Query psy610
Match_columns 128
No_of_seqs 145 out of 219
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:37:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ujo_A Transgelin; CH domain, 99.9 7.8E-26 2.7E-30 168.9 4.7 90 3-117 43-139 (144)
2 1wym_A Transgelin-2; CH domain 99.9 1.3E-24 4.6E-29 163.8 6.8 89 3-117 51-146 (155)
3 1wyp_A Calponin 1; CH domain, 99.9 1.1E-24 3.7E-29 161.3 5.7 86 3-117 45-132 (136)
4 1wyn_A Calponin-2; CH domain, 99.9 1.9E-24 6.4E-29 161.9 6.5 87 3-118 45-135 (146)
5 2rr8_A Iqgap1 protein; F-actin 99.9 2.7E-24 9.4E-29 166.9 3.2 86 4-110 56-144 (190)
6 1p2x_A RNG2 protein, RAS GTPas 99.9 1.7E-23 5.7E-28 158.4 5.9 80 3-110 41-121 (159)
7 1h67_A Calponin alpha; cytoske 99.9 1.5E-23 5.1E-28 149.4 5.2 76 3-107 31-107 (108)
8 3i6x_A P195, RAS GTPase-activa 99.9 7.8E-24 2.7E-28 165.4 3.6 88 3-111 77-167 (193)
9 1p5s_A RAS GTPase-activating-l 99.9 1.9E-22 6.4E-27 158.4 5.2 80 3-110 85-165 (203)
10 2l3g_A RHO guanine nucleotide 99.8 1.4E-21 4.7E-26 143.8 4.3 54 54-110 72-126 (126)
11 1wyr_A RHO guanine nucleotide 99.8 6.8E-21 2.3E-25 138.7 4.7 51 54-108 66-117 (121)
12 3ky9_A Proto-oncogene VAV; cal 99.7 8.7E-19 3E-23 151.3 5.9 89 3-115 43-134 (587)
13 2yrn_A Neuron navigator 2 isof 98.3 5.8E-07 2E-11 64.8 5.4 49 53-104 73-121 (129)
14 1pxy_A Fimbrin-like protein; c 97.9 6.8E-06 2.3E-10 70.4 4.3 37 54-92 73-109 (506)
15 1wku_A Alpha-actinin 3; calpon 97.2 0.00033 1.1E-08 55.4 5.1 49 53-104 79-127 (254)
16 1rt8_A Fimbrin; filamentous ac 97.0 0.00038 1.3E-08 59.8 3.4 50 53-104 80-129 (513)
17 1aoa_A T-fimbrin; actin-bindin 97.0 0.00072 2.5E-08 53.6 4.4 48 54-104 89-136 (275)
18 1dxx_A Dystrophin; structural 96.7 0.0015 5.1E-08 51.1 4.6 47 54-103 69-115 (246)
19 2wa7_A Filamin-B; disease muta 96.6 0.0028 9.7E-08 49.6 5.2 48 54-104 75-122 (245)
20 1wyo_A Protein EB3, microtubul 96.5 0.0021 7.2E-08 49.1 4.0 60 4-91 49-108 (159)
21 2qjz_A Microtubule-associated 96.5 0.001 3.5E-08 48.7 1.8 61 3-91 31-91 (123)
22 1sh5_A Plectin 1, PLTN, PCN; a 96.4 0.0035 1.2E-07 48.8 4.6 48 54-104 69-116 (245)
23 1rt8_A Fimbrin; filamentous ac 95.1 0.024 8.2E-07 48.6 5.1 49 53-104 343-391 (513)
24 3f7p_A Plectin-1; plakin, hemi 94.0 0.07 2.4E-06 43.5 5.0 49 53-104 124-172 (296)
25 1sjj_A Actinin; 3-helix bundle 90.5 0.73 2.5E-05 40.6 7.4 49 53-104 60-108 (863)
26 1wjo_A T-plastin; CH domain, a 80.7 1.4 4.7E-05 32.0 3.4 45 55-103 67-114 (124)
27 3hoc_A Filamin-A; calponin hom 79.9 2.5 8.6E-05 33.8 5.0 48 54-104 102-149 (272)
28 1pxy_A Fimbrin-like protein; c 73.6 3.2 0.00011 35.3 4.2 46 54-102 331-376 (506)
29 3zyl_A Phosphatidylinositol-bi 67.7 3.2 0.00011 33.2 2.7 23 56-79 248-270 (271)
30 1wyl_A NEDD9 interacting prote 63.9 9 0.00031 26.6 4.2 46 57-104 62-107 (116)
31 3l23_A Sugar phosphate isomera 63.7 15 0.00052 28.1 5.8 54 57-111 105-159 (303)
32 1ow4_A Pheromone binding prote 59.8 6.6 0.00023 27.0 2.8 49 56-104 14-64 (129)
33 1wku_A Alpha-actinin 3; calpon 52.5 14 0.0005 28.6 4.0 43 58-102 196-240 (254)
34 1sh5_A Plectin 1, PLTN, PCN; a 47.2 18 0.00062 27.6 3.7 44 58-103 189-233 (245)
35 2d89_A EHBP1 protein; all alph 46.9 19 0.00066 25.0 3.6 42 58-102 65-108 (119)
36 1tuj_A Odorant binding protein 44.2 14 0.00049 24.9 2.5 47 57-104 9-59 (123)
37 2vg0_A Short-chain Z-isoprenyl 44.0 19 0.00065 28.1 3.5 44 57-104 31-76 (227)
38 1sv0_A ETS DNA-binding protein 43.4 15 0.00052 24.7 2.5 24 56-79 12-35 (85)
39 3obe_A Sugar phosphate isomera 42.7 35 0.0012 26.1 4.8 52 58-110 112-164 (305)
40 2wcj_A General odorant-binding 42.6 13 0.00045 26.3 2.2 45 59-103 9-59 (141)
41 1dxx_A Dystrophin; structural 42.5 31 0.0011 26.4 4.4 44 58-103 192-236 (246)
42 4dot_A Group XVI phospholipase 41.9 11 0.00037 27.7 1.7 26 58-87 109-134 (140)
43 4b7l_A Filamin-B; structural p 41.9 39 0.0013 27.5 5.2 48 54-104 72-119 (347)
44 1ji7_A ETS-related protein TEL 41.3 19 0.00064 24.4 2.7 24 56-79 14-37 (89)
45 3u0h_A Xylose isomerase domain 41.1 25 0.00084 25.6 3.5 51 59-110 83-136 (281)
46 3ngf_A AP endonuclease, family 40.3 1.1E+02 0.0036 22.4 7.0 52 58-110 91-145 (269)
47 2qar_B Telsam domain; polymer, 39.1 21 0.00072 24.3 2.7 24 56-79 14-37 (93)
48 1x66_A Friend leukemia integra 39.1 17 0.00059 25.0 2.2 24 56-79 26-49 (98)
49 1aoa_A T-fimbrin; actin-bindin 38.9 31 0.0011 26.8 3.9 40 57-100 232-271 (275)
50 1sxe_A Transcriptional regulat 38.1 17 0.00058 25.0 2.1 24 56-79 29-52 (97)
51 2d88_A Protein mical-3; all al 37.7 41 0.0014 23.4 4.1 46 57-104 64-111 (121)
52 3zym_A Phosphatidylinositol-bi 35.9 19 0.00063 29.2 2.3 21 56-77 248-268 (310)
53 1sxd_A GA repeat binding prote 34.6 25 0.00087 23.9 2.5 24 56-79 25-48 (91)
54 1dqe_A PBP, pheromone-binding 34.2 13 0.00046 26.0 1.0 45 59-103 9-59 (137)
55 3r72_A Odorant binding protein 33.4 25 0.00086 23.3 2.3 47 58-104 8-56 (122)
56 3cz1_A Pheromone-binding prote 33.4 11 0.00038 25.0 0.5 47 58-104 9-57 (119)
57 3q8i_A Odorant binding protein 33.3 28 0.00096 23.2 2.6 46 59-104 7-56 (124)
58 2jv3_A ETS1 proto-oncogene; ET 32.6 23 0.00077 24.9 2.0 25 56-80 43-67 (110)
59 3r1p_A Odorant binding protein 31.2 24 0.00082 24.0 1.9 48 57-104 9-58 (127)
60 3s0a_A OBP14; all helical prot 30.9 23 0.00079 23.8 1.8 48 57-104 5-55 (119)
61 3ugs_B Undecaprenyl pyrophosph 30.5 50 0.0017 26.0 3.9 47 54-104 31-79 (225)
62 4h8e_A Undecaprenyl pyrophosph 30.4 40 0.0014 27.0 3.4 45 56-104 51-97 (256)
63 2ytu_A Friend leukemia integra 30.0 29 0.00099 25.2 2.3 49 56-104 40-103 (128)
64 2d87_A Smoothelin splice isofo 29.6 51 0.0017 23.2 3.5 45 57-103 62-108 (128)
65 2vzc_A Alpha-parvin; membrane, 28.3 69 0.0024 22.5 4.0 46 54-102 78-123 (131)
66 3ogn_A Odorant-binding protein 28.2 44 0.0015 22.5 2.8 50 55-104 11-62 (124)
67 2vg3_A Undecaprenyl pyrophosph 27.9 47 0.0016 27.0 3.4 28 58-86 84-113 (284)
68 2dkx_A SAM pointed domain-cont 27.7 23 0.00079 24.2 1.3 24 56-79 26-49 (96)
69 3tva_A Xylose isomerase domain 27.6 48 0.0016 24.4 3.2 50 58-110 100-153 (290)
70 2q02_A Putative cytoplasmic pr 27.3 64 0.0022 23.3 3.8 51 57-110 82-134 (272)
71 4dpz_X HRAS-like suppressor 2; 26.0 30 0.001 25.2 1.7 23 59-83 110-132 (137)
72 2wa7_A Filamin-B; disease muta 24.8 58 0.002 24.9 3.3 41 57-99 196-237 (245)
73 4b7l_A Filamin-B; structural p 24.5 73 0.0025 25.8 4.0 43 58-102 194-237 (347)
74 1wyq_A Spectrin beta chain, br 23.8 1.1E+02 0.0038 21.3 4.4 45 58-104 63-108 (127)
75 4ffb_C Protein STU2; tubulin f 23.1 50 0.0017 24.6 2.6 59 57-117 118-179 (278)
76 2d2r_A Undecaprenyl pyrophosph 22.5 64 0.0022 25.5 3.2 29 57-86 43-73 (245)
77 3dx5_A Uncharacterized protein 21.7 62 0.0021 23.7 2.8 53 57-110 81-137 (286)
78 1hx8_A Synapse-enriched clathr 21.7 49 0.0017 26.3 2.4 41 56-102 255-295 (299)
79 3v2l_A AGAP005208-PA; odorant 21.7 52 0.0018 21.4 2.2 45 60-104 8-54 (120)
80 1i60_A IOLI protein; beta barr 21.5 69 0.0024 23.0 3.0 52 58-110 82-137 (278)
81 1k77_A EC1530, hypothetical pr 21.3 93 0.0032 22.3 3.7 52 57-109 82-137 (260)
82 3fiq_A OBP1, RCG36470, odorant 20.8 57 0.0019 22.8 2.3 24 59-83 126-149 (157)
83 3qas_B Undecaprenyl pyrophosph 20.6 42 0.0014 26.7 1.8 28 57-85 45-74 (253)
84 3omt_A Uncharacterized protein 20.2 57 0.002 19.2 2.0 24 61-85 49-72 (73)
No 1
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.92 E-value=7.8e-26 Score=168.85 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=72.8
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| ++||.+++.+ ..+| | ++. +.+.++|++||||++||+||++ |||++.++||
T Consensus 43 GvvLC-kL~N~l~P~~----------~~~I-----~------~ki--n~~~~~f~~~eNI~~FL~ac~~-~Gv~~~~lF~ 97 (144)
T 1ujo_A 43 GVILS-KLVNSLYPEG----------SKPV-----K------VPE--NPPSMVFKQMEQVAQFLKAAED-YGVIKTDMFQ 97 (144)
T ss_dssp SHHHH-HHHHHHSCTT----------TCCS-----C------CCS--SCCCSHHHHHHHHHHHHHHHHH-HTCCSSSCCC
T ss_pred hHHHH-HHHHHhCccc----------CCCc-----c------eee--cCCCchhHHHHHHHHHHHHHHH-cCcCccccCC
Confidence 37899 9999996411 0111 1 122 2445789999999999999998 9999999999
Q ss_pred ccccccccChhHHHHHHHHHHc-cccCC-----C-CCCCCcc
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS-GEKFE-----I-SKTPPKK 117 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g-----~-~~~gpk~ 117 (128)
|+||||+||+.+|+.||++|+| |.+.| + |..+||+
T Consensus 98 t~DL~e~kn~~~V~~cL~aL~~~a~~~~~~~~~g~P~~~~k~ 139 (144)
T 1ujo_A 98 TVDLYEGKDMAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKS 139 (144)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHCSSCCSSCSTTTCSS
T ss_pred hhHHHhcCCHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 9999999999999999999999 87554 3 8888886
No 2
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.3e-24 Score=163.85 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=73.2
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| ++||.+.+.+ ..+++ .| +.++++|++||||++||+||++ |||+++++||
T Consensus 51 GvvLC-kL~N~l~P~~----------~~~i~----------kI----n~~~~~F~~~eNI~~FL~ac~~-~Gv~~~~lF~ 104 (155)
T 1wym_A 51 GTVLC-ELINALYPEG----------QAPVK----------KI----QASTMAFKQMEQISQFLQAAER-YGINTTDIFQ 104 (155)
T ss_dssp SHHHH-HHHHHHSCTT----------TCSCC----------CC----CCCCCHHHHHHHHHHHHHHHHH-HTCCTTTCCC
T ss_pred hHHHH-HHHHHhcccc----------CCCcC----------cc----cCCCccccHHHHHHHHHHHHHH-cCCCccccCC
Confidence 37899 9999996531 12221 12 2345789999999999999998 9999999999
Q ss_pred ccccccccChhHHHHHHHHHHc-cccCC-CCCCC-----Ccc
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS-GEKFE-ISKTP-----PKK 117 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g-~~~~g-----pk~ 117 (128)
|+||||+||+.+|+.||++|+| |.++| .+.+| ||+
T Consensus 105 t~DL~e~kn~~~Vi~cL~aL~~~a~~~~~gp~~g~p~~~~k~ 146 (155)
T 1wym_A 105 TVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKK 146 (155)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTTCSSSCCCSCSSSSCCC
T ss_pred hHHHHhcCCHHHHHHHHHHHHHHHHHCCCCCcCCCCCCCCcc
Confidence 9999999999999999999999 88877 46666 776
No 3
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-24 Score=161.33 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=72.4
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| +++|.+.+ .+++ .| +.++++|++||||++||+||++ |||+++++|+
T Consensus 45 GvvLC-kL~N~l~P-------------~~v~----------ki----~~~~~~f~~~eNI~~Fl~a~~~-~Gv~~~~lF~ 95 (136)
T 1wyp_A 45 GIILC-EFINKLQP-------------GSVK----------KI----NESTQNWHQLENIGNFIKAITK-YGVKPHDIFE 95 (136)
T ss_dssp SHHHH-HHHHHHST-------------TSSS----------CC----CCSSCSHHHHHHHHHHHHHHHH-HTCCGGGCCC
T ss_pred HHhHH-HHHHhhCC-------------CCcc----------cc----cccccchHHHHHHHHHHHHHHH-cCCCcccccC
Confidence 37899 99999954 1221 11 2335689999999999999997 9999999999
Q ss_pred ccccccccChhHHHHHHHHHHc-cccCC-CCCCCCcc
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS-GEKFE-ISKTPPKK 117 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g-~~~~gpk~ 117 (128)
|+||||+||+.+|+.||++|+| |.+.| .|.+|||+
T Consensus 96 ~~DL~e~kn~~~V~~cL~aL~~~a~~~g~~p~~g~k~ 132 (136)
T 1wyp_A 96 ANDLFENTNHTQVQSTLLALASMAKTKGNKVNVGVSG 132 (136)
T ss_dssp HHHHHSCSCSHHHHHHHHHHHHHHHHHTCCCCCCCCS
T ss_pred chHHhcCCCHHHHHHHHHHHHHHHHHCCCCCcCcccc
Confidence 9999999999999999999999 87766 57788886
No 4
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.90 E-value=1.9e-24 Score=161.92 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=73.6
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| ++||.+.+ .+++ .| +.++++|++||||++||+||++ |||+++++|+
T Consensus 45 GvvLC-kL~N~l~P-------------~~v~----------ki----n~~~~~f~~~eNI~~FL~a~~~-~Gv~~~~lF~ 95 (146)
T 1wyn_A 45 GTILC-TLMNKLQP-------------GSVP----------KI----NRSMQNWHQLENLSNFIKAMVS-YGMNPVDLFE 95 (146)
T ss_dssp TSHHH-HHHHHHCT-------------TSCS----------CC----CCSSCHHHHHHHHHHHHHHHHH-HTCCSSSCCC
T ss_pred HHHHH-HHHHHhCC-------------CCcc----------cc----ccccccccHHHHHHHHHHHHHH-cCCCcccccC
Confidence 37899 99999954 1221 11 2335689999999999999997 9999999999
Q ss_pred ccccccccChhHHHHHHHHHHc-cccCCC---CCCCCccc
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS-GEKFEI---SKTPPKKL 118 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g~---~~~gpk~~ 118 (128)
|+||||+||+.+|+.||++|+| |.+.|+ +.+|||+-
T Consensus 96 ~~DL~e~kn~~~V~~cL~aL~~~a~~~g~~~~p~~g~k~a 135 (146)
T 1wyn_A 96 ANDLFESGNMTQVQVSLLALAGKAKTKGLQSGVDIGVKYS 135 (146)
T ss_dssp HHHHHTCSCSHHHHHHHHHHHHHHGGGTSCCCSCCCCCCC
T ss_pred hhHHHhcCChHHHHHHHHHHHHHHHhCCCCCCCccceecc
Confidence 9999999999999999999999 988874 78888863
No 5
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.89 E-value=2.7e-24 Score=166.89 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=69.5
Q ss_pred cccchHHHhhHHHHHHHHHHhhhhcCCcc--cccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccc
Q psy610 4 LFFCPQHANNVRRYAEEHMAKRQAQGKDV--HSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLF 81 (128)
Q Consensus 4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~--~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LF 81 (128)
++|| ++||.+.+ .++ +.|+. .+..+++. +.++|++||||++||+||++ ||||++++|
T Consensus 56 vvLC-kL~N~l~P-------------~sv~~~kI~~----~~~~~~~~--~~~~f~~~eNI~~FL~ac~~-~Gvp~~~lF 114 (190)
T 2rr8_A 56 VYLA-KLGNFFSP-------------KVVSLKKIYD----REQTRYKA--TGLHFRHTDNVIQWLNAMDE-IGLPKIFYP 114 (190)
T ss_dssp HHHH-HHHHHSCT-------------TTSCSSCSST----TTCHHHHH--TCCCSSTHHHHHHHHHGGGG-TTCCSTTCC
T ss_pred hhHH-HHHHHhCC-------------CCcccccccc----cccccccC--CCCcchHHHHHHHHHHHHHH-cCCCccccC
Confidence 6899 99999965 122 12221 11222332 35689999999999999998 999999999
Q ss_pred cccccccccChhHHHHHHHHHHc-cccCCC
Q psy610 82 ETDDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 82 qT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
||+||||+||+.+|+.||++|+| |+++|+
T Consensus 115 et~DL~e~kn~~~Vi~cL~aL~~~a~~~g~ 144 (190)
T 2rr8_A 115 ETTDIYDRKNMPRCIYCIHALSLYLFKLGL 144 (190)
T ss_dssp CHHHHTCTTCCHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999 999885
No 6
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.88 E-value=1.7e-23 Score=158.43 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=67.7
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| ++||.+.+ .+++. |. .++.++|++||||++||+||++ ||||++++|+
T Consensus 41 GvvLC-kL~N~l~P-------------~~i~k----------I~---~~~~~~f~~~eNI~~FL~a~~~-~Gv~~~~lF~ 92 (159)
T 1p2x_A 41 GVVLA-LLVQKFQP-------------DKLIK----------IF---YSNELQFRHSDNINKFLDFIHG-IGLPEIFHFE 92 (159)
T ss_dssp SHHHH-HHHHHHCT-------------TSCCC----------CC---CCSSCCTTHHHHHHHHHHHHHH-TTCCGGGCCC
T ss_pred hHHHH-HHHHHhCC-------------CCccc----------cc---cccCCcchHHHHHHHHHHHHHH-cCCCcccccC
Confidence 47899 99999965 12221 11 1235689999999999999997 9999999999
Q ss_pred ccccccccChhHHHHHHHHHHc-cccCCC
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
|+||||+||+.+|+.||++|+| +.+.|+
T Consensus 93 ~~DL~e~kn~~~Vi~~L~aL~~~~~~~g~ 121 (159)
T 1p2x_A 93 LTDIYEGKNLPKVIYCIHALSYFLSMQDL 121 (159)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999 988884
No 7
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.88 E-value=1.5e-23 Score=149.41 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=64.5
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| ++||.+.+ .+++ .| +.++++|++||||++||+||++ |||+++++|+
T Consensus 31 GvvLC-kL~N~l~P-------------~~v~----------ki----~~~~~~f~~~eNI~~Fl~a~~~-~Gv~~~~lF~ 81 (108)
T 1h67_A 31 GVILC-ELINKLQP-------------GSVQ----------KV----NDPVQNWHKLENIGNFLRAIKH-YGVKPHDIFE 81 (108)
T ss_dssp CSHHH-HHHHHHST-------------TSST----------TC----CCTTSSHHHHHHHHHHHHHHHH-HTSCGGGSCC
T ss_pred HHHHH-HHHHHhCC-------------CCcc----------cc----cccccchHHHHHHHHHHHHHHH-cCCCcccccC
Confidence 37899 99999954 1221 11 2345689999999999999997 9999999999
Q ss_pred ccccccccChhHHHHHHHHHHc-ccc
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS-GEK 107 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R-a~~ 107 (128)
|+||||+||+++|+.||++|+| |.+
T Consensus 82 ~~DL~e~kn~~~V~~~l~aL~~~a~~ 107 (108)
T 1h67_A 82 ANDLFENTNHTQVQSTLIALASQAKT 107 (108)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHhCCChHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999 753
No 8
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.88 E-value=7.8e-24 Score=165.38 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=72.1
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCccc--ccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVH--SIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLL 80 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~--~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~L 80 (128)
.++|| ++||.|++ .++| .|+ ..+.++|+.+ +++|++||||++||+||++ ||||++++
T Consensus 77 GvvLC-kL~N~l~P-------------g~vp~kkI~----~~~~~~~~~~--~~~F~~~eNI~~FL~ac~~-~Gvp~~~l 135 (193)
T 3i6x_A 77 GVYLA-KLGNFFSP-------------KVVSLKKIY----DREQTRYKAT--GLHFRHTDNVIQWLNAMDE-IGLPKIFY 135 (193)
T ss_dssp SHHHH-HHHHHHCT-------------TTCCGGGST----TTTCHHHHHS--CCCGGGHHHHHHHHHHHHH-HTCCGGGC
T ss_pred HHHHH-HHHHHHCC-------------CCCCccccC----CcccccccCc--ccchHHHHHHHHHHHHHHH-cCCCcccC
Confidence 37999 99999975 2222 221 1223444443 4689999999999999997 99999999
Q ss_pred ccccccccccChhHHHHHHHHHHc-cccCCCC
Q psy610 81 FETDDLIMRKNEKHVILCLLEIIS-GEKFEIS 111 (128)
Q Consensus 81 FqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~~ 111 (128)
|+|+||||+||+++|+.||++|+| +.++|+.
T Consensus 136 Fet~DL~e~kn~~~V~~cL~aL~~~a~~~G~~ 167 (193)
T 3i6x_A 136 PETTDIYDRKNMPRCIYCIHALSLYLFKLGLA 167 (193)
T ss_dssp CCHHHHHSCSCHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCcHHHhcCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999 9999985
No 9
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.86 E-value=1.9e-22 Score=158.45 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=67.7
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
-++|| ++||.|.+ .+++ .|. ..+.++|++||||++||+||++ |||+++++||
T Consensus 85 GvvLC-kLiN~l~P-------------~sv~----------kI~---~~s~~~f~~~eNI~~FL~ac~~-~Gvp~~~lF~ 136 (203)
T 1p5s_A 85 GVVLA-LLVQKFQP-------------DKLI----------KIF---YSNELQFRHSDNINKFLDFIHG-IGLPEIFHFE 136 (203)
T ss_dssp SHHHH-HHHHHHCT-------------TSCC----------CCC---CCSSSCCCHHHHHHHHHHHHHH-TTCCGGGCCC
T ss_pred hHHHH-HHHHHhCC-------------CCcc----------ccc---CCCCCcchHHHHHHHHHHHHHH-cCCCcccccC
Confidence 37899 99999964 1221 121 1235589999999999999997 9999999999
Q ss_pred ccccccccChhHHHHHHHHHHc-cccCCC
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
|+||||+||+.+|+.||++|+| +.+.|+
T Consensus 137 t~DL~e~kn~~~Vi~~L~aL~~~a~~~g~ 165 (203)
T 1p5s_A 137 LTDIYEGKNLPKVIYCIHALSYFLSMQDL 165 (203)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999 988886
No 10
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-21 Score=143.81 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=50.0
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccCCC
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
++|++||||++||+||++.+|+ ++|||+||||+||+.+|+.||++|+| ++++|+
T Consensus 72 ~~f~~~eNI~~FL~a~~~~~g~---~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~G~ 126 (126)
T 2l3g_A 72 SESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFNKVLSSLVTLNKVTADIGL 126 (126)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCC---CCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHHHHhCCC---CccCHHHHHhCCCHHHHHHHHHHHHHHHHHccC
Confidence 4799999999999999964775 99999999999999999999999999 999884
No 11
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-21 Score=138.74 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=48.2
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccC
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKF 108 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~ 108 (128)
++|++||||++||+||++ ||+ ++|||+||||+||+++|+.||++|+| ++++
T Consensus 66 ~~f~~~eNI~~FL~a~~~-~g~---~~F~~~DL~e~kn~~~V~~cL~aL~~~~~~~ 117 (121)
T 1wyr_A 66 TEADCINNINDFLKGCAT-LQV---EIFDPDDLYSGVNFSKVLSTLLAVNKATESG 117 (121)
T ss_dssp SHHHHHHHHHHHHHHHHH-HTC---CCCCHHHHHTCSCHHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHH-cCC---CccCHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 479999999999999998 997 89999999999999999999999999 8774
No 12
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.74 E-value=8.7e-19 Score=151.27 Aligned_cols=89 Identities=22% Similarity=0.304 Sum_probs=67.0
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.++|| ++||.+++ .+++ .+.|. ...+...|++||||++||+||++.||||+.++|+
T Consensus 43 G~~Lc-~l~n~l~p-------------~~v~--------~~~~~--~~~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~ 98 (587)
T 3ky9_A 43 GVLLC-QLLNNLLP-------------HAIN--------LREVN--LRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFE 98 (587)
T ss_dssp THHHH-HHHHHHST-------------TSSC--------GGGSC--SSCTTBHHHHHHHHHHHHHHHHHTTCCCTTSSCC
T ss_pred HHHHH-HHHHHhCC-------------CCCC--------ccccC--CCccccchHHHHHHHHHHHHHHHHcCCCHHHcCC
Confidence 47899 99999965 1221 11121 1122235999999999999994449999999999
Q ss_pred ccccccccChhHHHHHHHHHHc---cccCCCCCCCC
Q psy610 83 TDDLIMRKNEKHVILCLLEIIS---GEKFEISKTPP 115 (128)
Q Consensus 83 T~DL~e~kn~~~Vv~cL~~l~R---a~~~g~~~~gp 115 (128)
|+||||+||+.+|+.||.+|+| |.+.|+...+.
T Consensus 99 ~~Dl~~~~~~~~V~~~l~~l~~~~~~~~~g~~~fp~ 134 (587)
T 3ky9_A 99 AFDLFDVQDFGKVIYTLSALSWTPIAQNRGIMPFPT 134 (587)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHSTTTGGGTCCCC--
T ss_pred chhhhccCCcchHHHHHHHHhhhhhhhccCCCCCCC
Confidence 9999999999999999999998 45667654443
No 13
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=5.8e-07 Score=64.79 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=45.0
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.+.|+.+|||+.||+++++ +||+.+.+ .++|+++ .|.+.++.+|..|.|
T Consensus 73 ~~~~~~~eNv~~aL~~~~~-~gv~~~~i-~~~DI~d-gn~~~iL~Llw~L~r 121 (129)
T 2yrn_A 73 KNRSQMIENIDACLNFLAA-KGINIQGL-SAEEIRN-GNLKAILGLFFSLSR 121 (129)
T ss_dssp CSTTHHHHHHHHHHHHHHH-HTCCCTTC-CHHHHHH-TCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH-hCCcccCC-Chhhhhc-CCHhHHHHHHHHHHH
Confidence 3589999999999999997 99998887 6999997 889999999999998
No 14
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=97.92 E-value=6.8e-06 Score=70.44 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=34.3
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccCh
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNE 92 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~ 92 (128)
..|+++|||+.||++|+. +|++.+.+ +++||+|+++.
T Consensus 73 ~~~~~~eNi~~~L~~~k~-~g~~~~~i-~~~Dl~dg~~~ 109 (506)
T 1pxy_A 73 NPWERNENHTLCLNSAKA-VGCSVVNI-GTQDLAEGRPH 109 (506)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCCCTTC-CHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHHHH-hCCCcCCC-CHHHHhcCChH
Confidence 369999999999999997 99999998 99999999983
No 15
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=97.25 E-value=0.00033 Score=55.37 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.+.|+++|||+.||+++++ +||+-+.. +++|++++ |.+.++--|..+-|
T Consensus 79 ~~~~~~~eNi~~aL~~~k~-~gv~lv~I-~~~DIvdG-~~kliLgLlW~li~ 127 (254)
T 1wku_A 79 KMRFHKIANVNKALDFIAS-KGVKLVSI-GAEEIVDG-NLKMTLGMIWTIIL 127 (254)
T ss_dssp CSHHHHHHHHHHHHHHHHT-TTCCCCSC-CHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ccHHHHHHhHHHHHHHHHH-cCCCccCC-CHHHHhcc-chHHHHHHHHHHHH
Confidence 4579999999999999997 99998776 99999987 45666555555544
No 16
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.00 E-value=0.00038 Score=59.81 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
...|+++|||+.||++++. +|+....-|+++||++++. +-++--|..+-|
T Consensus 80 ~~~~~~~eNi~~~L~~~k~-~g~~~l~~i~~~DI~dg~~-~liLgLiW~li~ 129 (513)
T 1rt8_A 80 LDNFKCIENNNVVINSAKA-MGGISITNIGAGDILEGRE-HLILGLVWQIIR 129 (513)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HSSCCCSSCCHHHHHTTCH-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH-cCCCccCCcCHHhhhcCCH-HHHHHHHHHHHH
Confidence 4579999999999999997 9998888899999999876 444444445554
No 17
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=96.95 E-value=0.00072 Score=53.64 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=37.6
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
..|+.+|||+.||+++++ +|++-+. .+++|+++++. +.++--|..+.|
T Consensus 89 ~~~~~~eNv~~aL~~~k~-~g~~l~~-I~~~DIvdg~~-~liLgLlw~li~ 136 (275)
T 1aoa_A 89 TPFIIQENLNLALNSASA-IGCHVVN-IGAEDLRAGKP-HLVLGLLWQIIK 136 (275)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTTCH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-cCCcccC-CCHHHHHcCcH-HHHHHHHHHHHH
Confidence 369999999999999997 9998877 49999999875 444444444443
No 18
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=96.73 E-value=0.0015 Score=51.12 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=37.3
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHH
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII 103 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~ 103 (128)
+.|+.+||++.||+++++ +|++-+. ++++|+++++- +.++--|..+.
T Consensus 69 ~~~~~~eNv~~aL~~~k~-~g~~l~~-I~~~DIvdg~~-~liL~Llw~li 115 (246)
T 1dxx_A 69 TRVHALNNVNKALRVLQN-NNVDLVN-IGSTDIVDGNH-KLTLGLIWNII 115 (246)
T ss_dssp SHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTTCH-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-cCCcccc-CCHHHhhcccH-HHHHHHHHHHH
Confidence 479999999999999997 9999877 89999999864 44444444443
No 19
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=96.57 E-value=0.0028 Score=49.59 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=38.8
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
+.|+.+|||+.||+++++ +|++.+.. +++|+++++- +.++--|..|-|
T Consensus 75 ~~~~~~eNv~~aL~~~k~-~g~~lv~I-~~~DIvdG~~-kliLgLlW~li~ 122 (245)
T 2wa7_A 75 FRQMQLENVSVALEFLDR-ESIKLVSI-DSKAIVDGNL-KLILGLVWTLIL 122 (245)
T ss_dssp SHHHHHHHHHHHHHHHHH-TTCCCCSC-CHHHHHTTCH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-cCCcccCC-CHHHhhCCCH-HHHHHHHHHHHH
Confidence 469999999999999998 99987765 8999999874 555555555555
No 20
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.0021 Score=49.09 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=48.4
Q ss_pred cccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccc
Q psy610 4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFET 83 (128)
Q Consensus 4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT 83 (128)
.++| |+.|.|.+ .+ +| ...|+|..+. .|..++|+..|.+++++ +||++ -+..
T Consensus 49 aayC-QLmd~L~P-------------gs-----V~---l~KVkf~a~~---e~e~~~N~k~lQ~af~k-~gV~k--~ipV 100 (159)
T 1wyo_A 49 AAYC-QFMDMLFP-------------GC-----VH---LRKVKFQAKL---EHEYIHNFKVLQAAFKK-MGVDK--IIPV 100 (159)
T ss_dssp HHHH-HHHHHHST-------------TS-----SC---TTSCCTTCCS---SHHHHHHHHHHHHHHHH-HTCCC--CCCH
T ss_pred HHHH-HHHHHHcc-------------CC-----Cc---HhhhccCCCC---hHHHHHHHHHHHHHHHH-cCCCC--ccCH
Confidence 5789 99999854 12 23 5678877664 59999999999999998 99997 4888
Q ss_pred cccccccC
Q psy610 84 DDLIMRKN 91 (128)
Q Consensus 84 ~DL~e~kn 91 (128)
+.|+-+|-
T Consensus 101 ~kLvkgk~ 108 (159)
T 1wyo_A 101 EKLVKGKF 108 (159)
T ss_dssp HHHTTTCS
T ss_pred HHHhcCCc
Confidence 99999885
No 21
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=96.45 E-value=0.001 Score=48.71 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=47.2
Q ss_pred ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610 3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE 82 (128)
Q Consensus 3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq 82 (128)
.+++| |+.|.|.+ .+ +| ...|+|.++ +.|..++|+..|.+++++ +||+.. +.
T Consensus 31 Ga~yC-qlmd~l~P-------------g~-----v~---l~KVkf~a~---~e~e~~~N~k~lq~af~k-~gV~k~--i~ 82 (123)
T 2qjz_A 31 GAAYC-QFMDMLFP-------------GS-----IA---LKKVKFQAK---LEHEYIQNFKILQAGFKR-MGVDKI--IP 82 (123)
T ss_dssp SHHHH-HHHHHHST-------------TS-----SC---GGGCCTTCC---SHHHHHHHHHHHHHHHHH-HTCCCC--CC
T ss_pred hHHHH-HHHHHHcc-------------CC-----Cc---HHHhccCCC---ChHHHHHHHHHHHHHHHH-cCCCCc--cC
Confidence 36789 99999854 12 23 456777655 359999999999999998 999974 78
Q ss_pred ccccccccC
Q psy610 83 TDDLIMRKN 91 (128)
Q Consensus 83 T~DL~e~kn 91 (128)
.+.|+-+|-
T Consensus 83 v~kLvkgk~ 91 (123)
T 2qjz_A 83 VDKLVKGKF 91 (123)
T ss_dssp HHHHTTCCH
T ss_pred HHHHHcCCc
Confidence 888888884
No 22
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=96.37 E-value=0.0035 Score=48.76 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=40.2
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
..|+.+|||+.+|+++++ +|++-+.. +++|++++.- +.++--|..|.|
T Consensus 69 ~~~~~~eNv~~aL~~~k~-~g~~l~~I-~~~DIvdg~~-k~iLgLlw~li~ 116 (245)
T 1sh5_A 69 MRFHKLQNVQIALDYLRH-RQVKLVNI-RNDDIADGNP-KLTLGLIWTIIL 116 (245)
T ss_dssp SHHHHHHHHHHHHHHHHH-TTCCCCSC-CHHHHHTTCH-HHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHH-cCCcccCC-ChHhhhcccH-HHHHHHHHHHHH
Confidence 579999999999999997 99998887 9999999864 666666666665
No 23
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=95.10 E-value=0.024 Score=48.62 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=39.2
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.+.|+.+|||+.+|+++++ +||+-+. ++++|+++++- +.++--|..+.|
T Consensus 343 ~~r~~~~eNv~~al~~~~~-~gv~lv~-i~~~DIvdg~~-~~~LgLlW~li~ 391 (513)
T 1rt8_A 343 MMRFKAVENCNYAVDLGKN-QGFSLVG-IQGADITDGSR-TLTLALVWQMMR 391 (513)
T ss_dssp CCHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTTCH-HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH-cCceeec-cchhhhhcCCc-hhhHHHHHHHHH
Confidence 3579999999999999997 9998776 99999999863 555555555555
No 24
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=93.95 E-value=0.07 Score=43.54 Aligned_cols=49 Identities=22% Similarity=0.158 Sum_probs=39.3
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.+.|+.+|||+.+|+++++ +||+-+. -...|++++ |.+.++-.|..|-|
T Consensus 124 ~~r~~kleNvn~aL~~lk~-~gv~lv~-I~~~DIvdG-n~kliLgLlW~Li~ 172 (296)
T 3f7p_A 124 RMRFHKLQNVQIALDYLRH-RQVKLVN-IRNDDIADG-NPKLTLGLIWTIIL 172 (296)
T ss_dssp SSHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTT-CHHHHHHHHHHHHH
T ss_pred cChhhhhhhHHHHHHHHHH-hCccccC-CChhhhhcc-chHHHHHHHHHhhc
Confidence 3579999999999999997 9997654 577899998 55777666666766
No 25
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=90.48 E-value=0.73 Score=40.63 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=39.8
Q ss_pred CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
...|+.++||+.+|++++. .||+-+. -.+.|++++ |.+.++--|..|-|
T Consensus 60 ~~~~~~~eN~~~~l~~~~~-~g~~~~~-i~~~di~~g-~~~~~l~l~w~l~~ 108 (863)
T 1sjj_A 60 KMRVHKISNVNKALDFIAS-KGVKLVS-IGAEEIVDG-NVKMTLGMIWTIIL 108 (863)
T ss_dssp SSHHHHHHHHHHHHHHHHH-TTCCCTT-CCSHHHHTT-CHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHH-cCCccCC-CChHHhhcC-CHHHHHHHHHHHHH
Confidence 4579999999999999997 9997654 578899988 55777777777776
No 26
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=80.70 E-value=1.4 Score=31.97 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=34.3
Q ss_pred ChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhH---HHHHHHHHH
Q psy610 55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKH---VILCLLEII 103 (128)
Q Consensus 55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~---Vv~cL~~l~ 103 (128)
....++|....|+.+|+ +|++- +-..+|++|. |++. ++.||+..+
T Consensus 67 ~~d~~~Na~~ais~Ark-lG~~~--~l~pEDIve~-~pK~ilt~va~l~~~~ 114 (124)
T 1wjo_A 67 EDDKHNNAKYAVSMARR-IGARV--YALPEDLVEV-KPKMVMTVFACLMGRG 114 (124)
T ss_dssp HHHHHHHHHHHHHHHHH-TCCSC--CCCHHHHHHT-CTTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH-cCCCc--ccCHHHHhcC-cchhhHHHHHHHHHHH
Confidence 36778999999999998 99985 7789999988 4454 445555443
No 27
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=79.87 E-value=2.5 Score=33.78 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=36.7
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
..|+.+||++.+|+++++ .|++-+. -.+.|++++. .+.++-.|..+-+
T Consensus 102 ~r~~kleNv~~aL~~lk~-~gv~lvn-I~~~DIvdGn-~kliLgLlW~Li~ 149 (272)
T 3hoc_A 102 FRQMQLENVSVALEFLDR-ESIKLVS-IDSKAIVDGN-LKLILGLIWTLIL 149 (272)
T ss_dssp SHHHHHHHHHHHHHHHHH-TTCCCSS-CCHHHHHTTC-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-cCCcccc-cccchhhcCC-HHHHHHHHHHHHH
Confidence 468899999999999997 9997654 4588999885 3556555555555
No 28
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=73.56 E-value=3.2 Score=35.30 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=33.7
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHH
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l 102 (128)
+.|+.+||++.+|+++++ .||.-+ --.+.|++++.. +.++--|..+
T Consensus 331 ~r~~~leNv~~aL~~~k~-~~v~l~-~I~~~dIvdg~~-kl~L~Liw~l 376 (506)
T 1pxy_A 331 MPFRKVENCNQVIKIGKQ-LKFSLV-NVAGNDIVQGNK-KLILGLLWQL 376 (506)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCCCC-SCCHHHHHTTCH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-cCCccc-CCCHHHHhcCCH-HHHHHHHHHH
Confidence 579999999999999997 999654 357889988753 4443333333
No 29
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=67.66 E-value=3.2 Score=33.16 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=19.9
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
-+|.|.+..|+.||++ +||...|
T Consensus 248 ~~Q~~~L~~Fy~~ck~-~gi~~~~ 270 (271)
T 3zyl_A 248 LTRMTRISEFLKVAEQ-VGIDRGD 270 (271)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCGGG
T ss_pred HHHHHHHHHHHHHHHH-cCcCcCC
Confidence 4688999999999998 9997655
No 30
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=63.93 E-value=9 Score=26.64 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=35.4
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
..++|...=++.+++++||+. +...+|++..-|.+.|+.-+-.+=.
T Consensus 62 ~~~~n~~~af~~Ae~~lgi~~--lL~peD~~~~~d~ksv~tYvs~l~~ 107 (116)
T 1wyl_A 62 GALEATAWALKVAENELGITP--VVSAQAVVAGSDPLGLIAYLSHFHS 107 (116)
T ss_dssp CHHHHHHHHHHHHHHTTCCCC--CSCHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcc--ccCHHHHhcCCchhHHHHHHHHHHH
Confidence 357888888888887799975 6799999987777777776655543
No 31
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=63.74 E-value=15 Score=28.12 Aligned_cols=54 Identities=9% Similarity=-0.111 Sum_probs=39.2
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccCCCC
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKFEIS 111 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~~ 111 (128)
..++.+...|+.|+. +|++-..+.....-......+.++..|-++++ |.++|+.
T Consensus 105 ~~~~~~~~~i~~A~~-lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 159 (303)
T 3l23_A 105 KIMEYWKATAADHAK-LGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIA 159 (303)
T ss_dssp HHHHHHHHHHHHHHH-TTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 347889999999997 99987766432211122345788889999999 8888875
No 32
>1ow4_A Pheromone binding protein; ligand 8-anilino-1-naphtalenesulf acid, transport protein; HET: 2AN; 1.60A {Leucophaea maderae} SCOP: a.39.2.1 PDB: 1p28_A 1org_A
Probab=59.76 E-value=6.6 Score=26.95 Aligned_cols=49 Identities=8% Similarity=0.138 Sum_probs=39.7
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
=..++.+..+...|.++.||++.++ |...+.-+.++.+-.+.|+++-..
T Consensus 14 ~~~~~~~~~~~~~C~~e~gvs~e~i~~~~~~~~~~d~~~kC~~~C~~~k~g 64 (129)
T 1ow4_A 14 QSYKDAMGPLVRECMGSVSATEDDFKTVLNRNPLESRTAQCLLACALDKVG 64 (129)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCCcccCcHHHHHHHHcC
Confidence 4678999999999999999999876 445555566778899999999665
No 33
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=52.53 E-value=14 Score=28.59 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=33.7
Q ss_pred hHhhHHHHHHHHHhcCCCCcccccccccccccc--ChhHHHHHHHHH
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMRK--NEKHVILCLLEI 102 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~k--n~~~Vv~cL~~l 102 (128)
.++|...-++.+++.+||+. +...+|+++.. |.+.|+.-+..+
T Consensus 196 ~~~n~~~a~~~A~~~lGi~~--~l~peDiv~~~~pD~k~imtyva~l 240 (254)
T 1wku_A 196 PIGNLNTAFEVAEKYLDIPK--MLDAEDIVNTPKPDEKAIMTYVSCF 240 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCC--CSCHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCC--cCCHHHHhccCCCcHHHHHHHHHHH
Confidence 57888888999987799985 78999998765 567777666555
No 34
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=47.18 E-value=18 Score=27.59 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=33.5
Q ss_pred hHhhHHHHHHHHHhcCCCCcccccccccccccc-ChhHHHHHHHHHH
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMRK-NEKHVILCLLEII 103 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~k-n~~~Vv~cL~~l~ 103 (128)
..+|....++.+++.+|++. +...+|+.+.+ |.+.++.-+..+=
T Consensus 189 ~~~n~~~a~~~a~~~lGi~~--~l~peDi~~~~pd~k~i~tyva~l~ 233 (245)
T 1sh5_A 189 NLENLDQAFSVAERDLGVTR--LLDPEDVDVPQPDEKSIITYVSSLY 233 (245)
T ss_dssp HHHHHHHHHHHHHHHHCCCC--CCCHHHHSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCc--cCCHHHhccCCCcHHHHHHHHHHHH
Confidence 56799999999986699985 56899998754 6777776666554
No 35
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.91 E-value=19 Score=25.02 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=31.4
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccccc--cChhHHHHHHHHH
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMR--KNEKHVILCLLEI 102 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~--kn~~~Vv~cL~~l 102 (128)
.++|...-++.+++ +||+. +...+|+++. -|.+.|+.-+..+
T Consensus 65 ~~~n~~~af~~a~~-LGi~~--ll~peDi~~~~~pD~ksvmtYvs~l 108 (119)
T 2d89_A 65 IKENNKKAYDGFAS-IGISR--LLEPSDMVLLAIPDKLTVMTYLYQI 108 (119)
T ss_dssp SHHHHHHHHHHHHH-HTCCC--CSCHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCc--ccCHHHHhccCCCcHHHHHHHHHHH
Confidence 46788877777887 99986 6799999864 4777777666554
No 36
>1tuj_A Odorant binding protein Asp2; alpha helix, complex, TSP, transport protein; HET: TSD; NMR {Apis mellifera}
Probab=44.15 E-value=14 Score=24.92 Aligned_cols=47 Identities=9% Similarity=-0.137 Sum_probs=35.0
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccc----cccccChhHHHHHHHHHHc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDD----LIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~D----L~e~kn~~~Vv~cL~~l~R 104 (128)
..++.+..+...|.++.||+ .++.+-.. .-+.++.+-.+.|++.-..
T Consensus 9 ~~~~~~~~~~~~C~~e~gvs-e~i~~~~~~~~~~~~~~~~kC~~~C~~~k~g 59 (123)
T 1tuj_A 9 KYMEYLMPDIMPCADELHIS-EDIATNIQAAKNGADMSQLGCLKACVMKRIE 59 (123)
T ss_dssp HHHHTSHHHHHHHHHHHSSC-TTTTCSSCSSSSSSCSTTHHHHTTHHHHHTT
T ss_pred HHHHHHHHHHHHhhcccCCc-HHHHHHHHhcccCccccccChHHHHHHHHhC
Confidence 45678889999999999998 66644332 4456778889999988544
No 37
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=44.00 E-value=19 Score=28.06 Aligned_cols=44 Identities=18% Similarity=0.532 Sum_probs=32.1
Q ss_pred hhHhhHHHHHHHHHhcCCCCcccccc--ccccccccChhHHHHHHHHHHc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFE--TDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFq--T~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.-.+.+..++.||.+ +||+..-+|. |+.+ ++....| ..||.+.+
T Consensus 31 ~G~~~l~~i~~~c~~-~GI~~lTlYaFSteN~--kRp~~Ev-~~Lm~l~~ 76 (227)
T 2vg0_A 31 MGAAKIAEMLRWCHE-AGIELATVYLLSTENL--QRDPDEL-AALIEIIT 76 (227)
T ss_dssp HHHHHHHHHHHHHHH-HTCSEEEEEEEETGGG--GSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEEeeccccc--CCCHHHH-HHHHHHHH
Confidence 456899999999997 9999999876 5543 3333344 67777765
No 38
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=43.37 E-value=15 Score=24.66 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.4
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=..++|...|.||.++|++++.+
T Consensus 12 ~Ws~~~V~~WL~W~~~ef~L~~i~ 35 (85)
T 1sv0_A 12 LWSREDVLVFLRFCVREFDLPKLD 35 (85)
T ss_dssp GCCHHHHHHHHHHHHHHTTCCCCC
T ss_pred hCCHHHHHHHHHHHHHccCCCCCC
Confidence 445789999999999889998764
No 39
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=42.74 E-value=35 Score=26.11 Aligned_cols=52 Identities=13% Similarity=-0.059 Sum_probs=36.0
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccCCC
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
..+.+...|+.|++ +|++-..+.....-......+.++..|.++++ |.++|+
T Consensus 112 ~~~~~~~~i~~A~~-lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 164 (305)
T 3obe_A 112 FDEFWKKATDIHAE-LGVSCMVQPSLPRIENEDDAKVVSEIFNRAGEITKKAGI 164 (305)
T ss_dssp HHHHHHHHHHHHHH-HTCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36788899999997 99987765322111122345678889999998 887774
No 40
>2wcj_A General odorant-binding protein 1; transport protein, olfaction, transport, disulfide bond, insect pheremone, sensory transduction; HET: M21; 1.40A {Bombyx mori} PDB: 2wc6_A* 2wch_A* 2wck_A 2wcl_A* 2wcm_A* 2wc5_A*
Probab=42.63 E-value=13 Score=26.28 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=32.8
Q ss_pred HhhHHHHHHHHHhcCCCCccccccccc------cccccChhHHHHHHHHHH
Q psy610 59 RDNVSNFIGWSRRGLGVFECLLFETDD------LIMRKNEKHVILCLLEII 103 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~LFqT~D------L~e~kn~~~Vv~cL~~l~ 103 (128)
++++.....-|+++.||++.++-+-.+ ..+..+.+-.+.|++.=.
T Consensus 9 ~~~~~~~~~~C~~E~gvsee~i~~~~~~~~~~~~~~d~~~KC~~~C~~~K~ 59 (141)
T 2wcj_A 9 TAHFGKTLEECREESGLSVDILDEFKHFWSDDFDVVHRELGCAIICMSNKF 59 (141)
T ss_dssp HHHHGGGHHHHHHHHTCCTTTCSSGGGGGCTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhCcCHHHHHHHHHhccccCCCCCcccCCHHHHHHHHc
Confidence 456677788899999999987754433 234566788889988743
No 41
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=42.46 E-value=31 Score=26.39 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=32.2
Q ss_pred hHhhHHHHHHHHHhcCCCCcccccccccccccc-ChhHHHHHHHHHH
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMRK-NEKHVILCLLEII 103 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~k-n~~~Vv~cL~~l~ 103 (128)
..+|.+..++.+++.+|++ .+...+|+.+.+ |.+.++.-+..+=
T Consensus 192 ~~~n~~~a~~~A~~~lGi~--~~l~peDi~~~~pD~k~i~tyva~l~ 236 (246)
T 1dxx_A 192 ATQRLEHAFNIARYQLGIE--KLLDPEDVDTTYPDKKSILMYITSLF 236 (246)
T ss_dssp HHHHHHHHHHHHHHTTCCC--CCCCHHHHSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC--ccCCHHHhhcCCCcHHHHHHHHHHHH
Confidence 4688999999887459998 467889998754 4466666655553
No 42
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=41.91 E-value=11 Score=27.68 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=14.6
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccc
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLI 87 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~ 87 (128)
-..|=+.|-.||| ||.+++ -|..||-
T Consensus 109 l~nNCEHFvt~cr--~G~~~S--~Qv~~~~ 134 (140)
T 4dot_A 109 TSENCEHFVNELR--YGVARS--DQVRDLE 134 (140)
T ss_dssp CHHHHHHHHHHHH--HCCC-----------
T ss_pred cccChHHHHHHHh--cCCccc--chhhhhh
Confidence 3679999999998 699887 4777764
No 43
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=41.89 E-value=39 Score=27.49 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=37.5
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
..++..||++.-|+++++ .|+.-+ --..+|++++. .+.++-.|..|-|
T Consensus 72 ~r~~k~eNv~~al~~~~~-~g~~lv-~i~~~DIvdGn-~~liLgLiW~li~ 119 (347)
T 4b7l_A 72 FRQMQLENVSVALEFLDR-ESIKLV-SIDSKAIVDGN-LKLILGLVWTLIL 119 (347)
T ss_dssp SHHHHHHHHHHHHHHHHH-TTCCCS-SCCHHHHHTTC-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-hccccC-CCCcchhhcCC-HhhHHHHHHHHHH
Confidence 458889999999999997 899754 36888999875 4666666666665
No 44
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=41.34 E-value=19 Score=24.39 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=20.0
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=..++|..+|.|+.++|+++..+
T Consensus 14 ~WS~~~V~~WL~w~~~ef~L~~~~ 37 (89)
T 1ji7_A 14 YWSRDDVAQWLKWAENEFSLRPID 37 (89)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSCCC
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCc
Confidence 445789999999999889997664
No 45
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=41.08 E-value=25 Score=25.63 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc-cccCCC
Q psy610 59 RDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
.+.+...|+.|+. +|++-... +...+-........++..|.++++ |.++|+
T Consensus 83 ~~~~~~~i~~A~~-lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 136 (281)
T 3u0h_A 83 LSLLPDRARLCAR-LGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVELLPLGM 136 (281)
T ss_dssp HHTHHHHHHHHHH-TTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHHH-cCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCC
Confidence 4567778999997 99987663 222222122355678888888888 777764
No 46
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=40.34 E-value=1.1e+02 Score=22.44 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=35.7
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccc--cccccccChhHHHHHHHHHHc-cccCCC
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFET--DDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT--~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
..+.+...|+.|++ +|.+-..++.. .+.-.......++..|.+++. |.++|+
T Consensus 91 ~~~~~~~~i~~A~~-lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 145 (269)
T 3ngf_A 91 FRDNVDIALHYALA-LDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGI 145 (269)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45778889999997 99987766543 111122245678888888888 777763
No 47
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=39.07 E-value=21 Score=24.25 Aligned_cols=24 Identities=17% Similarity=0.596 Sum_probs=20.3
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=..++|..+|.|+.++|+++..+
T Consensus 14 ~WS~~~V~~WL~w~~~ef~L~~i~ 37 (93)
T 2qar_B 14 YWSRDDVAQWLKWAENEFSLSPID 37 (93)
T ss_dssp GCCHHHHHHHHHHHHHHTTCCCCC
T ss_pred hCCHHHHHHHHHHHHHhcCCCCcc
Confidence 445789999999999889998765
No 48
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.06 E-value=17 Score=24.98 Aligned_cols=24 Identities=13% Similarity=0.531 Sum_probs=20.1
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=.+++|...|.||.++|++++.+
T Consensus 26 ~Ws~~~V~~WL~W~~~ef~L~~v~ 49 (98)
T 1x66_A 26 LWTQEHVRQWLEWAIKEYSLMEID 49 (98)
T ss_dssp GCCTTHHHHHHHHHHHHTTCCSCC
T ss_pred hcCHHHHHHHHHHHHHhcCCCCCC
Confidence 445789999999999989997754
No 49
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=38.86 E-value=31 Score=26.80 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=30.8
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHH
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLL 100 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~ 100 (128)
...+|....++.+++ +|++. +-..+|+++. |++.++.-+.
T Consensus 232 ~~~~n~~~a~~~A~~-lGi~~--~l~peDi~~~-~~k~i~tyva 271 (275)
T 1aoa_A 232 DDLKRAESMLQQADK-LGCRQ--FVTPADVVSG-NPKLNLAFVA 271 (275)
T ss_dssp SHHHHHHHHHHHHTT-TTCCC--SCCHHHHHTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-cCCCC--cCCHHHcCCC-ChhHHHHHHH
Confidence 457899999999997 99976 6788999964 6676655443
No 50
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=38.10 E-value=17 Score=25.04 Aligned_cols=24 Identities=17% Similarity=0.576 Sum_probs=20.5
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=.+++|...|.|+.++|+++..+
T Consensus 29 ~Ws~~~V~~WL~W~~~ef~L~~i~ 52 (97)
T 1sxe_A 29 LWSTDHVRQWLEWAVKEYGLPDVN 52 (97)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSSCC
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCC
Confidence 456899999999999999998763
No 51
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=37.70 E-value=41 Score=23.40 Aligned_cols=46 Identities=9% Similarity=0.200 Sum_probs=34.4
Q ss_pred hhHhhHHHHHHHHHhcCCCCcccccccccccc--ccChhHHHHHHHHHHc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLIM--RKNEKHVILCLLEIIS 104 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~e--~kn~~~Vv~cL~~l~R 104 (128)
-.++|...-++.+++++||+. +...+|+++ .-|.+.|+.-+-.+=.
T Consensus 64 ~~~~n~~~af~~Ae~~lgi~~--lL~peD~~~~~~pD~ksimtYvs~l~~ 111 (121)
T 2d88_A 64 NVEKNNQLAFDIAEKELGISP--IMTGKEMASVGEPDKLSMVMYLTQFYE 111 (121)
T ss_dssp CHHHHHHHHHHHHHHHTCCCC--SSCHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCC--cCCHHHHhccCCCcHHHHHHHHHHHHH
Confidence 367888888888876699975 668999985 3577777776665543
No 52
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=35.89 E-value=19 Score=29.17 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=16.4
Q ss_pred hhhHhhHHHHHHHHHhcCCCCc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFE 77 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e 77 (128)
-+|.|.+..|+.||++ +|+..
T Consensus 248 ~~Q~e~L~~Fy~~ck~-l~l~~ 268 (310)
T 3zym_A 248 LTRMTRISEFLKVAEQ-VGIDR 268 (310)
T ss_dssp HHHHHHHHHHHHHHHH-TC---
T ss_pred HHHHHHHHHHHHHHHH-cCCCC
Confidence 4688999999999998 99743
No 53
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=34.59 E-value=25 Score=23.85 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=20.2
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=..++|...|.|+.++|++++.+
T Consensus 25 ~Ws~~~V~~WL~W~~~ef~L~~v~ 48 (91)
T 1sxd_A 25 HWSTDQVLHWVVWVMKEFSMTDID 48 (91)
T ss_dssp GCCHHHHHHHHHHHHHHTTCCCSC
T ss_pred hCCHHHHHHHHHHHHHccCCCCCC
Confidence 445789999999999989998654
No 54
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=34.16 E-value=13 Score=26.01 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=32.5
Q ss_pred HhhHHHHHHHHHhcCCCCcccccccc-----c-cccccChhHHHHHHHHHH
Q psy610 59 RDNVSNFIGWSRRGLGVFECLLFETD-----D-LIMRKNEKHVILCLLEII 103 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~LFqT~-----D-L~e~kn~~~Vv~cL~~l~ 103 (128)
++++.....-|+++.||++.++-+-. | ..+..+.+-.+.|++.=.
T Consensus 9 ~~~~~~~~~~C~~E~gvs~e~i~~~~~~~~~~~~~~d~~~kC~~~C~~~K~ 59 (137)
T 1dqe_A 9 SLNFGKALDECKKEMTLTDAINEDFYNFWKEGYEIKNRETGCAIMCLSTKL 59 (137)
T ss_dssp HHHHHTTHHHHHHHTTCCTHHHHHHHTTTSTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhccccCCCCCcccCcHHHHHHHHc
Confidence 46677788889999999988764332 3 234566788899988743
No 55
>3r72_A Odorant binding protein Asp5; helical protein, odorant molecules, antennae, transport PROT; HET: NBB; 1.15A {Apis mellifera}
Probab=33.43 E-value=25 Score=23.29 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=32.6
Q ss_pred hHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.++-+..+..-|.++.||++.++ |...|+-+.++.+-.+.|++.-..
T Consensus 8 ~~~~~~~~~~~C~~e~gv~~~~~~~~~~~~~~~d~~~kC~~~C~~~k~g 56 (122)
T 3r72_A 8 VEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDHDLQCYTTCIMKLLR 56 (122)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHGGGTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHcCCCCCCCCcchHHHHHHHHhC
Confidence 45677888899998899988765 333344344556778888887654
No 56
>3cz1_A Pheromone-binding protein Asp1; honey BEE, signal transduction, Q mandibular pheromone; HET: NBB; 1.50A {Apis mellifera} PDB: 2h8v_A* 3bfa_A* 3bfb_A* 3bfh_A* 3cab_A 3cdn_A 3cyz_A* 3cz0_A* 3bjh_A* 3cz2_A 3fe6_A* 3fe8_A* 3fe9_A* 3d78_A* 3d75_A* 3d76_A* 3d77_A* 3d73_A* 3d74_A*
Probab=33.37 E-value=11 Score=24.97 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=35.0
Q ss_pred hHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
+++.+..+..-|.++.||++.++ |...|+-+.++.+-.+.|++.-..
T Consensus 9 ~~~~~~~~~~~C~~e~~v~~e~~~~~~~~~~~~d~~~kC~~~C~~~k~g 57 (119)
T 3cz1_A 9 VFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFS 57 (119)
T ss_dssp EEEHHHHHHHHHHHHHTCCHHHHHHHHHTCCCSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhhhCcCHHHHHHHHcCCCCCCcccCcHHHHHHHHhC
Confidence 56778889999998899998776 333444455677888899988554
No 57
>3q8i_A Odorant binding protein; 2.00A {Anopheles gambiae}
Probab=33.30 E-value=28 Score=23.17 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=32.4
Q ss_pred HhhHHHHHHHHHhcCCCCcccc--cccccccc--ccChhHHHHHHHHHHc
Q psy610 59 RDNVSNFIGWSRRGLGVFECLL--FETDDLIM--RKNEKHVILCLLEIIS 104 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~L--FqT~DL~e--~kn~~~Vv~cL~~l~R 104 (128)
++-+..+-.-|.++.||++.++ |...++-+ .++.+-.+.|++.-..
T Consensus 7 ~~~~~~~~~~C~~e~gv~~~~~~~~~~~~~~~~~d~~~kC~~~C~~~k~g 56 (124)
T 3q8i_A 7 TNSMDMMRQACAPKFKVEEAELHGLRKSIFPANPDKELKCYAMCIAQMAG 56 (124)
T ss_dssp HHHHHHHHHHHGGGSCCCHHHHHHHHTTCCCSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHcCCCCCCCCcccchHHHHHHHHcC
Confidence 4556678889998899988765 22334444 5567888888887665
No 58
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=32.57 E-value=23 Score=24.94 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=20.6
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLL 80 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~L 80 (128)
.=..++|...|.|+.++|++++.++
T Consensus 43 ~WS~~~V~~WL~W~~~ef~L~~v~~ 67 (110)
T 2jv3_A 43 QWTETHVRDWVMWAVNEFSLKGVDF 67 (110)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCCCCT
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCh
Confidence 4457899999999998899987643
No 59
>3r1p_A Odorant binding protein, antennal; all helical protein, odorant molecules binding, mosquito ANT transport protein; HET: PLM; 1.85A {Anopheles gambiae} PDB: 3r1o_A* 3r1v_A*
Probab=31.21 E-value=24 Score=24.04 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=35.6
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccc--cccccccccChhHHHHHHHHHHc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLF--ETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LF--qT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
.+++.+..+..-|.++.||++.++= ...++-+.++.+-.+.|++.=..
T Consensus 9 e~~~~~~~~~~~C~~e~gvs~e~~~~~~~~~~~~d~~~kC~~~C~~~k~g 58 (127)
T 3r1p_A 9 RYKKPAKMLHEICIAESGASEEQLRTCLDGTVPTAPAAKCYIHCLFDKID 58 (127)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHGGGGGTCCCCSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHHHcCCCCCCcccChHHHHHHHHhC
Confidence 4577788999999988999987653 33344455667888899988766
No 60
>3s0a_A OBP14; all helical protein, unknown odorant molecules, antennae, TR protein; 1.15A {Apis mellifera} PDB: 3rzs_A 3s0b_A* 3s0d_A* 3s0e_A* 3s0f_A 3s0g_A
Probab=30.89 E-value=23 Score=23.84 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=34.4
Q ss_pred hhHhhHHHHHHHHHhcCCCCcccc--ccccccc-cccChhHHHHHHHHHHc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLL--FETDDLI-MRKNEKHVILCLLEIIS 104 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~L--FqT~DL~-e~kn~~~Vv~cL~~l~R 104 (128)
.+++-+..+...|.++.||++.++ |...|.- +..+.+-.+.|++.-..
T Consensus 5 e~~~~~~~~~~~C~~e~gvs~e~i~~~~~g~~~~~d~~~kC~~~C~~~k~g 55 (119)
T 3s0a_A 5 ELKTRLHTEQSVCKTETGIDQQKANDVIEGNIDVEDKKVQLYCECILKNFN 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCCCCCChhhhHHHHHHHHHhC
Confidence 356778888999988899998765 4444443 34567788888887655
No 61
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=30.54 E-value=50 Score=26.02 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=33.0
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
|--.-.+.+..++.||.+ +||+..-+ |.|+.. |.++.=+..||.|.+
T Consensus 31 GH~~G~~~~~~i~~~c~~-lGI~~lTlYaFStENw---~Rp~~EV~~Lm~L~~ 79 (225)
T 3ugs_B 31 GYSQGVKTMQKLMEVCME-ENISNLSLFAFSTENW---KRPKDEIDFIFELLD 79 (225)
T ss_dssp --CHHHHHHHHHHHHHHH-TTCCEEEEEEEESGGG---GSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEEEccccc---CCCHHHHHHHHHHHH
Confidence 445667899999999998 99998765 778775 333455556666654
No 62
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=30.43 E-value=40 Score=27.04 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=32.5
Q ss_pred hhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
-.-.+.+..++.||.+ +||+..-+ |.|+.. |.++.=+..||.|.+
T Consensus 51 ~~G~~~~~~iv~~c~~-lGI~~lTlYaFStENw---kRp~~EV~~Lm~L~~ 97 (256)
T 4h8e_A 51 YEGMQTIKKITRIASD-IGVKYLTLYAFSTENW---SRPESEVNYIMNLPV 97 (256)
T ss_dssp HHHHHHHHHHHHHHHH-HTCSEEEEEEEETTGG---GSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCCEEEEEEEchhhh---CCCHHHHHHHHHHHH
Confidence 4556889999999998 99998775 778773 334455566666554
No 63
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.96 E-value=29 Score=25.20 Aligned_cols=49 Identities=16% Similarity=0.514 Sum_probs=32.8
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc--ccc-----------ccccccccC--hhHHHHHHHHHHc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL--LFE-----------TDDLIMRKN--EKHVILCLLEIIS 104 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~--LFq-----------T~DL~e~kn--~~~Vv~cL~~l~R 104 (128)
.=..++|...|.||.++|+++..+ .|+ -+|...... ...|+..-+++-|
T Consensus 40 ~WS~~~V~~WL~Wa~~ef~L~~id~~~Fq~mnGk~LC~LskeDF~~~~p~~~GDiL~~hL~~Lr 103 (128)
T 2ytu_A 40 LWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLR 103 (128)
T ss_dssp GCCTTHHHHHHHHHHHHTCCCSCCCGGGSSCCTTHHHHCCHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCChHhCCCCCHHHHHcCCHHHHHHHcCCCchHHHHHHHHHHH
Confidence 456789999999999999998754 463 133333332 2566666666666
No 64
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=29.63 E-value=51 Score=23.23 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=33.2
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccccc--cChhHHHHHHHHHH
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLIMR--KNEKHVILCLLEII 103 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~e~--kn~~~Vv~cL~~l~ 103 (128)
..++|...-++.+++.+||+. +...+|++.. -|.+.|+.-+-.+=
T Consensus 62 ~~~~n~~~af~~Ae~~lgip~--lL~peD~v~~~~pD~ksvmtYvs~l~ 108 (128)
T 2d87_A 62 NRRQNFEVAFSSAETHADCPQ--LLDTEDMVRLREPDWKCVYTYIQEFY 108 (128)
T ss_dssp CHHHHHHHHHHHHHHHHCCCC--CSCHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCc--ccCHHHHhccCCccHHHHHHHHHHHH
Confidence 467889998999987789975 5788998754 35677766655553
No 65
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=28.33 E-value=69 Score=22.52 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=34.7
Q ss_pred CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHH
Q psy610 54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102 (128)
Q Consensus 54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l 102 (128)
..|+..||++.-|++.++ .|+.-+ --..+|++++.- +.++--|..|
T Consensus 78 ~r~~kieNv~~aL~~lk~-~gi~l~-~I~~~DIvdGn~-kliLgLiW~l 123 (131)
T 2vzc_A 78 SFEQKVLNVSFAFELMQD-GGLEKP-KPRPEDIVNCDL-KSTLRVLYNL 123 (131)
T ss_dssp SHHHHHHHHHHHHHHHHH-TTCCCC-SSCHHHHHTTCH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-cCCCcC-CCCHHHhhCCCH-HhHHHHHHHH
Confidence 469999999999999997 899754 468899999874 4444444434
No 66
>3ogn_A Odorant-binding protein; helix bundle, transport protein; HET: 3OG; 1.30A {Culex quinquefasciatus} PDB: 2l2c_A 2erb_A* 3n7h_A* 4fqt_A* 3k1e_A*
Probab=28.18 E-value=44 Score=22.45 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=37.0
Q ss_pred ChhhHhhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 55 TFFARDNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 55 ~FkardNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
+=..++-+..+..-|.++.||++.++ |...++-+.++.+-.+.|++.-..
T Consensus 11 ~~e~~~~~~~~~~~C~~e~gvs~e~~~~~~~~~~~~d~~~kC~~~C~~~k~g 62 (124)
T 3ogn_A 11 PPELLEALKPLHDICAKKTGVTDEAIIEFSDGKIHEDEKLKCYMNCLFHEAK 62 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHSCCCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhhhhCcCHHHHHHHHcCCCCCCcccCHHHHHHHHHhC
Confidence 34567788899999999899988765 233344455667889999988655
No 67
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=27.88 E-value=47 Score=26.97 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=22.9
Q ss_pred hHhhHHHHHHHHHhcCCCCcccccc--cccc
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFE--TDDL 86 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFq--T~DL 86 (128)
-.+.+..++.||.+ +||+..-+|. |+..
T Consensus 84 G~~~l~~iv~~c~~-lGI~~LTlYaFStENw 113 (284)
T 2vg3_A 84 GEAVVIDIACGAIE-LGIKWLSLYAFSTENW 113 (284)
T ss_dssp HHHHHHHHHHHHHH-HTCCEEEEEEEETTGG
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEEeccCccc
Confidence 34899999999997 9999988865 5543
No 68
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.71 E-value=23 Score=24.23 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=19.8
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccc
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECL 79 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~ 79 (128)
.=.+++|...|.|+.++|+++..+
T Consensus 26 ~Ws~~~V~~WL~W~~~ef~L~~i~ 49 (96)
T 2dkx_A 26 DWSPSNVQKWLLWTEHQYRLPPMG 49 (96)
T ss_dssp GCCSSTHHHHHHHHHHHTTCCCCH
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCC
Confidence 344679999999999989998754
No 69
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=27.58 E-value=48 Score=24.43 Aligned_cols=50 Identities=4% Similarity=0.076 Sum_probs=36.9
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccc---cccccccChhHHHHHHHHHHc-cccCCC
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFET---DDLIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT---~DL~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
..+.+...|+.|++ +|.+-..++.. .+ .......++..|.++++ |.++|+
T Consensus 100 ~~~~~~~~i~~a~~-lG~~~v~~~~G~~~~~--~~~~~~~~~~~l~~l~~~a~~~Gv 153 (290)
T 3tva_A 100 RVAEMKEISDFASW-VGCPAIGLHIGFVPES--SSPDYSELVRVTQDLLTHAANHGQ 153 (290)
T ss_dssp HHHHHHHHHHHHHH-HTCSEEEECCCCCCCT--TSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEcCCCCccc--chHHHHHHHHHHHHHHHHHHHcCC
Confidence 46788899999997 99988776532 22 23345678888999988 887775
No 70
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=27.26 E-value=64 Score=23.28 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=37.1
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccccccChhHH-HHHHHHHHc-cccCCC
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHV-ILCLLEIIS-GEKFEI 110 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~V-v~cL~~l~R-a~~~g~ 110 (128)
..++.+...|+.|++ +|.+-..++...+- ......+ +..|.+++. |.++|+
T Consensus 82 ~~~~~~~~~i~~a~~-lG~~~v~~~~g~~~--~~~~~~~~~~~l~~l~~~a~~~gv 134 (272)
T 2q02_A 82 EVVKKTEGLLRDAQG-VGARALVLCPLNDG--TIVPPEVTVEAIKRLSDLFARYDI 134 (272)
T ss_dssp HHHHHHHHHHHHHHH-HTCSEEEECCCCSS--BCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHH-hCCCEEEEccCCCc--hhHHHHHHHHHHHHHHHHHHHcCC
Confidence 357888999999997 99987766544331 1445677 888888888 777663
No 71
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=25.98 E-value=30 Score=25.17 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=15.5
Q ss_pred HhhHHHHHHHHHhcCCCCccccccc
Q psy610 59 RDNVSNFIGWSRRGLGVFECLLFET 83 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~LFqT 83 (128)
..|=+.|-.||| ||..+++-.+-
T Consensus 110 ~nNCEHFvt~cr--yG~~~S~~~~~ 132 (137)
T 4dpz_X 110 SDNCEHFVNHLR--YGVSRSDQLEH 132 (137)
T ss_dssp -CHHHHHHHHHH--HSCCCC-----
T ss_pred ccChHHHHHHHh--cCCchhcchhh
Confidence 578999999998 79998876553
No 72
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=24.76 E-value=58 Score=24.88 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=30.5
Q ss_pred hhHhhHHHHHHHHHhcCCCCccccccccccccc-cChhHHHHHH
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDLIMR-KNEKHVILCL 99 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL~e~-kn~~~Vv~cL 99 (128)
...+|...-++.+++.+||+ .+...+|++++ -+.+.|+.-+
T Consensus 196 ~~~~n~~~a~~~A~~~lGi~--~~l~peDi~~~~~d~ksi~tyv 237 (245)
T 2wa7_A 196 KPVDNAREAVQQADDWLGVP--QVITPEEIIHPDVDEHSVMTYL 237 (245)
T ss_dssp CHHHHHHHHHHHHHHHSCCC--CSSCHHHHTCTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCC--ccCCHHHhccCCCcHHHHHHHH
Confidence 35778888888888779998 46788999885 4556665544
No 73
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=24.53 E-value=73 Score=25.84 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=31.4
Q ss_pred hHhhHHHHHHHHHhcCCCCcccccccccccccc-ChhHHHHHHHHH
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMRK-NEKHVILCLLEI 102 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~k-n~~~Vv~cL~~l 102 (128)
.++|...-++.+++.+||+. +...+|++..+ +.+.|++-+-.+
T Consensus 194 ~~~n~~~Af~~Ae~~lGip~--ll~peDi~~~~pDeksimtYvs~~ 237 (347)
T 4b7l_A 194 PVDNAREAMQQADDWLGVPQ--VITPEEIIHPDVDEHSVMTYLSQF 237 (347)
T ss_dssp HHHHHHHHHHHHHHHHCCCC--SSCHHHHTCTTCCHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHhcCCCc--ccCHHHcCCCCCChhHHHHHHHHH
Confidence 56788887888887699985 77899998755 666666554444
No 74
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=23.80 E-value=1.1e+02 Score=21.34 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=31.4
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccccccc-cChhHHHHHHHHHHc
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDDLIMR-KNEKHVILCLLEIIS 104 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~DL~e~-kn~~~Vv~cL~~l~R 104 (128)
..+|...=++.+++.+||+. +...+|+... -+.+.|+.-+..+=.
T Consensus 63 ~~~n~~~af~~Ae~~Lgi~~--ll~~eDv~~~~pDeksimtYvs~l~~ 108 (127)
T 1wyq_A 63 AHYNLQNAFNLAEKELGLTK--LLDPEDVNVDQPDEKSIITYVATYYH 108 (127)
T ss_dssp CHHHHHHHHHHHHHTTCCCC--CSCTTTSCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCc--ccCHHHhccCCCcHHHHHHHHHHHHH
Confidence 56788888888875599975 4678898654 356777666655543
No 75
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=23.07 E-value=50 Score=24.62 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=38.1
Q ss_pred hhHhhH-HHHHHHHHhcCCCCcccccc-ccccccccChhHHHHHHHHHHc-cccCCCCCCCCcc
Q psy610 57 FARDNV-SNFIGWSRRGLGVFECLLFE-TDDLIMRKNEKHVILCLLEIIS-GEKFEISKTPPKK 117 (128)
Q Consensus 57 kardNI-snFL~~crk~~GV~e~~LFq-T~DL~e~kn~~~Vv~cL~~l~R-a~~~g~~~~gpk~ 117 (128)
..++.. ...+.++.. . .+...+++ -.+....||++.+..|+..|.| -..||.....||.
T Consensus 118 ~~~~~a~~~l~~~~~~-~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~ 179 (278)
T 4ffb_C 118 TTKTQSMSCILSLCGL-D-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQT 179 (278)
T ss_dssp HHHHHHHHHHHHHHHT-S-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHh-c-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchh
Confidence 344553 334455544 2 22222332 2334578999999999999999 8889988877765
No 76
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=22.46 E-value=64 Score=25.50 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=21.7
Q ss_pred hhHhhHHHHHHHHHhcCCCCcccccc--cccc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFE--TDDL 86 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFq--T~DL 86 (128)
.-.+.+..++.||.+ +||+..-+|. |+-.
T Consensus 43 ~G~~~l~~iv~~c~~-~GI~~lTlYaFSteNw 73 (245)
T 2d2r_A 43 KGVKTLKDITIWCAN-HKLECLTLYAFSTENW 73 (245)
T ss_dssp HHHHHHHHHHHHHHT-TTCSEEEEECC-----
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEEeccCccc
Confidence 346899999999997 9999988865 5443
No 77
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=21.71 E-value=62 Score=23.69 Aligned_cols=53 Identities=4% Similarity=-0.021 Sum_probs=37.5
Q ss_pred hhHhhHHHHHHHHHhcCCCCcccccccccc---ccccChhHHHHHHHHHHc-cccCCC
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETDDL---IMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~DL---~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
...+.+...|+.|++ +|++-..++...+- ........++..|.++++ |.++|+
T Consensus 81 ~~~~~~~~~i~~A~~-lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 137 (286)
T 3dx5_A 81 KTIEKCEQLAILANW-FKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNM 137 (286)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH-hCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 346788889999997 99988876644321 122345778888888888 777764
No 78
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=21.69 E-value=49 Score=26.27 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=27.5
Q ss_pred hhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHH
Q psy610 56 FFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102 (128)
Q Consensus 56 FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l 102 (128)
-.|.|.+..|..||+. +|+.. -+--+| .+.+.+.+..|-+-
T Consensus 255 ~~q~~~L~~Fy~~c~~-~~~~~---~~iP~L--~~~p~~ll~~Lee~ 295 (299)
T 1hx8_A 255 LVRMDRVGEFLKVAEN-VGIDK---GDIPDL--TKAPSSLLDALEQH 295 (299)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCG---GGSCCC--CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-CCcCC---CCCCCC--CCCCHHHHHHHHHH
Confidence 3688999999999998 99843 133333 35556666665543
No 79
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=21.68 E-value=52 Score=21.39 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCCCcccc--ccccccccccChhHHHHHHHHHHc
Q psy610 60 DNVSNFIGWSRRGLGVFECLL--FETDDLIMRKNEKHVILCLLEIIS 104 (128)
Q Consensus 60 dNIsnFL~~crk~~GV~e~~L--FqT~DL~e~kn~~~Vv~cL~~l~R 104 (128)
+-+..+-+.|.++.||++.++ +...+.-+..+.+-.+.|++.-..
T Consensus 8 ~~~~~~~~~C~~e~gv~~e~i~~~~~~~~p~d~~~kC~~~C~~~k~g 54 (120)
T 3v2l_A 8 KSGEMIRSVCLGKTKVAEELVNGLRESKFADVKELKCYVNCVMEMMQ 54 (120)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHTTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhCcCHHHHHHHHcCCCCCCcccchHHHHHHHHhC
Confidence 334455666776677776654 333333344455666666665443
No 80
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=21.51 E-value=69 Score=23.04 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=36.0
Q ss_pred hHhhHHHHHHHHHhcCCCCccccccccc---cccccChhHHHHHHHHHHc-cccCCC
Q psy610 58 ARDNVSNFIGWSRRGLGVFECLLFETDD---LIMRKNEKHVILCLLEIIS-GEKFEI 110 (128)
Q Consensus 58 ardNIsnFL~~crk~~GV~e~~LFqT~D---L~e~kn~~~Vv~cL~~l~R-a~~~g~ 110 (128)
..+.+...|+.|+. +|++-..++...+ .-.......++..|-+++. |.++|+
T Consensus 82 ~~~~~~~~i~~a~~-lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 137 (278)
T 1i60_A 82 IITEFKGMMETCKT-LGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGV 137 (278)
T ss_dssp HHHHHHHHHHHHHH-HTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45778888899987 9998776653332 1113345778888888888 777763
No 81
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=21.33 E-value=93 Score=22.29 Aligned_cols=52 Identities=6% Similarity=-0.098 Sum_probs=34.6
Q ss_pred hhHhhHHHHHHHHHhcCCCCcccccccc---ccccccChhHHHHHHHHHHc-cccCC
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFETD---DLIMRKNEKHVILCLLEIIS-GEKFE 109 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFqT~---DL~e~kn~~~Vv~cL~~l~R-a~~~g 109 (128)
...+.+..-|+.|++ +|.+-..++... +.-.....+.++..|.+++. |.++|
T Consensus 82 ~~~~~~~~~i~~a~~-lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g 137 (260)
T 1k77_A 82 EAHADIDLALEYALA-LNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHG 137 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456778888999997 999876554322 11122334677888888887 76665
No 82
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=20.83 E-value=57 Score=22.79 Aligned_cols=24 Identities=0% Similarity=-0.108 Sum_probs=19.9
Q ss_pred HhhHHHHHHHHHhcCCCCccccccc
Q psy610 59 RDNVSNFIGWSRRGLGVFECLLFET 83 (128)
Q Consensus 59 rdNIsnFL~~crk~~GV~e~~LFqT 83 (128)
-|-.+.|.++|+. +|+++...+-.
T Consensus 126 ~e~~e~F~~~~~~-~Gl~~enI~~~ 149 (157)
T 3fiq_A 126 KAQKQELRKLAEE-YNIPNENTQHL 149 (157)
T ss_dssp HHHHHHHHHHHHH-TTCCGGGCEEC
T ss_pred HHHHHHHHHHHHH-cCCCHHHEEeC
Confidence 4668899999997 99999977643
No 83
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=20.63 E-value=42 Score=26.69 Aligned_cols=28 Identities=11% Similarity=0.282 Sum_probs=21.9
Q ss_pred hhHhhHHHHHHHHHhcCCCCcccccc--ccc
Q psy610 57 FARDNVSNFIGWSRRGLGVFECLLFE--TDD 85 (128)
Q Consensus 57 kardNIsnFL~~crk~~GV~e~~LFq--T~D 85 (128)
.-.+.+..++.||.+ +||+..-+|. |+.
T Consensus 45 ~G~~~l~~iv~~c~~-~GI~~lTlYaFStEN 74 (253)
T 3qas_B 45 AGAKSVRRAVSFAAN-NGIEALTLYAFSSEN 74 (253)
T ss_dssp HHHHHHHHHHHHHHH-TTCSEEEEECCCC--
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEEecCcc
Confidence 346899999999997 9999988864 554
No 84
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.24 E-value=57 Score=19.23 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCCCCccccccccc
Q psy610 61 NVSNFIGWSRRGLGVFECLLFETDD 85 (128)
Q Consensus 61 NIsnFL~~crk~~GV~e~~LFqT~D 85 (128)
.+......|+. +||+-.+||...|
T Consensus 49 ~~~~l~~ia~~-l~v~~~~l~~~~~ 72 (73)
T 3omt_A 49 SLETLFDIAEA-LNVDVRELIVSTK 72 (73)
T ss_dssp CHHHHHHHHHH-HTSCGGGGBCCCC
T ss_pred CHHHHHHHHHH-HCcCHHHHhcCCC
Confidence 46677888887 9999999987654
Done!