Query psy6101
Match_columns 341
No_of_seqs 249 out of 918
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 17:38:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3326|consensus 100.0 1E-29 2.2E-34 222.3 10.5 112 226-337 41-153 (154)
2 COG2938 Uncharacterized conser 99.9 7.1E-27 1.5E-31 192.0 9.9 89 234-325 4-92 (94)
3 KOG3326|consensus 99.9 9.7E-27 2.1E-31 203.7 7.6 97 30-127 53-153 (154)
4 PF03937 Sdh5: Flavinator of s 99.9 8.4E-25 1.8E-29 171.4 6.0 74 244-319 1-74 (74)
5 COG2938 Uncharacterized conser 99.9 4.1E-23 9E-28 169.8 8.6 85 28-115 6-92 (94)
6 PF03937 Sdh5: Flavinator of s 99.8 7.2E-20 1.6E-24 143.6 4.8 70 36-109 1-74 (74)
7 PRK10878 hypothetical protein; 99.7 5.7E-18 1.2E-22 133.4 7.9 68 257-326 1-68 (72)
8 PRK10878 hypothetical protein; 99.6 3.8E-15 8.2E-20 117.4 7.2 65 47-114 1-66 (72)
9 PRK10692 hypothetical protein; 50.5 5.4 0.00012 33.4 0.1 11 155-165 71-81 (92)
10 PF10762 DUF2583: Protein of u 50.3 5 0.00011 33.5 -0.1 10 155-164 71-80 (89)
11 KOG1612|consensus 42.0 11 0.00023 37.3 0.7 33 143-178 117-149 (288)
12 TIGR02949 anti_SigH_actin anti 31.8 1.2E+02 0.0027 24.2 5.2 62 46-111 8-80 (84)
13 PF08880 QLQ: QLQ; InterPro: 28.3 92 0.002 21.9 3.4 34 64-104 2-35 (37)
14 COG3095 MukE Uncharacterized p 24.1 1.8E+02 0.004 27.7 5.5 63 257-322 86-157 (238)
15 PHA03398 viral phosphatase sup 22.6 77 0.0017 31.8 3.0 58 115-176 142-200 (303)
16 TIGR02906 spore_CotS spore coa 22.3 1.7E+02 0.0037 27.1 5.1 62 263-327 241-305 (313)
17 COG3141 DNA damage-inducible g 20.6 2.3E+02 0.0051 24.1 4.9 50 255-307 29-78 (97)
No 1
>KOG3326|consensus
Probab=99.96 E-value=1e-29 Score=222.35 Aligned_cols=112 Identities=61% Similarity=0.970 Sum_probs=108.2
Q ss_pred CCCCCCCCcccCCCChHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCC
Q psy6101 226 QEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRP 305 (341)
Q Consensus 226 ~~~~i~~~~~r~~E~~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~p 305 (341)
..++.|++.+|++|++|++|+||+||||+|||+|+|||||.|+++|+..|+++|+.+|++||+.+++|||||+|+++.++
T Consensus 41 ~~~~~~~~~~r~~e~~etkraRLlYqSrKRGiLEnDLLLs~Fa~~~l~~m~e~~l~~YD~LiN~~~~dWDi~YWaTe~kp 120 (154)
T KOG3326|consen 41 ENLPSPEYPKRPNEPLETKRARLLYQSRKRGILENDLLLSNFAAKNLKKMSEEQLKEYDQLINEESNDWDIYYWATETKP 120 (154)
T ss_pred ccccCCcccCCCCchhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCcCCchhhhhhccCCC
Confidence 47888999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCchhhH-HHHHHHHhhhhcccccccccCCCCC
Q psy6101 306 IPLQFNN-EVMKLLQDHTKNKDRQARLRQPDLY 337 (341)
Q Consensus 306 pP~e~~~-~Ii~~Ir~~~~n~~k~~r~~~P~l~ 337 (341)
+|+.+.+ +|++.+++|++|+.|+.+++||||.
T Consensus 121 ~Pe~~~s~~V~~~L~e~v~n~~r~~~lr~pdl~ 153 (154)
T KOG3326|consen 121 PPEKVESSEVFKLLKEFVKNKERVHRLRMPDLA 153 (154)
T ss_pred CchhhhhHHHHHHHHHHHHhhhhcccccCcccc
Confidence 9999996 9999999999999888899999994
No 2
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=7.1e-27 Score=191.99 Aligned_cols=89 Identities=30% Similarity=0.521 Sum_probs=85.4
Q ss_pred cccCCCChHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHH
Q psy6101 234 QERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNE 313 (341)
Q Consensus 234 ~~r~~E~~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~ 313 (341)
++|+.+..+.+++||+|||| |||+|||+|||+|+++|+++||++|+++|++||++ +|+|||+|++|+.+||+...++
T Consensus 4 ~~~~~~~~d~~~~RL~~rsr-RGmrElDlil~~Fae~~~~~lsd~el~~f~~LLe~--~D~dL~~Wi~g~~~~~~~~~~~ 80 (94)
T COG2938 4 STRSTEDDDARKARLRWRSR-RGMRELDLILGPFAEKEFDSLSDEELDEFERLLEC--EDNDLFNWIMGHGEPPDAELTP 80 (94)
T ss_pred cccccccCHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CcHHHHHHHhCCCCCCcHHHHH
Confidence 47899999999999999998 99999999999999999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHhhhhcc
Q psy6101 314 VMKLLQDHTKNK 325 (341)
Q Consensus 314 Ii~~Ir~~~~n~ 325 (341)
++++|+++.+..
T Consensus 81 mv~~I~~~~~~~ 92 (94)
T COG2938 81 MVRKIQARRRIR 92 (94)
T ss_pred HHHHHHHHhhhc
Confidence 999999998764
No 3
>KOG3326|consensus
Probab=99.93 E-value=9.7e-27 Score=203.70 Aligned_cols=97 Identities=46% Similarity=0.696 Sum_probs=92.4
Q ss_pred CCCchhhhhhhhhhc--cchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchH-HHH
Q psy6101 30 KPDLSKVQSQPLDRS--RGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNN-EVM 105 (341)
Q Consensus 30 ~~~ld~rRrRLl~R~--RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t-~Im 105 (341)
...++.+|.||+|++ |||.|. ++||.||++++ .+|+++||.+|++||+.+.||||||||+|+++|+|+.|.+ +||
T Consensus 53 ~e~~etkraRLlYqSrKRGiLEnDLLLs~Fa~~~l-~~m~e~~l~~YD~LiN~~~~dWDi~YWaTe~kp~Pe~~~s~~V~ 131 (154)
T KOG3326|consen 53 NEPLETKRARLLYQSRKRGILENDLLLSNFAAKNL-KKMSEEQLKEYDQLINEESNDWDIYYWATETKPPPEKVESSEVF 131 (154)
T ss_pred CchhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-HhCCHHHHHHHHHHhcCCcCCchhhhhhccCCCCchhhhhHHHH
Confidence 577899999999985 999999 77899999998 9999999999999999999999999999999999999997 999
Q ss_pred HHHHHhhhcccccccccCCchh
Q psy6101 106 KLLQDHTKNKDRQARLRQPDLY 127 (341)
Q Consensus 106 ~~Ir~f~kn~~k~~r~~~P~L~ 127 (341)
+.++.|++|++|++++|||+|+
T Consensus 132 ~~L~e~v~n~~r~~~lr~pdl~ 153 (154)
T KOG3326|consen 132 KLLKEFVKNKERVHRLRMPDLA 153 (154)
T ss_pred HHHHHHHHhhhhcccccCcccc
Confidence 9999999999999999999985
No 4
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=99.91 E-value=8.4e-25 Score=171.45 Aligned_cols=74 Identities=32% Similarity=0.590 Sum_probs=65.4
Q ss_pred HHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHH
Q psy6101 244 RKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQ 319 (341)
Q Consensus 244 rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir 319 (341)
+++||+|||+||||+|+|+|||+|+++++++||++|+++|+.||++ +|+|||+|++|+.+||+.....|+++||
T Consensus 1 r~kRl~~r~~rRG~~ElDllL~~f~~~~~~~l~~~el~~fe~lL~~--~D~dL~~wl~g~~~p~~~~~~~li~~ir 74 (74)
T PF03937_consen 1 RRKRLRWRCKRRGMLELDLLLGRFADAHLDSLSEEELDAFERLLDL--EDPDLYDWLMGREEPEDPELAALIEKIR 74 (74)
T ss_dssp HHHHHHHHHSS-SSHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHTS---HHHHHHHHCTSSEESCHHHHHHHHHHH
T ss_pred CcHHHHHHhhcccHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCChhHHHHHHHhC
Confidence 5899999998899999999999999999999999999999999999 5999999999996666555579999886
No 5
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=4.1e-23 Score=169.79 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=75.9
Q ss_pred cCCCCchhhhhhhhhhc-cchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHH
Q psy6101 28 LMKPDLSKVQSQPLDRS-RGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVM 105 (341)
Q Consensus 28 ~~~~~ld~rRrRLl~R~-RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im 105 (341)
-++.+.+.+|+||.||+ |||+|| +|||+||++|+ ++||++|+++|++||++ +|+|||+||+|+.++|+.+.++|+
T Consensus 6 ~~~~~~d~~~~RL~~rsrRGmrElDlil~~Fae~~~-~~lsd~el~~f~~LLe~--~D~dL~~Wi~g~~~~~~~~~~~mv 82 (94)
T COG2938 6 RSTEDDDARKARLRWRSRRGMRELDLILGPFAEKEF-DSLSDEELDEFERLLEC--EDNDLFNWIMGHGEPPDAELTPMV 82 (94)
T ss_pred cccccCHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHcC--CcHHHHHHHhCCCCCCcHHHHHHH
Confidence 34566777777777764 999999 78999999997 99999999999999995 599999999999999999999999
Q ss_pred HHHHHhhhcc
Q psy6101 106 KLLQDHTKNK 115 (341)
Q Consensus 106 ~~Ir~f~kn~ 115 (341)
++|+++.++.
T Consensus 83 ~~I~~~~~~~ 92 (94)
T COG2938 83 RKIQARRRIR 92 (94)
T ss_pred HHHHHHhhhc
Confidence 9999998764
No 6
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=99.79 E-value=7.2e-20 Score=143.59 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=57.6
Q ss_pred hhhhhhhh--ccchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchH-HHHHHHH
Q psy6101 36 VQSQPLDR--SRGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNN-EVMKLLQ 109 (341)
Q Consensus 36 rRrRLl~R--~RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t-~Im~~Ir 109 (341)
||+|++|| ||||+|+ +|||+|+++++ ++||++|+++|+.||+.+ |+|||+|++|+ ++|+++.. +|+++||
T Consensus 1 r~kRl~~r~~rRG~~ElDllL~~f~~~~~-~~l~~~el~~fe~lL~~~--D~dL~~wl~g~-~~p~~~~~~~li~~ir 74 (74)
T PF03937_consen 1 RRKRLRWRCKRRGMLELDLLLGRFADAHL-DSLSEEELDAFERLLDLE--DPDLYDWLMGR-EEPEDPELAALIEKIR 74 (74)
T ss_dssp HHHHHHHHHSS-SSHHHHHHHHHHHHHHH-HHS-HHHHHHHHHHHTS---HHHHHHHHCTS-SEESCHHHHHHHHHHH
T ss_pred CcHHHHHHhhcccHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHcCC--CHHHHHHHhCC-CCCCChhHHHHHHHhC
Confidence 34555554 6999999 77999999887 999999999999999965 99999999999 66777764 9999886
No 7
>PRK10878 hypothetical protein; Provisional
Probab=99.74 E-value=5.7e-18 Score=133.38 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=64.4
Q ss_pred hHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHHhhhhccc
Q psy6101 257 MLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKD 326 (341)
Q Consensus 257 mlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir~~~~n~~ 326 (341)
|+|||+|||+|++++|++||++|++.|++||++ +|+|||+|+||+.+||+.....|+++|+++...++
T Consensus 1 m~ElDlll~~F~~~~~~~l~~~e~~~Fe~LL~~--~D~dL~~W~~g~~~p~d~~l~~iV~~Ir~~~~~~~ 68 (72)
T PRK10878 1 MRELDISIMPFFEHEYDSLSDDEKRIFIRLLEC--DDPDLFNWLMNHGKPADAELERMVRLIQTRNRERG 68 (72)
T ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 799999999999999999999999999999999 59999999999999999999999999999876644
No 8
>PRK10878 hypothetical protein; Provisional
Probab=99.58 E-value=3.8e-15 Score=117.45 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=60.3
Q ss_pred hhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHHHHHHHhhhc
Q psy6101 47 GGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKN 114 (341)
Q Consensus 47 ~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im~~Ir~f~kn 114 (341)
|+|| +|||+|+++++ ++||++|++.|++||+++ |+|||+|++|+.++|+.....|+++|+++++.
T Consensus 1 m~ElDlll~~F~~~~~-~~l~~~e~~~Fe~LL~~~--D~dL~~W~~g~~~p~d~~l~~iV~~Ir~~~~~ 66 (72)
T PRK10878 1 MRELDISIMPFFEHEY-DSLSDDEKRIFIRLLECD--DPDLFNWLMNHGKPADAELERMVRLIQTRNRE 66 (72)
T ss_pred CchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHcCC--CHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Confidence 6899 77999999886 999999999999999966 99999999999999999999999999997665
No 9
>PRK10692 hypothetical protein; Provisional
Probab=50.52 E-value=5.4 Score=33.44 Aligned_cols=11 Identities=45% Similarity=1.232 Sum_probs=9.5
Q ss_pred cchhhhccccc
Q psy6101 155 RRYCWLSHFDL 165 (341)
Q Consensus 155 ~~~~~~~~~~~ 165 (341)
-||||+.|||-
T Consensus 71 DRYwwvkh~d~ 81 (92)
T PRK10692 71 DRYWWVRHYDK 81 (92)
T ss_pred hhHHHHhhccH
Confidence 47999999984
No 10
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=50.29 E-value=5 Score=33.47 Aligned_cols=10 Identities=60% Similarity=1.497 Sum_probs=9.0
Q ss_pred cchhhhcccc
Q psy6101 155 RRYCWLSHFD 164 (341)
Q Consensus 155 ~~~~~~~~~~ 164 (341)
-||||+.|||
T Consensus 71 DRYwWvkh~D 80 (89)
T PF10762_consen 71 DRYWWVKHFD 80 (89)
T ss_pred hhHHHHHhhh
Confidence 4799999999
No 11
>KOG1612|consensus
Probab=41.98 E-value=11 Score=37.31 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=27.5
Q ss_pred ccccchhhhhhccchhhhccccccceeeeecCCCcc
Q psy6101 143 SFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLS 178 (341)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (341)
+-|+-...|.+-.+|||.-|.| +.+|+||+|+.
T Consensus 117 ~sgv~ls~L~lt~~~~W~i~VD---vlVi~s~gn~~ 149 (288)
T KOG1612|consen 117 GSGVDLSKLQLTPGYCWKIYVD---VLVISSDGNLL 149 (288)
T ss_pred CcccchhheeccCCeeEEEEEe---EEEEecCCCHH
Confidence 3467778888888899999998 68999999864
No 12
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=31.84 E-value=1.2e+02 Score=24.21 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=42.7
Q ss_pred chhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCC-C---------CCCHHHHHHHhCCCCCCccchHHHHHHHHHh
Q psy6101 46 GGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINL-P---------SNDWDIYYWATGVRPIPLQFNNEVMKLLQDH 111 (341)
Q Consensus 46 G~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~-p---------eND~DLY~WitG~~p~P~e~~t~Im~~Ir~f 111 (341)
++.|. ..|..|++.. |++++-..|+.=|+. | .--.++..+.....++|+.+...|+..|+.-
T Consensus 8 ~C~e~~~~l~~ylDge----L~~~e~~~~e~HL~~C~~C~~e~~~~~~~~~~L~~~~~~~~aP~~Lr~rI~~~l~~~ 80 (84)
T TIGR02949 8 DCDEVIDHLYEFLDGE----MGPSDREQLRRHLEACPECLEEYGLEQAVKKLLKRCCKTEAAPEGLRSRLRLQIRVI 80 (84)
T ss_pred CHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhh
Confidence 46677 6678887755 789999998877763 1 0012344454557789999999999988753
No 13
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.31 E-value=92 Score=21.94 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHH
Q psy6101 64 GMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEV 104 (341)
Q Consensus 64 ~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~I 104 (341)
.||.+|+.+++.=+- .|..+....|+|++...+|
T Consensus 2 ~FT~~Ql~~L~~Qi~-------ayK~l~~~~pVP~~l~~~I 35 (37)
T PF08880_consen 2 PFTPAQLQELRAQIL-------AYKYLARNQPVPPQLQQAI 35 (37)
T ss_pred CCCHHHHHHHHHHHH-------HHHHHHcCCCCCHHHHHhh
Confidence 588999999986554 6999999999999887765
No 14
>COG3095 MukE Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=24.12 E-value=1.8e+02 Score=27.71 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=49.0
Q ss_pred hHHHHHhHHHHHHHhcCCCCHHH---------HHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHHhhh
Q psy6101 257 MLENGLLLSTFAAKYLDTMNEDL---------LKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHT 322 (341)
Q Consensus 257 mlELDLLLg~Fad~~l~~LseeE---------l~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir~~~ 322 (341)
+.|+|.+.|.-+ +|--||++- ++.|+.||++- +...|...++.+..-.+-....+.++++...
T Consensus 86 lseldmlvgkvl--cylylsperla~egifs~qelydell~la-de~kllk~vn~rssgsdldkqkl~ekvr~sl 157 (238)
T COG3095 86 LSELDMMVGKIL--CYLYLSPERLANEGIFTQQELYDELLTLA-DEAKLLKLVNNRSTGSDLDRQKLQEKVRSSL 157 (238)
T ss_pred HHHHHHHHhHhh--heeecCHHHHhhccccchHHHHHHHHhHh-hHHHHHHHHhccCccccccHHHHHHHHHHHH
Confidence 679999999876 455566654 45799999986 6789999999998777666677777777654
No 15
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=22.61 E-value=77 Score=31.80 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=38.7
Q ss_pred ccccccccCCchhhhhhhhhhhcceee-eccccchhhhhhccchhhhccccccceeeeecCCC
Q psy6101 115 KDRQARLRQPDLYETLLTLQHLGIKFY-GSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSN 176 (341)
Q Consensus 115 ~~k~~r~~~P~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (341)
.++++++|.|...+++..|+..|++.. .|-|-|..+..+-...-....|| ++|++|..
T Consensus 142 ~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFD----vII~~g~i 200 (303)
T PHA03398 142 DEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFD----IIICGGRK 200 (303)
T ss_pred CCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcccc----EEEECCCc
Confidence 577778999999999999999999963 66676655533333333333343 45566553
No 16
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=22.31 E-value=1.7e+02 Score=27.06 Aligned_cols=62 Identities=6% Similarity=0.097 Sum_probs=43.6
Q ss_pred hHHHHHHHhc--CCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhh-HHHHHHHHhhhhcccc
Q psy6101 263 LLSTFAAKYL--DTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFN-NEVMKLLQDHTKNKDR 327 (341)
Q Consensus 263 LLg~Fad~~l--~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~-~~Ii~~Ir~~~~n~~k 327 (341)
.+..|++.|. ..|+++|+..+-.+|..| ...|.++...-..+.+.. ...+++|+.....+.+
T Consensus 241 ~~~~~l~gY~~~~~L~~~e~~~l~~~l~~p---~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~ 305 (313)
T TIGR02906 241 KAKEIIEAYSSINPLSKEEKEVLYIDLAFP---HKFWKIGKQYYYKRKIWSEEKFLKKLEKIIEEEES 305 (313)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHhCh---HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhHHH
Confidence 4566777664 589999999999999998 477887766433344433 4677778777665443
No 17
>COG3141 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS , pqiA [General function prediction only]
Probab=20.59 E-value=2.3e+02 Score=24.07 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=38.5
Q ss_pred cchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCC
Q psy6101 255 RGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIP 307 (341)
Q Consensus 255 RGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP 307 (341)
--|+++-=.|..|+.+--..|.++++.++.-+|.. .-|-+..+.+...+|
T Consensus 29 DKMLd~Ad~L~e~L~ks~~~leeeq~E~Ls~flAe---nke~l~~~lk~~~~~ 78 (97)
T COG3141 29 DKMLDTADLLDEWLTKSPVSLEEEQREALSLFLAE---NKDVLSTILKTGKLP 78 (97)
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH---hHHHHHHHHhcCCCC
Confidence 45777777888888888888888888888888886 567777777665443
Done!