RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6101
         (341 letters)



>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria
           meningitidis, mc58 [TaxId: 487]}
          Length = 82

 Score = 80.2 bits (198), Expect = 8e-20
 Identities = 13/78 (16%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 242 ELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWAT 301
           ++ K ++ +Q+R RG+LE  L+   F  K  + +++  L ++ +++     D ++     
Sbjct: 6   DIAKRKIRFQTR-RGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEF--QDQELLALIN 62

Query: 302 GVRPIPLQFNNEVMKLLQ 319
           G           +++ ++
Sbjct: 63  GHSETDKGHLIPMLEKIR 80



 Score = 44.7 bits (106), Expect = 5e-07
 Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 43  RSRGGGRGCRLGD--FRHWLSN--SGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPL 98
           ++R   RG    D  F  ++      +++  L ++ +++     D ++     G      
Sbjct: 15  QTR---RGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEF--QDQELLALINGHSETDK 69

Query: 99  QFNNEVMKLLQ 109
                +++ ++
Sbjct: 70  GHLIPMLEKIR 80


>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
           protein 28, VPS28 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 104

 Score = 25.2 bits (55), Expect = 5.1
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 100 FNNEVMKLLQDHTKNKDRQARLRQPDLYETLLTLQHL 136
           F++EV  L  +   +KD++      ++Y  ++TL H+
Sbjct: 4   FHDEV-PLFDNSITSKDKEVIETLSEIYSIVITLDHV 39


>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE,
           C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
          Length = 68

 Score = 24.3 bits (53), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 89  WATGVRPIPLQFNNEVMKLLQDHT 112
           +A G R +PLQ     ++   DH 
Sbjct: 20  YALGNRHVPLQIMPGELRYHHDHV 43



 Score = 24.3 bits (53), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 299 WATGVRPIPLQFNNEVMKLLQDHT 322
           +A G R +PLQ     ++   DH 
Sbjct: 20  YALGNRHVPLQIMPGELRYHHDHV 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,279,242
Number of extensions: 59383
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 16
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)