Query psy610
Match_columns 128
No_of_seqs 145 out of 219
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:36:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 99.9 9E-22 1.9E-26 156.6 6.5 86 4-118 56-145 (193)
2 COG5199 SCP1 Calponin [Cytoske 99.8 2E-21 4.4E-26 151.6 3.8 71 44-117 57-131 (178)
3 KOG0532|consensus 99.5 2.8E-15 6.1E-20 135.8 3.0 81 3-106 604-687 (722)
4 cd00014 CH Calponin homology d 99.3 2.7E-12 5.9E-17 87.7 3.4 50 53-104 55-104 (107)
5 smart00033 CH Calponin homolog 99.0 2.5E-10 5.5E-15 77.0 2.6 47 54-102 56-103 (103)
6 PF00307 CH: Calponin homology 98.5 1.1E-07 2.3E-12 64.8 4.4 49 54-104 57-105 (108)
7 KOG2996|consensus 98.2 7.5E-07 1.6E-11 82.0 2.8 84 4-111 41-127 (865)
8 COG5261 IQG1 Protein involved 97.7 1.9E-05 4.1E-10 74.9 2.8 51 53-104 96-146 (1054)
9 KOG2128|consensus 97.6 3.1E-05 6.8E-10 75.8 2.5 55 55-111 97-152 (1401)
10 PF06395 CDC24: CDC24 Calponin 95.5 0.015 3.3E-07 41.7 3.2 35 55-89 39-73 (89)
11 PF11971 CAMSAP_CH: CAMSAP CH 74.7 2 4.3E-05 30.1 1.6 43 42-87 40-82 (85)
12 KOG0516|consensus 69.0 1.1 2.3E-05 43.1 -1.1 55 50-104 209-268 (1047)
13 TIGR03234 OH-pyruv-isom hydrox 62.3 30 0.00065 26.9 6.0 51 59-110 83-137 (254)
14 cd08531 SAM_PNT-ERG_FLI-1 Ster 62.1 8.4 0.00018 26.5 2.6 23 57-79 8-30 (75)
15 cd08541 SAM_PNT-FLI-1 Sterile 62.0 8.1 0.00018 27.8 2.6 27 56-82 19-47 (91)
16 PF06992 Phage_lambda_P: Repli 61.0 4.3 9.2E-05 33.8 1.1 19 61-79 102-124 (233)
17 cd08540 SAM_PNT-ERG Sterile al 52.5 13 0.00029 25.6 2.3 23 57-79 8-30 (75)
18 PF01261 AP_endonuc_2: Xylose 49.6 46 0.00099 24.0 4.9 54 56-110 67-126 (213)
19 cd08533 SAM_PNT-ETS-1,2 Steril 48.2 18 0.00039 24.7 2.4 39 58-103 8-46 (71)
20 PRK14834 undecaprenyl pyrophos 47.5 27 0.00058 29.0 3.7 46 54-103 39-86 (249)
21 PRK14835 undecaprenyl pyrophos 42.9 34 0.00073 28.9 3.7 47 54-104 66-114 (275)
22 cd08535 SAM_PNT-Tel_Yan Steril 42.1 26 0.00056 23.7 2.4 39 58-103 7-45 (68)
23 cd00019 AP2Ec AP endonuclease 41.3 43 0.00093 26.5 3.9 54 56-110 81-137 (279)
24 cd08542 SAM_PNT-ETS-1 Sterile 39.4 29 0.00063 24.8 2.4 25 56-80 21-45 (88)
25 KOG0251|consensus 39.3 47 0.001 30.3 4.3 46 56-106 246-292 (491)
26 cd08543 SAM_PNT-ETS-2 Sterile 37.8 32 0.00069 24.7 2.4 25 56-80 21-45 (89)
27 PRK14828 undecaprenyl pyrophos 37.6 45 0.00097 27.7 3.6 47 54-104 52-100 (256)
28 PRK14830 undecaprenyl pyrophos 36.0 24 0.00052 29.2 1.8 28 54-82 47-74 (251)
29 cd08536 SAM_PNT-Mae Sterile al 35.9 36 0.00079 22.8 2.3 21 58-78 6-26 (66)
30 cd08534 SAM_PNT-GABP-alpha Ste 30.5 47 0.001 23.6 2.3 24 56-79 21-44 (89)
31 PRK09997 hydroxypyruvate isome 30.3 62 0.0013 25.4 3.2 51 59-110 84-138 (258)
32 PRK13617 psbV cytochrome c-550 29.7 60 0.0013 25.8 3.0 57 54-110 94-165 (170)
33 PRK14827 undecaprenyl pyrophos 29.0 74 0.0016 27.2 3.6 46 55-104 93-140 (296)
34 PTZ00349 dehydrodolichyl dipho 27.7 77 0.0017 27.6 3.5 46 54-103 44-91 (322)
35 PRK14829 undecaprenyl pyrophos 27.5 41 0.00089 27.7 1.8 32 54-86 39-72 (243)
36 TIGR00542 hxl6Piso_put hexulos 26.8 78 0.0017 25.1 3.2 51 58-110 92-147 (279)
37 COG1254 AcyP Acylphosphatases 26.5 58 0.0013 23.1 2.2 28 57-87 50-77 (92)
38 PRK13210 putative L-xylulose 5 25.5 94 0.002 24.3 3.4 52 57-110 91-147 (284)
39 PF12844 HTH_19: Helix-turn-he 24.4 30 0.00066 21.4 0.4 23 62-85 41-63 (64)
40 PF12579 DUF3755: Protein of u 24.2 52 0.0011 19.8 1.3 12 56-67 3-14 (35)
41 PF06610 DUF1144: Protein of u 24.1 41 0.0009 26.3 1.1 14 63-76 130-143 (143)
42 cd08203 SAM_PNT Sterile alpha 24.0 79 0.0017 20.8 2.4 20 58-77 6-25 (66)
43 cd08532 SAM_PNT-PDEF-like Ster 23.6 75 0.0016 21.9 2.3 22 56-77 12-33 (76)
44 PF03962 Mnd1: Mnd1 family; I 23.4 42 0.00091 26.4 1.1 25 56-80 152-176 (188)
45 PRK14838 undecaprenyl pyrophos 23.3 55 0.0012 27.1 1.8 47 54-104 35-83 (242)
46 PRK14831 undecaprenyl pyrophos 23.2 56 0.0012 27.1 1.8 33 53-86 44-78 (249)
47 PRK14837 undecaprenyl pyrophos 23.1 55 0.0012 27.0 1.8 46 54-103 31-78 (230)
48 PRK14841 undecaprenyl pyrophos 22.8 57 0.0012 26.8 1.8 32 54-86 28-61 (233)
49 PRK14832 undecaprenyl pyrophos 22.5 57 0.0012 27.2 1.8 32 54-86 43-76 (253)
50 PRK14842 undecaprenyl pyrophos 22.5 57 0.0012 27.0 1.7 47 54-104 33-81 (241)
51 PF00550 PP-binding: Phosphopa 22.5 1.1E+02 0.0024 18.6 2.7 34 62-99 34-67 (67)
52 PRK09989 hypothetical protein; 22.4 3.8E+02 0.0082 20.9 6.4 54 56-110 81-138 (258)
53 PRK09856 fructoselysine 3-epim 21.6 1.4E+02 0.0031 23.2 3.8 52 58-110 88-143 (275)
54 PF14370 Topo_C_assoc: C-termi 21.2 65 0.0014 22.4 1.5 18 65-83 36-53 (71)
55 PRK10240 undecaprenyl pyrophos 21.1 65 0.0014 26.4 1.8 32 54-86 18-51 (229)
56 PF09061 Stirrup: Stirrup; In 20.9 61 0.0013 22.8 1.3 22 54-76 1-22 (79)
57 PRK07283 hypothetical protein; 20.6 65 0.0014 22.6 1.5 25 61-86 48-72 (98)
58 PF13361 UvrD_C: UvrD-like hel 20.6 1.7E+02 0.0036 22.7 3.9 44 59-104 87-130 (351)
59 PF08933 DUF1864: Domain of un 20.5 87 0.0019 28.1 2.6 41 55-104 70-112 (387)
60 TIGR00055 uppS undecaprenyl di 20.4 68 0.0015 26.3 1.8 47 54-104 24-72 (226)
61 KOG1602|consensus 20.4 62 0.0013 27.7 1.5 41 60-104 67-109 (271)
62 PRK00912 ribonuclease P protei 20.3 1.6E+02 0.0036 23.1 3.9 19 59-78 153-171 (237)
No 1
>KOG2046|consensus
Probab=99.85 E-value=9e-22 Score=156.59 Aligned_cols=86 Identities=29% Similarity=0.388 Sum_probs=72.3
Q ss_pred cccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccc
Q psy610 4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFET 83 (128)
Q Consensus 4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT 83 (128)
++|| +++|.+.+ .+....+.+.+.|++||||++||+++++ |||++.|+|||
T Consensus 56 ~iLC-kl~N~l~p---------------------------~~~~~~~~s~~~f~qmEnIs~Fi~a~~~-ygv~~~d~Fqt 106 (193)
T KOG2046|consen 56 VILC-KLINKLYP---------------------------GVVKKINESKMAFVQMENISNFIKAAKK-YGVPEVDLFQT 106 (193)
T ss_pred HHHH-HHHHHhCc---------------------------CcccccccccccHHHHHHHHHHHHHHHh-cCCChhhcccc
Confidence 6899 99999844 1222223456699999999999999998 99999999999
Q ss_pred cccccccChhHHHHHHHHHHc-ccc---CCCCCCCCccc
Q psy610 84 DDLIMRKNEKHVILCLLEIIS-GEK---FEISKTPPKKL 118 (128)
Q Consensus 84 ~DL~e~kn~~~Vv~cL~~l~R-a~~---~g~~~~gpk~~ 118 (128)
+||+|++|+.+|+.||++|+| |.+ ++.+.++||.-
T Consensus 107 vDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~~~g~k~a 145 (193)
T KOG2046|consen 107 VDLFEGKDMAQVQVTLLALARKAQKKGLFSGPGIGPKLA 145 (193)
T ss_pred cccccCCCHHHHHHHHHHHHHHHhhccccCCCCcCCchh
Confidence 999999999999999999999 764 46888888753
No 2
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.83 E-value=2e-21 Score=151.57 Aligned_cols=71 Identities=30% Similarity=0.453 Sum_probs=64.9
Q ss_pred CcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-ccc---CCCCCCCCcc
Q psy610 44 PVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEK---FEISKTPPKK 117 (128)
Q Consensus 44 ~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~---~g~~~~gpk~ 117 (128)
.|+|+++.+ +|+||||||.||.+.++ |||||.+||||+||+|+||+++|+.||++++| |++ +.++.+||+.
T Consensus 57 ~I~yKeSkm--pFVQmenIs~Fin~~~k-~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~p~lGP~L 131 (178)
T COG5199 57 DIKYKESKM--PFVQMENISSFINGLKK-LRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSGPFLGPHL 131 (178)
T ss_pred cceecccCC--ceeeHHHHHHHHHHHHH-hCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCCCccCccc
Confidence 499999976 89999999999999999 99999999999999999999999999999999 764 3577888863
No 3
>KOG0532|consensus
Probab=99.53 E-value=2.8e-15 Score=135.80 Aligned_cols=81 Identities=30% Similarity=0.466 Sum_probs=75.6
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| ++||+||. ++|++|||| +|+|+.... -++|.||.|||++||| +||||.+|+.
T Consensus 604 GViLC-hLaN~lRP-------------RSV~SIHVP---SPaV~klsm-----arcrrNVdnFLeaCRk-iGVpEa~lCS 660 (722)
T KOG0532|consen 604 GVILC-HLANHLRP-------------RSVASIHVP---SPAVPKLSM-----ARCRRNVDNFLEACRK-IGVPEADLCS 660 (722)
T ss_pred chhhH-hhhcccCC-------------CCccceecC---CCccchhHH-----HHHHHhHHHHHHHHHH-cCCChHhhcC
Confidence 57999 99999976 899999999 999998887 6799999999999999 9999999999
Q ss_pred ccccccc--cChhHHHHHHHHHHc-cc
Q psy610 83 TDDLIMR--KNEKHVILCLLEIIS-GE 106 (128)
Q Consensus 83 T~DL~e~--kn~~~Vv~cL~~l~R-a~ 106 (128)
..|++.+ ++++++..+++.+|. |+
T Consensus 661 ~~Dilq~~~r~~rk~~~t~~~~~~~a~ 687 (722)
T KOG0532|consen 661 PMDILQKIERNPRKVARTVLTVGKKAQ 687 (722)
T ss_pred HHHhhhhhcccchhHHHHHHhhccccC
Confidence 9999988 999999999999997 64
No 4
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.27 E-value=2.7e-12 Score=87.69 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=47.2
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
...|.+++||+.|+++|++ +||++. +|+++||++++|.++|+.||.++.|
T Consensus 55 ~~~~~~~~Ni~~~l~~~~~-~gi~~~-~~~~~Dl~~~~n~~~vl~~l~~l~~ 104 (107)
T cd00014 55 LSRFKRLENINLALNFAEK-LGVPVV-NFDAEDLVEDGDEKLVLGLLWSLIR 104 (107)
T ss_pred cchhhHHHHHHHHHHHHHH-cCCcee-ccCHHHHhhCCCceeeHHHHHHHHH
Confidence 3469999999999999998 999999 9999999999999999999999986
No 5
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.98 E-value=2.5e-10 Score=77.03 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=42.3
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccc-cChhHHHHHHHHH
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMR-KNEKHVILCLLEI 102 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~-kn~~~Vv~cL~~l 102 (128)
..|++++|++.|+++|++ +| ....+|+++||+++ |++.+|+.||+.+
T Consensus 56 ~~~~~~~Ni~~~l~~~~~-~g-~~~~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 56 SRFKKIENINLALSFAEK-LG-GKLVLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred cHHHHHHhHHHHHHHHHH-cC-CeeeccCHHHHhhcchHHHHHHHHHHhC
Confidence 369999999999999998 88 57789999999999 7999999999863
No 6
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.54 E-value=1.1e-07 Score=64.83 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=43.6
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
..|.+++||+.|+++|++.+|++... +++||++++|.+.|+.+|.++.+
T Consensus 57 ~~~~~~~Ni~~~l~~~~~~lg~~~~~--~~~dl~~~~~~~~vl~~l~~l~~ 105 (108)
T PF00307_consen 57 SPFDKLENIELALEAAEKKLGIPPLL--SPEDLVEKGDEKSVLSFLWQLFR 105 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSCTS---HHHHHSTT-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHCcCHHHHHHHHHHHHH
Confidence 57999999999999999779999887 99999999999999999999875
No 7
>KOG2996|consensus
Probab=98.21 E-value=7.5e-07 Score=81.98 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=67.9
Q ss_pred cccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccc
Q psy610 4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFET 83 (128)
Q Consensus 4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT 83 (128)
++|| |++|++...+-+ .+.|-.. .+...|.+-.||.-|+.+|..-+|+.+++||+.
T Consensus 41 vLLC-qLlnnL~p~sId---------------------lkeIn~r--pQmSqFLClkNIrtFl~~C~~~Fglr~seLF~a 96 (865)
T KOG2996|consen 41 VLLC-QLLNNLVPHSID---------------------LKEINLR--PQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEA 96 (865)
T ss_pred hHHH-HHHhhcCCCccc---------------------HHHhhcC--CCccchhhHhhHHHHHHHHHHHhCCchhhhcch
Confidence 6799 999999764322 1122222 334489999999999999987799999999999
Q ss_pred cccccccChhHHHHHHHHHHc---cccCCCC
Q psy610 84 DDLIMRKNEKHVILCLLEIIS---GEKFEIS 111 (128)
Q Consensus 84 ~DL~e~kn~~~Vv~cL~~l~R---a~~~g~~ 111 (128)
.|||.-++-..|+.+|-.|++ |...|+.
T Consensus 97 fDLfdv~dFgKVi~tlS~LS~t~ial~rGi~ 127 (865)
T KOG2996|consen 97 FDLFDVRDFGKVIKTLSRLSHTPIALNRGIR 127 (865)
T ss_pred hhhhhhhhHHHHHHHHHHhccChHHHhcCCC
Confidence 999999999999999999998 6777754
No 8
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=97.72 E-value=1.9e-05 Score=74.88 Aligned_cols=51 Identities=33% Similarity=0.527 Sum_probs=48.5
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.-.|.-.|||..|+..... .|+||.-=||-.||||+||+.+|+.||++|+-
T Consensus 96 ~LQfrHtdNIN~Fld~i~~-vGlPe~FhFEl~DlYekKN~pkViyciHaL~~ 146 (1054)
T COG5261 96 KLQFRHTDNINAFLDLIEH-VGLPESFHFELQDLYEKKNIPKVIYCIHALIS 146 (1054)
T ss_pred cceeeccccHHHHHhHhhh-cCCcceeeeehHhhhccCCcchhHHHHHHHHH
Confidence 3468999999999999998 99999999999999999999999999999997
No 9
>KOG2128|consensus
Probab=97.61 E-value=3.1e-05 Score=75.83 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=50.4
Q ss_pred ChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccCCCC
Q psy610 55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKFEIS 111 (128)
Q Consensus 55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~~ 111 (128)
.|.--|||.+|+.+... .|+||.=-|||-|+||+||++ |+.||++|+- -.+-|+.
T Consensus 97 ~frHtdNi~q~~~~me~-iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k~~~a 152 (1401)
T KOG2128|consen 97 HFRHTDNINQWLRAMES-IGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLFKQGKA 152 (1401)
T ss_pred eeecchhHHHHHHHHhh-cCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHhcCCCC
Confidence 49999999999999996 999999999999999999999 9999999998 7775543
No 10
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=95.52 E-value=0.015 Score=41.72 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.7
Q ss_pred ChhhHhhHHHHHHHHHhcCCCCccccccccccccc
Q psy610 55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMR 89 (128)
Q Consensus 55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~ 89 (128)
.=.+...|-.||.+|++++|+++.++|.-.|||..
T Consensus 39 ~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~ 73 (89)
T PF06395_consen 39 LKVCKKAIYKFIQACKQELGFPDEELFTISDLYGD 73 (89)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceeeeeccccC
Confidence 34566789999999999999999999999999964
No 11
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=74.66 E-value=2 Score=30.10 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=34.3
Q ss_pred CCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccccccc
Q psy610 42 LPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLI 87 (128)
Q Consensus 42 ~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~ 87 (128)
...|.+++.. ..+..+.|+..|.++|.+.+|.....+ +.+||+
T Consensus 40 ~~~I~~~~~m--S~~~~l~N~~ll~~~c~~~l~~~~~~l-~~edl~ 82 (85)
T PF11971_consen 40 LEDICLKTTM--SQADSLYNLQLLNSFCQSHLGFSCCHL-EPEDLL 82 (85)
T ss_pred HhHcccccch--HHHHhhhhHHHHHHHHHHHcCCCcCcC-CHHHHh
Confidence 4456655553 379999999999999987789988887 888875
No 12
>KOG0516|consensus
Probab=69.03 E-value=1.1 Score=43.12 Aligned_cols=55 Identities=27% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCCCCChhhHhhHHHHHHHHHhcCC-----CCccccccccccccccChhHHHHHHHHHHc
Q psy610 50 GAKPGTFFARDNVSNFIGWSRRGLG-----VFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 50 ~~~~~~FkardNIsnFL~~crk~~G-----V~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
......|.++++..+|..||+...| ..+..+++..++.+++|..+++.+...++|
T Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 268 (1047)
T KOG0516|consen 209 AELMWLFEAREELLQFDWSDRNLNGAARSEYSEVLMRELEQLVLRKNDLEVVGDQLLLGR 268 (1047)
T ss_pred HhhhhHHHHHHHHhccCChhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHhhc
Confidence 3446689999999999999998455 899999999999999999999999999998
No 13
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=62.31 E-value=30 Score=26.90 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=35.5
Q ss_pred HhhHHHHHHHHHhcCCCCcccccccc---ccccccChhHHHHHHHHHHc-cccCCC
Q psy610 59 RDNVSNFIGWSRRGLGVFECLLFETD---DLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~LFqT~---DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
++++.++|..|++ +|.+-..++... +.-....-+..+..|.++++ |.++|+
T Consensus 83 ~~~~~~~i~~a~~-lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi 137 (254)
T TIGR03234 83 REGVALAIAYARA-LGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL 137 (254)
T ss_pred HHHHHHHHHHHHH-hCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5889999999997 999866554321 11112223677888999998 887774
No 14
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=62.09 E-value=8.4 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.609 Sum_probs=20.1
Q ss_pred hhHhhHHHHHHHHHhcCCCCccc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~ 79 (128)
=.+++|...|.|+-++|++++.+
T Consensus 8 Wt~~~V~~WL~Wa~~ef~L~~i~ 30 (75)
T cd08531 8 WTREHVRQWLEWAVKEYGLQDVD 30 (75)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCC
Confidence 35789999999999899998876
No 15
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=62.02 E-value=8.1 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.640 Sum_probs=22.9
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccc--cc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLL--FE 82 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~L--Fq 82 (128)
.=.+++|..+|.||-++|++++.+. |+
T Consensus 19 ~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~ 47 (91)
T cd08541 19 LWTQEHVRQWLEWAIKEYGLMEIDTSFFQ 47 (91)
T ss_pred hcCHHHHHHHHHHHHHHcCCCCCChhhcc
Confidence 4567899999999998999988776 65
No 16
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=61.05 E-value=4.3 Score=33.77 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=14.6
Q ss_pred hHHHHHHHHH----hcCCCCccc
Q psy610 61 NVSNFIGWSR----RGLGVFECL 79 (128)
Q Consensus 61 NIsnFL~~cr----k~~GV~e~~ 79 (128)
++.+||.||+ ..+|+|..+
T Consensus 102 S~GqFI~WCk~~~~~~lGLP~~d 124 (233)
T PF06992_consen 102 SPGQFIAWCKPGDYEALGLPSVD 124 (233)
T ss_pred ChhHHHHHHhcchHHhcCCCCHH
Confidence 4679999998 347998764
No 17
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=52.53 E-value=13 Score=25.60 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=20.4
Q ss_pred hhHhhHHHHHHHHHhcCCCCccc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~ 79 (128)
=.+++|..+|.||-++|++++.+
T Consensus 8 Wt~~~V~~WL~Wa~~ef~L~~~~ 30 (75)
T cd08540 8 WSTDHVRQWLEWAVKEYGLPDVD 30 (75)
T ss_pred cCHHHHHHHHHHHHHHhCCCCCC
Confidence 35789999999999899999887
No 18
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=49.60 E-value=46 Score=24.01 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=40.7
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccccccc-----cccccccChhHHHHHHHHHHc-cccCCC
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLLFET-----DDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~LFqT-----~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
-...+.+...++.|++ +|++-.-+.-. .+.-...+...++..|.+++. |.++|+
T Consensus 67 ~~~~~~~~~~i~~a~~-lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKR-LGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp HHHHHHHHHHHHHHHH-HTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHH-hCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 4557889999999998 99887766633 233334677888999999998 888774
No 19
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=48.15 E-value=18 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.2
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHH
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII 103 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~ 103 (128)
..++|...|.|+-++|++++.++ +.+ ++..=-+|.|.-.
T Consensus 8 t~~~V~~WL~Wa~~ef~L~~v~~----~~F---~m~Gk~LC~ls~e 46 (71)
T cd08533 8 TETHVRQWLLWAVNEFSLEGVNF----QKF---CMSGRDLCALGKE 46 (71)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCc----ccC---CCCHHHHHcCCHH
Confidence 46899999999998899987765 222 3344455655443
No 20
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=47.45 E-value=27 Score=28.99 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=33.6
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHH
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEII 103 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~ 103 (128)
|--.-.+++..++.||.+ +||+...+ |.|+-. +..+.-+..||+|.
T Consensus 39 GH~~G~~~l~~i~~~c~~-lgI~~lTvYaFS~eN~---~R~~~EV~~Lm~L~ 86 (249)
T PRK14834 39 GHRAGVEALRRVVRAAGE-LGIGYLTLFAFSSENW---SRPASEVSDLFGLL 86 (249)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCEEEEEEEecccc---CCCHHHHHHHHHHH
Confidence 456778999999999997 99999887 556554 33455556666655
No 21
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.93 E-value=34 Score=28.86 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=34.9
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
|-..-.+.+..++.||.+ +||....+ |.|+.. +..+.=+..|++|..
T Consensus 66 GH~~G~~~l~~i~~~c~~-lGIk~lTvYaFS~EN~---~R~~~EV~~Lm~L~~ 114 (275)
T PRK14835 66 GHEFGVQKAYEVLEWCLE-LGIPTVTIWVFSTDNF---SRSPAEVETLMNLFE 114 (275)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEEEEcccc---CCCHHHHHHHHHHHH
Confidence 345678999999999997 99999887 677765 334555666766654
No 22
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=42.07 E-value=26 Score=23.67 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=26.8
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHH
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII 103 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~ 103 (128)
..++|..+|.|+-++|++++.++ +.+ ++..=-+|.+.-.
T Consensus 7 t~~~V~~WL~wa~~ef~L~~i~~----~~F---~mnGk~LC~ls~e 45 (68)
T cd08535 7 SRDDVLQWLRWAENEFSLPPIDS----NTF---EMNGKALCLLTKE 45 (68)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCh----hcc---CCCHHHHhcCCHH
Confidence 46899999999988899988753 222 3344455655444
No 23
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=41.31 E-value=43 Score=26.45 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=38.3
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccccccccc--ccccChhHHHHHHHHHHc-cccCCC
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLLFETDDL--IMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~LFqT~DL--~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
-..++.+...++.|++ +|++-.-++....- ......+.++..|.++++ |.++|+
T Consensus 81 ~~~~~~~~~~i~~A~~-lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi 137 (279)
T cd00019 81 EKSIERLKDEIERCEE-LGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGV 137 (279)
T ss_pred HHHHHHHHHHHHHHHH-cCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3456778888889987 99997666555432 123345788899999998 877764
No 24
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=39.40 E-value=29 Score=24.81 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=21.5
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLL 80 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~L 80 (128)
.=.+++|...|.||-++|++++.++
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~i~~ 45 (88)
T cd08542 21 QWTETHVRDWVMWAVNEFSLKGVDF 45 (88)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCCc
Confidence 4467899999999998999998765
No 25
>KOG0251|consensus
Probab=39.30 E-value=47 Score=30.30 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GE 106 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~ 106 (128)
-+++|.++.|+.|||. +|+... |+.-+|- +=....+..|.+..+ +.
T Consensus 246 ~~q~e~L~~f~~~ck~-~g~~r~--~~iP~l~--~i~~s~l~~lEe~l~~~~ 292 (491)
T KOG0251|consen 246 LSQTEKLSEFLKVCKS-VGVDRG--FEIPVLK--RIPISLLEALEEHLRDVE 292 (491)
T ss_pred HHHHHHHHHHHHHHHH-hccccc--ccCcchh--hcCHHHHHHHHHHHhhcc
Confidence 4689999999999997 998755 4445554 555677777777777 54
No 26
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=37.76 E-value=32 Score=24.66 Aligned_cols=25 Identities=8% Similarity=0.444 Sum_probs=21.2
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLL 80 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~L 80 (128)
.=..++|...|.||-++|++++.+.
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~i~~ 45 (89)
T cd08543 21 LWTEQQVCQWLLWATNEFSLVNVNF 45 (89)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCCc
Confidence 4467899999999998999998664
No 27
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.61 E-value=45 Score=27.72 Aligned_cols=47 Identities=28% Similarity=0.461 Sum_probs=35.2
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
|-..-.+.+..++.||.+ +||+...+ |.|+.. +..+.-+..|+.|.+
T Consensus 52 GH~~G~~~l~~~~~~~~~-~gIk~lTvYaFS~eN~---~R~~~Ev~~Lm~L~~ 100 (256)
T PRK14828 52 GHRAGAAKIGEFLGWCDE-TDVNVVTLYLLSTDNL---GRPSEELNPLLDIIE 100 (256)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEEEEhhhc---CCCHHHHHHHHHHHH
Confidence 445778999999999997 99999887 666654 334566667776654
No 28
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.05 E-value=24 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=22.8
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
|--.--+.+.+++.||.+ +||+..-+|.
T Consensus 47 Gh~~G~~~l~~~l~~c~~-~GI~~vTvYa 74 (251)
T PRK14830 47 GHKAGMDTVKKITKAASE-LGVKVLTLYA 74 (251)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCEEEEEE
Confidence 334566899999999997 9999988754
No 29
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=35.95 E-value=36 Score=22.78 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=18.6
Q ss_pred hHhhHHHHHHHHHhcCCCCcc
Q psy610 58 ARDNVSNFIGWSRRGLGVFEC 78 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~ 78 (128)
.+++|...|.|+-++|+++..
T Consensus 6 s~~~V~~WL~w~~~ef~L~~~ 26 (66)
T cd08536 6 SREHVRTWLRWVSARYQLEVV 26 (66)
T ss_pred CHHHHHHHHHHHHHHhCCCCC
Confidence 468999999999988999984
No 30
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=30.53 E-value=47 Score=23.62 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=20.0
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=..++|...|.|+-++|++++.+
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~v~ 44 (89)
T cd08534 21 EWTEDQVLHWVVWAVKEFSLTDID 44 (89)
T ss_pred HcCHHHHHHHHHHHHHHcCCCCCC
Confidence 345789999999999889998654
No 31
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=30.35 E-value=62 Score=25.38 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=35.5
Q ss_pred HhhHHHHHHHHHhcCCCCccccccc---cccccccChhHHHHHHHHHHc-cccCCC
Q psy610 59 RDNVSNFIGWSRRGLGVFECLLFET---DDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~LFqT---~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
++.+...|+.|+. +|.+-..+|-. .+.-....-......|.+++. |.++|+
T Consensus 84 ~~~~~~~i~~a~~-lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 138 (258)
T PRK09997 84 RDGVAAAIRYARA-LGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDI 138 (258)
T ss_pred HHHHHHHHHHHHH-hCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5788999999998 99997666532 222223334667788888887 766664
No 32
>PRK13617 psbV cytochrome c-550; Provisional
Probab=29.67 E-value=60 Score=25.85 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred CChhhHhhHHHHHHHHHhc-------------CCCCccccccccccccccChhHHHHHHHHHHc--cccCCC
Q psy610 54 GTFFARDNVSNFIGWSRRG-------------LGVFECLLFETDDLIMRKNEKHVILCLLEIIS--GEKFEI 110 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~-------------~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R--a~~~g~ 110 (128)
+....||||.++.+|.+.. -|+...++|..-+-....+.+.|.-=|+.+.. +.++|.
T Consensus 94 aa~p~r~nv~aLv~yikdP~sydg~~s~~e~~P~~~~~~imP~~~~LsdeeL~alAayLl~~~k~~~~~wgg 165 (170)
T PRK13617 94 LATPARDNVDALVDYLKDPTSYDGEYSIADLHPSMRSADLYPAMRDLNDEDLRLMAGYILVAPKVQGTQWGG 165 (170)
T ss_pred ccCCCCCCHHHHHHHHhChHhhcchhhccccCccccccccCcccCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 3456899999999999864 24444557776655556667777777776655 445554
No 33
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.01 E-value=74 Score=27.22 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=31.5
Q ss_pred ChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 55 TFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 55 ~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
-..--+++..++.||.+ +||+...+ |.|+-. |..+.=+..||.|.+
T Consensus 93 H~~G~~~l~~v~~~c~~-lGI~~lTvYaFStEN~---kR~~~EV~~Lm~L~~ 140 (296)
T PRK14827 93 HKMGEAVVIDIACGAIE-LGIKWLSLYAFSTENW---KRSPEEVRFLMGFNR 140 (296)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCEEEEeeecchhh---cCCHHHHHHHHHHHH
Confidence 34567899999999997 99999887 556655 223344445555543
No 34
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=27.70 E-value=77 Score=27.58 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=34.0
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHH
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEII 103 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~ 103 (128)
|-..-.+.+..++.||.+ +||+..-+ |.|+-. |..+.-+..||.|.
T Consensus 44 GH~~G~~~l~~il~~c~~-lGIk~lTlYAFStENw---kRp~~EV~~Lm~L~ 91 (322)
T PTZ00349 44 GHFMGSKALIQIIEICIK-LKIKILSVFSFSLLNY---NRSPEEIHFLFYLN 91 (322)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEEeehhhh---CCCHHHHHHHHHHH
Confidence 456677899999999997 99998876 667665 33455566666655
No 35
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.52 E-value=41 Score=27.69 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=26.0
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--cccccc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDL 86 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL 86 (128)
|-..-.+.+..++.||.+ +||+..-+ |.++-.
T Consensus 39 GH~~G~~~l~~iv~~c~~-~gI~~vTvYaFS~eN~ 72 (243)
T PRK14829 39 GHKAGEPVLFDVVAGAIE-AGVPYLSLYTFSTENW 72 (243)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEeeecchhh
Confidence 456778999999999998 99999887 455555
No 36
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.83 E-value=78 Score=25.06 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=35.1
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccc-c---ccChhHHHHHHHHHHc-cccCCC
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLI-M---RKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~-e---~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
.++.+...|+.|+. +|.+-..++ +.+.. + ......++..|.+++. |.++|+
T Consensus 92 ~~~~~~~~i~~a~~-lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 92 GLEIMEKAIQLARD-LGIRTIQLA-GYDVYYEEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHHHHHHH-hCCCEEEec-CcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35668888999997 999866554 43322 1 2235678888889988 877774
No 37
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=26.52 E-value=58 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=20.2
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLI 87 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~ 87 (128)
...++++.|++|+++ | |..--.+-+|+.
T Consensus 50 G~~~~v~~~~~~l~~--g-~~~a~V~~v~~~ 77 (92)
T COG1254 50 GPDEAVEKFIEWLRK--G-PPAAKVERVEVE 77 (92)
T ss_pred cCHHHHHHHHHHHHh--C-CCceEEEEEEEE
Confidence 346779999999997 7 666555555553
No 38
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.48 E-value=94 Score=24.25 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=36.0
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccc-cc---cChhHHHHHHHHHHc-cccCCC
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLI-MR---KNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~-e~---kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
..++.+...|++|+. +|++-..++ ..+.+ .. ......+.-|.++++ |.++|+
T Consensus 91 ~~~~~~~~~i~~a~~-lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 91 RALEIMKKAIRLAQD-LGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHHHHHHH-hCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357888999999997 999887654 22221 11 234567778888888 877774
No 39
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=24.36 E-value=30 Score=21.37 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCCccccccccc
Q psy610 62 VSNFIGWSRRGLGVFECLLFETDD 85 (128)
Q Consensus 62 IsnFL~~crk~~GV~e~~LFqT~D 85 (128)
++.+.+-|+. +||+...+|...|
T Consensus 41 ~~~l~~i~~~-~~v~~~~l~~~~~ 63 (64)
T PF12844_consen 41 VSTLKKIAEA-LGVSLDELFDGED 63 (64)
T ss_dssp HHHHHHHHHH-HTS-HHHHCCCHH
T ss_pred HHHHHHHHHH-hCCCHHHHhccCC
Confidence 6778889997 9999999998764
No 40
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=24.18 E-value=52 Score=19.79 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=6.0
Q ss_pred hhhHhhHHHHHH
Q psy610 56 FFARDNVSNFIG 67 (128)
Q Consensus 56 FkardNIsnFL~ 67 (128)
|+..|||+-|-+
T Consensus 3 ~q~~eNidLf~~ 14 (35)
T PF12579_consen 3 FQLQENIDLFCQ 14 (35)
T ss_pred cchhhhHHHHHH
Confidence 455555555543
No 41
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.07 E-value=41 Score=26.28 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCCC
Q psy610 63 SNFIGWSRRGLGVF 76 (128)
Q Consensus 63 snFL~~crk~~GV~ 76 (128)
..||++||+-+||+
T Consensus 130 G~FLd~cRrlF~V~ 143 (143)
T PF06610_consen 130 GYFLDYCRRLFRVP 143 (143)
T ss_pred HHHHHHHHHHhCCC
Confidence 57999999877774
No 42
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=23.98 E-value=79 Score=20.77 Aligned_cols=20 Identities=10% Similarity=0.499 Sum_probs=17.6
Q ss_pred hHhhHHHHHHHHHhcCCCCc
Q psy610 58 ARDNVSNFIGWSRRGLGVFE 77 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e 77 (128)
..++|...|.|+-++|+++.
T Consensus 6 t~~~V~~Wl~w~~~~f~L~~ 25 (66)
T cd08203 6 TKEHVLQWLEWAVKEFSLPP 25 (66)
T ss_pred CHHHHHHHHHHHHHhcCCCC
Confidence 36889999999988899997
No 43
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=23.57 E-value=75 Score=21.88 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=19.0
Q ss_pred hhhHhhHHHHHHHHHhcCCCCc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFE 77 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e 77 (128)
.=..++|...|.|+-++|++++
T Consensus 12 ~Ws~~~V~~WL~w~~~ef~L~~ 33 (76)
T cd08532 12 QWSPANVQKWLLWTEHQYRLPP 33 (76)
T ss_pred hcCHHHHHHHHHHHHHHhCCCC
Confidence 4457899999999988899986
No 44
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.41 E-value=42 Score=26.43 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=20.7
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLL 80 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~L 80 (128)
-.=-|||..-.+||++.+|+++.++
T Consensus 152 nrwTDNI~~l~~~~~~k~~~~~~~i 176 (188)
T PF03962_consen 152 NRWTDNIFSLKSYLKKKFGMDEEDI 176 (188)
T ss_pred HHHHhhHHHHHHHHHHhcCCCHHHH
Confidence 4556999999999998799987654
No 45
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.34 E-value=55 Score=27.07 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=32.5
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
|--.--+++..++.||.+ +||+..-+ |.|+-. |..+.=+..||.|..
T Consensus 35 GH~~G~~~l~~i~~~~~~-~gI~~lT~YaFS~EN~---kR~~~Ev~~Lm~l~~ 83 (242)
T PRK14838 35 GHQAGAETVHIITEEAAR-LGVKFLTLYTFSTENW---NRPSDEVAALMSLLL 83 (242)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEeechhhc---CCCHHHHHHHHHHHH
Confidence 345567899999999997 99999876 677766 223344445555543
No 46
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.20 E-value=56 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCcccc--cccccc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLL--FETDDL 86 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL 86 (128)
-|-..-.+.+.+++.||.+ +||+..-+ |.|+-.
T Consensus 44 ~GH~~G~~~l~~i~~~c~~-~GI~~vT~yaFS~eN~ 78 (249)
T PRK14831 44 MGHRRGVDALKDLLRCCKD-WGIGALTAYAFSTENW 78 (249)
T ss_pred hhHHHHHHHHHHHHHHHHH-cCCCEEEEeecchhhh
Confidence 3556778999999999997 99999887 455555
No 47
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.10 E-value=55 Score=26.96 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=32.0
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHH
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEII 103 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~ 103 (128)
|--.--+++..++.||.+ +||+..-+ |.|+-.- .++.=+..||+|.
T Consensus 31 GH~~G~~~~~~i~~~c~~-~GI~~lT~YaFS~EN~~---Rp~~EV~~Lm~L~ 78 (230)
T PRK14837 31 GHKEGLKRAKEIVKHSLK-LGIKYLSLYVFSTENWN---RTDSEIEHLMFLI 78 (230)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCEEEEEEeehhhcC---CCHHHHHHHHHHH
Confidence 445667899999999997 99998877 6676652 2333344555554
No 48
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.79 E-value=57 Score=26.79 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=26.7
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--cccccc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDL 86 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL 86 (128)
|-..-.+.+..+++||.+ +||+..-+ |.|+-.
T Consensus 28 GH~~G~~~l~~i~~~~~~-lgIk~lTvYaFS~eN~ 61 (233)
T PRK14841 28 GHQRGAEVLHNTVKWSLE-LGIKYLTAFSFSTENW 61 (233)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCEEEEEeeeHhhc
Confidence 456778999999999997 99998876 677766
No 49
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.54 E-value=57 Score=27.21 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=25.6
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--cccccc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDL 86 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL 86 (128)
|--.--+++..+++||.+ +||+..-+ |.|+-.
T Consensus 43 GH~~G~~~l~~i~~~c~~-~gI~~lTvyaFS~EN~ 76 (253)
T PRK14832 43 GHRQGARTLKELLRCCKD-WGIKALTAYAFSTENW 76 (253)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEEeehhhc
Confidence 334557899999999997 99999876 667766
No 50
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.52 E-value=57 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=33.6
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
|-..--+.+..++.||.+ +||+..-+ |.|+-. |..+.=+..||.|..
T Consensus 33 GH~~G~~~l~~i~~~c~~-lgI~~vTvYaFS~eN~---~R~~~EV~~Lm~L~~ 81 (241)
T PRK14842 33 GHREGANAIDRLMDASLE-YGLKNISLYAFSTENW---KRPITEIRSIFGLLV 81 (241)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCEEEEEEeehhhc---CCCHHHHHHHHHHHH
Confidence 456677899999999998 99998876 667665 233444556666654
No 51
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=22.47 E-value=1.1e+02 Score=18.60 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCccccccccccccccChhHHHHHH
Q psy610 62 VSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCL 99 (128)
Q Consensus 62 IsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL 99 (128)
+-.++.+.+++||+. +...|+++..+++.++..|
T Consensus 34 ~~~l~~~l~~~~g~~----i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 34 AIELVSELEEEFGIK----IPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHHTSS----TTHHHHCTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----CCHHHHHcCCCHHHHHhHC
Confidence 345666777668873 4455888888887776543
No 52
>PRK09989 hypothetical protein; Provisional
Probab=22.43 E-value=3.8e+02 Score=20.90 Aligned_cols=54 Identities=9% Similarity=-0.095 Sum_probs=35.1
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccccccc--cccc-ccChhHHHHHHHHHHc-cccCCC
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLLFETD--DLIM-RKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~LFqT~--DL~e-~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
...++.+..-|+.|+. +|.+-..+|... +-.. ......++..|.+++. |...|+
T Consensus 81 ~~~~~~l~~~i~~A~~-lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 138 (258)
T PRK09989 81 HEARADIDLALEYALA-LNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGK 138 (258)
T ss_pred HHHHHHHHHHHHHHHH-hCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457888999999997 999976554322 1111 2223457888888887 766663
No 53
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.59 E-value=1.4e+02 Score=23.21 Aligned_cols=52 Identities=10% Similarity=0.000 Sum_probs=36.4
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccc---cccChhHHHHHHHHHHc-cccCCC
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLI---MRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~---e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
..+-+..-|++|+. +|.+-..++.+.+-+ .....+.++..|.+++. |.++|+
T Consensus 88 ~~~~~~~~i~~a~~-lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 88 SLDMIKLAMDMAKE-MNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHHHHHHH-hCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34667778899987 999987665543221 22345788889999998 877774
No 54
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=21.16 E-value=65 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=12.8
Q ss_pred HHHHHHhcCCCCccccccc
Q psy610 65 FIGWSRRGLGVFECLLFET 83 (128)
Q Consensus 65 FL~~crk~~GV~e~~LFqT 83 (128)
.++||++ +|||=.-+|..
T Consensus 36 tvAWck~-~~VPieKifsk 53 (71)
T PF14370_consen 36 TVAWCKR-HEVPIEKIFSK 53 (71)
T ss_dssp HHHHHHH-TT--GGGTS-H
T ss_pred HHHHHHH-hCCcHHHHhhH
Confidence 5789998 99999888863
No 55
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.13 E-value=65 Score=26.38 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=26.1
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--cccccc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDL 86 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL 86 (128)
|-..--+.+..++.||.+ +||+..-+ |.|+-.
T Consensus 18 GH~~G~~~l~~i~~~c~~-~GI~~lT~yaFS~eN~ 51 (229)
T PRK10240 18 GHKAGAKSVRRAVSFAAN-NGIEALTLYAFSSENW 51 (229)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEeeehhhc
Confidence 345667899999999997 99998876 677766
No 56
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=20.85 E-value=61 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=13.1
Q ss_pred CChhhHhhHHHHHHHHHhcCCCC
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVF 76 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~ 76 (128)
|+|----|.+.|-+|+.+ |||.
T Consensus 1 g~fgl~lnf~afk~was~-ygve 22 (79)
T PF09061_consen 1 GNFGLSLNFNAFKEWASK-YGVE 22 (79)
T ss_dssp ---EE---HHHHHHHHHT-TT-E
T ss_pred CCcCccccHHHHHHHHHH-hCeE
Confidence 345566788999999998 9994
No 57
>PRK07283 hypothetical protein; Provisional
Probab=20.58 E-value=65 Score=22.58 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCCCCcccccccccc
Q psy610 61 NVSNFIGWSRRGLGVFECLLFETDDL 86 (128)
Q Consensus 61 NIsnFL~~crk~~GV~e~~LFqT~DL 86 (128)
-...|.++|+. |+||-...|...+|
T Consensus 48 ~~kk~~~~~~~-~~Vp~~~~~t~~eL 72 (98)
T PRK07283 48 LTKKVTDKSNY-YQVEVSTVFSTLEL 72 (98)
T ss_pred HHHHHHHHHHH-cCCCEEEeCCHHHH
Confidence 45678899997 99999888866544
No 58
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=20.56 E-value=1.7e+02 Score=22.68 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 59 RDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
...+..+.+++++ .||| ..+....++++..-++.++..|..+..
T Consensus 87 ~~~~~~i~~~L~~-~gIp-~~~~~~~~~~~~~~v~~l~~lL~~l~~ 130 (351)
T PF13361_consen 87 NSQIKEIEDALKE-AGIP-YRISGSKSLFESPEVKDLLSLLRLLLN 130 (351)
T ss_dssp GGHHHHHHHHHHH-TTS--EEESSSSBGGGSHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHhh-hcce-eEeccccchhccchHHHHHHHHhhccC
Confidence 4667888999998 9999 466667778877776666666555543
No 59
>PF08933 DUF1864: Domain of unknown function (DUF1864); InterPro: IPR015029 This protein has no known function. It is found in various hypothetical and conserved domain proteins. ; PDB: 2NWB_A 1ZEE_B 2X66_A 2V7L_A 2V7M_A 2V7K_A 2X67_A 2X68_A 2V7J_A 2V7I_A.
Probab=20.52 E-value=87 Score=28.06 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=28.8
Q ss_pred ChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHH--Hc
Q psy610 55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI--IS 104 (128)
Q Consensus 55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l--~R 104 (128)
.|-.|-||..|+..||+ .||.|-.= .+-...+--+++++ ||
T Consensus 70 a~a~lgnvGl~m~s~rR-Hgi~EP~~--------e~~~P~~E~s~Lal~iGa 112 (387)
T PF08933_consen 70 AFALLGNVGLFMGSCRR-HGITEPSR--------ETAVPLVEASALALHIGA 112 (387)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSS-CCC---------SCSTTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHh-cCCCCCcc--------cccCchhhHHHHHHHHhh
Confidence 48899999999999998 89755321 13335556677777 66
No 60
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=20.42 E-value=68 Score=26.30 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=33.5
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
|-..--+.+..++.||.+ +||+..-+ |.|+-.- .++.=+..||.|.+
T Consensus 24 GH~~G~~~~~~v~~~c~~-~GI~~lT~yaFStEN~~---Rp~~EV~~Lm~L~~ 72 (226)
T TIGR00055 24 GHKAGVKSLRRILRWCAN-LGVECLTLYAFSTENWK---RPKEEVDFLMELFE 72 (226)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCEEEEEEeehhhcC---cCHHHHHHHHHHHH
Confidence 446667899999999997 99998876 6777662 33444556666543
No 61
>KOG1602|consensus
Probab=20.40 E-value=62 Score=27.71 Aligned_cols=41 Identities=15% Similarity=0.372 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhcCCCCcccccc--ccccccccChhHHHHHHHHHHc
Q psy610 60 DNVSNFIGWSRRGLGVFECLLFE--TDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 60 dNIsnFL~~crk~~GV~e~~LFq--T~DL~e~kn~~~Vv~cL~~l~R 104 (128)
+-+..+|+||.+ +||+++..|- ++. + |..+.=+.+||.|++
T Consensus 67 ~~l~~ile~C~~-lGI~~vT~fAFSieN-F--kRs~eEVd~LM~L~~ 109 (271)
T KOG1602|consen 67 EALKEILELCKE-LGIKEVTVFAFSIEN-F--KRSPEEVDGLMDLAL 109 (271)
T ss_pred HHHHHHHHHHHH-cCCcEEEEEEEehhh-h--CCCHHHHHHHHHHHH
Confidence 346789999997 9999988753 332 2 334566788888875
No 62
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=20.26 E-value=1.6e+02 Score=23.07 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=15.4
Q ss_pred HhhHHHHHHHHHhcCCCCcc
Q psy610 59 RDNVSNFIGWSRRGLGVFEC 78 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~ 78 (128)
..|...++++|++ +|+|=+
T Consensus 153 ~~~~~~~~~~~~~-~g~pii 171 (237)
T PRK00912 153 LSNFRDNLALARK-YDFPLV 171 (237)
T ss_pred HHHHHHHHHHHHh-cCCCEE
Confidence 5677789999998 998754
Done!