BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6102
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFH 68
N VF DV IG E+VGR+V+ELF IVPKTAENFRALCTGE G G GK LHF G FH
Sbjct: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFH 74
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
RII +FMIQGGD +N NGTGGESIYG FEDENF K
Sbjct: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 41/222 (18%)
Query: 242 IFGCVRQGFGVAREVSYVEAENDKPLVLN------------------------------- 270
+FG V +G GVA+ + VE + +KP L
Sbjct: 148 VFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPE 207
Query: 271 ----QMEDVIR------TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 320
++DV + +KN GN +FK A +KY K +RY++ +
Sbjct: 208 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267
Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
+ + +LN+ A +LK ++ A++ C + L ++P+N KAL+RR + + ++Q L
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327
Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422
D ++A ++ P D+ I E+ V+++++ + EK YA+MF
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 73/97 (75%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF D++IG + GR+V+EL+ +VPKTA NFRALCTGE G GK GK LHF GS FHRIIP
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
FMIQGGD T NGTGGESIYG F DENFK K P
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGP 102
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 73/95 (76%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
+GN +V+ D+SIG+ GR+ +ELF VP TAENFRALCTGE G G+ GK L +TGS F
Sbjct: 17 QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFF 76
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF 102
HRIIPQFMIQGGD T +GTGGESIYG F DENF
Sbjct: 77 HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENF 111
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 71/96 (73%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+SI + GR+V+EL+ VPKTAENFRALCTGE GKG+ GK LH+ S FHR
Sbjct: 7 NPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHR 66
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+IP FMIQGGD T NGTGGESIYG F DE+F K
Sbjct: 67 VIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGK 102
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF D+SI GR++ ELF I P+T ENFRALCTGE G GK LH+ S FHRIIP
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRIIP 64
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
QFM QGGDITN NG+GGESIYG F DENF +K P
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQP 101
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF D+SI GR++ ELF I P+T ENFRALCTGE G GK LH+ S FHRIIP
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRIIP 64
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
QFM QGGDITN NG+GGESIYG F DENF +K P
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQP 101
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 70/102 (68%), Gaps = 7/102 (6%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G + GS F
Sbjct: 2 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 54
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
HR+IP FM Q GD TN NGTGG+SIYG F DENF LK + P
Sbjct: 55 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 96
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 70/102 (68%), Gaps = 7/102 (6%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G + GS F
Sbjct: 1 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
HR+IP FM Q GD TN NGTGG+SIYG F DENF LK + P
Sbjct: 54 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 95
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G + GS FH
Sbjct: 1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 53
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
R+IP FM Q GD TN NGTGG+SIYG F DENF LK + P
Sbjct: 54 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 94
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G + GS FH
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 54
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
R+IP FM Q GD TN NGTGG+SIYG F DENF LK + P
Sbjct: 55 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 95
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N +VF DV E +GR+ +ELF +IVP+TAENFRALCTGE G G F S FHR
Sbjct: 6 NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHR 58
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
+IP F+ QGGDIT +GTGG+SIYG FEDENF +K P
Sbjct: 59 VIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGP 98
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N +VF DVSIG ++VGRM IELF +VPKTAENFR CTGE+ K G + + GS FHR
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKD--GVPIGYKGSTFHR 67
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
+I FMIQGGD N +GTG SIY F DENFKL+ P
Sbjct: 68 VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAP 107
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
VFLDV+I GR+V+EL+ I P+T NF LCTG G GK+ GK LH+ GS FHR+I
Sbjct: 9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD T +GTGGESIYG F+DE F +K
Sbjct: 69 KNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMK 102
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 65/93 (69%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF DV IG++ VGR+VI LF +VPKT ENF AL TGE G G + GS FHR+I
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIK 70
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGDIT +GTGG SIYG F DENFKLK
Sbjct: 71 DFMIQGGDITTGDGTGGVSIYGETFPDENFKLK 103
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T+ NGTGG+SIYG FEDENF LK P
Sbjct: 55 IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGP 94
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE K + GS FHR
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-------KGFGYKGSCFHR 74
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 75 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 114
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 94
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 94
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 59
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 60 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 99
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 7/91 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ DV + +GR+V +L+ IVPKTAENFRALCTGE K + GS FHR+IP
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGE-------KGFGYAGSPFHRVIP 56
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFK 103
FM+QGGD T NGTGG+SIYG F DENFK
Sbjct: 57 DFMLQGGDFTAGNGTGGKSIYGGKFPDENFK 87
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 11 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 63
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 64 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 103
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ D++IG+E VGR+VI LF + VPKT ENF+ L +GE G G + GS FHR+I
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVIR 60
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD TNF+GTGG+SIYG F+DEN K+K
Sbjct: 61 NFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIK 93
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 65/93 (69%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF DV IG++ VGR+VI LF ++VPKT ENF AL TGE G G + GS FHR+I
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVIK 62
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD T +GTGG SIYG F DENFKLK
Sbjct: 63 DFMIQGGDFTARDGTGGMSIYGETFPDENFKLK 95
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N V++D+ IG + GR+ + L +VP TAENFR LCT E G G F GS FHR
Sbjct: 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 63
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIPQFM QGGD TN NGTGG+SIYG F+DENF LK P
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP 103
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF D++ +G + +LF +VPKTA NFRALCTGE G G + GSHFHR+IP
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVIP 56
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FM+QGGD T NGTGG+SIYG F DENF+LK
Sbjct: 57 DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLK 89
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N V++D+ IG + GR+ + L +VP TAENFR LCT E G G F GS FHR
Sbjct: 3 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIPQFM QGGD TN NGTGG+SIYG F+DENF LK P
Sbjct: 56 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP 95
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FH+
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHK 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRII 71
F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+ FHR++
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 71
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FM+QGGD + NG GGESIYG FEDE+F +K
Sbjct: 72 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRIIP 72
F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+ FHR++
Sbjct: 13 FFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVK 72
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FM+QGGD + NG GGESIYG FEDE+F +K
Sbjct: 73 DFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGG+ T+ NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRII 71
F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+ FHR++
Sbjct: 29 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FM+QGGD + NG GGESIYG FEDE+F +K
Sbjct: 89 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 122
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP FM QGG+ T+ NGTGG+SIYG FEDENF LK P
Sbjct: 56 IIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIP F QGGD T NGTGG+SIYG FEDENF LK P
Sbjct: 55 IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 94
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF D+ IG GR+V+EL IVP+TAENFRALCTGE G G + FHR+IP
Sbjct: 13 VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIP 65
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
QFM QGGD +GTGG+SIYG F+DENF+L+
Sbjct: 66 QFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLR 98
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 68/102 (66%), Gaps = 7/102 (6%)
Query: 4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFT 63
S+ KE + V+ DV EE +GR+V++L IVPKTA+NFR LC G+G +
Sbjct: 21 SMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YK 73
Query: 64 GSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
GS FHRIIP FM+QGGD T NGTGG SIYG F DENF+LK
Sbjct: 74 GSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELK 115
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 63/100 (63%), Gaps = 7/100 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N V+ D+ IG + GR+ L +VP TAENFR LCT E G G F GS FHR
Sbjct: 12 NPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFHR 64
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
IIPQF QGGD TN NGTGG+SIYG F+DENF LK P
Sbjct: 65 IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP 104
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Query: 5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTG 64
+ N +VF+D+++G +G+ ELF++IVPKT+ENFR CTGEY L + +
Sbjct: 54 LTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNL--PVGYKN 111
Query: 65 SHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+ FHR+I +FMIQGGD N NG+G SIYG F+DENF +K
Sbjct: 112 TIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIK 152
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 7/97 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ D+ IG+E +GR+VI LF VPKT +NF AL TGE G G + S FHR+I
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIK 67
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
FMIQGGD T +GTGG+SIYG F DENFKLK P
Sbjct: 68 DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 104
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 7/97 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ D+ IG+E +GR+VI LF VPKT +NF AL TGE G G + S FHR+I
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIK 67
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
FMIQGGD T +GTGG+SIYG F DENFKLK P
Sbjct: 68 DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 104
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 15 LDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRIIPQ 73
D+ I E VGR++ +LF I PKT +NF LC+GE G GK GK L + GS FHR++
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 74 FMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD + NG GGESIYG F+DENF LK
Sbjct: 84 FMIQGGDFSEGNGKGGESIYGGYFKDENFILK 115
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 7/97 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF ++SI ++ GR+V +L+ VPKTA+NFR L TG++G G + S FHR+IP
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
QFM+QGGD T NGTGG+SIYG F DENF++K P
Sbjct: 58 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 94
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 7/97 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF ++SI ++ GR+V +L+ VPKTA+NFR L TG++G G + S FHR+IP
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
QFM+QGGD T NGTGG+SIYG F DENF++K P
Sbjct: 59 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 95
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ D+ IG+E VGR++ LF VPKT +NF AL TGE K + S FHR+I
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-------KGFGYKNSKFHRVIK 70
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
FMIQGGD T +GTGG+SIYG F DENFKLK P
Sbjct: 71 DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 107
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ D+ IG+E VGR++ LF VPKT +NF AL TGE G G + S FHR+I
Sbjct: 8 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIK 60
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
FMIQGGD T +GTGG+SIYG F DENFKLK P
Sbjct: 61 DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 97
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ DV I E +GR+ I LF P T ENFR LCTGE+G G + S FHR+I
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVIQ 66
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD TNF+GTGG+SIYG F DEN +K
Sbjct: 67 NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK 99
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ DV I E +GR+ I LF P T ENFR LCTGE+G G + S FHR+I
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVIQ 66
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD TNF+GTGG+SIYG F DEN +K
Sbjct: 67 NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK 99
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 58/98 (59%), Gaps = 12/98 (12%)
Query: 13 VFLDV-----SIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
VF DV E KVGR+V LF VPKTA+NFR LC G+G + S F
Sbjct: 5 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTF 57
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
HRIIP FMIQGGD T NGTGG SIYG F DENF K
Sbjct: 58 HRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRK 95
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 59/93 (63%), Gaps = 7/93 (7%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
V+ D+ IG + +GR+VI LF VPKTA NF L G+G + GS FHR+I
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIA 61
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD T +GTGG SIYG F DENFKLK
Sbjct: 62 DFMIQGGDFTRGDGTGGRSIYGEKFADENFKLK 94
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K G YFK + A +YKK V +++ Y S S + + ++ A+ LN+A LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
+A+ AI C+ L ++ NN K LFRRG A +++N+FE D+++ L L PN++
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
++A ++++R L EK YA MF+
Sbjct: 269 QLAVCQQRIRRQLAREKKLYANMFE 293
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K G YFK + A +YKK V +++ Y S S + + ++ A+ LN+A LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
+A+ AI C+ L ++ NN K L RRG A +++N+FE D+++ L L PN++
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
++A ++++R L EK YA MF+
Sbjct: 269 QLAVCQQRIRRQLAREKKLYANMFE 293
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K G YFK + A +Y K V +++ S+ + K S+ AA LN+A LK
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
+ Y +A+ CD L ++ N K L+RRG AQ+ MN FE D+E+ L++ P ++
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
+I +K+ + H ++ TYA MF+
Sbjct: 390 QIFMCQKKAKEHNERDRRTYANMFK 414
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K G YFK + A +Y K V +++ S+ + K S+ AA LN+A LK
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
+ Y +A+ CD L ++ N K L+RRG AQ+ MN FE D+E+ L++ P ++
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
+I+ +K+ + H ++ YA MF+
Sbjct: 390 QISMCQKKAKEHNERDRRIYANMFK 414
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYI--KWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 337
K GN FK ++ +A ++Y+ A+ Y+ + Q K Q + LN+AA +
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMAL-AVKNPCHLNIAACLI 241
Query: 338 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
K K Y AI C+ +L E N KALFRRG+A+ + + D+ +A P+D+ I
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301
Query: 398 KEIAFVRKQMRHHLNLEKMTYARMFQ 423
+E+ + +Q + +K Y +F+
Sbjct: 302 RELRALAEQEKALYQKQKEMYKGIFK 327
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
IK GNE+FK N +++A KYK+A+ + + + ++ + LN+A K
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
K Y +AI+ +L ++ NNVKAL++ G A + E+ ++ +A L PN+ I
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQNG 425
+++ +K+T+ MF G
Sbjct: 161 SYELCVNKLKEARKKDKLTFGGMFDKG 187
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
E +G +V+EL+ PKT +NF +L + ++ G+ FHRII FMIQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81 ITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPG 115
T G GG SIYG FEDE ++P K+ G
Sbjct: 67 PTG-TGRGGASIYGKQFEDE------LHPDLKFTG 94
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
E +G +V+EL+ PKT +NF +L + ++ G+ FHRII FMIQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81 ITNFNGTGGESIYGPCFEDE 100
T G GG SIYG FEDE
Sbjct: 67 PTG-TGRGGASIYGKQFEDE 85
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
E +G +V+EL+ PKT +NF +L + ++ G+ FHRII FMIQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81 ITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPG 115
T G GG SIYG FEDE ++P K+ G
Sbjct: 67 PTG-TGRGGASIYGKQFEDE------LHPDLKFTG 94
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
VG + IE+F PKT ENF ALC Y + G FHR I FM+Q GD T
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 64
Query: 84 FNGTGGESIYGPCFEDE 100
G GG SI+G FEDE
Sbjct: 65 -TGRGGNSIWGKKFEDE 80
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
VG + IE+F PKT ENF ALC Y + G FHR I FM+Q GD T
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58
Query: 84 FNGTGGESIYGPCFEDE 100
G GG SI+G FEDE
Sbjct: 59 -TGRGGNSIWGKKFEDE 74
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G +EL+ + PKT NF LC E G + + FHR+IP F+IQGGD T
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPTG 96
Query: 84 FNGTGGESIYGPCFEDE 100
G GG+SIYG FEDE
Sbjct: 97 -TGKGGKSIYGEYFEDE 112
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
G + IEL+ PK NF LC Y + + FHR++P F++QGGD T
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCLEAY----------YDNTIFHRVVPGFIVQGGDPTG 82
Query: 84 FNGTGGESIYGPCFEDE 100
G+GGESIYG F+DE
Sbjct: 83 -TGSGGESIYGAPFKDE 98
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
G + ELF PK +NF AL Y K + FH+ I F+IQGGD T
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSASGYYKNTI----------FHKNIKGFIIQGGDPTG- 74
Query: 85 NGTGGESIYGPCFEDENFKLKGIYPKNKY 113
G GGESIYG F+DE IYP+ KY
Sbjct: 75 TGKGGESIYGRYFDDE------IYPELKY 97
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 333
+ KN GN Y+K Q Y+KA+ Y + + +A N+
Sbjct: 7 NSAEAWKNLGNAYYK-------QGDYQKAIEYYQ---------KALELDPNNASAWYNLG 50
Query: 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
K Y++AI L ++PNN KA +RRG A ++++ ++DY++AL+L PN+
Sbjct: 51 NAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Query: 394 QQILKEIAFVRKQM 407
+ + + +++
Sbjct: 111 AKAKQNLGNAKQKQ 124
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 16 DVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFM 75
D +I +G + +LF PKT ENF Y + G FHRII FM
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY----------YNGHTFHRIIKGFM 71
Query: 76 IQGGDITNFNGTGGESIYGPCFEDE 100
IQ GD T G GGESI+G FEDE
Sbjct: 72 IQTGDPTG-TGMGGESIWGGEFEDE 95
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEY------GKGKLGKALH----F 62
V++D+ + E +GR+ I+LF+ P ENF L G+ G GK H +
Sbjct: 17 VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 63 TGSHFHRIIPQFMIQGGDITNFNGTGGESIY-----GPCFED 99
G FH ++ I GDI N NG+ ++Y P F D
Sbjct: 77 EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD 118
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
AI +C ++L MEP+NV AL R A + +++ +QDYE A + NDQQI
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G + I LF KT +NF Y + FHR+I FM+Q GD +
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSINGY----------YNNCIFHRVIKHFMVQTGDPSG 63
Query: 84 FNGTGGESIYGPCFEDENF 102
+GTGGESI+G FEDE F
Sbjct: 64 -DGTGGESIWGNEFEDEFF 81
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
AI +C ++L EP+NV AL R A + +++ +QDYE A + NDQQI
Sbjct: 291 AIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQI 342
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
AI +C ++L EP+NV AL R A + +++ +QDYE A + NDQQI
Sbjct: 314 AIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQI 365
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL-NMAAVQLK 338
KN GNEYFK A R Y +AV+ R A L N AA K
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVK-----------------RDPENAILYSNRAACLTK 59
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395
++RA++ CD + ++ +K R+ V+M + + + YE AL + P++++
Sbjct: 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKHFRSYYTAALLNM 332
+ I GN ++ + +A KY A+ +K + + T LLN
Sbjct: 13 AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 72
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
+L + Y ++ C IL +NVKA F+RG+A ++ N ++ D+ + L+L P
Sbjct: 73 CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 131
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKHFRSYYTAALLNM 332
+ I GN ++ + +A KY A+ +K + + T LLN
Sbjct: 7 AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 66
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
+L + Y ++ C IL +NVKA F+RG+A ++ N ++ D+ + L+L P
Sbjct: 67 CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 333
D+ +KN GNE F+ A + Y +A+ K K + Y N A
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAI-----------KRNPKDAKLYS-----NRA 57
Query: 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
A K ++ A+ C++ + +EP +K R+ A +M ++ + + Y++ALDL
Sbjct: 58 ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
NS ++ L + Q Y +A+ Y Q + + ++Y N+ K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYY----QKALELDPNNAEAWY-----NLGNAYYKQG 57
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
Y AI L ++PNN +A + G A ++++ ++ Y++AL+L PN+ + + +
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Query: 401 AFVRKQ 406
+++
Sbjct: 118 GNAKQK 123
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 386 ALDLLPNDQQILKEIAFVRKQMRHH 410
AL L PN+ ++ + IAF +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRH 160
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKI 135
Query: 386 ALDLLPNDQQILKEIAFVRKQMRHH 410
AL L PN+ ++ + IAF +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRH 160
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 386 ALDLLPNDQQILKEIAFVRKQMRHH 410
AL L PN+ ++ + IAF +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRH 160
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLK 338
NS ++ L + Q Y +A+ Y QK Y A N+ K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYY-----------QKALELYPNNAEAWYNLGNAYYK 55
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
Y AI L + PNN +A + G A ++++ ++ Y++AL+L PN+ + +
Sbjct: 56 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
Query: 399 EIAFVRKQ 406
+ +++
Sbjct: 116 NLGNAKQK 123
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYI-----KWYNQSQSKTQQKHFR---SYYTAAL--- 329
N GN Y+K +A Y+KA+ WYN + +Q + YY AL
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 330 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
N+ K Y AI L ++P + +A + G A ++++ ++
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 383 YEQALDLLP 391
Y++AL+L P
Sbjct: 126 YQKALELDP 134
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
A, Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
A, Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTG--EYGK-----GKLGKALHFTGSHFHRIIPQFMIQ 77
G + I LF + PKT NF L G +Y G G + G+ FHR+I FMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGP--FYDGAVFHRVIQGFMIQ 90
Query: 78 GGD 80
GGD
Sbjct: 91 GGD 93
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG 79
G + ++LF P+TA NF K H+ G+ FHR+I FMIQGG
Sbjct: 9 GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQGG 53
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 386 ALDLLPNDQQILKEIAFVRKQMRHH 410
AL L PN+ ++ + IA+ +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAYSYEQMGSH 160
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G + +EL+ P NF LC Y + + FHR++ F++QGGD T
Sbjct: 30 LGDLDVELWARECPLACRNFVQLCLEGY----------YVNTIFHRVVKDFIVQGGDPTG 79
Query: 84 FNGTGGESIYGPCFEDENFKLKGIYPKNKY 113
G GG F+ + F ++ +P+ K+
Sbjct: 80 -TGRGGADT---TFDGKPFDVE-THPRLKF 104
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 16/130 (12%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K GNE K+ A Y KA+ N AA K
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAI----------------ELNPANAVYFCNRAAAYSK 58
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
Y A+ C+ + ++P KA R G A S+N + + Y++AL+L P+++
Sbjct: 59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118
Query: 399 EIAFVRKQMR 408
+ ++R
Sbjct: 119 NLKIAELKLR 128
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 335
+ ++ GNE FK A Y +A+ + Q Q+ + N AA
Sbjct: 28 VEQLRKEGNELFKCGDYGGALAAYTQAL-GLDATPQDQAVLHR------------NRAAC 74
Query: 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-- 393
LK + Y +A + + +VKAL+RR +A + +Q + D ++ + L P +
Sbjct: 75 HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134
Query: 394 -QQILKEIA 401
Q+ L+ I+
Sbjct: 135 FQEALRNIS 143
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
A N+ K Y AI L ++PNN +A + G A ++++ ++ Y++AL
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 388 DLLPNDQQILKEIAFVRKQ 406
+L PN+ + + + +++
Sbjct: 71 ELDPNNAEAKQNLGNAKQK 89
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 34/157 (21%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K N+YFK +A + Y +A+ N S + YY N + L+
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIEL----NPSNA--------IYYG----NRSLAYLR 52
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---- 394
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 53 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112
Query: 395 ------QILKEIAFVR--------KQMRHHLNLEKMT 417
+I+K+ AF R + + L++E MT
Sbjct: 113 KYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 149
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG 79
G + +EL + PKT ENF K H+ G+ FHR+I FMIQGG
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYV----------KKGHYDGTIFHRVINGFMIQGG 57
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG 79
G + IEL + P+ ++F LC +Y F + FHR I FMIQGG
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY----------FDDTIFHRCIRNFMIQGG 60
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 34/157 (21%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K N+YFK +A IK+Y+Q+ YY N + L+
Sbjct: 16 LKTQANDYFKAKDYENA----------IKFYSQAIELNPSNAI--YYG----NRSLAYLR 59
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---- 394
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 60 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 119
Query: 395 ------QILKEIAFVR--------KQMRHHLNLEKMT 417
+I+K+ AF R + + L++E MT
Sbjct: 120 KYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 156
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
G + +EL + PKT ENF LC Y + G+ FHR I F+IQ G
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQ-GGDPTG 77
Query: 85 NGTGGESIYGPCFEDE 100
GTGGES +G F+DE
Sbjct: 78 TGTGGESYWGKPFKDE 93
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K N+YFK +A IK+Y+Q+ YY N + L+
Sbjct: 24 LKTQANDYFKAKDYENA----------IKFYSQAIELNPSNAI--YYG----NRSLAYLR 67
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394
+ Y A+N + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 68 TECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 123
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDIT 82
G + +EL K P + +NF + + + FHR+IP FMIQGG T
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF----------YNNTTFHRVIPGFMIQGGGFT 61
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDIT 82
G + +EL K P + +NF + + + FHR+IP FMIQGG T
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF----------YNNTTFHRVIPGFMIQGGGFT 61
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 331 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390
NM+ L A ++L E N KALFRR +A+++ ++ +D + L
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 391 PNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQ 423
P ++ +E+ V ++ ++TY++MFQ
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 337
+K+ GN++F+ +KY A++Y W + K +Y+ N++A +
Sbjct: 8 ALKDKGNQFFR-------NKKYDDAIKYYNW------ALELKEDPVFYS----NLSACYV 50
Query: 338 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
K+ + + L ++P+ K L RR A + F + D
Sbjct: 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 347 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
N D L ++ NN + RG+ + N++Q +D+++A +L P
Sbjct: 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG 79
G +VI+ F P+T +NF C + + + FHR+I FMIQGG
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGG 53
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli
(Eppib)
Length = 164
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG 79
G +VI+ F P+T +NF C + + + FHR+I FMIQGG
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF----------YNNTIFHRVINGFMIQGG 53
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 10/146 (6%)
Query: 265 KPLVLNQMEDVIRTIKNSGNE--------YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316
K L ++ D++ ++N+ E Y + +A+ + K+ W N ++ T
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163
Query: 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
+ N AA K ++ AI C+ + +PN V+A R+ AQ+++ +
Sbjct: 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 223
Query: 377 EQGLQ--DYEQALDLLPNDQQILKEI 400
L+ D + D N+ +EI
Sbjct: 224 ASALETLDAARTKDAEVNNGSSAREI 249
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
G EYF + +A + Y + + K + R Y N AA K ++
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMI-----------KRAPEDARGYS-----NRAAALAKLMSF 54
Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
AI C+ + +PN V+A R+ AQ+++ + L+ + A
Sbjct: 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+KN GN +F ++A + Y+ A+ + F S N++A +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIEL---------DPNEPVFYS-------NISACYIS 71
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
++ I L ++P++ KAL RR A S+ NF + D
Sbjct: 72 TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+KN GN +F ++A + Y+ A+ + F S N++A +
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIEL---------DPNEPVFYS-------NISACYIS 67
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
++ I L ++P++ KAL RR A S+ NF + D
Sbjct: 68 TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 111
>pdb|1OUO|A Chain A, Crystal Structure Of The Periplasmic Endonuclease Vvn
Length = 210
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 32 FKHIVPKTAENFRALCTGEYGKGKLGK---ALHFTGSHFHRIIPQFMIQGGDITNFN--- 85
++H+VP C + G+ K + H + P GD +NFN
Sbjct: 60 WEHVVPAWQFGHHRQCWQKGGRKNCSKNDQQFRLXEADLHNLTPAIGEVNGDRSNFNFSQ 119
Query: 86 --GTGGESIYGPCFEDENFKLKGIYPKNKYPG 115
G G S YG C NFK + + P ++ G
Sbjct: 120 WNGVDGVS-YGRCEXQVNFKQRKVXPPDRARG 150
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSM-----------NNFEQGLQDYEQALDLLP 391
+ AI ++ LL++P +A++ G A S +NF+ Q ++QA+D P
Sbjct: 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122
Query: 392 NDQQILKEIAFVRKQMRHH 410
++ LK + K + H
Sbjct: 123 DNTHYLKSLEMTAKAPQLH 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,022,228
Number of Sequences: 62578
Number of extensions: 489117
Number of successful extensions: 1290
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 143
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)