RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy610
         (128 letters)



>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 144

 Score = 53.8 bits (129), Expect = 8e-11
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 33  HSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNE 92
              ++      PVK         F   + V+ F+  +    GV +  +F+T DL   K+ 
Sbjct: 49  LVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAED-YGVIKTDMFQTVDLYEGKDM 107

Query: 93  KHVILCLLEI 102
             V   L+ +
Sbjct: 108 AAVQRTLMAL 117


>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 108

 Score = 46.0 bits (109), Expect = 4e-08
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 37  ISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVI 96
           I+ L    V+ +       +   +N+ NF+   +   GV    +FE +DL    N   V 
Sbjct: 38  INKLQPGSVQKVN-DPVQNWHKLENIGNFLRAIKH-YGVKPHDIFEANDLFENTNHTQVQ 95

Query: 97  LCLLEI 102
             L+ +
Sbjct: 96  STLIAL 101


>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 159

 Score = 39.2 bits (91), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 14  VRRYAEEHMAKRQAQGKDVHSI---------AISVLNLPPVKHLPGAKPGTFFARDNVSN 64
            +++ EE +                       +       +  +  +    F   DN++ 
Sbjct: 16  AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINK 75

Query: 65  FIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104
           F+ +     G+ E   FE  D+   KN   VI C+  +  
Sbjct: 76  FLDFIHGI-GLPEIFHFELTDIYEGKNLPKVIYCIHALSY 114


>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 500

 Score = 26.1 bits (57), Expect = 1.5
 Identities = 6/81 (7%), Positives = 20/81 (24%), Gaps = 6/81 (7%)

Query: 46  KHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLL------FETDDLIMRKNEKHVILCL 99
               G      +A   +      + R    +   +         +++        ++L +
Sbjct: 245 HERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEV 304

Query: 100 LEIISGEKFEISKTPPKKLNT 120
           L+ +S             +  
Sbjct: 305 LDKVSPSSVNWKHASKPPIKM 325



 Score = 24.2 bits (52), Expect = 5.6
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 95  VILC-LLEIISGEKF-EISKTPPKKLNTYTIL 124
           V+LC L+ +       E +    + LN +   
Sbjct: 41  VLLCKLINVAVPGTIDERAINTKRVLNPWERN 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 475,037
Number of extensions: 19971
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 7
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)