLIE--IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 127
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.6 bits (65), Expect = 0.40
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFI 274
+ + G PG GK + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHL 37
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.5 bits (66), Expect = 0.44
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHH------TECTFIRVSGSELV 282
GVLL G G GK+ A + + + I G+ L
Sbjct: 16 VGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLF 58
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 29.6 bits (65), Expect = 0.45
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 274
P V + G PG GK + T +
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 30
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus
[TaxId: 274]}
Length = 385
Score = 30.2 bits (67), Expect = 0.45
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 23 HHTECTFIRVSGSELVQKFIGEGSRMVRELF-----VMARCKGSSRGTEFFTMDVDEAIK 77
E I + E +G + + E ++A+ KG+ R EA++
Sbjct: 277 ADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGTVRSLAPI--SAVEALR 334
Query: 78 SSEG 81
S+E
Sbjct: 335 SAED 338
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.3 bits (64), Expect = 0.50
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 216 LDNQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 274
L ++I + K ++ + + LGI G +GKT LA ++ I
Sbjct: 3 LRDRIDFLCKTILAIKTAGRLV---LGID--------GLSRSGKTTLANQLSQTLREQGI 51
Query: 275 RVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSL 317
V + + R L + L
Sbjct: 52 SVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLF 94
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 29.4 bits (65), Expect = 0.51
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHH 268
+ + L G +GK+ LA + H
Sbjct: 23 RGLTIWLTGLSASGKSTLAVELEHQ 47
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 27.9 bits (62), Expect = 0.54
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 90 IEELQLIVAEKEQNLRRLQAQRNELNAKVRMLR 122
I+ ++ +Q++ L+ Q L +VR L
Sbjct: 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 28.7 bits (64), Expect = 0.64
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 89 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQE-QGSYVGEVVKPM-DKKK 146
+ E+ + + + +Q Q + A + L + L + QG E + P+
Sbjct: 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSF 61
Query: 147 VLVKVHPEGKFVVDIDKNI 165
+ ++ + ++ + +
Sbjct: 62 IKAELKDTSEVIMSVGAGV 80
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 29.5 bits (65), Expect = 0.68
Identities = 14/134 (10%), Positives = 42/134 (31%), Gaps = 22/134 (16%)
Query: 88 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV 147
+ EEL ++ L + Q + N + + L + L+ G + +V
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR------GNI-------RV 49
Query: 148 LVKVHP---------EGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVS 198
++ P + + +++ + + + + ++ ++
Sbjct: 50 FCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI 109
Query: 199 LMMVEKVPDSTYEM 212
MV + S +
Sbjct: 110 FEMVSPLIQSALDG 123
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 29.2 bits (65), Expect = 0.72
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 27/137 (19%)
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280
KE++ I++ L + LL G G GKT +A +A
Sbjct: 25 KELERAIQV----------LCRRRKNNPLLVGESGVGKTAIAEGLAWR------------ 62
Query: 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMD 340
+VQ + E + LA + F ++ + SI+F+D
Sbjct: 63 IVQGDVPEVMADCTIYSLDIG-SLLAGTKYRGDFEKRFKA----LLKQLEQDTNSILFID 117
Query: 341 EIDSIGSSRIESGSGGD 357
EI +I + SG D
Sbjct: 118 EIHTIIGAGAASGGQVD 134
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 0.86
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276
K V++ G PG G T ++ + +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 28.3 bits (62), Expect = 1.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFI 274
++L G PG GK A + I
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHI 29
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 28.7 bits (64), Expect = 1.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 248 VLLYGPPGTGKTLLARAVAH 267
+ L+GP TGKT +A A+AH
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 27.8 bits (62), Expect = 1.4
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 102 QNLRRLQAQRNELNAKVRMLREELQLLQEQ 131
Q + L+ +R +++ + +LQ L Q
Sbjct: 2 QECQNLEVERQRRLERIKQKQSQLQELILQ 31
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.5 bits (63), Expect = 1.4
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 267
+EI+ VI++ L +L G PG GKT + +A
Sbjct: 29 EEIRRVIQI----------LLRRTKNNPVLIGEPGVGKTAIVEGLAQ 65
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.0 bits (62), Expect = 1.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHH 268
GVL+ G G GK+ A +
Sbjct: 16 VGVLITGDSGIGKSETALELIKR 38
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 26.4 bits (58), Expect = 1.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 101 EQNLRRLQAQRNELNAKVRMLREELQ 126
E + R+ Q ++L + R L+ +L+
Sbjct: 53 EDSDRKAVHQIDQLQREQRHLKRQLE 78
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.6 bits (61), Expect = 1.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHH 268
GVL+ G G GK+ A +
Sbjct: 15 LGVLITGDSGVGKSETALELVQR 37
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.4 bits (58), Expect = 1.7
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 104 LRRLQAQRNELNAKVRMLREELQLLQEQ 131
+ +QA+ +L ++ +LR+ + L+ +
Sbjct: 54 ILSVQAEEQKLISEEDLLRKRREQLKHK 81
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.3 bits (60), Expect = 1.9
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 279
V L G G GKT L R + S +
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPT 67
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.7 bits (60), Expect = 1.9
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276
K ++ G PG GK+ + V + I
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 2.6
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 219 QIKEIKEVIELPVKHPELFDALGIAQPK-----GVLLYGPPGTGKTLLARAVA 266
+I ++ + + + G+ P+ +L+ G GTGK++L R +A
Sbjct: 19 RIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA 71
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 2.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHH 268
+ + VL+ G G GKT + +
Sbjct: 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 27.4 bits (60), Expect = 2.7
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 23/104 (22%)
Query: 244 QPKGVLLY-GPPGTGKTLLARAVAHH---TECTFIRVSGSELVQKFIGEGSRMVRELFVM 299
+P G L+ GP G GKT LA+ +A TE IR+ +E ++K
Sbjct: 51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH-------------- 96
Query: 300 ASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEID 343
++ +L A + + LT + R S+I DEI+
Sbjct: 97 -AVSRLIGAPPGYVGYEEGGQLTEAV----RRRPYSVILFDEIE 135
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 27.4 bits (59), Expect = 3.1
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 248 VLLYGPPGTGKT-LLARAVAHHTE-----------CTFIRVSGSELVQKFIGEGSRMVRE 295
L+ G+GKT ++ +AH TF + E+ + V +
Sbjct: 17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKE--------RVGQ 68
Query: 296 LFVMASLKKLAFAHHPLLFWSLL 318
+ L + L ++
Sbjct: 69 TLGRKEARGLMISTFHTLGLDII 91
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 3.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 242 IAQPKGVLLYGPPGTGKTL 260
+ + ++ PG GKT
Sbjct: 6 FRKKRLTIMDLHPGAGKTK 24
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.7 bits (58), Expect = 3.6
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277
Q ++ P G GK+ L +A+ +VS
Sbjct: 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVS 34
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.8 bits (58), Expect = 3.6
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHH 268
+P + + G +GK+ + +
Sbjct: 1 EPFLIGVSGGTASGKSSVCAKIVQL 25
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 26.7 bits (59), Expect = 3.7
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 69 TMDVDEAIKSSEGFKPYYVTKIEELQ--------LIVAEKEQNLRRLQAQRNELNAKVRM 120
M ++ IKS E + Y K + LQ + ++++Q L+ L+ K +
Sbjct: 18 VMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKE 77
Query: 121 LREELQLLQEQGSYV 135
+ ++ L
Sbjct: 78 VVHKIIELLNVTELT 92
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 26.8 bits (58), Expect = 3.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281
+L GPPG GKT A A+A R + EL
Sbjct: 48 LLFAGPPGVGKTTAALALARELFGENWRHNFLEL 81
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 26.6 bits (59), Expect = 4.3
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 297
+ L+G G GKT+L + ++ + G V +GE +R +L+
Sbjct: 71 IGLFGGAGVGKTVLIMELINNV----AKAHGGYSVFAGVGERTREGNDLY 116
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 270
Score = 26.7 bits (59), Expect = 4.6
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 84 PYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM 120
Y T I + + E+ L L+ + N L+ ++ M
Sbjct: 226 DDYQTPITNSVTVRQDLERQLGELREEFNALSQEIAM 262
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 26.4 bits (57), Expect = 5.0
Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 26/187 (13%)
Query: 217 DNQIKEIKEVIELPVKHPELFDALGI---AQPKGVLLYGPPGTGKTLLARAVAHHTECTF 273
D +KE E V P + + + P G GKT A++
Sbjct: 27 DFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKG 86
Query: 274 IRVSGSELVQKFIGEGSRMVRELFVMASLK---------------KLAFAHHPLLFWSLL 318
R + + + +R+ A + + L + ++
Sbjct: 87 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIV 146
Query: 319 TILTNTIVCNFREHAP-SIIFMDEIDSI-----GSSRIESGSGGDSEVQRTMLELLN--Q 370
T + ++RE IF+D++D+I ++ G +++
Sbjct: 147 ITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGC 206
Query: 371 LDGFEAT 377
L AT
Sbjct: 207 LMVSTAT 213
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.5 bits (57), Expect = 5.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTE 270
V+ G G+GKT L + E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLE 25
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 86
Score = 25.1 bits (55), Expect = 5.2
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 91 EELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQ 131
E L+ + ++L ++ + ++ +L ++LQ L
Sbjct: 45 ENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAH 85
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 26.5 bits (57), Expect = 5.5
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 106 RLQAQRNELNAKVRMLREELQLLQEQ 131
+N + +V L++ + +EQ
Sbjct: 323 VNDPSKNVSSKEVARLKKLVSYWKEQ 348
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.2 bits (57), Expect = 6.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRV 276
++ GP G GKTL +A R+
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRI 57
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.1 bits (56), Expect = 6.2
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAF 307
+++ GP GTGK+ L + + +F S GE + + K +
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 308 AH---HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSI 345
+ F T V + + I ++ +
Sbjct: 64 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGV 104
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 26.2 bits (57), Expect = 6.3
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 89 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQ 131
++E + +A K Q +L + + R+++ E+Q LQ +
Sbjct: 259 LLKEQERTLALKLQEQEQLLKEG--FQKESRIMKNEIQDLQTK 299
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 26.1 bits (56), Expect = 6.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTF 273
+++ G PG GKT +AH
Sbjct: 39 MIISGMPGIGKTTSVHCLAHELLGRS 64
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 25.8 bits (56), Expect = 7.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAHH 268
L G G+GKT A +A +
Sbjct: 9 DRNLWFLVGLQGSGKTTTAAKLALY 33
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 26.1 bits (56), Expect = 7.2
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 248 VLLYGPPGTGKT-LLARAVAH 267
+L+ G+GKT +L +A+
Sbjct: 27 LLIMAGAGSGKTRVLTHRIAY 47
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.9 bits (55), Expect = 7.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 238 DALGIAQPKGVLLYGPPGTGKTLLA 262
+ L+ P G GKTL+A
Sbjct: 16 VIYAKCKETNCLIVLPTGLGKTLIA 40
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 26.0 bits (56), Expect = 7.6
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 294 RELFVMASLKKLAFAHHPLLF---WSLLTILTNTIVCNFREHAPSIIFMD 340
R L V KK A PL ++ I+ P + ++
Sbjct: 35 RYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILE 84
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.2 bits (57), Expect = 7.9
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 238 DALGIAQPKG---VLLYGPPGTGKTLLARAVAHH 268
LG + + + G GK+ AR +
Sbjct: 70 QFLGTNGQRIPYIISIAGSVAVGKSTTARVLQAL 103
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
{Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Length = 359
Score = 26.1 bits (57), Expect = 8.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 139 VKPMDKKKVLVKVHPEGKFVVDIDKN-----IDINDVTPNCRVA 177
KP+D +K +V+ + + VVD KN +DI + T + R+A
Sbjct: 47 AKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDIANETKDRRIA 90
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 25.7 bits (56), Expect = 9.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRV 276
++L GP G GKT R +A E + ++
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 26.0 bits (56), Expect = 9.6
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 252 GPPGTGKTLLARAVAHHTECTFIRVS 277
G PG GK+ A ++V+
Sbjct: 61 GTPGAGKSTFLEAFGMLLIREGLKVA 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,398,347
Number of extensions: 66953
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 157
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)