BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy610
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VDJ|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase
(meta) From Bacillus Cereus With Homoserine
Length = 301
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 22 MAKRQAQGKDVHSIAISVLNLPPVKHLPGAK 52
M K +A+ +D+ ++ I++LNL P K A+
Sbjct: 23 MTKERAETQDIRALKIAILNLMPTKQETEAQ 53
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 12 NNVRRYAEEHMAKRQAQGKDVHSIAIS--------VLNLPPVKHLPGAKPGTFFARDNVS 63
N+R+ + + +A+ G V +A+ VL+ V LP KP
Sbjct: 207 ENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFS-VPMLPDDKPHYLMGVGKPD 265
Query: 64 NFIGWSRRGLGVFECLL 80
+ +G RG+ +FEC+L
Sbjct: 266 DIVGAVERGIDMFECVL 282
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 44 PVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILC 98
P + L G +PG F NV+N + L + + D L + +H+I+C
Sbjct: 51 PAERLTGLEPGELFVHRNVANLV--IHTDLNCLSVVQYAVDVLEV----EHIIIC 99
>pdb|2GHR|A Chain A, Crystal Structure Of Homoserine O-Succinyltransferase
(Np_981826.1) From Bacillus Cereus Atcc 10987 At 2.40 A
Resolution
Length = 302
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 23 AKRQAQGKDVHSIAISVLNLPPVKHLPGAK 52
K +A+ +D+ ++ I++LNL P K A+
Sbjct: 25 TKERAETQDIRALKIAILNLXPTKQETEAQ 54
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 44 PVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILC 98
P + L G +PG F NV+N + L + + D L + +H+I+C
Sbjct: 48 PAERLTGLEPGELFVHRNVANLV--IHTDLNCLSVVQYAVDVLEV----EHIIIC 96
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 44 PVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILC 98
P + L G +PG F NV+N + L + + D L + +H+I+C
Sbjct: 48 PAERLTGLEPGELFVHRNVANLV--IHTDLNCLSVVQYAVDVLEV----EHIIIC 96
>pdb|4EM6|D Chain D, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|A Chain A, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|B Chain B, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|C Chain C, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
Length = 553
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 6 FCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHL 48
F +H NN A H+A R K+V +V LP VKH+
Sbjct: 86 FAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNV--LPDVKHV 126
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 56 FFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCL 99
F DN++ F+ + G+G+ E FE D+ KN VI C+
Sbjct: 111 FRHSDNINKFLDFIH-GIGLPEIFHFELTDIYEGKNLPKVIYCI 153
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2
From Schizosaccharomyces Pombe
Length = 159
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 56 FFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCL 99
F DN++ F+ + G+G+ E FE D+ KN VI C+
Sbjct: 67 FRHSDNINKFLDFIH-GIGLPEIFHFELTDIYEGKNLPKVIYCI 109
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 60 DNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEISKTPPKKLN 119
D+ SN+ W ++ LG L+ + + K ++ + + L + I++T P+
Sbjct: 26 DSASNYFPWYKQELGKRPQLIIDIRSNVGEKKDQRIAVTLNKTAKHFSLHITETQPEDSA 85
Query: 120 TY 121
Y
Sbjct: 86 VY 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,898,786
Number of Sequences: 62578
Number of extensions: 143229
Number of successful extensions: 238
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)