Query psy6102
Match_columns 426
No_of_seqs 346 out of 3396
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:39:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 4.4E-65 9.4E-70 485.9 18.6 316 8-423 6-372 (372)
2 KOG0880|consensus 100.0 1.2E-45 2.5E-50 324.2 12.2 161 8-275 37-199 (217)
3 KOG0879|consensus 100.0 5.2E-45 1.1E-49 300.6 10.6 172 2-275 2-174 (177)
4 KOG0881|consensus 100.0 2.7E-41 5.8E-46 275.4 6.2 150 9-274 8-159 (164)
5 KOG0111|consensus 100.0 8.8E-40 1.9E-44 290.9 6.8 162 7-275 133-294 (298)
6 cd01926 cyclophilin_ABH_like c 100.0 1.1E-38 2.4E-43 285.4 12.9 162 11-274 1-162 (164)
7 PTZ00060 cyclophilin; Provisio 100.0 1.9E-38 4.1E-43 288.2 13.6 167 7-274 12-178 (183)
8 PLN03149 peptidyl-prolyl isome 100.0 3.3E-38 7.1E-43 286.9 12.1 167 7-275 15-183 (186)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 1.8E-38 3.8E-43 277.5 9.4 132 21-262 5-136 (158)
10 PTZ00221 cyclophilin; Provisio 100.0 7E-38 1.5E-42 293.4 12.7 165 7-275 49-216 (249)
11 KOG0883|consensus 100.0 2.3E-36 5E-41 288.3 8.1 142 22-274 284-427 (518)
12 cd01927 cyclophilin_WD40 cyclo 100.0 7.1E-36 1.5E-40 262.6 9.6 141 22-273 4-146 (148)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 2E-35 4.4E-40 259.0 10.0 141 22-273 4-145 (146)
14 KOG0882|consensus 100.0 7.8E-36 1.7E-40 290.1 7.9 153 11-274 400-554 (558)
15 cd01928 Cyclophilin_PPIL3_like 100.0 3.2E-35 7E-40 259.7 11.1 146 13-274 3-150 (153)
16 KOG0884|consensus 100.0 2.2E-35 4.7E-40 239.5 8.1 142 13-270 3-147 (161)
17 cd01923 cyclophilin_RING cyclo 100.0 1.4E-34 3E-39 257.5 11.0 146 13-274 2-149 (159)
18 cd01921 cyclophilin_RRM cyclop 100.0 1.9E-33 4E-38 252.1 10.1 142 22-274 4-155 (166)
19 KOG0865|consensus 100.0 1.4E-33 3.1E-38 248.5 8.0 157 9-272 2-161 (167)
20 PRK10903 peptidyl-prolyl cis-t 100.0 3.9E-33 8.4E-38 254.3 10.8 155 7-273 25-184 (190)
21 cd01925 cyclophilin_CeCYP16-li 100.0 1.1E-32 2.4E-37 248.0 11.3 149 10-274 5-156 (171)
22 PRK10791 peptidyl-prolyl cis-t 100.0 1.7E-32 3.6E-37 244.8 11.2 147 23-273 7-158 (164)
23 cd01920 cyclophilin_EcCYP_like 100.0 5.8E-32 1.3E-36 239.6 10.0 144 22-272 4-152 (155)
24 cd01924 cyclophilin_TLP40_like 100.0 1.7E-30 3.8E-35 234.2 9.9 136 21-259 3-165 (176)
25 KOG0885|consensus 100.0 1.5E-30 3.3E-35 247.9 9.0 116 7-177 9-125 (439)
26 cd00317 cyclophilin cyclophili 100.0 4.8E-29 1E-33 219.3 10.4 139 22-272 4-144 (146)
27 PF00160 Pro_isomerase: Cyclop 99.9 2.8E-27 6.1E-32 210.1 11.9 148 14-273 1-151 (155)
28 KOG0415|consensus 99.9 2.1E-27 4.5E-32 224.8 9.4 142 12-268 2-152 (479)
29 KOG0543|consensus 99.8 1.5E-20 3.3E-25 184.1 16.3 155 270-425 202-356 (397)
30 KOG0553|consensus 99.8 1.3E-19 2.9E-24 171.2 13.8 125 271-411 76-200 (304)
31 KOG4234|consensus 99.7 5.4E-16 1.2E-20 138.6 12.5 136 270-416 89-224 (271)
32 KOG0545|consensus 99.6 5.6E-15 1.2E-19 135.8 14.9 159 265-423 167-328 (329)
33 PRK15359 type III secretion sy 99.6 1.2E-14 2.5E-19 127.5 14.4 115 278-408 26-140 (144)
34 KOG0548|consensus 99.6 3.8E-15 8.2E-20 150.0 12.5 117 275-407 357-473 (539)
35 PLN03088 SGT1, suppressor of 99.6 3.3E-14 7.2E-19 142.8 15.3 118 277-410 3-120 (356)
36 KOG4648|consensus 99.5 1.2E-14 2.7E-19 139.1 8.9 119 271-405 92-210 (536)
37 KOG0547|consensus 99.5 5.6E-14 1.2E-18 140.0 13.0 129 269-413 108-237 (606)
38 PRK15363 pathogenicity island 99.5 2.7E-13 5.8E-18 118.7 14.0 105 273-393 32-136 (157)
39 KOG4626|consensus 99.5 1.2E-13 2.6E-18 140.7 13.1 153 239-414 254-408 (966)
40 KOG0550|consensus 99.5 9E-14 1.9E-18 136.2 9.7 139 269-423 242-380 (486)
41 KOG4626|consensus 99.5 1.2E-13 2.7E-18 140.6 10.8 130 274-420 250-379 (966)
42 TIGR02552 LcrH_SycD type III s 99.5 1.3E-12 2.9E-17 112.1 14.4 117 275-407 16-132 (135)
43 KOG0548|consensus 99.4 4.9E-13 1.1E-17 134.9 10.6 113 276-404 2-114 (539)
44 KOG1126|consensus 99.4 5.8E-13 1.3E-17 137.2 10.6 142 274-415 419-578 (638)
45 PRK11189 lipoprotein NlpI; Pro 99.4 4.7E-12 1E-16 124.2 16.5 105 275-395 63-167 (296)
46 TIGR00990 3a0801s09 mitochondr 99.4 7.2E-12 1.6E-16 134.9 17.1 142 274-415 329-488 (615)
47 TIGR00990 3a0801s09 mitochondr 99.3 1.9E-11 4.1E-16 131.7 16.9 123 276-398 365-505 (615)
48 KOG1155|consensus 99.3 1.3E-11 2.7E-16 122.7 14.1 124 276-415 330-453 (559)
49 PRK10370 formate-dependent nit 99.3 1.4E-11 3E-16 113.8 13.5 110 275-400 72-184 (198)
50 PRK10370 formate-dependent nit 99.3 6.9E-11 1.5E-15 109.1 15.9 118 288-422 51-171 (198)
51 KOG1126|consensus 99.3 2.8E-11 6E-16 124.9 13.9 129 274-418 487-615 (638)
52 PRK15359 type III secretion sy 99.3 5.1E-11 1.1E-15 104.4 13.5 102 296-416 13-114 (144)
53 KOG0551|consensus 99.3 2E-11 4.4E-16 116.9 11.7 109 275-395 80-188 (390)
54 PF13414 TPR_11: TPR repeat; P 99.3 1.4E-11 3.1E-16 93.5 8.1 67 325-391 2-69 (69)
55 TIGR02795 tol_pal_ybgF tol-pal 99.3 7.9E-11 1.7E-15 98.0 12.8 110 276-401 2-117 (119)
56 KOG1155|consensus 99.3 1.1E-10 2.4E-15 116.2 15.1 131 275-422 363-493 (559)
57 TIGR02521 type_IV_pilW type IV 99.2 4E-10 8.7E-15 103.5 17.0 124 276-415 65-190 (234)
58 PRK12370 invasion protein regu 99.2 1.5E-10 3.3E-15 123.1 15.6 126 275-416 337-463 (553)
59 KOG0376|consensus 99.2 1.1E-11 2.5E-16 124.2 6.5 121 275-411 3-123 (476)
60 PRK12370 invasion protein regu 99.2 1.7E-10 3.6E-15 122.8 15.7 112 288-415 316-427 (553)
61 PRK15179 Vi polysaccharide bio 99.2 1.7E-10 3.8E-15 124.4 15.4 130 275-421 85-214 (694)
62 KOG4642|consensus 99.2 4.7E-11 1E-15 109.8 9.3 101 274-390 8-108 (284)
63 PRK09782 bacteriophage N4 rece 99.2 2.3E-10 5E-15 127.9 16.8 122 278-415 611-732 (987)
64 TIGR02521 type_IV_pilW type IV 99.2 4.7E-10 1E-14 103.0 15.6 126 276-415 99-224 (234)
65 COG3063 PilF Tfp pilus assembl 99.2 7.9E-10 1.7E-14 101.6 15.4 130 269-414 28-159 (250)
66 PRK09782 bacteriophage N4 rece 99.2 4.7E-10 1E-14 125.5 16.3 111 288-415 588-698 (987)
67 cd00189 TPR Tetratricopeptide 99.2 2.6E-10 5.7E-15 88.4 10.3 99 278-392 2-100 (100)
68 PRK15331 chaperone protein Sic 99.2 3E-10 6.5E-15 100.0 11.6 119 275-410 36-154 (165)
69 KOG0547|consensus 99.2 1.9E-10 4.1E-15 115.1 11.4 143 273-415 323-483 (606)
70 TIGR02552 LcrH_SycD type III s 99.2 6.5E-10 1.4E-14 95.3 13.2 94 322-415 13-106 (135)
71 PRK11189 lipoprotein NlpI; Pro 99.1 1E-09 2.3E-14 107.6 16.0 117 288-416 38-154 (296)
72 PF13414 TPR_11: TPR repeat; P 99.1 1.4E-10 3.1E-15 87.8 7.6 67 275-357 2-69 (69)
73 PRK02603 photosystem I assembl 99.1 9E-10 1.9E-14 99.2 14.1 107 274-393 33-153 (172)
74 KOG0624|consensus 99.1 4.7E-10 1E-14 108.0 12.7 111 275-401 37-147 (504)
75 KOG1125|consensus 99.1 1.4E-10 3E-15 118.2 9.1 121 275-411 429-559 (579)
76 PF13429 TPR_15: Tetratricopep 99.1 1.8E-10 3.8E-15 111.8 9.5 126 274-415 144-269 (280)
77 PRK15174 Vi polysaccharide exp 99.1 1.4E-09 3E-14 118.0 16.1 123 277-415 247-373 (656)
78 TIGR03302 OM_YfiO outer membra 99.1 1.9E-09 4.1E-14 101.6 15.1 110 273-398 30-153 (235)
79 PF12895 Apc3: Anaphase-promot 99.1 2.4E-10 5.3E-15 90.4 7.6 82 288-386 1-84 (84)
80 PRK15174 Vi polysaccharide exp 99.1 1.6E-09 3.6E-14 117.4 16.4 124 281-421 217-344 (656)
81 COG5010 TadD Flp pilus assembl 99.1 1.3E-09 2.8E-14 101.9 13.2 125 275-415 99-223 (257)
82 PRK15363 pathogenicity island 99.1 3.1E-09 6.7E-14 93.2 13.9 100 320-420 28-128 (157)
83 TIGR02917 PEP_TPR_lipo putativ 99.1 2.3E-09 5E-14 117.9 15.7 129 276-422 770-898 (899)
84 PF13432 TPR_16: Tetratricopep 99.1 5.9E-10 1.3E-14 83.5 7.7 65 330-394 1-65 (65)
85 CHL00033 ycf3 photosystem I as 99.1 3.1E-09 6.7E-14 95.3 13.6 108 274-394 33-154 (168)
86 TIGR03302 OM_YfiO outer membra 99.0 4.2E-09 9.2E-14 99.2 14.8 130 275-421 69-229 (235)
87 PLN02789 farnesyltranstransfer 99.0 5E-09 1.1E-13 103.6 15.7 117 275-407 70-189 (320)
88 KOG0624|consensus 99.0 1.4E-08 3E-13 98.0 17.7 200 193-408 38-271 (504)
89 PRK11788 tetratricopeptide rep 99.0 8.2E-09 1.8E-13 104.2 17.1 123 276-415 180-303 (389)
90 PRK11447 cellulose synthase su 99.0 1.1E-08 2.3E-13 117.9 19.5 121 279-415 354-516 (1157)
91 COG3063 PilF Tfp pilus assembl 99.0 2.6E-09 5.6E-14 98.2 11.4 124 275-414 68-193 (250)
92 KOG2076|consensus 99.0 9.8E-09 2.1E-13 109.3 16.6 142 264-422 127-268 (895)
93 KOG1173|consensus 99.0 4.3E-09 9.3E-14 107.2 13.2 123 275-406 413-535 (611)
94 PLN02789 farnesyltranstransfer 99.0 9.5E-09 2.1E-13 101.7 15.5 121 285-422 46-169 (320)
95 TIGR02917 PEP_TPR_lipo putativ 99.0 7E-09 1.5E-13 114.1 16.0 126 274-415 123-248 (899)
96 PRK10049 pgaA outer membrane p 99.0 7.4E-09 1.6E-13 114.3 16.1 123 275-414 48-170 (765)
97 KOG1125|consensus 99.0 2.7E-09 5.9E-14 108.9 11.4 151 271-421 314-525 (579)
98 PRK11788 tetratricopeptide rep 99.0 1.8E-08 3.8E-13 101.8 17.4 95 326-421 180-275 (389)
99 KOG0553|consensus 99.0 4.2E-09 9.2E-14 100.3 10.9 96 326-422 81-176 (304)
100 KOG0550|consensus 99.0 5.4E-09 1.2E-13 103.0 12.0 142 275-420 202-347 (486)
101 PRK11447 cellulose synthase su 98.9 1.3E-08 2.9E-13 117.2 16.0 119 281-415 274-406 (1157)
102 PRK10803 tol-pal system protei 98.9 2.5E-08 5.4E-13 96.0 14.7 112 276-403 142-260 (263)
103 COG4783 Putative Zn-dependent 98.9 3.3E-08 7.1E-13 99.6 15.1 135 275-425 305-439 (484)
104 KOG4555|consensus 98.9 2.9E-08 6.2E-13 83.7 12.0 103 273-391 40-146 (175)
105 PRK15179 Vi polysaccharide bio 98.9 3.9E-08 8.4E-13 106.4 16.4 104 275-394 119-222 (694)
106 PF13371 TPR_9: Tetratricopept 98.9 1E-08 2.3E-13 78.4 8.6 71 333-403 2-72 (73)
107 cd00189 TPR Tetratricopeptide 98.9 5.8E-08 1.2E-12 74.9 12.6 89 328-416 2-90 (100)
108 KOG4162|consensus 98.9 1.3E-08 2.8E-13 106.9 11.2 105 275-395 683-789 (799)
109 KOG2003|consensus 98.9 1.6E-08 3.6E-13 100.4 11.2 128 275-418 489-616 (840)
110 PF13432 TPR_16: Tetratricopep 98.9 7E-09 1.5E-13 77.6 6.7 65 280-360 1-65 (65)
111 KOG1128|consensus 98.8 2.3E-08 4.9E-13 104.6 10.7 131 275-422 484-614 (777)
112 PLN03088 SGT1, suppressor of 98.8 6.4E-08 1.4E-12 97.4 13.8 89 329-417 5-93 (356)
113 PF13429 TPR_15: Tetratricopep 98.8 4.2E-08 9E-13 95.2 11.7 128 276-417 110-237 (280)
114 PF14559 TPR_19: Tetratricopep 98.8 1.9E-08 4.1E-13 75.8 7.3 68 336-403 1-68 (68)
115 COG5010 TadD Flp pilus assembl 98.8 8.7E-08 1.9E-12 89.8 13.1 128 280-423 70-197 (257)
116 CHL00033 ycf3 photosystem I as 98.8 1.1E-07 2.3E-12 85.3 13.1 113 282-408 5-120 (168)
117 COG4235 Cytochrome c biogenesi 98.8 7E-08 1.5E-12 92.4 12.1 116 275-406 155-273 (287)
118 PRK10866 outer membrane biogen 98.8 3.3E-07 7.2E-12 87.3 16.7 127 275-414 31-181 (243)
119 PF06552 TOM20_plant: Plant sp 98.8 1.1E-07 2.3E-12 84.8 12.1 109 292-416 7-136 (186)
120 PF13512 TPR_18: Tetratricopep 98.7 1.2E-07 2.7E-12 81.8 11.8 113 275-400 9-139 (142)
121 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3.4E-08 7.4E-13 99.7 9.6 71 319-389 68-141 (453)
122 PF13525 YfiO: Outer membrane 98.7 3.2E-07 6.9E-12 85.1 15.2 126 275-413 4-146 (203)
123 TIGR02795 tol_pal_ybgF tol-pal 98.7 3.3E-07 7.1E-12 76.0 13.1 90 326-415 2-97 (119)
124 PRK10049 pgaA outer membrane p 98.7 3E-07 6.6E-12 101.6 16.6 114 285-415 24-137 (765)
125 PRK14574 hmsH outer membrane p 98.7 2.3E-07 5.1E-12 102.2 15.0 146 275-422 33-196 (822)
126 PRK02603 photosystem I assembl 98.7 2.1E-07 4.6E-12 83.8 11.8 90 322-411 31-123 (172)
127 PF14559 TPR_19: Tetratricopep 98.7 8.1E-08 1.8E-12 72.3 7.2 68 286-369 1-68 (68)
128 PF13371 TPR_9: Tetratricopept 98.6 1.2E-07 2.7E-12 72.3 8.0 70 283-368 2-71 (73)
129 KOG1308|consensus 98.6 1.9E-08 4.1E-13 97.3 3.6 105 271-391 109-213 (377)
130 COG1729 Uncharacterized protei 98.6 4.4E-07 9.5E-12 86.0 12.6 115 276-403 141-258 (262)
131 PRK14720 transcript cleavage f 98.6 3.7E-07 8.1E-12 100.1 13.7 121 275-414 30-169 (906)
132 KOG2002|consensus 98.6 3.2E-07 6.9E-12 98.7 12.6 121 275-408 269-390 (1018)
133 PRK11906 transcriptional regul 98.6 7.6E-07 1.7E-11 90.2 14.8 130 278-423 257-401 (458)
134 KOG1129|consensus 98.6 2.4E-07 5.2E-12 89.2 8.9 139 276-414 290-449 (478)
135 COG4785 NlpI Lipoprotein NlpI, 98.6 7.4E-07 1.6E-11 81.5 11.5 111 274-400 63-173 (297)
136 COG4235 Cytochrome c biogenesi 98.5 2E-06 4.4E-11 82.5 14.8 102 322-424 152-256 (287)
137 PRK10153 DNA-binding transcrip 98.5 2E-06 4.2E-11 90.6 15.8 120 275-395 338-488 (517)
138 PF13424 TPR_12: Tetratricopep 98.5 1.7E-07 3.6E-12 72.7 5.9 67 323-389 2-75 (78)
139 KOG1173|consensus 98.5 1.1E-06 2.4E-11 90.0 13.2 105 318-422 406-517 (611)
140 KOG3060|consensus 98.5 2.4E-06 5.2E-11 79.9 14.3 137 277-413 87-244 (289)
141 PF12895 Apc3: Anaphase-promot 98.5 3.1E-07 6.7E-12 72.5 7.1 78 339-417 2-81 (84)
142 KOG2076|consensus 98.5 2.8E-06 6.2E-11 91.0 16.1 120 244-391 153-272 (895)
143 KOG4162|consensus 98.5 1.5E-06 3.2E-11 91.7 13.6 123 276-414 650-774 (799)
144 KOG1840|consensus 98.5 1.7E-06 3.6E-11 90.1 13.7 134 274-415 239-388 (508)
145 PF09976 TPR_21: Tetratricopep 98.5 1E-06 2.2E-11 77.1 10.3 99 275-387 47-145 (145)
146 PF13424 TPR_12: Tetratricopep 98.5 4.1E-07 8.9E-12 70.5 6.9 74 274-356 3-76 (78)
147 COG2956 Predicted N-acetylgluc 98.5 2.6E-06 5.7E-11 82.1 13.4 93 324-416 178-271 (389)
148 COG4783 Putative Zn-dependent 98.5 2E-06 4.3E-11 87.0 13.2 118 274-407 338-455 (484)
149 KOG2002|consensus 98.5 8.5E-07 1.9E-11 95.5 11.1 118 275-408 306-428 (1018)
150 PF09976 TPR_21: Tetratricopep 98.5 6.8E-06 1.5E-10 71.8 14.9 130 275-419 10-142 (145)
151 PRK14574 hmsH outer membrane p 98.5 2.2E-06 4.8E-11 94.5 14.3 125 276-417 102-226 (822)
152 KOG1128|consensus 98.5 5E-07 1.1E-11 94.8 8.7 120 282-416 456-575 (777)
153 PF12688 TPR_5: Tetratrico pep 98.4 3.8E-06 8.3E-11 71.1 12.4 94 327-420 2-101 (120)
154 TIGR00540 hemY_coli hemY prote 98.4 7.2E-06 1.6E-10 84.1 16.4 126 274-415 82-208 (409)
155 PF12688 TPR_5: Tetratrico pep 98.4 2.2E-06 4.8E-11 72.6 10.4 99 277-388 2-103 (120)
156 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2.7E-06 5.8E-11 86.2 12.5 72 269-356 68-142 (453)
157 TIGR00540 hemY_coli hemY prote 98.4 3.2E-06 6.9E-11 86.8 13.5 129 274-420 261-395 (409)
158 KOG1156|consensus 98.4 1.6E-06 3.4E-11 90.0 10.9 121 277-413 8-128 (700)
159 KOG1310|consensus 98.4 1.5E-06 3.2E-11 88.3 9.6 115 270-400 368-485 (758)
160 KOG1840|consensus 98.3 1.6E-05 3.5E-10 82.8 16.6 134 274-415 323-471 (508)
161 cd05804 StaR_like StaR_like; a 98.3 6.5E-06 1.4E-10 82.1 13.4 144 276-420 43-211 (355)
162 COG2956 Predicted N-acetylgluc 98.3 1.2E-05 2.7E-10 77.5 14.4 164 239-421 71-240 (389)
163 KOG3060|consensus 98.3 2.9E-05 6.3E-10 72.8 15.9 89 275-379 153-244 (289)
164 cd05804 StaR_like StaR_like; a 98.3 6.4E-06 1.4E-10 82.1 12.5 99 278-392 116-218 (355)
165 PRK10803 tol-pal system protei 98.3 1.1E-05 2.4E-10 77.7 13.3 97 325-422 141-244 (263)
166 PRK10747 putative protoheme IX 98.3 2.7E-05 5.9E-10 79.6 16.5 126 272-414 80-207 (398)
167 PRK15331 chaperone protein Sic 98.3 1.5E-05 3.3E-10 70.4 12.0 100 316-415 27-126 (165)
168 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.1E-05 4.6E-10 79.7 14.0 109 289-416 182-290 (395)
169 KOG1174|consensus 98.2 2.1E-05 4.5E-10 78.2 13.0 140 275-414 231-388 (564)
170 KOG0543|consensus 98.2 7.3E-06 1.6E-10 81.4 10.0 100 276-391 257-357 (397)
171 PF13525 YfiO: Outer membrane 98.2 8.1E-05 1.8E-09 68.9 16.4 128 275-415 41-199 (203)
172 KOG2003|consensus 98.2 3.7E-05 7.9E-10 77.1 14.4 148 274-421 522-690 (840)
173 KOG1129|consensus 98.2 5E-06 1.1E-10 80.3 8.0 118 277-410 257-374 (478)
174 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.7E-06 2.1E-10 82.2 10.2 98 280-393 204-301 (395)
175 PRK10747 putative protoheme IX 98.2 2.9E-05 6.3E-10 79.4 13.9 126 274-420 261-386 (398)
176 PRK11906 transcriptional regul 98.1 4.2E-05 9.2E-10 77.7 13.7 94 288-397 316-409 (458)
177 KOG1127|consensus 98.1 9.3E-06 2E-10 87.8 9.2 140 275-414 491-650 (1238)
178 PF14938 SNAP: Soluble NSF att 98.1 1.8E-05 4E-10 77.0 10.6 137 273-421 32-181 (282)
179 PRK10153 DNA-binding transcrip 98.1 2.7E-05 5.8E-10 82.1 12.5 55 291-362 435-489 (517)
180 PF00515 TPR_1: Tetratricopept 98.1 6.9E-06 1.5E-10 53.0 4.7 33 361-393 2-34 (34)
181 PRK10866 outer membrane biogen 98.1 0.00014 3E-09 69.4 15.4 128 275-415 68-233 (243)
182 KOG1156|consensus 98.1 4.3E-05 9.2E-10 79.6 12.5 120 278-413 43-162 (700)
183 PF14938 SNAP: Soluble NSF att 98.1 4E-05 8.8E-10 74.6 11.9 110 274-393 112-229 (282)
184 KOG4648|consensus 98.0 8.3E-06 1.8E-10 79.2 6.6 87 329-415 100-186 (536)
185 KOG0495|consensus 98.0 6.6E-05 1.4E-09 78.3 13.4 123 279-417 654-776 (913)
186 PF12569 NARP1: NMDA receptor- 98.0 0.00014 2.9E-09 76.6 14.9 90 326-415 194-283 (517)
187 KOG4555|consensus 98.0 0.00018 3.9E-09 61.0 12.7 86 330-415 47-136 (175)
188 KOG1174|consensus 98.0 5.3E-05 1.1E-09 75.3 10.9 133 275-424 333-501 (564)
189 KOG4234|consensus 98.0 6.4E-05 1.4E-09 68.2 10.4 91 330-421 99-194 (271)
190 COG4105 ComL DNA uptake lipopr 98.0 0.00037 8.1E-09 65.8 16.0 125 274-411 32-170 (254)
191 PF12569 NARP1: NMDA receptor- 98.0 0.00021 4.7E-09 75.1 15.9 124 277-416 39-250 (517)
192 PF13428 TPR_14: Tetratricopep 98.0 1.7E-05 3.7E-10 54.6 5.2 41 328-368 3-43 (44)
193 PF13428 TPR_14: Tetratricopep 98.0 1.7E-05 3.7E-10 54.6 5.2 43 360-402 1-43 (44)
194 PF13431 TPR_17: Tetratricopep 98.0 7.6E-06 1.6E-10 53.2 3.2 34 348-381 1-34 (34)
195 COG4700 Uncharacterized protei 98.0 0.00019 4.2E-09 64.5 13.1 122 275-412 88-211 (251)
196 PF07719 TPR_2: Tetratricopept 98.0 2E-05 4.3E-10 50.6 5.1 34 360-393 1-34 (34)
197 PF04733 Coatomer_E: Coatomer 97.9 5.2E-05 1.1E-09 74.2 10.2 111 285-411 140-252 (290)
198 PF00515 TPR_1: Tetratricopept 97.9 1.8E-05 3.9E-10 51.0 4.4 34 326-359 1-34 (34)
199 COG1729 Uncharacterized protei 97.9 0.00015 3.2E-09 69.0 12.3 93 329-422 144-242 (262)
200 PRK14720 transcript cleavage f 97.9 4.5E-05 9.9E-10 84.0 9.7 112 275-389 64-178 (906)
201 KOG1130|consensus 97.9 5.2E-05 1.1E-09 75.3 8.8 133 275-417 194-338 (639)
202 KOG0495|consensus 97.8 0.00019 4.1E-09 75.0 12.6 150 275-425 583-750 (913)
203 KOG1127|consensus 97.8 9.2E-05 2E-09 80.3 10.0 116 275-406 561-676 (1238)
204 PF12968 DUF3856: Domain of Un 97.8 0.00033 7.2E-09 58.3 10.9 108 278-389 11-129 (144)
205 PF03704 BTAD: Bacterial trans 97.8 0.00036 7.9E-09 60.7 11.5 112 278-389 8-125 (146)
206 PF04733 Coatomer_E: Coatomer 97.7 0.00013 2.9E-09 71.3 9.4 94 290-399 181-275 (290)
207 KOG3785|consensus 97.7 0.00027 5.8E-09 69.2 10.9 78 330-407 155-232 (557)
208 KOG4642|consensus 97.7 6.8E-05 1.5E-09 69.7 6.4 91 330-420 14-104 (284)
209 PF07719 TPR_2: Tetratricopept 97.7 8.6E-05 1.9E-09 47.5 5.1 34 326-359 1-34 (34)
210 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00021 4.5E-09 51.3 7.4 49 361-409 2-50 (53)
211 KOG1130|consensus 97.6 0.00048 1E-08 68.6 11.1 124 277-410 236-371 (639)
212 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0029 6.3E-08 55.6 15.1 68 325-392 166-234 (291)
213 KOG3785|consensus 97.6 0.00038 8.3E-09 68.2 9.4 103 285-406 31-133 (557)
214 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00022 4.7E-09 65.6 6.8 96 322-417 61-156 (297)
215 PRK10941 hypothetical protein; 97.5 0.0012 2.5E-08 63.8 12.1 80 326-405 181-260 (269)
216 COG0457 NrfG FOG: TPR repeat [ 97.5 0.0043 9.4E-08 54.5 15.0 124 275-414 94-222 (291)
217 PF13431 TPR_17: Tetratricopep 97.5 0.00011 2.4E-09 47.7 3.2 34 298-347 1-34 (34)
218 PF13181 TPR_8: Tetratricopept 97.5 0.0002 4.4E-09 45.9 4.2 32 361-392 2-33 (34)
219 KOG2376|consensus 97.4 0.0018 3.9E-08 67.2 12.7 118 277-397 13-147 (652)
220 KOG0551|consensus 97.4 0.0011 2.5E-08 64.4 10.4 89 325-413 80-172 (390)
221 KOG1941|consensus 97.4 0.0013 2.9E-08 64.6 10.8 127 277-413 123-265 (518)
222 COG3118 Thioredoxin domain-con 97.4 0.0066 1.4E-07 58.5 15.3 117 277-409 135-287 (304)
223 COG3071 HemY Uncharacterized e 97.4 0.0061 1.3E-07 60.7 15.4 128 271-414 79-207 (400)
224 PF13512 TPR_18: Tetratricopep 97.4 0.0013 2.8E-08 57.1 9.2 84 324-407 8-97 (142)
225 PF15015 NYD-SP12_N: Spermatog 97.4 0.00081 1.8E-08 67.2 8.7 121 269-389 169-291 (569)
226 KOG2376|consensus 97.3 0.0029 6.2E-08 65.8 12.4 117 280-415 83-245 (652)
227 KOG2796|consensus 97.3 0.006 1.3E-07 57.9 13.2 125 276-415 177-307 (366)
228 KOG4151|consensus 97.3 0.00068 1.5E-08 72.5 7.6 127 268-406 45-173 (748)
229 KOG2053|consensus 97.2 0.007 1.5E-07 65.6 14.4 113 286-415 19-131 (932)
230 PF05843 Suf: Suppressor of fo 97.2 0.0067 1.4E-07 59.1 13.3 118 278-411 3-124 (280)
231 PF13181 TPR_8: Tetratricopept 97.2 0.00071 1.5E-08 43.3 4.2 33 327-359 2-34 (34)
232 KOG2796|consensus 97.2 0.0067 1.5E-07 57.5 12.1 120 276-405 212-334 (366)
233 KOG0376|consensus 97.1 0.00049 1.1E-08 69.9 4.8 88 328-415 6-93 (476)
234 KOG4340|consensus 97.1 0.004 8.7E-08 60.0 10.1 125 277-417 45-201 (459)
235 PF06552 TOM20_plant: Plant sp 97.1 0.0036 7.9E-08 56.2 9.1 85 266-366 22-120 (186)
236 KOG3824|consensus 97.0 0.0028 6.2E-08 61.1 8.4 75 331-405 121-195 (472)
237 PLN03218 maturation of RBCL 1; 97.0 0.02 4.3E-07 65.5 16.7 145 276-423 507-677 (1060)
238 PRK04841 transcriptional regul 96.9 0.016 3.4E-07 65.4 14.7 127 279-415 494-633 (903)
239 KOG1941|consensus 96.9 0.013 2.7E-07 58.0 11.8 108 277-390 163-276 (518)
240 KOG4507|consensus 96.9 0.0034 7.4E-08 65.1 8.2 108 282-405 613-721 (886)
241 PF13174 TPR_6: Tetratricopept 96.9 0.0017 3.6E-08 41.0 4.0 33 361-393 1-33 (33)
242 KOG3364|consensus 96.9 0.021 4.6E-07 48.9 11.5 88 323-410 29-121 (149)
243 KOG3081|consensus 96.8 0.027 5.8E-07 53.6 13.0 88 327-414 170-261 (299)
244 PF14853 Fis1_TPR_C: Fis1 C-te 96.8 0.0053 1.1E-07 44.0 6.5 43 327-369 2-44 (53)
245 PLN03081 pentatricopeptide (PP 96.8 0.012 2.6E-07 64.6 12.6 95 326-423 462-556 (697)
246 KOG1586|consensus 96.8 0.026 5.7E-07 52.7 12.6 125 275-409 112-246 (288)
247 KOG1586|consensus 96.8 0.047 1E-06 51.1 14.1 132 273-415 31-175 (288)
248 KOG4814|consensus 96.8 0.0097 2.1E-07 62.4 10.5 103 278-390 356-458 (872)
249 PLN03077 Protein ECB2; Provisi 96.8 0.027 5.9E-07 63.3 15.2 120 285-421 598-717 (857)
250 PLN03218 maturation of RBCL 1; 96.7 0.038 8.3E-07 63.2 16.1 94 327-422 650-746 (1060)
251 KOG1915|consensus 96.7 0.041 8.8E-07 56.2 14.4 130 275-422 72-201 (677)
252 KOG1308|consensus 96.7 0.0005 1.1E-08 67.1 0.9 80 337-416 125-204 (377)
253 KOG0545|consensus 96.7 0.012 2.6E-07 55.3 9.7 92 325-416 177-286 (329)
254 PF03704 BTAD: Bacterial trans 96.7 0.05 1.1E-06 47.1 13.3 87 329-415 9-117 (146)
255 KOG1585|consensus 96.7 0.026 5.7E-07 53.1 11.8 173 197-390 41-220 (308)
256 PF04184 ST7: ST7 protein; In 96.7 0.018 3.8E-07 59.2 11.6 57 330-386 263-321 (539)
257 PLN03081 pentatricopeptide (PP 96.6 0.012 2.6E-07 64.6 11.1 142 276-422 290-453 (697)
258 PF10300 DUF3808: Protein of u 96.6 0.0099 2.1E-07 62.2 9.4 104 275-390 266-377 (468)
259 COG2976 Uncharacterized protei 96.6 0.028 6E-07 51.2 10.9 105 275-394 88-193 (207)
260 KOG2471|consensus 96.5 0.0046 1E-07 63.0 6.1 124 275-407 239-382 (696)
261 KOG4340|consensus 96.5 0.032 6.9E-07 53.9 11.4 84 287-386 21-104 (459)
262 smart00028 TPR Tetratricopepti 96.5 0.0036 7.7E-08 37.9 3.5 31 362-392 3-33 (34)
263 PRK04841 transcriptional regul 96.5 0.038 8.2E-07 62.3 13.8 127 278-415 454-594 (903)
264 smart00028 TPR Tetratricopepti 96.3 0.0059 1.3E-07 36.8 3.8 33 327-359 2-34 (34)
265 COG3071 HemY Uncharacterized e 96.3 0.057 1.2E-06 54.0 12.4 119 276-414 263-381 (400)
266 PF04184 ST7: ST7 protein; In 96.3 0.14 3E-06 52.9 15.3 57 360-416 259-317 (539)
267 PF13176 TPR_7: Tetratricopept 96.3 0.007 1.5E-07 39.5 4.2 27 362-388 1-27 (36)
268 PF09986 DUF2225: Uncharacteri 96.3 0.081 1.8E-06 49.4 12.9 98 285-391 86-196 (214)
269 KOG3824|consensus 96.3 0.017 3.7E-07 55.9 8.3 110 275-400 115-229 (472)
270 PF13174 TPR_6: Tetratricopept 96.3 0.0079 1.7E-07 37.8 4.2 33 327-359 1-33 (33)
271 PF13176 TPR_7: Tetratricopept 96.3 0.008 1.7E-07 39.3 4.3 29 328-356 1-29 (36)
272 COG4976 Predicted methyltransf 96.3 0.0055 1.2E-07 56.9 4.6 62 334-395 3-64 (287)
273 KOG1915|consensus 96.3 0.053 1.2E-06 55.4 11.9 90 334-423 445-535 (677)
274 COG4105 ComL DNA uptake lipopr 96.3 0.031 6.7E-07 53.0 9.7 75 322-396 30-107 (254)
275 KOG2471|consensus 96.2 0.013 2.7E-07 60.0 7.3 99 275-373 282-382 (696)
276 KOG2396|consensus 96.2 0.12 2.5E-06 53.3 14.0 96 295-406 90-186 (568)
277 PF14561 TPR_20: Tetratricopep 96.2 0.044 9.4E-07 43.9 8.8 67 345-411 7-75 (90)
278 COG2912 Uncharacterized conser 96.1 0.052 1.1E-06 52.0 10.2 82 325-406 180-261 (269)
279 KOG3081|consensus 96.1 0.085 1.8E-06 50.3 11.4 104 275-397 175-279 (299)
280 KOG1070|consensus 96.0 0.17 3.8E-06 57.7 15.1 126 279-421 1533-1660(1710)
281 KOG1585|consensus 96.0 0.29 6.4E-06 46.2 14.3 133 275-417 30-173 (308)
282 PF04781 DUF627: Protein of un 95.9 0.038 8.2E-07 45.7 7.6 95 282-389 2-107 (111)
283 KOG2610|consensus 95.9 0.12 2.5E-06 50.9 11.7 107 279-385 106-234 (491)
284 PF10300 DUF3808: Protein of u 95.9 0.13 2.7E-06 54.0 13.0 106 289-410 246-356 (468)
285 PRK10941 hypothetical protein; 95.8 0.069 1.5E-06 51.6 9.9 80 276-371 181-260 (269)
286 KOG1070|consensus 95.8 0.14 3E-06 58.4 13.2 173 220-412 1438-1618(1710)
287 COG4700 Uncharacterized protei 95.7 0.18 4E-06 45.7 11.5 89 327-415 90-181 (251)
288 KOG4814|consensus 95.5 0.074 1.6E-06 56.1 9.5 88 327-414 355-448 (872)
289 PLN03077 Protein ECB2; Provisi 95.3 0.23 5E-06 55.9 13.6 97 323-421 551-651 (857)
290 KOG0530|consensus 95.3 0.4 8.6E-06 45.8 12.8 110 288-413 55-166 (318)
291 PF08631 SPO22: Meiosis protei 95.2 0.49 1.1E-05 45.9 13.8 123 267-391 26-152 (278)
292 PF05843 Suf: Suppressor of fo 95.2 0.21 4.6E-06 48.5 11.1 96 328-424 3-99 (280)
293 PF10602 RPN7: 26S proteasome 95.1 0.17 3.7E-06 45.8 9.5 103 275-390 35-143 (177)
294 COG4976 Predicted methyltransf 94.8 0.048 1E-06 50.9 5.1 61 283-359 2-62 (287)
295 KOG4507|consensus 94.6 0.13 2.9E-06 53.8 8.1 131 278-422 214-348 (886)
296 COG2976 Uncharacterized protei 94.6 1.6 3.6E-05 39.9 14.2 166 251-422 9-186 (207)
297 PF10579 Rapsyn_N: Rapsyn N-te 94.5 0.15 3.2E-06 39.6 6.4 68 275-355 5-72 (80)
298 PF09986 DUF2225: Uncharacteri 94.5 0.3 6.4E-06 45.7 9.8 92 269-370 118-210 (214)
299 PF12862 Apc5: Anaphase-promot 94.3 0.2 4.4E-06 40.2 7.2 64 286-356 8-71 (94)
300 PF13374 TPR_10: Tetratricopep 94.3 0.1 2.2E-06 34.3 4.6 29 327-355 3-31 (42)
301 PF04910 Tcf25: Transcriptiona 94.1 1.2 2.6E-05 45.0 13.9 108 288-399 6-143 (360)
302 PF14561 TPR_20: Tetratricopep 94.0 0.72 1.6E-05 36.8 9.6 38 322-359 18-55 (90)
303 PF07079 DUF1347: Protein of u 93.9 1.5 3.4E-05 44.9 13.9 72 333-408 469-544 (549)
304 PF02259 FAT: FAT domain; Int 93.9 0.97 2.1E-05 44.6 12.8 127 274-412 144-310 (352)
305 PF09613 HrpB1_HrpK: Bacterial 93.9 3.2 6.8E-05 36.9 14.3 113 276-406 10-122 (160)
306 COG5191 Uncharacterized conser 93.8 0.15 3.2E-06 49.7 6.3 82 322-403 103-185 (435)
307 PF09613 HrpB1_HrpK: Bacterial 93.7 1.1 2.3E-05 39.8 10.9 86 325-410 9-94 (160)
308 PF08631 SPO22: Meiosis protei 93.4 2.4 5.1E-05 41.1 14.3 119 286-412 3-139 (278)
309 PF13374 TPR_10: Tetratricopep 93.4 0.19 4.1E-06 33.0 4.6 30 360-389 2-31 (42)
310 KOG1310|consensus 93.4 0.25 5.5E-06 51.2 7.4 89 326-414 374-465 (758)
311 PF12862 Apc5: Anaphase-promot 93.4 0.92 2E-05 36.3 9.5 57 335-391 7-72 (94)
312 PF02259 FAT: FAT domain; Int 93.4 0.61 1.3E-05 46.1 10.3 118 275-392 183-341 (352)
313 KOG2610|consensus 93.1 0.46 1E-05 46.8 8.4 97 285-397 184-286 (491)
314 KOG2300|consensus 93.0 2.3 4.9E-05 44.0 13.4 132 264-414 355-505 (629)
315 COG3914 Spy Predicted O-linked 92.6 1.6 3.6E-05 46.0 12.0 106 282-403 73-185 (620)
316 KOG3617|consensus 92.5 2 4.4E-05 47.0 12.8 90 326-415 858-988 (1416)
317 KOG0882|consensus 92.4 0.069 1.5E-06 54.0 1.8 55 26-90 113-167 (558)
318 COG3629 DnrI DNA-binding trans 92.3 0.85 1.8E-05 44.3 9.1 68 322-389 149-216 (280)
319 KOG2053|consensus 92.3 1.1 2.5E-05 49.2 10.9 110 279-405 46-155 (932)
320 COG0790 FOG: TPR repeat, SEL1 92.2 3.2 6.9E-05 40.1 13.3 107 277-403 110-232 (292)
321 PF04781 DUF627: Protein of un 92.2 1.9 4.2E-05 35.7 9.8 88 332-419 2-103 (111)
322 PF07720 TPR_3: Tetratricopept 92.1 0.48 1E-05 31.0 5.0 33 361-393 2-36 (36)
323 KOG3617|consensus 91.9 1.9 4E-05 47.3 11.8 114 276-389 858-996 (1416)
324 PRK13184 pknD serine/threonine 91.9 1.3 2.8E-05 50.1 11.2 122 279-414 478-606 (932)
325 PF08424 NRDE-2: NRDE-2, neces 91.9 6.5 0.00014 39.0 15.2 84 322-405 15-110 (321)
326 PF10516 SHNi-TPR: SHNi-TPR; 91.8 0.26 5.7E-06 32.7 3.5 29 361-389 2-30 (38)
327 COG3118 Thioredoxin domain-con 91.7 2.9 6.3E-05 40.7 11.9 91 329-419 137-261 (304)
328 PF13281 DUF4071: Domain of un 91.6 4 8.6E-05 41.3 13.3 109 279-402 182-347 (374)
329 COG2912 Uncharacterized conser 91.6 0.72 1.6E-05 44.3 7.6 79 276-370 181-259 (269)
330 KOG0529|consensus 91.1 2.8 6.1E-05 42.5 11.5 101 291-407 90-196 (421)
331 KOG1550|consensus 90.9 2.2 4.9E-05 45.6 11.5 105 279-405 291-407 (552)
332 KOG3364|consensus 90.7 0.68 1.5E-05 39.8 5.9 46 323-368 68-113 (149)
333 PF10952 DUF2753: Protein of u 90.7 1.2 2.5E-05 37.7 7.1 80 279-359 4-87 (140)
334 cd02682 MIT_AAA_Arch MIT: doma 90.6 0.63 1.4E-05 35.8 5.1 37 274-310 4-40 (75)
335 KOG2047|consensus 90.5 5.6 0.00012 42.6 13.4 30 276-305 387-416 (835)
336 PF10602 RPN7: 26S proteasome 90.2 6.7 0.00015 35.4 12.4 98 323-420 33-139 (177)
337 COG3914 Spy Predicted O-linked 89.9 2.7 5.8E-05 44.5 10.5 97 322-418 61-166 (620)
338 KOG1550|consensus 89.8 2.9 6.2E-05 44.8 11.2 116 276-406 244-372 (552)
339 KOG2047|consensus 89.7 6 0.00013 42.4 12.9 151 272-423 421-578 (835)
340 PF10516 SHNi-TPR: SHNi-TPR; 89.7 0.56 1.2E-05 31.1 3.6 30 327-356 2-31 (38)
341 COG3947 Response regulator con 89.6 1.2 2.5E-05 43.3 7.0 66 322-387 275-340 (361)
342 KOG0529|consensus 89.5 6.5 0.00014 39.9 12.5 89 322-410 59-161 (421)
343 PF15015 NYD-SP12_N: Spermatog 89.5 2.4 5.3E-05 43.1 9.5 55 364-418 232-286 (569)
344 PF10373 EST1_DNA_bind: Est1 D 89.5 1.2 2.6E-05 42.5 7.4 62 345-406 1-62 (278)
345 TIGR02561 HrpB1_HrpK type III 88.4 5.3 0.00011 35.0 9.7 74 335-408 19-92 (153)
346 PF07720 TPR_3: Tetratricopept 88.1 1.7 3.6E-05 28.5 5.0 33 327-359 2-36 (36)
347 PRK15180 Vi polysaccharide bio 87.9 5.6 0.00012 41.3 10.9 98 286-399 299-396 (831)
348 PF04910 Tcf25: Transcriptiona 87.6 15 0.00033 37.1 14.1 136 275-410 39-194 (360)
349 COG0790 FOG: TPR repeat, SEL1 87.6 8.9 0.00019 36.9 12.2 100 287-406 88-199 (292)
350 PF13281 DUF4071: Domain of un 87.5 9.9 0.00021 38.5 12.5 86 324-409 139-232 (374)
351 KOG1839|consensus 87.4 2.9 6.4E-05 47.9 9.5 131 275-414 931-1077(1236)
352 PF10255 Paf67: RNA polymerase 87.3 0.89 1.9E-05 46.4 5.0 59 329-388 125-192 (404)
353 PF10373 EST1_DNA_bind: Est1 D 87.1 2.3 5E-05 40.6 7.7 62 295-372 1-62 (278)
354 PF14863 Alkyl_sulf_dimr: Alky 87.0 2.6 5.6E-05 36.7 7.1 50 361-410 71-120 (141)
355 PF07721 TPR_4: Tetratricopept 85.8 0.97 2.1E-05 27.0 2.7 23 362-384 3-25 (26)
356 KOG2422|consensus 85.6 13 0.00029 39.4 12.4 123 280-406 239-389 (665)
357 COG3898 Uncharacterized membra 85.6 13 0.00028 37.7 11.9 109 277-394 189-297 (531)
358 KOG0686|consensus 85.0 3.4 7.3E-05 41.9 7.6 111 277-400 151-277 (466)
359 TIGR03504 FimV_Cterm FimV C-te 84.9 3.5 7.5E-05 28.3 5.4 25 364-388 3-27 (44)
360 PF12968 DUF3856: Domain of Un 84.8 5.1 0.00011 33.9 7.3 75 276-355 55-129 (144)
361 PF10255 Paf67: RNA polymerase 84.6 3.9 8.4E-05 41.9 8.0 137 279-423 125-265 (404)
362 PF04212 MIT: MIT (microtubule 84.3 2.4 5.3E-05 31.7 5.0 36 274-309 3-38 (69)
363 PF11817 Foie-gras_1: Foie gra 84.3 12 0.00025 35.7 10.8 84 291-384 153-242 (247)
364 cd02683 MIT_1 MIT: domain cont 84.0 2.6 5.6E-05 32.6 5.1 34 275-308 5-38 (77)
365 PF10345 Cohesin_load: Cohesin 84.0 17 0.00037 39.4 13.3 120 275-394 300-446 (608)
366 PF11207 DUF2989: Protein of u 83.8 30 0.00066 31.9 12.7 55 358-413 139-197 (203)
367 PF07079 DUF1347: Protein of u 83.4 6.4 0.00014 40.6 8.8 58 276-350 462-519 (549)
368 KOG0530|consensus 83.2 9.2 0.0002 36.8 9.2 85 322-406 143-233 (318)
369 COG4455 ImpE Protein of avirul 83.0 12 0.00027 35.0 9.7 65 333-397 8-72 (273)
370 KOG1497|consensus 82.8 21 0.00046 35.2 11.7 96 324-420 101-206 (399)
371 PF06957 COPI_C: Coatomer (COP 82.4 7.7 0.00017 39.9 9.1 121 274-398 202-338 (422)
372 COG2909 MalT ATP-dependent tra 81.5 33 0.00071 38.3 13.8 108 275-389 414-526 (894)
373 COG3898 Uncharacterized membra 81.0 28 0.00061 35.4 12.1 94 278-389 122-217 (531)
374 PF07721 TPR_4: Tetratricopept 80.4 2.2 4.8E-05 25.4 2.8 24 327-350 2-25 (26)
375 TIGR02561 HrpB1_HrpK type III 80.3 40 0.00087 29.6 12.5 57 322-378 40-96 (153)
376 PRK00969 hypothetical protein; 80.2 3.5 7.6E-05 42.8 5.8 23 25-47 378-400 (508)
377 PF14863 Alkyl_sulf_dimr: Alky 79.8 5.7 0.00012 34.5 6.2 53 326-378 70-122 (141)
378 KOG2581|consensus 79.3 21 0.00045 36.4 10.6 71 324-394 207-281 (493)
379 PF10345 Cohesin_load: Cohesin 78.5 29 0.00062 37.7 12.6 116 274-400 57-181 (608)
380 PF10579 Rapsyn_N: Rapsyn N-te 78.4 24 0.00053 27.5 8.5 57 328-384 8-67 (80)
381 KOG1839|consensus 77.8 11 0.00024 43.5 9.2 109 274-390 971-1087(1236)
382 PF11817 Foie-gras_1: Foie gra 77.7 8.4 0.00018 36.6 7.3 69 275-353 177-245 (247)
383 PRK13184 pknD serine/threonine 77.6 17 0.00036 41.4 10.5 75 322-398 548-629 (932)
384 COG5191 Uncharacterized conser 77.6 2.8 6E-05 41.1 3.9 75 275-365 106-181 (435)
385 KOG2561|consensus 77.3 20 0.00043 36.9 9.9 111 273-388 160-295 (568)
386 KOG2300|consensus 77.2 18 0.00039 37.7 9.6 101 275-384 45-151 (629)
387 PF11207 DUF2989: Protein of u 77.1 11 0.00023 34.8 7.4 56 324-380 139-198 (203)
388 PF08424 NRDE-2: NRDE-2, neces 77.1 62 0.0014 32.0 13.6 85 289-389 44-131 (321)
389 cd02678 MIT_VPS4 MIT: domain c 76.8 7.6 0.00017 29.7 5.5 35 274-308 4-38 (75)
390 TIGR03504 FimV_Cterm FimV C-te 76.7 4.5 9.8E-05 27.7 3.7 25 330-354 3-27 (44)
391 KOG1258|consensus 76.0 59 0.0013 34.7 13.3 122 276-413 297-419 (577)
392 COG3629 DnrI DNA-binding trans 75.6 12 0.00025 36.5 7.6 58 358-415 151-208 (280)
393 cd02656 MIT MIT: domain contai 75.5 9.2 0.0002 29.1 5.7 36 274-309 4-39 (75)
394 KOG2114|consensus 75.4 21 0.00045 39.6 10.0 32 275-306 367-398 (933)
395 cd02682 MIT_AAA_Arch MIT: doma 75.2 12 0.00026 28.8 6.1 27 326-352 6-32 (75)
396 KOG2396|consensus 74.7 12 0.00025 39.2 7.6 72 277-364 106-178 (568)
397 PHA02537 M terminase endonucle 74.3 4.6 0.0001 38.1 4.4 119 284-408 91-225 (230)
398 smart00745 MIT Microtubule Int 74.2 10 0.00023 28.8 5.7 35 274-308 6-40 (77)
399 KOG0546|consensus 73.8 1.8 3.9E-05 43.0 1.6 80 278-373 277-356 (372)
400 KOG4014|consensus 73.3 75 0.0016 29.1 11.6 109 276-406 68-212 (248)
401 PF11846 DUF3366: Domain of un 72.8 20 0.00044 32.4 8.3 51 342-393 127-177 (193)
402 TIGR03268 methan_mark_3 putati 72.3 7.9 0.00017 40.3 5.8 23 25-47 375-397 (503)
403 COG4941 Predicted RNA polymera 71.8 26 0.00056 34.9 8.9 78 326-403 329-408 (415)
404 smart00386 HAT HAT (Half-A-TPR 71.3 12 0.00026 22.4 4.5 28 375-402 2-29 (33)
405 PF09670 Cas_Cas02710: CRISPR- 69.9 54 0.0012 33.4 11.3 65 276-354 131-197 (379)
406 KOG4014|consensus 68.6 68 0.0015 29.4 10.2 78 322-403 64-153 (248)
407 PF04053 Coatomer_WDAD: Coatom 68.1 57 0.0012 34.0 11.2 47 337-388 329-375 (443)
408 cd02684 MIT_2 MIT: domain cont 67.9 17 0.00038 27.8 5.6 35 274-308 4-38 (75)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 67.8 28 0.0006 29.5 7.4 79 296-387 46-126 (126)
410 COG3947 Response regulator con 67.7 14 0.00031 36.0 6.1 54 360-413 279-332 (361)
411 KOG3807|consensus 67.6 85 0.0018 31.4 11.4 50 364-413 279-330 (556)
412 cd02681 MIT_calpain7_1 MIT: do 67.5 7.2 0.00016 30.1 3.4 34 274-307 4-37 (76)
413 cd09241 BRO1_ScRim20-like Prot 67.2 92 0.002 31.3 12.3 100 290-389 129-266 (355)
414 cd09239 BRO1_HD-PTP_like Prote 67.2 1.4E+02 0.0031 30.1 13.7 115 274-388 112-280 (361)
415 KOG2041|consensus 67.0 19 0.00042 39.1 7.4 75 275-349 795-875 (1189)
416 COG5091 SGT1 Suppressor of G2 66.0 12 0.00027 35.9 5.2 93 285-393 4-112 (368)
417 cd02677 MIT_SNX15 MIT: domain 65.9 40 0.00088 25.8 7.3 34 275-308 5-38 (75)
418 PF04190 DUF410: Protein of un 65.3 55 0.0012 31.4 9.8 99 274-383 8-113 (260)
419 PRK15180 Vi polysaccharide bio 64.9 10 0.00023 39.3 4.9 63 332-394 363-425 (831)
420 KOG3783|consensus 64.9 60 0.0013 34.3 10.4 69 326-394 449-525 (546)
421 PF09205 DUF1955: Domain of un 64.5 55 0.0012 28.4 8.4 130 239-389 11-149 (161)
422 cd09034 BRO1_Alix_like Protein 64.0 86 0.0019 31.1 11.4 100 290-389 135-280 (345)
423 COG4649 Uncharacterized protei 63.9 1.2E+02 0.0025 27.7 11.7 32 325-356 93-124 (221)
424 KOG2422|consensus 63.1 2E+02 0.0043 31.0 13.7 92 275-366 283-383 (665)
425 cd09240 BRO1_Alix Protein-inte 63.1 1.4E+02 0.0031 29.9 12.7 97 292-388 144-283 (346)
426 KOG1463|consensus 62.9 42 0.00091 33.6 8.4 118 275-405 208-329 (411)
427 COG2015 Alkyl sulfatase and re 62.8 42 0.00091 35.1 8.7 61 360-422 452-512 (655)
428 TIGR03268 methan_mark_3 putati 62.2 17 0.00037 37.8 5.9 24 25-49 201-224 (503)
429 PF00244 14-3-3: 14-3-3 protei 62.1 27 0.00058 33.0 6.9 56 291-354 141-197 (236)
430 cd02680 MIT_calpain7_2 MIT: do 61.9 12 0.00025 28.9 3.6 34 274-307 4-37 (75)
431 PF03097 BRO1: BRO1-like domai 61.5 90 0.002 31.4 11.2 101 289-389 129-268 (377)
432 smart00386 HAT HAT (Half-A-TPR 61.2 21 0.00046 21.2 4.3 30 340-369 1-30 (33)
433 KOG0890|consensus 61.0 2E+02 0.0043 36.1 14.8 68 321-390 1665-1732(2382)
434 PRK00969 hypothetical protein; 59.6 19 0.00042 37.6 5.8 24 25-49 204-227 (508)
435 PF12903 DUF3830: Protein of u 59.4 11 0.00024 32.9 3.5 44 25-81 8-53 (147)
436 smart00745 MIT Microtubule Int 58.5 41 0.00088 25.5 6.2 15 373-387 21-35 (77)
437 cd09243 BRO1_Brox_like Protein 58.3 1.3E+02 0.0028 30.4 11.4 99 291-389 136-277 (353)
438 KOG1464|consensus 57.7 37 0.00079 33.0 6.8 106 280-389 149-260 (440)
439 KOG1258|consensus 57.5 1.1E+02 0.0025 32.7 11.0 126 289-423 268-394 (577)
440 PF01239 PPTA: Protein prenylt 57.5 31 0.00067 21.2 4.4 26 346-371 3-28 (31)
441 cd02683 MIT_1 MIT: domain cont 56.8 66 0.0014 24.8 7.1 17 379-395 32-48 (77)
442 COG2909 MalT ATP-dependent tra 56.6 1.1E+02 0.0023 34.4 11.0 90 275-375 457-552 (894)
443 KOG4459|consensus 56.0 28 0.0006 35.9 6.1 125 276-410 31-183 (471)
444 COG4649 Uncharacterized protei 55.6 68 0.0015 29.2 7.8 112 277-403 95-209 (221)
445 KOG3616|consensus 55.5 48 0.001 36.5 7.9 22 282-303 712-733 (1636)
446 PF04053 Coatomer_WDAD: Coatom 55.5 51 0.0011 34.4 8.2 29 324-352 345-373 (443)
447 cd02679 MIT_spastin MIT: domai 54.0 24 0.00051 27.5 4.1 34 341-389 4-37 (79)
448 cd09244 BRO1_Rhophilin Protein 53.8 1.8E+02 0.0039 29.3 11.5 115 274-388 104-272 (350)
449 TIGR02710 CRISPR-associated pr 53.0 1.1E+02 0.0025 31.1 10.0 61 279-350 133-195 (380)
450 KOG0985|consensus 52.9 2.2E+02 0.0048 32.9 12.5 61 324-389 1102-1162(1666)
451 PF08626 TRAPPC9-Trs120: Trans 52.9 1.5E+02 0.0033 35.0 12.4 140 274-413 240-464 (1185)
452 KOG1914|consensus 52.1 63 0.0014 34.3 8.0 69 319-388 13-81 (656)
453 KOG1914|consensus 51.8 73 0.0016 33.9 8.4 65 350-415 10-74 (656)
454 cd02680 MIT_calpain7_2 MIT: do 51.7 25 0.00055 27.0 3.9 17 373-389 19-35 (75)
455 KOG3616|consensus 51.1 68 0.0015 35.4 8.2 25 277-301 662-686 (1636)
456 COG1747 Uncharacterized N-term 51.0 3E+02 0.0065 29.3 12.5 98 323-422 63-162 (711)
457 COG1747 Uncharacterized N-term 50.4 3.4E+02 0.0074 29.0 12.8 58 336-393 215-292 (711)
458 COG4070 Predicted peptidyl-pro 50.1 31 0.00068 34.9 5.2 24 25-49 203-226 (512)
459 KOG1464|consensus 48.9 48 0.001 32.2 6.1 51 338-388 39-93 (440)
460 KOG4563|consensus 47.4 46 0.001 33.5 5.9 69 271-347 36-104 (400)
461 PF09797 NatB_MDM20: N-acetylt 47.0 1.7E+02 0.0037 29.3 10.4 48 339-386 196-243 (365)
462 KOG2041|consensus 46.9 1.6E+02 0.0035 32.4 10.2 60 324-383 794-875 (1189)
463 PF12854 PPR_1: PPR repeat 46.5 43 0.00094 21.1 3.9 27 325-351 6-32 (34)
464 PF12739 TRAPPC-Trs85: ER-Golg 45.5 2.3E+02 0.0049 29.1 11.1 118 277-404 209-351 (414)
465 PF01239 PPTA: Protein prenylt 45.2 71 0.0015 19.5 4.7 29 379-407 2-30 (31)
466 cd09246 BRO1_Alix_like_1 Prote 43.7 3.5E+02 0.0076 27.1 12.1 98 291-388 135-275 (353)
467 PF09670 Cas_Cas02710: CRISPR- 43.4 2.5E+02 0.0055 28.5 11.0 63 327-389 132-198 (379)
468 COG4455 ImpE Protein of avirul 43.2 3E+02 0.0064 26.1 11.9 92 285-392 10-118 (273)
469 KOG0292|consensus 42.9 1E+02 0.0023 34.7 8.2 131 273-404 988-1128(1202)
470 COG4070 Predicted peptidyl-pro 42.7 18 0.00039 36.5 2.4 22 26-47 377-398 (512)
471 cd02656 MIT MIT: domain contai 42.3 77 0.0017 23.8 5.5 14 374-387 20-33 (75)
472 PF08238 Sel1: Sel1 repeat; I 42.1 56 0.0012 20.5 4.1 29 361-389 2-37 (39)
473 PF15469 Sec5: Exocyst complex 42.1 1.8E+02 0.0039 25.9 8.8 23 286-308 96-118 (182)
474 cd02679 MIT_spastin MIT: domai 42.0 39 0.00084 26.3 3.7 34 274-307 6-39 (79)
475 PF10952 DUF2753: Protein of u 41.8 1.4E+02 0.003 25.6 7.1 79 329-407 4-106 (140)
476 cd09242 BRO1_ScBro1_like Prote 41.3 3.7E+02 0.0081 26.9 11.7 101 289-389 129-273 (348)
477 PF04190 DUF410: Protein of un 41.3 3.3E+02 0.0071 26.1 16.2 67 323-389 87-170 (260)
478 smart00671 SEL1 Sel1-like repe 40.9 53 0.0012 20.1 3.7 27 362-388 3-33 (36)
479 PF02064 MAS20: MAS20 protein 40.8 78 0.0017 26.8 5.6 38 364-401 67-104 (121)
480 cd02681 MIT_calpain7_1 MIT: do 40.7 60 0.0013 25.0 4.6 22 332-353 12-33 (76)
481 smart00101 14_3_3 14-3-3 homol 40.1 97 0.0021 29.5 6.8 55 292-354 144-199 (244)
482 PF04212 MIT: MIT (microtubule 40.1 1.5E+02 0.0032 21.8 8.7 17 372-388 17-33 (69)
483 PF07219 HemY_N: HemY protein 39.8 84 0.0018 25.6 5.7 55 271-341 54-108 (108)
484 cd09248 BRO1_Rhophilin_1 Prote 39.6 4.1E+02 0.0089 27.2 11.5 64 273-336 103-175 (384)
485 KOG0985|consensus 39.6 2.6E+02 0.0057 32.3 10.6 106 279-408 1197-1327(1666)
486 KOG1497|consensus 39.3 4.1E+02 0.0088 26.6 13.4 105 274-387 101-211 (399)
487 cd02678 MIT_VPS4 MIT: domain c 38.6 1.1E+02 0.0023 23.2 5.7 15 373-387 19-33 (75)
488 COG5107 RNA14 Pre-mRNA 3'-end 38.2 92 0.002 32.5 6.6 72 298-388 290-361 (660)
489 KOG0276|consensus 37.6 1.9E+02 0.0042 31.3 8.9 70 334-408 645-722 (794)
490 COG2178 Predicted RNA-binding 37.4 3.3E+02 0.0071 25.1 9.4 108 269-386 22-147 (204)
491 PRK15326 type III secretion sy 37.1 2E+02 0.0044 22.4 7.2 41 374-414 21-61 (80)
492 KOG0739|consensus 36.1 1.3E+02 0.0027 29.9 6.8 31 275-305 9-39 (439)
493 COG5536 BET4 Protein prenyltra 35.7 64 0.0014 31.4 4.8 85 322-406 140-239 (328)
494 PRK11619 lytic murein transgly 35.0 1.9E+02 0.0041 31.7 9.0 64 325-388 311-374 (644)
495 PF11846 DUF3366: Domain of un 34.9 1.6E+02 0.0035 26.4 7.3 33 325-357 143-175 (193)
496 PF01535 PPR: PPR repeat; Int 34.1 65 0.0014 18.8 3.2 25 329-353 3-27 (31)
497 KOG0890|consensus 34.0 3.1E+02 0.0067 34.5 10.9 110 274-401 1668-1796(2382)
498 PF05053 Menin: Menin; InterP 34.0 4.9E+02 0.011 28.0 11.2 50 356-405 314-369 (618)
499 smart00777 Mad3_BUB1_I Mad3/BU 33.8 2.2E+02 0.0047 24.2 7.3 58 322-385 65-124 (125)
500 KOG3807|consensus 33.8 5.1E+02 0.011 26.1 12.4 90 291-380 231-331 (556)
No 1
>KOG0546|consensus
Probab=100.00 E-value=4.4e-65 Score=485.93 Aligned_cols=316 Identities=42% Similarity=0.606 Sum_probs=285.3
Q ss_pred CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCC-CCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGK-GKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG 86 (426)
Q Consensus 8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~-~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (426)
..||+|||||+|++.+.||||||||.|+||+||+||++||+|+.|. ...++..+|.|+.||||||+|||||||++.++|
T Consensus 6 ~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG 85 (372)
T KOG0546|consen 6 RTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG 85 (372)
T ss_pred CCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence 3799999999999999999999999999999999999999999995 377899999999999999999999999999999
Q ss_pred CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102 87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~ 166 (426)
+||+||||..|+||+|.++|++ ||+ |||||. | |+ +||||||||+.
T Consensus 86 tGGeSIYG~~FdDEnF~lKHdr-----pfl--------------LSMAN~---G-------pN--TNgSQFFITT~---- 130 (372)
T KOG0546|consen 86 TGGESIYGEKFDDENFELKHDR-----PFL--------------LSMANR---G-------PN--TNGSQFFITTV---- 130 (372)
T ss_pred CCcccccccccccccceeccCc-----chh--------------hhhhcC---C-------CC--CCCcceEEeCC----
Confidence 9999999999999999999999 999 999999 9 99 99999999999
Q ss_pred ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102 167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV 246 (426)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V 246 (426)
++| |||| .|+|||+|
T Consensus 131 ---p~P-HLdG-------------------------------------------------------------kHVVFGqV 145 (372)
T KOG0546|consen 131 ---PTP-HLDG-------------------------------------------------------------KHVVFGQV 145 (372)
T ss_pred ---CCC-CcCC-------------------------------------------------------------ceeEEeeE
Confidence 999 9999 99999999
Q ss_pred hccccHHHHHhhchhhC-Ccccccchh----------------------------------------------hhHHHHH
Q psy6102 247 RQGFGVAREVSYVEAEN-DKPLVLNQM----------------------------------------------EDVIRTI 279 (426)
Q Consensus 247 ieGldvl~~I~~l~~~~-~~P~~~i~i----------------------------------------------lk~a~~~ 279 (426)
+.|+++++.|+.+.++. +.|...+.| ...+...
T Consensus 146 I~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~ 225 (372)
T KOG0546|consen 146 IKGKEVVREIENLETDEESKPLADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKK 225 (372)
T ss_pred eechhHHHHHhccccccCCCCccceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhh
Confidence 99999999999988843 345531111 1234567
Q ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhh---hhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ---QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~---~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
++.|+..|++++|..|...|.++++++.........+. ...+......++.+++.|-++++.+..|+..+..+++.+
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~ 305 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDE 305 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccC
Confidence 78999999999999999999999998765222211111 234566777899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 423 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~ 423 (426)
++..+++|++++++..+.++++|+++++.|....|++.++...+..+.....++.+.++..+.+||.
T Consensus 306 ~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 306 RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 2
>KOG0880|consensus
Probab=100.00 E-value=1.2e-45 Score=324.22 Aligned_cols=161 Identities=50% Similarity=0.775 Sum_probs=151.9
Q ss_pred CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhh-CCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCT-GEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG 86 (426)
Q Consensus 8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~-~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (426)
+-..+||||+.+++++.|||||.||...+||||+||.+||+ ++.+.| |.|+.||||||+|||||||.+.++|
T Consensus 37 ~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~g 109 (217)
T KOG0880|consen 37 KVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDG 109 (217)
T ss_pred cceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCC
Confidence 34579999999999999999999999999999999999999 777777 9999999999999999999999999
Q ss_pred CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102 87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~ 166 (426)
+||.|+||++|+||++.++|++ ||. ||||+. | |+ +|||||||||.
T Consensus 110 tGg~SIyG~~F~DENf~LkH~r-----pG~--------------lSMAn~---G-------pD--tNGsQFfItT~---- 154 (217)
T KOG0880|consen 110 TGGKSIYGEKFPDENFKLKHDR-----PGR--------------LSMANA---G-------PD--TNGSQFFITTV---- 154 (217)
T ss_pred CCCeEeecCCCCCccceeecCC-----Cce--------------Eeeecc---C-------CC--CCCceEEEEec----
Confidence 9999999999999999999999 999 999999 9 99 99999999999
Q ss_pred ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102 167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV 246 (426)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V 246 (426)
.++ |||| +|++||+|
T Consensus 155 ---~t~-wLDG-------------------------------------------------------------khVVFGqV 169 (217)
T KOG0880|consen 155 ---KTP-WLDG-------------------------------------------------------------KHVVFGQV 169 (217)
T ss_pred ---CCc-cccC-------------------------------------------------------------ceeEEeee
Confidence 999 9999 99999999
Q ss_pred hccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102 247 RQGFGVAREVSYVEA-ENDKPLVLNQMEDV 275 (426)
Q Consensus 247 ieGldvl~~I~~l~~-~~~~P~~~i~ilk~ 275 (426)
++||+++.+|+..++ ..++|.+...|..+
T Consensus 170 l~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~ 199 (217)
T KOG0880|consen 170 LEGMDVVRKIENVKTDERDKPLEDVVIANC 199 (217)
T ss_pred hhhHHHHHHHHhcccCCCCCccccEEEeec
Confidence 999999999999999 67889887666543
No 3
>KOG0879|consensus
Probab=100.00 E-value=5.2e-45 Score=300.59 Aligned_cols=172 Identities=45% Similarity=0.734 Sum_probs=158.6
Q ss_pred CcccccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCcc
Q psy6102 2 DKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDI 81 (426)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~ 81 (426)
....+.+.||.||||++|++.+.|||.||||.+.+|+|++||++.|+|++-+ -++..-|+++.|||||++|||||||.
T Consensus 2 ~~~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~--~g~PiGYK~~tFHRvIkdFMiQgGDF 79 (177)
T KOG0879|consen 2 AEQLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRK--DGVPIGYKNSTFHRVIKDFMIQGGDF 79 (177)
T ss_pred cccccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccccc--CCccccccccchHHHhhhheeccCce
Confidence 3455677899999999999999999999999999999999999999998753 24566699999999999999999999
Q ss_pred ccCCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEe
Q psy6102 82 TNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTV 161 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~ 161 (426)
.+++|+|-.||||.+|+||+|.++|+. ||+ ||||++ | |+ +||+|||||.
T Consensus 80 v~gDGtG~~sIy~~~F~DENFtlkH~~-----PGl--------------LSMANs---G-------~~--tNGCQFFITc 128 (177)
T KOG0879|consen 80 VNGDGTGVASIYGSTFPDENFTLKHDG-----PGL--------------LSMANS---G-------KD--TNGCQFFITC 128 (177)
T ss_pred ecCCCceEEEEcCCCCCCcceeeecCC-----Cce--------------eecccc---C-------CC--CCCceEEEEe
Confidence 999999999999999999999999999 999 999999 9 88 9999999999
Q ss_pred eccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccc
Q psy6102 162 SFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNG 241 (426)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 241 (426)
. .|. +||+ +|+
T Consensus 129 a-------kcd-fLD~-------------------------------------------------------------KHV 139 (177)
T KOG0879|consen 129 A-------KCD-FLDG-------------------------------------------------------------KHV 139 (177)
T ss_pred c-------ccc-cccC-------------------------------------------------------------ceE
Confidence 9 999 9999 999
Q ss_pred eechhhccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102 242 IFGCVRQGFGVAREVSYVEA-ENDKPLVLNQMEDV 275 (426)
Q Consensus 242 vFG~VieGldvl~~I~~l~~-~~~~P~~~i~ilk~ 275 (426)
+||+|++|+.++++|+.+++ .+.+|..+..+.++
T Consensus 140 VFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qC 174 (177)
T KOG0879|consen 140 VFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQC 174 (177)
T ss_pred EEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeec
Confidence 99999999999999999999 67888877666443
No 4
>KOG0881|consensus
Probab=100.00 E-value=2.7e-41 Score=275.44 Aligned_cols=150 Identities=39% Similarity=0.573 Sum_probs=140.5
Q ss_pred CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG 88 (426)
Q Consensus 9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~ 88 (426)
..|.|.++|+. |.|++|||-+-||+||.||..|++ .+||+|+.|||||++||||||||+ ++|+|
T Consensus 8 q~~~V~LeTsm-----G~i~~ElY~kHaP~TC~NF~eLar----------rgYYn~v~FHRii~DFmiQGGDPT-GTGRG 71 (164)
T KOG0881|consen 8 QPPNVTLETSM-----GKITLELYWKHAPRTCQNFAELAR----------RGYYNGVIFHRIIKDFMIQGGDPT-GTGRG 71 (164)
T ss_pred CCCeEEEeecc-----cceehhhhhhcCcHHHHHHHHHHh----------cccccceeeeehhhhheeecCCCC-CCCCC
Confidence 45789999987 999999999999999999999994 688999999999999999999998 89999
Q ss_pred CccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102 89 GESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF 167 (426)
Q Consensus 89 ~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~ 167 (426)
|.|+||..|+||- .+++|.. .|+ ||||+. | |+ +||||||||+.
T Consensus 72 GaSIYG~kF~DEi~~dLkhTG-----AGI--------------LsMANa---G-------Pn--TNgSQFFiTLA----- 115 (164)
T KOG0881|consen 72 GASIYGDKFEDEIHSDLKHTG-----AGI--------------LSMANA---G-------PN--TNGSQFFITLA----- 115 (164)
T ss_pred ccccccchhhhhhhhhhcccc-----hhh--------------hhhhcc---C-------CC--CCCceEEEEec-----
Confidence 9999999999996 5888988 899 999999 9 99 99999999999
Q ss_pred cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102 168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR 247 (426)
Q Consensus 168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi 247 (426)
|.+ |||| +|++||+|.
T Consensus 116 --Pt~-~LDG-------------------------------------------------------------KHTIFGRV~ 131 (164)
T KOG0881|consen 116 --PTQ-WLDG-------------------------------------------------------------KHTIFGRVC 131 (164)
T ss_pred --Ccc-ccCC-------------------------------------------------------------cceeehhhh
Confidence 999 9999 999999999
Q ss_pred ccccHHHHHhhchh-hCCcccccchhhh
Q psy6102 248 QGFGVAREVSYVEA-ENDKPLVLNQMED 274 (426)
Q Consensus 248 eGldvl~~I~~l~~-~~~~P~~~i~ilk 274 (426)
.||+++..+-.+.+ .+++|....++++
T Consensus 132 ~Gm~vikr~G~v~Td~~DRPi~~~kIik 159 (164)
T KOG0881|consen 132 SGMEVIKRMGMVETDNSDRPIDEVKIIK 159 (164)
T ss_pred hhHHHHHhhcceecCCCCCCccceeeEe
Confidence 99999999999999 5688988877765
No 5
>KOG0111|consensus
Probab=100.00 E-value=8.8e-40 Score=290.88 Aligned_cols=162 Identities=47% Similarity=0.752 Sum_probs=154.7
Q ss_pred cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG 86 (426)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (426)
...+|.||+++.|++...|+|++.|..+.+|+|++||..||+|+.|.| |.|++||||||.||+||||.++++|
T Consensus 133 a~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 133 AMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCC
Confidence 456899999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102 87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~ 166 (426)
+||.||||.+|.||+|.++|+. ||+ ||||+. | ++ +|||||||++.
T Consensus 206 tggksiygkkfddenf~lkht~-----pgt--------------lsmans---g-------an--tngsqffict~---- 250 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTM-----PGT--------------LSMANS---G-------AN--TNGSQFFICTE---- 250 (298)
T ss_pred CCCcccccccccccceeeecCC-----Cce--------------eecccc---C-------CC--CCCceEEEEec----
Confidence 9999999999999999999999 999 999999 9 99 99999999999
Q ss_pred ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102 167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV 246 (426)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V 246 (426)
... |||+ +|++||.|
T Consensus 251 ---ktd-wldg-------------------------------------------------------------khvvfghv 265 (298)
T KOG0111|consen 251 ---KTD-WLDG-------------------------------------------------------------KHVVFGHV 265 (298)
T ss_pred ---ccc-cccC-------------------------------------------------------------ceeEEeee
Confidence 888 9999 99999999
Q ss_pred hccccHHHHHhhchhhCCcccccchhhhH
Q psy6102 247 RQGFGVAREVSYVEAENDKPLVLNQMEDV 275 (426)
Q Consensus 247 ieGldvl~~I~~l~~~~~~P~~~i~ilk~ 275 (426)
++|+++++.++...+.++.|...+.|.++
T Consensus 266 ~eg~~vvrq~e~qgsksgkp~qkv~i~~c 294 (298)
T KOG0111|consen 266 VEGMNVVRQVEQQGSKSGKPQQKVKIVEC 294 (298)
T ss_pred cchHHHHHHHHhccCCCCCcceEEEEEec
Confidence 99999999999999999999877766543
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.1e-38 Score=285.40 Aligned_cols=162 Identities=51% Similarity=0.815 Sum_probs=148.1
Q ss_pred ceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCc
Q psy6102 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGE 90 (426)
Q Consensus 11 ~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~ 90 (426)
|+||||+++++++.|+|+||||.+.||+||+||++||++..+.+. +..+|+++.||||+|+|||||||+..++|+++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 689999999999999999999999999999999999987655432 456899999999999999999998878899999
Q ss_pred cccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102 91 SIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN 170 (426)
Q Consensus 91 ~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~ 170 (426)
+++|..|++|...++|++ +|+ ||||+. + |+ +++||||||++ +
T Consensus 79 ~~~g~~~~~e~~~~~h~~-----~G~--------------lsma~~---~-------~~--~~~sqFfIt~~-------~ 120 (164)
T cd01926 79 SIYGEKFPDENFKLKHTG-----PGL--------------LSMANA---G-------PN--TNGSQFFITTV-------K 120 (164)
T ss_pred cccCCccCCCCccccCCC-----ccE--------------EEeeEC---C-------CC--CcccEEEEEeC-------C
Confidence 999999999988889988 899 999999 8 88 99999999999 9
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102 171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF 250 (426)
Q Consensus 171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl 250 (426)
++ +||+ .|++||+|++|+
T Consensus 121 ~~-~Ld~-------------------------------------------------------------~~tvFG~V~~G~ 138 (164)
T cd01926 121 TP-WLDG-------------------------------------------------------------KHVVFGKVVEGM 138 (164)
T ss_pred CC-ccCC-------------------------------------------------------------cccEEEEEEEcH
Confidence 99 9999 999999999999
Q ss_pred cHHHHHhhchhhCCcccccchhhh
Q psy6102 251 GVAREVSYVEAENDKPLVLNQMED 274 (426)
Q Consensus 251 dvl~~I~~l~~~~~~P~~~i~ilk 274 (426)
+++++|+.+++++++|...+.+.+
T Consensus 139 dvl~~i~~~~~~~~~P~~~i~I~~ 162 (164)
T cd01926 139 DVVKKIENVGSGNGKPKKKVVIAD 162 (164)
T ss_pred HHHHHHHcCCCCCCCCcCCeEEEE
Confidence 999999999988778887766643
No 7
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.9e-38 Score=288.16 Aligned_cols=167 Identities=49% Similarity=0.749 Sum_probs=152.6
Q ss_pred cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG 86 (426)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (426)
...+|+||||+++++++.|+|+||||.+.||+||+||++||+|.... ..+|.++|+|+.||||+|+|||||||+..++|
T Consensus 12 ~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~-~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 12 MSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVG-SSGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred cCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCccc-ccCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 34589999999999999999999999999999999999999986643 24578999999999999999999999987789
Q ss_pred CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102 87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~ 166 (426)
++|.+++|..|++|...++|+. +|+ |||++. | |+ +++||||||++
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~-----~G~--------------lsma~~---g-------~~--~~~sqFfIt~~---- 135 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQ-----PGL--------------LSMANA---G-------PN--TNGSQFFITTV---- 135 (183)
T ss_pred CCCCcccccccCCccccccCCC-----CCE--------------EEeccC---C-------CC--CCcceEEEEeC----
Confidence 9999999999999988889988 899 999999 8 88 99999999999
Q ss_pred ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102 167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV 246 (426)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V 246 (426)
++| +||+ .|++||+|
T Consensus 136 ---~~~-~Ldg-------------------------------------------------------------~~tvFG~V 150 (183)
T PTZ00060 136 ---PCP-WLDG-------------------------------------------------------------KHVVFGKV 150 (183)
T ss_pred ---CCc-ccCC-------------------------------------------------------------CccEEEEE
Confidence 999 9999 99999999
Q ss_pred hccccHHHHHhhchhhCCcccccchhhh
Q psy6102 247 RQGFGVAREVSYVEAENDKPLVLNQMED 274 (426)
Q Consensus 247 ieGldvl~~I~~l~~~~~~P~~~i~ilk 274 (426)
++|++++++|+...+..+.|..++.+.+
T Consensus 151 i~G~dvl~~I~~~~~~~~~P~~~v~I~~ 178 (183)
T PTZ00060 151 IEGMEVVRAMEKEGTQSGYPKKPVVVTD 178 (183)
T ss_pred EccHHHHHHHHccCCCCCCCcCCeEEEE
Confidence 9999999999998887778888777654
No 8
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3.3e-38 Score=286.94 Aligned_cols=167 Identities=44% Similarity=0.737 Sum_probs=149.3
Q ss_pred cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG 86 (426)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (426)
.+.+++||||+++++++.|+|+||||.+.+|+||+||++||+|++... +....|+++.||||+|+|||||||+..++|
T Consensus 15 ~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~--g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 15 NPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKA--GLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcccc--CcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 355799999999999999999999999999999999999998765211 112349999999999999999999977889
Q ss_pred CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102 87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~ 166 (426)
+|+.++||..|++|.+.++|++ +|+ |||++. | |+ +++||||||++
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~-----~G~--------------lsma~~---g-------~~--s~~sqFfIt~~---- 137 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTG-----PGL--------------LSMANS---G-------PN--TNGCQFFITCA---- 137 (186)
T ss_pred CCcccccCCccCCcccccccCC-----CCE--------------EEEeeC---C-------CC--CcccEEEEECC----
Confidence 9999999999999988889998 899 999999 8 89 99999999999
Q ss_pred ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102 167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV 246 (426)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V 246 (426)
++| +||+ +|++||+|
T Consensus 138 ---~~p-~Ldg-------------------------------------------------------------~~tVFG~V 152 (186)
T PLN03149 138 ---KCD-WLDN-------------------------------------------------------------KHVVFGRV 152 (186)
T ss_pred ---CCC-ccCC-------------------------------------------------------------CceEEEEE
Confidence 999 9999 99999999
Q ss_pred h-ccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102 247 R-QGFGVAREVSYVEA-ENDKPLVLNQMEDV 275 (426)
Q Consensus 247 i-eGldvl~~I~~l~~-~~~~P~~~i~ilk~ 275 (426)
+ +|++++++|+.+.+ ..++|...+.+..+
T Consensus 153 i~eG~dvl~~I~~~~~~~~~~P~~~i~I~~c 183 (186)
T PLN03149 153 LGDGLLVVRKIENVATGPNNRPKLACVISEC 183 (186)
T ss_pred EECcHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 9 79999999999999 67888887776543
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=277.49 Aligned_cols=132 Identities=40% Similarity=0.631 Sum_probs=120.5
Q ss_pred CeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCc
Q psy6102 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (426)
Q Consensus 21 ~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 100 (426)
.|+.|+|+|+||++.||+||+||+.||+ .+||+|+.|||||++|||||||++.++|+||+ +++|++|
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E 71 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVK----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDE 71 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHH----------cCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccc
Confidence 4567999999999999999999999994 68899999999999999999999977799998 5899999
Q ss_pred cccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102 101 NFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV 180 (426)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~ 180 (426)
++...|++ +.||+ |||||+ |+ |+ +++||||||+. +.| |||+
T Consensus 72 ~~~~~~~~---~~~G~--------------lsMA~~---g~------P~--t~~SQFFI~~~-------~~~-~Ld~--- 112 (158)
T COG0652 72 NFALNGDR---HKRGT--------------LSMARA---GD------PN--SNGSQFFITVV-------DNP-FLDG--- 112 (158)
T ss_pred cccccccc---CCcce--------------EeEccc---CC------cC--CccCeEEEEec-------CCc-ccCC---
Confidence 88776654 22788 999999 87 99 99999999999 999 9999
Q ss_pred HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102 181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE 260 (426)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~ 260 (426)
+|++||+|++|++++++|+...
T Consensus 113 ----------------------------------------------------------~ytVFG~Vv~GmdvvdkI~~~~ 134 (158)
T COG0652 113 ----------------------------------------------------------KYTVFGQVVEGMDVVDKIKNGD 134 (158)
T ss_pred ----------------------------------------------------------CCcEEEEEehhHHHHHHHHcCC
Confidence 9999999999999999999987
Q ss_pred hh
Q psy6102 261 AE 262 (426)
Q Consensus 261 ~~ 262 (426)
+.
T Consensus 135 ~~ 136 (158)
T COG0652 135 TD 136 (158)
T ss_pred cc
Confidence 73
No 10
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=7e-38 Score=293.39 Aligned_cols=165 Identities=27% Similarity=0.429 Sum_probs=147.2
Q ss_pred cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCC-CCccccccCCcccccccc-cEEeeCccccC
Q psy6102 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRIIPQ-FMIQGGDITNF 84 (426)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~-~~k~~~y~~~~f~rv~~~-~~iq~G~~~~~ 84 (426)
...+++|||||+|++++.|+|+||||.+.||+||+||++||+|+.+.+. .++..+|+|+.||||+++ |||||||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 3568999999999999999999999999999999999999999876542 344567999999999986 8999999863
Q ss_pred CCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102 85 NGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL 164 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~ 164 (426)
++.+++|..|+||++.++|++ +|+ |||++. | |+ ++|||||||++
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~-----~G~--------------LsMan~---G-------pn--tngSQFfITl~-- 171 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTE-----RGL--------------LTMISE---G-------PH--TSGSVFGITLG-- 171 (249)
T ss_pred ---CCccCCCCcccCccccccCCC-----CCE--------------EEeCcC---C-------CC--CccceEEEECC--
Confidence 355778999999999999999 999 999999 8 99 99999999999
Q ss_pred ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102 165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG 244 (426)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG 244 (426)
++| |||+ +|++||
T Consensus 172 -----~~p-~LDg-------------------------------------------------------------k~vVFG 184 (249)
T PTZ00221 172 -----PSP-SLDF-------------------------------------------------------------KQVVFG 184 (249)
T ss_pred -----CCC-ccCC-------------------------------------------------------------CceEEE
Confidence 999 9999 999999
Q ss_pred hhhccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102 245 CVRQGFGVAREVSYVEA-ENDKPLVLNQMEDV 275 (426)
Q Consensus 245 ~VieGldvl~~I~~l~~-~~~~P~~~i~ilk~ 275 (426)
+|++|++++++|+.+.+ ..++|...+.|..+
T Consensus 185 rVveGmdVv~kIe~v~~d~~grP~~~V~I~~C 216 (249)
T PTZ00221 185 KAVDDLSLLEKLESLPLDDVGRPLLPVTVSFC 216 (249)
T ss_pred EEEeCHHHHHHHHcCCcCCCCCCCCCeEEEEC
Confidence 99999999999999987 56788887777653
No 11
>KOG0883|consensus
Probab=100.00 E-value=2.3e-36 Score=288.35 Aligned_cols=142 Identities=39% Similarity=0.597 Sum_probs=133.7
Q ss_pred eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102 22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN 101 (426)
Q Consensus 22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 101 (426)
|+.|.+-|||+.|.+|++|+||+.|| +.|||+|+.|||.|++||||||||+ ++|+||+||+|.+|.||+
T Consensus 284 Tn~G~lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf 352 (518)
T KOG0883|consen 284 TNHGPLNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF 352 (518)
T ss_pred ccCCceeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCcccccc
Confidence 45699999999999999999999999 5799999999999999999999998 899999999999999998
Q ss_pred c-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102 102 F-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV 180 (426)
Q Consensus 102 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~ 180 (426)
+ .+.|+. ||+ |||||. | |+ +|||||||+.. +|. |||+
T Consensus 353 ~~~l~H~g-----RGv--------------lSMANs---G-------pn--TNgSQFFItyr-------sck-hLd~--- 390 (518)
T KOG0883|consen 353 CSNLSHDG-----RGV--------------LSMANS---G-------PN--TNGSQFFITYR-------SCK-HLDN--- 390 (518)
T ss_pred CCCCCcCC-----cce--------------EeeccC---C-------CC--CCCceEEEEec-------chh-hccc---
Confidence 6 688998 999 999999 9 99 99999999999 999 9999
Q ss_pred HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102 181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE 260 (426)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~ 260 (426)
+|++||+|+.|++++.+++.++
T Consensus 391 ----------------------------------------------------------KHTIFGrvVGGldtL~amEnve 412 (518)
T KOG0883|consen 391 ----------------------------------------------------------KHTIFGRVVGGLDTLTAMENVE 412 (518)
T ss_pred ----------------------------------------------------------cceeeeeeeccHHHHHHHhcCC
Confidence 9999999999999999999999
Q ss_pred h-hCCcccccchhhh
Q psy6102 261 A-ENDKPLVLNQMED 274 (426)
Q Consensus 261 ~-~~~~P~~~i~ilk 274 (426)
+ ..++|.+.+.+..
T Consensus 413 ~d~~DrP~e~I~i~~ 427 (518)
T KOG0883|consen 413 TDEKDRPKEEIKIED 427 (518)
T ss_pred CCCCCCcccceEEee
Confidence 9 5688988777654
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=7.1e-36 Score=262.61 Aligned_cols=141 Identities=38% Similarity=0.521 Sum_probs=129.3
Q ss_pred eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102 22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN 101 (426)
Q Consensus 22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 101 (426)
|+.|+|+||||++.||+||+||++||+ .+||+++.||||+|+|||||||+. ++|+|+.+++|..|++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 72 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHAR----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF 72 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence 456999999999999999999999996 478999999999999999999986 789999999999999997
Q ss_pred c-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102 102 F-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV 180 (426)
Q Consensus 102 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~ 180 (426)
. .++|.+ +|+ |||++. + |+ +++||||||++ ++| +||+
T Consensus 73 ~~~~~h~~-----~G~--------------l~ma~~---~-------~~--s~~SqFfIt~~-------~~p-~Ldg--- 110 (148)
T cd01927 73 SPSLKHDR-----PYT--------------LSMANA---G-------PN--TNGSQFFITTV-------ATP-WLDN--- 110 (148)
T ss_pred ccccCcCC-----CeE--------------EEEeeC---C-------CC--CCCceEEEEcC-------CCc-ccCC---
Confidence 5 677888 899 999999 8 88 99999999999 999 9999
Q ss_pred HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102 181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE 260 (426)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~ 260 (426)
.|++||+|++|++++++|+.+.
T Consensus 111 ----------------------------------------------------------~~tvFG~V~~G~dvl~~I~~~~ 132 (148)
T cd01927 111 ----------------------------------------------------------KHTVFGRVVKGMDVVQRIENVK 132 (148)
T ss_pred ----------------------------------------------------------CceEEEEEEcCHHHHHHHHcCC
Confidence 9999999999999999999999
Q ss_pred h-hCCcccccchhh
Q psy6102 261 A-ENDKPLVLNQME 273 (426)
Q Consensus 261 ~-~~~~P~~~i~il 273 (426)
+ .+++|..++.|.
T Consensus 133 ~~~~~~P~~~i~I~ 146 (148)
T cd01927 133 TDKNDRPYEDIKII 146 (148)
T ss_pred CCCCCCCcCCeEEE
Confidence 8 567888877654
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2e-35 Score=259.02 Aligned_cols=141 Identities=38% Similarity=0.582 Sum_probs=128.9
Q ss_pred eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102 22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN 101 (426)
Q Consensus 22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 101 (426)
|+.|+|+||||.+.||+||+||++||+ .+||+++.||||+|+|||||||+. ++|+++.+++|.+|++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~ 72 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAK----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI 72 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence 456999999999999999999999995 478999999999999999999986 678899999999999995
Q ss_pred -ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102 102 -FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV 180 (426)
Q Consensus 102 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~ 180 (426)
..++|++ +|+ |||++. + |+ +++||||||++ ++| +||+
T Consensus 73 ~~~~~h~~-----~G~--------------l~ma~~---~-------~~--s~~sqFfIt~~-------~~p-~Ld~--- 110 (146)
T cd01922 73 HPELKHTG-----AGI--------------LSMANA---G-------PN--TNGSQFFITLA-------PTP-WLDG--- 110 (146)
T ss_pred ccCcCCCC-----CeE--------------EEEeeC---C-------CC--CCccEEEEEcC-------CCc-ccCC---
Confidence 4678887 899 999999 8 88 99999999999 999 9999
Q ss_pred HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102 181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE 260 (426)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~ 260 (426)
.|++||+|++|++++++|+.+.
T Consensus 111 ----------------------------------------------------------~~tvFG~V~~G~dvl~~I~~~~ 132 (146)
T cd01922 111 ----------------------------------------------------------KHTIFGRVSKGMKVIENMVEVQ 132 (146)
T ss_pred ----------------------------------------------------------CCCEEEEEEcCHHHHHHHHhCC
Confidence 9999999999999999999998
Q ss_pred hhCCcccccchhh
Q psy6102 261 AENDKPLVLNQME 273 (426)
Q Consensus 261 ~~~~~P~~~i~il 273 (426)
++.++|...+.+.
T Consensus 133 ~~~~~P~~~I~I~ 145 (146)
T cd01922 133 TQTDRPIDEVKIL 145 (146)
T ss_pred CCCCCcCCCeEEe
Confidence 8877888777653
No 14
>KOG0882|consensus
Probab=100.00 E-value=7.8e-36 Score=290.05 Aligned_cols=153 Identities=33% Similarity=0.461 Sum_probs=140.1
Q ss_pred ceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCc
Q psy6102 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGE 90 (426)
Q Consensus 11 ~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~ 90 (426)
+++.=+-.|..|+.|+|.|.||++.|||||+||-.-|+ .|||+|..|||||++||||+|||. ++|+||+
T Consensus 400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~r----------ngyy~~~~fhriik~fmiqtgdp~-g~gtgge 468 (558)
T KOG0882|consen 400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSR----------NGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGE 468 (558)
T ss_pred ceecccceEEEecccceEEEecccccchhhhhhhcccc----------CccccCcchHHhhhhheeecCCCC-CCCCCCc
Confidence 44445556667778999999999999999999999885 588999999999999999999997 8999999
Q ss_pred cccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccC
Q psy6102 91 SIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTN 169 (426)
Q Consensus 91 ~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~ 169 (426)
||+|..|+||+. .++|++ |.. |||||. | |+ +||||||||+.
T Consensus 469 siwg~dfedefh~~lrhdr-----pft--------------~smana---g-------~n--tngsqffit~~------- 510 (558)
T KOG0882|consen 469 SIWGKDFEDEFHPNLRHDR-----PFT--------------VSMANA---G-------PN--TNGSQFFITTV------- 510 (558)
T ss_pred ccccccchhhcCcccccCC-----Cce--------------EEeccc---C-------CC--CCCceEEEEec-------
Confidence 999999999984 789999 999 999999 9 99 99999999999
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcc
Q psy6102 170 NCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQG 249 (426)
Q Consensus 170 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieG 249 (426)
++| |||+ +|++||+|..|
T Consensus 511 ~tp-wld~-------------------------------------------------------------khtvfgrv~~g 528 (558)
T KOG0882|consen 511 PTP-WLDG-------------------------------------------------------------KHTVFGRVTAG 528 (558)
T ss_pred Ccc-ccCC-------------------------------------------------------------cceeEEEEecc
Confidence 999 9999 99999999999
Q ss_pred ccHHHHHhhchh-hCCcccccchhhh
Q psy6102 250 FGVAREVSYVEA-ENDKPLVLNQMED 274 (426)
Q Consensus 250 ldvl~~I~~l~~-~~~~P~~~i~ilk 274 (426)
|+++..|+++.+ ..++|.+...++.
T Consensus 529 m~vvqri~~v~t~k~drp~e~v~iin 554 (558)
T KOG0882|consen 529 MDVVQRIEQVKTDKYDRPYEDVKIIN 554 (558)
T ss_pred hhHHhHhhhcccCcCCCCCCceeEEE
Confidence 999999999999 6789988777653
No 15
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=3.2e-35 Score=259.75 Aligned_cols=146 Identities=39% Similarity=0.555 Sum_probs=131.9
Q ss_pred EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI 92 (426)
Q Consensus 13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~ 92 (426)
|.|+|+ .|+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||+. ++|+|+.++
T Consensus 3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~ 66 (153)
T cd01928 3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCA----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESI 66 (153)
T ss_pred EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHh----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCcc
Confidence 666665 4999999999999999999999996 478999999999999999999996 678999999
Q ss_pred cCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCch
Q psy6102 93 YGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC 171 (426)
Q Consensus 93 ~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~ 171 (426)
+|..|++|+. .++|+. +|+ |||++. + |+ +++|||||+++ ++
T Consensus 67 ~~~~~~~e~~~~~~~~~-----~G~--------------v~ma~~---~-------~~--~~~SqFfI~~~-------~~ 108 (153)
T cd01928 67 WGKKFEDEFRETLKHDS-----RGV--------------VSMANN---G-------PN--TNGSQFFITYA-------KQ 108 (153)
T ss_pred CCCccccccccCCCcCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEEeC-------CC
Confidence 9999999976 567877 899 999999 8 88 99999999999 89
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcccc
Q psy6102 172 EIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG 251 (426)
Q Consensus 172 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGld 251 (426)
| +||+ .|++||+|++|++
T Consensus 109 ~-~Ld~-------------------------------------------------------------~~tvFG~V~~G~d 126 (153)
T cd01928 109 P-HLDG-------------------------------------------------------------KYTVFGKVIDGFE 126 (153)
T ss_pred c-ccCC-------------------------------------------------------------CceEEEEEEeCHH
Confidence 9 9999 9999999999999
Q ss_pred HHHHHhhchh-hCCcccccchhhh
Q psy6102 252 VAREVSYVEA-ENDKPLVLNQMED 274 (426)
Q Consensus 252 vl~~I~~l~~-~~~~P~~~i~ilk 274 (426)
++++|+.+.+ ..++|...+.|.+
T Consensus 127 vl~~I~~~~~~~~~~P~~~i~I~~ 150 (153)
T cd01928 127 TLDTLEKLPVDKKYRPLEEIRIKD 150 (153)
T ss_pred HHHHHHcCCCCCCCCCcCCeEEEE
Confidence 9999999988 5678888776643
No 16
>KOG0884|consensus
Probab=100.00 E-value=2.2e-35 Score=239.50 Aligned_cols=142 Identities=39% Similarity=0.553 Sum_probs=129.6
Q ss_pred EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI 92 (426)
Q Consensus 13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~ 92 (426)
|.+.|.+ |+|.||||.+.+|+||+||+.||. ..||++++|||-+|+||+|+||++ .+|+||.||
T Consensus 3 vtlht~~-----gdikiev~~e~tpktce~~l~~~~----------~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~si 66 (161)
T KOG0884|consen 3 VTLHTDV-----GDIKIEVFCERTPKTCENFLALCA----------SDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSI 66 (161)
T ss_pred EEEeecc-----CcEEEEEEecCChhHHHHHHHHhh----------hhhccceeecCCCCCcEEEeCCCC-CCCCCCccc
Confidence 5666665 999999999999999999999995 466999999999999999999997 789999999
Q ss_pred cCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCch
Q psy6102 93 YGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC 171 (426)
Q Consensus 93 ~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~ 171 (426)
+|.+|+||+. .++|+. +|. +|||+. | |+ +|+||||||.+ ..
T Consensus 67 wg~~fede~~~~lkh~~-----rg~--------------vsmann---g-------p~--tn~sqffity~-------kq 108 (161)
T KOG0884|consen 67 WGKKFEDEYSEYLKHNV-----RGV--------------VSMANN---G-------PN--TNGSQFFITYG-------KQ 108 (161)
T ss_pred cCCcchHHHHHHHhhcc-----cee--------------EEcccC---C-------CC--CCCceEEEEec-------CC
Confidence 9999999975 688998 899 999999 9 99 99999999999 99
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcccc
Q psy6102 172 EIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG 251 (426)
Q Consensus 172 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGld 251 (426)
| |||- +|++||+|++|++
T Consensus 109 ~-hldm-------------------------------------------------------------kytvfgkvidg~e 126 (161)
T KOG0884|consen 109 P-HLDM-------------------------------------------------------------KYTVFGKVIDGLE 126 (161)
T ss_pred C-ccce-------------------------------------------------------------eEeeeeeeccchh
Confidence 9 9999 9999999999999
Q ss_pred HHHHHhhchhhC--Ccccccc
Q psy6102 252 VAREVSYVEAEN--DKPLVLN 270 (426)
Q Consensus 252 vl~~I~~l~~~~--~~P~~~i 270 (426)
.+++++.++.++ .+|....
T Consensus 127 tldele~l~v~~ktyrpl~~~ 147 (161)
T KOG0884|consen 127 TLDELEKLPVNEKTYRPLNDV 147 (161)
T ss_pred hHHHHhhcccCccccccchhe
Confidence 999999999843 4666543
No 17
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.4e-34 Score=257.49 Aligned_cols=146 Identities=38% Similarity=0.562 Sum_probs=132.0
Q ss_pred EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI 92 (426)
Q Consensus 13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~ 92 (426)
|.|+|+ .|+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||+. ++|+|+.++
T Consensus 2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~ 65 (159)
T cd01923 2 VRLHTN-----KGDLNLELHCDKAPKACENFIKLCK----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESI 65 (159)
T ss_pred EEEEEc-----cccEEEEEeCCCChHHHHHHHHHHh----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCccc
Confidence 566665 5999999999999999999999995 578999999999999999999996 689999999
Q ss_pred cCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCch
Q psy6102 93 YGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC 171 (426)
Q Consensus 93 ~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~ 171 (426)
+|..|++|.. .++|++ +|+ |||++. + |+ +++||||||++ ++
T Consensus 66 ~g~~~~~E~~~~~~h~~-----~G~--------------v~ma~~---~-------~~--s~~sqFfIt~~-------~~ 107 (159)
T cd01923 66 WGKPFKDEFKPNLSHDG-----RGV--------------LSMANS---G-------PN--TNGSQFFITYR-------SC 107 (159)
T ss_pred cCCccCcccccCcCcCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEECC-------CC
Confidence 9999999964 567887 899 999999 8 88 99999999999 99
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcccc
Q psy6102 172 EIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG 251 (426)
Q Consensus 172 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGld 251 (426)
| +||+ .|++||+|++|++
T Consensus 108 ~-~Ld~-------------------------------------------------------------~~~vFG~V~~G~~ 125 (159)
T cd01923 108 K-HLDG-------------------------------------------------------------KHTVFGRVVGGLE 125 (159)
T ss_pred c-ccCC-------------------------------------------------------------CccEEEEEEcCHH
Confidence 9 9999 9999999999999
Q ss_pred HHHHHhhchh-hCCcccccchhhh
Q psy6102 252 VAREVSYVEA-ENDKPLVLNQMED 274 (426)
Q Consensus 252 vl~~I~~l~~-~~~~P~~~i~ilk 274 (426)
++++|+...+ .+++|...+.+.+
T Consensus 126 vl~~I~~~~~~~~~~P~~~i~I~~ 149 (159)
T cd01923 126 TLEAMENVPDPGTDRPKEEIKIED 149 (159)
T ss_pred HHHHHHcCCCCCCCCCCCCeEEEE
Confidence 9999999988 5678888776654
No 18
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.9e-33 Score=252.05 Aligned_cols=142 Identities=32% Similarity=0.498 Sum_probs=124.7
Q ss_pred eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccC-------
Q psy6102 22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYG------- 94 (426)
Q Consensus 22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~------- 94 (426)
|+.|+|+||||++.||+||+||++||+ .+||+|+.||||+++|||||||+. ++|+++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~ 72 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCK----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA 72 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHh----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence 456999999999999999999999996 478999999999999999999996 67888888765
Q ss_pred CCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc-hh
Q psy6102 95 PCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN-CE 172 (426)
Q Consensus 95 ~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~-~~ 172 (426)
..|++|.. .++|+. +|+ ||||+. + ++ +++||||||++ + ++
T Consensus 73 ~~~~~e~~~~~~h~~-----~G~--------------l~ma~~---~-------~~--~~~SQFfIt~~-------~~~~ 114 (166)
T cd01921 73 RFFEPEILPLLKHSK-----KGT--------------VSMVNA---G-------DN--LNGSQFYITLG-------ENLD 114 (166)
T ss_pred cccCcccCCccccCC-----ceE--------------EEEeEC---C-------CC--CccceEEEEcC-------CCCc
Confidence 35777764 667877 899 999999 8 78 89999999997 5 78
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccH
Q psy6102 173 IHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGV 252 (426)
Q Consensus 173 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldv 252 (426)
+||+ +|++||+|++|+++
T Consensus 115 -~Ldg-------------------------------------------------------------~~tvFG~Vi~G~dv 132 (166)
T cd01921 115 -YLDG-------------------------------------------------------------KHTVFGQVVEGFDV 132 (166)
T ss_pred -ccCC-------------------------------------------------------------CccEEEEEEcCHHH
Confidence 9999 99999999999999
Q ss_pred HHHHhhchh-hCCcccccchhhh
Q psy6102 253 AREVSYVEA-ENDKPLVLNQMED 274 (426)
Q Consensus 253 l~~I~~l~~-~~~~P~~~i~ilk 274 (426)
+++|+.+.+ .+++|...+.|.+
T Consensus 133 v~~I~~~~~~~~~~P~~~i~I~~ 155 (166)
T cd01921 133 LEKINDAIVDDDGRPLKDIRIKH 155 (166)
T ss_pred HHHHHcCCCCCCCCCCCCeEEEE
Confidence 999999988 5678888776653
No 19
>KOG0865|consensus
Probab=100.00 E-value=1.4e-33 Score=248.50 Aligned_cols=157 Identities=48% Similarity=0.765 Sum_probs=147.1
Q ss_pred CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccc---cccccEEeeCccccCC
Q psy6102 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR---IIPQFMIQGGDITNFN 85 (426)
Q Consensus 9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~r---v~~~~~iq~G~~~~~~ 85 (426)
.+|+||||+++++++.|+++++||.|..|+|++||.+||+|++|.+ |.+++||| .+++||+||||.+..+
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence 4899999999999999999999999999999999999999998877 99999999 3457999999999999
Q ss_pred CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102 86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN 165 (426)
Q Consensus 86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~ 165 (426)
|+||.|+||+.|+||++.++|.. ||+ ||||+. | |+ +++|||||++.
T Consensus 75 gtggkSiy~ekF~DenFilkhtg-----pGi--------------LSmaNa---g-------pn--tngsqfficta--- 120 (167)
T KOG0865|consen 75 GTGGKSIYGEKFDDENFILKHTG-----PGI--------------LSMANA---G-------PN--TNGSQFFICTA--- 120 (167)
T ss_pred CccceEecccccCCcCcEEecCC-----CCe--------------eehhhc---C-------CC--ccccEEEEEcc---
Confidence 99999999999999999999999 899 999999 9 99 99999999999
Q ss_pred cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102 166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC 245 (426)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~ 245 (426)
..+ |||+ +|++||+
T Consensus 121 ----kte-wLdg-------------------------------------------------------------khVVfGk 134 (167)
T KOG0865|consen 121 ----KTE-WLDG-------------------------------------------------------------KHVVFGK 134 (167)
T ss_pred ----ccc-cccC-------------------------------------------------------------ceeEcCc
Confidence 777 9999 9999999
Q ss_pred hhccccHHHHHhhchhhCCcccccchh
Q psy6102 246 VRQGFGVAREVSYVEAENDKPLVLNQM 272 (426)
Q Consensus 246 VieGldvl~~I~~l~~~~~~P~~~i~i 272 (426)
|.+|++++++++.....++.+...+.+
T Consensus 135 v~eGm~iv~a~e~~gs~~gk~~~~i~i 161 (167)
T KOG0865|consen 135 VKEGMDIVEAMERFGSRNGKTSKKITI 161 (167)
T ss_pred eEcccchhhhhhccCCcCCcccccEEE
Confidence 999999999999988888877665544
No 20
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.9e-33 Score=254.33 Aligned_cols=155 Identities=25% Similarity=0.352 Sum_probs=126.2
Q ss_pred cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG 86 (426)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (426)
..++++|.|+|+. |+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||+....+
T Consensus 25 ~~~~~~v~l~T~~-----G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRvi~~f~iQgG~~~~~~~ 89 (190)
T PRK10903 25 AKGDPHVLLTTSA-----GNIELELNSQKAPVSVKNFVDYVN----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ 89 (190)
T ss_pred cCCCcEEEEEecc-----ccEEEEEeCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence 4578899998875 999999999999999999999995 5789999999999999999999863322
Q ss_pred CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102 87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~ 166 (426)
.+.++.+|++|.....|+. +|+ ||||+. ++ |+ +++||||||++
T Consensus 90 ---~~~~~~~~~~e~~~~l~~~-----~G~--------------lama~~---~~------~~--sn~SQFfIt~~---- 132 (190)
T PRK10903 90 ---QKKPNPPIKNEADNGLRNT-----RGT--------------IAMART---AD------KD--SATSQFFINVA---- 132 (190)
T ss_pred ---CCCCCCcccCcccccCcCC-----CcE--------------EEeCCC---CC------CC--CcccEEEEECc----
Confidence 2234677899965555666 899 999997 64 88 99999999999
Q ss_pred ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102 167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV 246 (426)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V 246 (426)
+++ +||+. +.+.+|++||+|
T Consensus 133 ---~~~-~ld~~--------------------------------------------------------~~dg~ytvFG~V 152 (190)
T PRK10903 133 ---DNA-FLDHG--------------------------------------------------------QRDFGYAVFGKV 152 (190)
T ss_pred ---Ccc-cccCC--------------------------------------------------------ccCCCccEEEEE
Confidence 888 88850 001289999999
Q ss_pred hccccHHHHHhhchhhC-----Ccccccchhh
Q psy6102 247 RQGFGVAREVSYVEAEN-----DKPLVLNQME 273 (426)
Q Consensus 247 ieGldvl~~I~~l~~~~-----~~P~~~i~il 273 (426)
++|++++++|+.+.++. +.|..++.|.
T Consensus 153 ~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 184 (190)
T PRK10903 153 VKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 184 (190)
T ss_pred ecCHHHHHHHHcCCCCCCCCCCCcccCCeEEE
Confidence 99999999999998843 4666555553
No 21
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.98 E-value=1.1e-32 Score=247.96 Aligned_cols=149 Identities=34% Similarity=0.546 Sum_probs=131.3
Q ss_pred CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG 89 (426)
Q Consensus 10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~ 89 (426)
..+|.|+|+. |+|+||||++.+|+||+||++||+ .+||+|+.||||+|+|||||||+. ++|+|+
T Consensus 5 ~~~v~i~Ts~-----G~i~ieL~~~~~P~t~~nF~~L~~----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~ 68 (171)
T cd01925 5 TGKVILKTTA-----GDIDIELWSKEAPKACRNFIQLCL----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGTGG 68 (171)
T ss_pred ccEEEEEEcc-----ccEEEEEeCCCChHHHHHHHHHHh----------cCCCCCCEEEEEcCCcEEEccccC-CCCccC
Confidence 4568888875 999999999999999999999995 578999999999999999999986 689999
Q ss_pred ccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102 90 ESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT 168 (426)
Q Consensus 90 ~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~ 168 (426)
.+++|.+|++|.. .+.|++ +|+ ||||+. | ++ +++||||||++
T Consensus 69 ~s~~g~~~~~E~~~~~~~~~-----~G~--------------l~ma~~---g-------~~--s~~sqFfIt~~------ 111 (171)
T cd01925 69 ESIYGEPFKDEFHSRLRFNR-----RGL--------------VGMANA---G-------DD--SNGSQFFFTLD------ 111 (171)
T ss_pred cccCCCccCcccccCcCCCC-----CcE--------------EEECcC---C-------CC--CcccEEEEEcC------
Confidence 9999999999965 466887 899 999999 8 88 99999999999
Q ss_pred CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102 169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ 248 (426)
Q Consensus 169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie 248 (426)
+++ +||+ +|++||+|+.
T Consensus 112 -~~~-~ldg-------------------------------------------------------------~~tvFG~V~g 128 (171)
T cd01925 112 -KAD-ELNN-------------------------------------------------------------KHTLFGKVTG 128 (171)
T ss_pred -CCc-ccCC-------------------------------------------------------------CceEEEEEEE
Confidence 899 9999 9999999983
Q ss_pred -cccHHHHHhhchh-hCCcccccchhhh
Q psy6102 249 -GFGVAREVSYVEA-ENDKPLVLNQMED 274 (426)
Q Consensus 249 -Gldvl~~I~~l~~-~~~~P~~~i~ilk 274 (426)
++.++++|+.+.. .+++|..++.+.+
T Consensus 129 ~~~~~v~~i~~~~~~~~~~P~~~i~I~~ 156 (171)
T cd01925 129 DTIYNLLKLAEVETDKDERPVYPPKITS 156 (171)
T ss_pred CcHHHHHHHhcCCcCCCCCcCCCeEEEE
Confidence 4567889999888 4577887766643
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.98 E-value=1.7e-32 Score=244.79 Aligned_cols=147 Identities=24% Similarity=0.302 Sum_probs=115.8
Q ss_pred eeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCccc
Q psy6102 23 KVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF 102 (426)
Q Consensus 23 ~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 102 (426)
+.|+|+|+||++.||+||+||++||+ .+||+++.||||+|+|||||||+..+.+.+ .++.+|++|..
T Consensus 7 ~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~ 73 (164)
T PRK10791 7 NHGDIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEAN 73 (164)
T ss_pred ccccEEEEEeCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCccc
Confidence 45999999999999999999999995 578999999999999999999986433322 23667888854
Q ss_pred cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHHHH
Q psy6102 103 KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKL 182 (426)
Q Consensus 103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~~~ 182 (426)
...++. +|+ ||||+. +. |+ +++|||||++. +++ +||..
T Consensus 74 ~~~~~~-----~G~--------------lsma~~---~~------p~--s~~SQFfI~~~-------~~~-~ld~~---- 111 (164)
T PRK10791 74 NGLKNT-----RGT--------------LAMART---QA------PH--SATAQFFINVV-------DND-FLNFS---- 111 (164)
T ss_pred ccccCC-----CcE--------------EEECCC---CC------cC--CccceEEEEec-------Cch-hhccc----
Confidence 333445 798 999998 74 88 99999999999 888 87740
Q ss_pred HHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchhh
Q psy6102 183 RKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAE 262 (426)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~~ 262 (426)
+.... ...|++||+|++|++++++|+.+.+.
T Consensus 112 --------------------------------------~~~~d-----------~~~~tvFG~V~eG~dvl~~I~~~~~~ 142 (164)
T PRK10791 112 --------------------------------------GESLQ-----------GWGYCVFAEVVEGMDVVDKIKGVATG 142 (164)
T ss_pred --------------------------------------ccccC-----------CCCccEEEEEecCHHHHHHHHcCcCC
Confidence 00000 01699999999999999999999884
Q ss_pred C-----Ccccccchhh
Q psy6102 263 N-----DKPLVLNQME 273 (426)
Q Consensus 263 ~-----~~P~~~i~il 273 (426)
. +.|...+.+.
T Consensus 143 ~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 143 RSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCCccCCCcCCCeEEE
Confidence 3 5777766554
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.97 E-value=5.8e-32 Score=239.62 Aligned_cols=144 Identities=25% Similarity=0.319 Sum_probs=116.1
Q ss_pred eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102 22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN 101 (426)
Q Consensus 22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 101 (426)
|+.|+|+|+||++.||+||+||++||+ .+||+++.||||+|+|||||||+....+. ..++.+|++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~ 70 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVR----------KGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA 70 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence 456999999999999999999999995 57899999999999999999998743222 23467788886
Q ss_pred ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHHH
Q psy6102 102 FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVK 181 (426)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~~ 181 (426)
....|+. +|+ ||||+. +. |+ +++|||||+++ +++ +||+.+
T Consensus 71 ~~~~~~~-----~G~--------------v~ma~~---~~------~~--s~~SqFfI~~~-------~~~-~ld~~~-- 110 (155)
T cd01920 71 GNGLSNT-----RGT--------------IAMART---NA------PD--SATSQFFINLK-------DNA-SLDYQN-- 110 (155)
T ss_pred cccccCC-----ceE--------------EEECCC---CC------CC--CccceEEEECC-------Cch-hcCCcc--
Confidence 5555566 788 999998 64 78 99999999999 888 888610
Q ss_pred HHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchh
Q psy6102 182 LRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEA 261 (426)
Q Consensus 182 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~ 261 (426)
. ...|++||+|++|++++++|+.+++
T Consensus 111 -------------------------------------~-----------------~~~ytvFG~V~eG~dvl~~I~~~~~ 136 (155)
T cd01920 111 -------------------------------------E-----------------QWGYTVFGEVTEGMDVVDKIAGVET 136 (155)
T ss_pred -------------------------------------c-----------------CCCccEEEEEecCHHHHHHHHcCCc
Confidence 0 0179999999999999999999998
Q ss_pred hC-----Ccccccchh
Q psy6102 262 EN-----DKPLVLNQM 272 (426)
Q Consensus 262 ~~-----~~P~~~i~i 272 (426)
+. +.|...+.+
T Consensus 137 ~~~~~~~~~p~~~v~i 152 (155)
T cd01920 137 YSFGSYQDVPVQDVII 152 (155)
T ss_pred cCCCCcCCCcCCCeEE
Confidence 44 355554443
No 24
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.97 E-value=1.7e-30 Score=234.25 Aligned_cols=136 Identities=27% Similarity=0.333 Sum_probs=108.2
Q ss_pred CeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC-------------
Q psy6102 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT------------- 87 (426)
Q Consensus 21 ~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~------------- 87 (426)
.|+.|+|+|+||++.||+||+||++||+ .+||++++||||+|+|||||||+.. +++
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRVi~~fviQgGdp~~-~~~~~~~~~~~~~~~~ 71 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVE----------RGFYDGMEFHRVEGGFVVQTGDPQG-KNPGFPDPETGKSRTI 71 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHH----------hCCcCCCEEEEecCCcEEEecCCCC-CCCCcccccccccccc
Confidence 3678999999999999999999999995 6889999999999999999999963 222
Q ss_pred --------CCccccCCCcC-----CccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCcccc
Q psy6102 88 --------GGESIYGPCFE-----DENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGS 154 (426)
Q Consensus 88 --------~~~~~~~~~~~-----~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (426)
++.++++.+++ ++.....|+. +|+ ||||+. ++ .|+ +++
T Consensus 72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~G~--------------laMa~~---~~-----~~n--s~~ 122 (176)
T cd01924 72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNA-----FGA--------------IAMART---EF-----DPN--SAS 122 (176)
T ss_pred cceecccCCCCCccCcccccccccccccccccCC-----CCe--------------EEEccC---CC-----CCC--Ccc
Confidence 23345555543 3445556666 788 999998 74 147 999
Q ss_pred ceEEEEeeccccccC-chhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHh
Q psy6102 155 YQFSCTVSFLNTFTN-NCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLV 233 (426)
Q Consensus 155 sqF~i~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (426)
|||||+++ .+...+ +++ |||+
T Consensus 123 SQFfI~~~-~~~~~~~~~~-~Ldg-------------------------------------------------------- 144 (176)
T cd01924 123 SQFFFLLK-DNELTPSRNN-VLDG-------------------------------------------------------- 144 (176)
T ss_pred ceEEEEec-cccccCCCCC-ccCC--------------------------------------------------------
Confidence 99999998 222222 567 8888
Q ss_pred hhcccccceechhhccccHHHHHhhc
Q psy6102 234 KKKKKKNGIFGCVRQGFGVAREVSYV 259 (426)
Q Consensus 234 ~~~~~~~~vFG~VieGldvl~~I~~l 259 (426)
+|++||+|++||+++++|...
T Consensus 145 -----~ytVFG~VveG~dvl~~I~~g 165 (176)
T cd01924 145 -----RYAVFGYVTDGLDILRELKVG 165 (176)
T ss_pred -----CceEEEEEecCHHHHHhhcCC
Confidence 999999999999999999753
No 25
>KOG0885|consensus
Probab=99.96 E-value=1.5e-30 Score=247.88 Aligned_cols=116 Identities=36% Similarity=0.570 Sum_probs=106.5
Q ss_pred cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG 86 (426)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (426)
.+..-+|.+.|+. |+|.||||+..||++|.||++||. .|||+|+.|||++|+|++|||||+ ++|
T Consensus 9 P~ttgkvil~TT~-----G~I~iELW~kE~P~acrnFiqKOG----------egyy~nt~fhrlvp~f~~Qggdp~-~~g 72 (439)
T KOG0885|consen 9 PPTTGKVILKTTK-----GDIDIELWAKECPKACRNFIQLCL----------EGYYDNTEFHRLVPGFLVQGGDPT-GTG 72 (439)
T ss_pred CCccceEEEEecc-----CceeeeehhhhhhHHHHHHHHHHH----------hccccCceeeeeccchhcccCCCC-CCC
Confidence 3445678888886 999999999999999999999996 588999999999999999999997 899
Q ss_pred CCCccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102 87 TGGESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~ 165 (426)
+||.||||.+|.+|+. .+.|++ +|+ |+|||. | -+ .||||||||++
T Consensus 73 tGgesiyg~~fadE~h~Rlrf~r-----rGl--------------vgmana---~-------~~--~ngsqFfftl~--- 118 (439)
T KOG0885|consen 73 TGGESIYGRPFADEFHPRLRFNR-----RGL--------------VGMANA---G-------ND--DNGSQFFFTLG--- 118 (439)
T ss_pred CCccccccccchhhcCcceeeec-----cce--------------eeeccc---C-------CC--CCCceEEEEec---
Confidence 9999999999999974 677888 999 999999 8 56 89999999999
Q ss_pred cccCchhhhhhh
Q psy6102 166 TFTNNCEIHLQR 177 (426)
Q Consensus 166 ~~~~~~~~~l~~ 177 (426)
++| ||++
T Consensus 119 ----~~~-el~n 125 (439)
T KOG0885|consen 119 ----DTP-ELNN 125 (439)
T ss_pred ----CCh-Hhcc
Confidence 999 9999
No 26
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.96 E-value=4.8e-29 Score=219.26 Aligned_cols=139 Identities=40% Similarity=0.617 Sum_probs=121.5
Q ss_pred eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102 22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN 101 (426)
Q Consensus 22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 101 (426)
|+.|+|+|+||++.+|+||+||++||++ ++|+++.||||+|+|+|||||+....+.+ +.++..|++|.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~ 71 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARG----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN 71 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhc----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence 3459999999999999999999999964 57999999999999999999997443322 45678899998
Q ss_pred cccc-CCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102 102 FKLK-GIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV 180 (426)
Q Consensus 102 ~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~ 180 (426)
.... |+. +|+ |||++. + ++ +++|||||+++ +++ +||+
T Consensus 72 ~~~~~~~~-----~G~--------------v~~~~~---~-------~~--~~~sqF~Itl~-------~~~-~ld~--- 109 (146)
T cd00317 72 FPLKYHHR-----RGT--------------LSMANA---G-------PN--TNGSQFFITTA-------PTP-HLDG--- 109 (146)
T ss_pred ccCcCcCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEECC-------CCc-ccCC---
Confidence 7655 777 899 999999 8 77 89999999999 888 9999
Q ss_pred HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102 181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE 260 (426)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~ 260 (426)
.|++||+|++|++++++|...+
T Consensus 110 ----------------------------------------------------------~~~vfG~V~~G~~vl~~I~~~~ 131 (146)
T cd00317 110 ----------------------------------------------------------KHTVFGKVVEGMDVVDKIERGD 131 (146)
T ss_pred ----------------------------------------------------------CceEEEEEeCCHHHHHHHHcCC
Confidence 9999999999999999999999
Q ss_pred hh-CCcccccchh
Q psy6102 261 AE-NDKPLVLNQM 272 (426)
Q Consensus 261 ~~-~~~P~~~i~i 272 (426)
++ ++.|...+.+
T Consensus 132 ~~~~~~P~~~i~I 144 (146)
T cd00317 132 TDENGRPIKPVTI 144 (146)
T ss_pred CCCCCcCcCceEE
Confidence 94 7888877655
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.94 E-value=2.8e-27 Score=210.05 Aligned_cols=148 Identities=39% Similarity=0.580 Sum_probs=120.3
Q ss_pred EEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC-ccc
Q psy6102 14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG-ESI 92 (426)
Q Consensus 14 ~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~-~~~ 92 (426)
||+++.++ .|+|+||||++.+|+||+||++||+ .++|+|+.||||+|+++||+|++......+. ...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~----------~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT----------SGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH----------TTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc----------ccccCCceeecccccceeeeeeccCCCCccccccc
Confidence 56666543 7999999999999999999999996 4679999999999999999999874333111 123
Q ss_pred cCCCcCCccc--cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102 93 YGPCFEDENF--KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN 170 (426)
Q Consensus 93 ~~~~~~~e~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~ 170 (426)
.+..+++|.. .+.| . +|+ |+|++. +. .|+ +++|||||+++ +
T Consensus 69 ~~~~~~~E~~~~~~~~-~-----~G~--------------v~~~~~---~~-----~~~--~~~sqF~I~l~-------~ 111 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKH-R-----RGL--------------VSMARS---GK-----DPN--SNGSQFFITLS-------D 111 (155)
T ss_dssp TBSCBSSSGBTTSSSS-S-----TTE--------------EEEEBS---SS-----STT--EBSSEEEEESS-------C
T ss_pred Cccccccccccccccc-c-----cee--------------eeeccc---cc-----CCC--CCCceEEeecc-------C
Confidence 3456899974 3444 5 799 999988 61 156 89999999999 9
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102 171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF 250 (426)
Q Consensus 171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl 250 (426)
.+ ++|+ .|++||+|++|+
T Consensus 112 ~~-~ld~-------------------------------------------------------------~~~vfG~V~~G~ 129 (155)
T PF00160_consen 112 AP-HLDG-------------------------------------------------------------KYTVFGRVIEGM 129 (155)
T ss_dssp GG-GGTT-------------------------------------------------------------TSEEEEEEEEHH
T ss_pred CC-cccc-------------------------------------------------------------ceeeeeEEehhH
Confidence 99 9999 999999999999
Q ss_pred cHHHHHhhchhhCCcccccchhh
Q psy6102 251 GVAREVSYVEAENDKPLVLNQME 273 (426)
Q Consensus 251 dvl~~I~~l~~~~~~P~~~i~il 273 (426)
+++++|+...++. +|..++.+.
T Consensus 130 ~vl~~i~~~~~~~-~p~~~v~I~ 151 (155)
T PF00160_consen 130 DVLDKIEAGPTDE-RPKQDVTIS 151 (155)
T ss_dssp HHHHHHHTSBBTT-EBSSTEEEE
T ss_pred HHHHHHHCCCCCC-ccCCCeEEE
Confidence 9999999988866 777666553
No 28
>KOG0415|consensus
Probab=99.94 E-value=2.1e-27 Score=224.79 Aligned_cols=142 Identities=36% Similarity=0.564 Sum_probs=123.1
Q ss_pred eEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCcc
Q psy6102 12 IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGES 91 (426)
Q Consensus 12 ~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~ 91 (426)
-|.++|++ |+|||.||.+.+|.||.||++|| |..||+.+.||-|.++|.+|.|||+ ++|.||.|
T Consensus 2 sVlieTtl-----GDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~s 65 (479)
T KOG0415|consen 2 SVLIETTL-----GDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGES 65 (479)
T ss_pred cEEEEeec-----ccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcce
Confidence 37788876 99999999999999999999999 6789999999999999999999998 79999999
Q ss_pred ccCC-------CcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeec
Q psy6102 92 IYGP-------CFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSF 163 (426)
Q Consensus 92 ~~~~-------~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~ 163 (426)
|||. -|++|+. .+.|.+ -|+ |||++. | .+ .+|||||||++
T Consensus 66 i~~~lyG~q~rffeaE~~p~l~Hsk-----~G~--------------vsmvs~---g-------~n--~~gSQF~iTlg- 113 (479)
T KOG0415|consen 66 IYGVLYGEQARFFEAEFLPKLKHSK-----MGT--------------VSMVSA---G-------EN--LNGSQFFITLG- 113 (479)
T ss_pred eeeecccccchhhhhhhcccccccc-----cce--------------EEeecC---C-------cc--cccceEEEEcc-
Confidence 9863 2677764 577777 788 999999 9 67 99999999999
Q ss_pred cccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhccccccee
Q psy6102 164 LNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIF 243 (426)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vF 243 (426)
++.. .||+ .|++|
T Consensus 114 -----enLd-yLDg-------------------------------------------------------------~htvf 126 (479)
T KOG0415|consen 114 -----ENLD-YLDG-------------------------------------------------------------KHTVF 126 (479)
T ss_pred -----cccc-cccc-------------------------------------------------------------cccee
Confidence 2333 6888 99999
Q ss_pred chhhccccHHHHHhhchh-hCCcccc
Q psy6102 244 GCVRQGFGVAREVSYVEA-ENDKPLV 268 (426)
Q Consensus 244 G~VieGldvl~~I~~l~~-~~~~P~~ 268 (426)
|+|.+|++++.+|+.... .+.+|-.
T Consensus 127 GqV~EG~dtl~kiNea~vD~~~rPyk 152 (479)
T KOG0415|consen 127 GQVAEGFDTLTKINEAIVDPKNRPYK 152 (479)
T ss_pred eehhhhHHHHHHHHHHhcCCCCCccc
Confidence 999999999999998877 4455554
No 29
>KOG0543|consensus
Probab=99.85 E-value=1.5e-20 Score=184.08 Aligned_cols=155 Identities=32% Similarity=0.548 Sum_probs=141.4
Q ss_pred chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC 349 (426)
Q Consensus 270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~ 349 (426)
++.+..+...++.||.+|+.|+|..|+..|.+|+..+.+...... ++..........++.|+|.|++++++|.+|+..|
T Consensus 202 ~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c 280 (397)
T KOG0543|consen 202 EERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESC 280 (397)
T ss_pred HHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Confidence 356778999999999999999999999999999999876555444 3333344566789999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCC
Q psy6102 350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 425 (426)
Q Consensus 350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~~ 425 (426)
+++|.++|+|.+|+||+|+|+..+++|+.|+.+|++|++++|+|..+...+..|...++++.++++++|++||...
T Consensus 281 ~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 281 NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999863
No 30
>KOG0553|consensus
Probab=99.82 E-value=1.3e-19 Score=171.21 Aligned_cols=125 Identities=23% Similarity=0.421 Sum_probs=120.3
Q ss_pred hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 350 (426)
Q Consensus 271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~ 350 (426)
+....++.++..||.+.+.++|.+|+..|++||++ +|.++.+|+|||.+|.++|+|+.|+++|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------------~P~nAVyycNRAAAy~~Lg~~~~AVkDce 139 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------------DPTNAVYYCNRAAAYSKLGEYEDAVKDCE 139 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------------CCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 45668999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102 351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 411 (426)
Q Consensus 351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~ 411 (426)
.||.+||.+.++|-++|.+|..+|++++|++.|++||+++|+|+..+..|..+...+++..
T Consensus 140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999988877655
No 31
>KOG4234|consensus
Probab=99.67 E-value=5.4e-16 Score=138.64 Aligned_cols=136 Identities=25% Similarity=0.367 Sum_probs=123.1
Q ss_pred chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC 349 (426)
Q Consensus 270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~ 349 (426)
......+..++..||.+|+.|+|.+|...|+.||++++... .....-+|.|+|.|+++++.++.||.+|
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----------~e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----------TEERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 33455788899999999999999999999999999976544 3455779999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
.+||+|+|.+.+|+.+||.+|..+..|++|+++|.+.++++|...++...+.++-..+....++.+.
T Consensus 158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888877776643
No 32
>KOG0545|consensus
Probab=99.63 E-value=5.6e-15 Score=135.79 Aligned_cols=159 Identities=25% Similarity=0.424 Sum_probs=142.7
Q ss_pred cccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch--hhhhhhcCcchHHHHHHHHHHHHHccCH
Q psy6102 265 KPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAY 342 (426)
Q Consensus 265 ~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~--~~~~~~~~p~~~~~~~nlA~~~~~lg~~ 342 (426)
+.....+..+.+..+.+.||.+|+.|+|.+|+..|..||-.+......+. ..++.+++.....++.|.+.|++..++|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 34445566678899999999999999999999999999999887766544 5667778888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 343 ~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~-~a~~~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
-++++.|+.+|..+|.|.+|||++|.++...=+..+|.++|+++|+++|.-+ .+...+..+..++.+.++..|..+++|
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~km 326 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKM 326 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999865 566778888888888888999999999
Q ss_pred hc
Q psy6102 422 FQ 423 (426)
Q Consensus 422 f~ 423 (426)
|+
T Consensus 327 fs 328 (329)
T KOG0545|consen 327 FS 328 (329)
T ss_pred cC
Confidence 96
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=1.2e-14 Score=127.48 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=109.6
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
.+...|..+++.|+|++|+.+|.+++.+ +|.+..+|.++|.++.++|++++|+..|+++++++|
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA----------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3667899999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
+++.+++++|.++..+|++++|+..|++|+++.|+++..+..++.+...+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888877654
No 34
>KOG0548|consensus
Probab=99.61 E-value=3.8e-15 Score=149.97 Aligned_cols=117 Identities=25% Similarity=0.403 Sum_probs=113.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+...+..|+.+|+.|+|..|+.+|++||.. +|.+..+|.|||.||.+++.+..|+.+|+.+++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr----------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR----------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4777888899999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
++|++.++|+|.|.|+..+.+|+.|++.|+++++++|++.++...+.+|...+
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998864
No 35
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.57 E-value=3.3e-14 Score=142.82 Aligned_cols=118 Identities=17% Similarity=0.313 Sum_probs=113.1
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
..++..|+.+|..++|.+|+.+|.+||++ +|.+..+|+++|.+++++|++++|+.++++||.++
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL----------------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45778899999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~ 410 (426)
|+++.+|+++|.+++.+|+|++|+.+|+++++++|++..+...++.|...+.+.
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998888553
No 36
>KOG4648|consensus
Probab=99.55 E-value=1.2e-14 Score=139.12 Aligned_cols=119 Identities=28% Similarity=0.357 Sum_probs=112.1
Q ss_pred hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 350 (426)
Q Consensus 271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~ 350 (426)
..++.+..+++.||.||++|.|++||.+|.+++.+ .|.++..+.|||.+|++++.|..|..+|+
T Consensus 92 ~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 92 QLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV----------------YPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred HHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc----------------CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 33556677899999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
.|+.||..+.+||.+||.+...+|...+|.++++.+|+|+|++.+....++.+..
T Consensus 156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999988888777765
No 37
>KOG0547|consensus
Probab=99.54 E-value=5.6e-14 Score=139.97 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=113.4
Q ss_pred cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348 (426)
Q Consensus 269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~ 348 (426)
.++..+.+..++..||.+|+.|+|++||.+|++||++ .|.-+..|.|||.||..+|+|++.+++
T Consensus 108 ~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------------~p~epiFYsNraAcY~~lgd~~~Vied 171 (606)
T KOG0547|consen 108 KEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------------CPDEPIFYSNRAACYESLGDWEKVIED 171 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------------CCCCchhhhhHHHHHHHHhhHHHHHHH
Confidence 4555778999999999999999999999999999999 788899999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
|.+||+++|++++||+||+.++..+|++++|+.+.....-++ -+|..+.-.+.+++..+++.+..
T Consensus 172 ~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~ 237 (606)
T KOG0547|consen 172 CTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAK 237 (606)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987554433 36677777777777766655443
No 38
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.52 E-value=2.7e-13 Score=118.68 Aligned_cols=105 Identities=9% Similarity=0.124 Sum_probs=99.8
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
.+..+..+..|..+++.|++++|...|+....+ +|.+...|+++|.|+..+|+|.+|+..|.+|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346778999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
+.++|+++.++++.|.|++.+|+.+.|++.|+.|+.+.-.+
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999987333
No 39
>KOG4626|consensus
Probab=99.51 E-value=1.2e-13 Score=140.72 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=113.1
Q ss_pred ccceechhhccccHHHH-Hhhchh-hCCcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhh
Q psy6102 239 KNGIFGCVRQGFGVARE-VSYVEA-ENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316 (426)
Q Consensus 239 ~~~vFG~VieGldvl~~-I~~l~~-~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~ 316 (426)
.|.-.|.|.+.+...+. +..... -+-+|. .+..+-++|-+|+.+|+.+.||..|++||++
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----------- 315 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLRPN-------HAVAHGNLACIYYEQGLLDLAIDTYKRALEL----------- 315 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-------chhhccceEEEEeccccHHHHHHHHHHHHhc-----------
Confidence 66667777664443322 222211 223333 6677888888888888888889888888888
Q ss_pred hhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396 (426)
Q Consensus 317 ~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a 396 (426)
+|..+.+|+|+|.++-..|+..+|..+|++||.+.|+++++++++|.++..+|.+++|...|.+|++..|+-.++
T Consensus 316 -----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 316 -----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA 390 (966)
T ss_pred -----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence 778888888888888888888888888888888888888888888888888888888888788888777777777
Q ss_pred HHHHHHHHHHHhhHHHHH
Q psy6102 397 LKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 397 ~~~l~~i~~~l~~~~~a~ 414 (426)
..+|+.+++..++.+++.
T Consensus 391 ~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAI 408 (966)
T ss_pred hhhHHHHHHhcccHHHHH
Confidence 777777777777777664
No 40
>KOG0550|consensus
Probab=99.49 E-value=9e-14 Score=136.17 Aligned_cols=139 Identities=20% Similarity=0.374 Sum_probs=117.3
Q ss_pred cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348 (426)
Q Consensus 269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~ 348 (426)
.-...+..+.+++.||.+|++|+|..|.++|+.||.+-|.. ...++.+|.|||.+..++|+..+|+.+
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------------~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------------KKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------------cchhHHHHHHhHhhhcccCCchhhhhh
Confidence 33445577889999999999999999999999999983221 345677999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102 349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 423 (426)
Q Consensus 349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~ 423 (426)
|+.|+.|||.+.++|.++|.|+..++++++|+++|++|+++.-+ .+....+..+...+++. .|+.|++..+
T Consensus 310 c~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS---kRkd~ykilG 380 (486)
T KOG0550|consen 310 CNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS---KRKDWYKILG 380 (486)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh---hhhhHHHHhh
Confidence 99999999999999999999999999999999999999999876 77777777766665543 4455665544
No 41
>KOG4626|consensus
Probab=99.49 E-value=1.2e-13 Score=140.60 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=124.0
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+.+|+++|++|-..+.|+.|+.+|.+|+.+ .|.++.++.|+|.+|+..|..+-||..|+++|
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----------------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNL----------------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----------------CCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 36788999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k 420 (426)
+++|+.++||.++|.++..+|+..+|..+|.+||.+.|.++.+..+|+.+++.+++.+++.+ +|.+
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~ 379 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLK 379 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 4443
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=1.3e-12 Score=112.14 Aligned_cols=117 Identities=15% Similarity=0.272 Sum_probs=108.7
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+.....+|..+++.+++++|+..|++++.. +|.+..++.++|.++..+|++++|+.+++++++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY----------------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456789999999999999999999999998 899999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
++|.++..++.+|.++..+|++++|+..|+++++++|++.........+...+
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777766665543
No 43
>KOG0548|consensus
Probab=99.43 E-value=4.9e-13 Score=134.85 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=110.0
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
+..++..||.+|..|+|+.|+.+|++||.+ +|.+-.+|.|+..||..+|+|++|+++..+.+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l----------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l 65 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML----------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL 65 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc----------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 404 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~ 404 (426)
+|+++++|.++|.++..+|+|++|+..|.+.|+.+|+|+.....+..++
T Consensus 66 ~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 66 NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999999999999999999999998
No 44
>KOG1126|consensus
Probab=99.42 E-value=5.8e-13 Score=137.20 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=95.0
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAV 335 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~ 335 (426)
..++.|...||.|.-+++++.||++|++|+++.+.+.=+ .....+...+|.+-.+|+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 367899999999999999999999999999983211100 00233445566666666666666
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
|+++++++.|.-.+++|+.++|.+...+...|.++..+|+.++|+..|++|+.++|.|+......+.++..++++.++..
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666665544
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=4.7e-12 Score=124.16 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=102.1
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..++.+|..+...|++++|+..|++|+++ +|.++.+|+++|.++..+|++++|+..++++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~ 395 (426)
++|++..+|+++|.++...|++++|+++|+++++++|+++.
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999974
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=7.2e-12 Score=134.90 Aligned_cols=142 Identities=8% Similarity=0.056 Sum_probs=100.2
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAV 335 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~ 335 (426)
..+..+..+|..++..|++++|+..|.+++++.+..... ...+...+++|.++.+|+++|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456678888999999999999999999999873321111 00233445567777777777777
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
++.+|++++|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++.+.|+++.++..++.++..+++.+++.+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777666654
No 47
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.35 E-value=1.9e-11 Score=131.66 Aligned_cols=123 Identities=10% Similarity=0.158 Sum_probs=98.5
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQL 337 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~~ 337 (426)
...+..+|..++..|++++|+..|.++++..+..... ...+....++|.+..++.++|.++.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 4456666666677777777777777766653222111 1134455569999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 338 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 338 ~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
++|++++|+..+++++++.|+++.+++.+|.++..+|++++|++.|++|++++|.+.....
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999998655443
No 48
>KOG1155|consensus
Probab=99.35 E-value=1.3e-11 Score=122.71 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=114.7
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
++...-.||-|.-++++++|+.+|++|+++ +|....+|..+|.-|+.|++...|++.|++|+++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKL----------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhc----------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 345677899999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+|.+..|||.+|++|..++-..-|+-+|++|+++.|+|+.+|..|+.|+..+.+.++|.+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888876
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=1.4e-11 Score=113.81 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=101.3
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHH-HHccC--HHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ-LKFKA--YKRAINLCDD 351 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~-~~lg~--~~~Ai~~~~~ 351 (426)
.+..|..+|..+...|++++|+..|.+|+++ .|.+..++.++|.++ ...|+ +++|++.+++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQL----------------RGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 6778999999999999999999999999999 999999999999985 67787 5999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102 352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400 (426)
Q Consensus 352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l 400 (426)
+++++|+++.+++.+|.+++.+|++++|+.+|+++++++|.+..-...+
T Consensus 136 al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 136 ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999776444443
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=6.9e-11 Score=109.14 Aligned_cols=118 Identities=11% Similarity=0.038 Sum_probs=109.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg 367 (426)
..++.++++..+.++++. +|.+...|..+|.+|+.+|++++|+..|++|++++|+++.+++.+|
T Consensus 51 ~~~~~~~~i~~l~~~L~~----------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA 114 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRA----------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA 114 (198)
T ss_pred CchhHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 367789999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHH-HHcCC--hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 368 RAQ-VSMNN--FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 368 ~a~-~~lg~--~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
.++ ...|+ +++|.+.++++++++|++..++..++.+....++++++.. .|+++.
T Consensus 115 ~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL 171 (198)
T PRK10370 115 TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVL 171 (198)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 986 67787 5999999999999999999999999999999999999876 555543
No 51
>KOG1126|consensus
Probab=99.30 E-value=2.8e-11 Score=124.95 Aligned_cols=129 Identities=17% Similarity=0.289 Sum_probs=123.5
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
+.-.+|+.+|.+|.++++++.|.-+|++|+++ +|.+..+.+.+|..+.++|+.++|+..+++|+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI----------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC----------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 35678999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 418 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~ 418 (426)
.+||.++-..|.+|.+++.++++++|+..+++..++.|++..+...++++++++++...|.++.-
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999998876543
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.29 E-value=5.1e-11 Score=104.39 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy6102 296 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 375 (426)
Q Consensus 296 i~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~ 375 (426)
..+|++|+++ +|.+ +.++|.++.++|++++|+..|++++.++|.+..+|+.+|.++..+|+
T Consensus 13 ~~~~~~al~~----------------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV----------------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc----------------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 3568888887 7765 66899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 376 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 376 ~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
+++|+..|++|+.++|++..++..++.++..+++.+++...
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 53
>KOG0551|consensus
Probab=99.29 E-value=2e-11 Score=116.93 Aligned_cols=109 Identities=26% Similarity=0.402 Sum_probs=95.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.|+.+++.||.||+.++|..|+..|+++|..-.. -...++.+|.|||.|.+.+|+|..|+.+|.+|+.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~------------D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCA------------DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCC------------CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999986211 1356788999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~ 395 (426)
++|++.++++|-|.|++.+.++.+|+..++..+.++-+...
T Consensus 148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 99999999999999999999988888777766665544433
No 54
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=1.4e-11 Score=93.45 Aligned_cols=67 Identities=27% Similarity=0.556 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLP 391 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg-~~~~Al~~l~kAl~l~P 391 (426)
++.+|.++|.+++++++|++|+.+|+++|+++|+++.+|+++|.++..+| ++++|+++|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 47789999999999999999999999999999999999999999999999 79999999999999998
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.27 E-value=7.9e-11 Score=98.05 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=99.3
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
+..++..|..+++.|+|++|+..|.+++.. .|.+ ..+++.+|.++++.+++++|+..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK----------------YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 356889999999999999999999999987 4443 678999999999999999999999999
Q ss_pred HHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102 353 LLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401 (426)
Q Consensus 353 L~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~ 401 (426)
+..+|++ ..+++.+|.++..++++++|+..|+++++..|++..+.....
T Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 66 VKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 9999885 788999999999999999999999999999999987665543
No 56
>KOG1155|consensus
Probab=99.26 E-value=1.1e-10 Score=116.17 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=122.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
...+|--+|..|...++-..|+..|.+|+++ +|.+-++|+.+|.+|--|+...-|+-++++|++
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi----------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI----------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 4567889999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
+.|++...|..+|.||..+++.++|+.+|.+|+....-+..++..|+.++..+++..++.. .|.+++
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~-~yek~v 493 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ-YYEKYV 493 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999988899999999999999999988864 444443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=4e-10 Score=103.47 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=92.4
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
+..+..+|..++..|++++|+..|.++++. .|.+..++.++|.++..+|++++|+..+.+++..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL----------------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 344455555555555555555555555555 6777778888888888888888888888888875
Q ss_pred C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 356 E--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 356 d--p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
. +.....++.+|.++...|++++|...|++++..+|++..++..++.++...++.+++..
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 3 45567788888888888888888888888888888888888888888888888877764
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.5e-10 Score=123.09 Aligned_cols=126 Identities=8% Similarity=-0.016 Sum_probs=103.1
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..+..+|..+...|++++|+..|++|+++ +|.++.+++++|.++..+|++++|+..++++++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL----------------SPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4556777788888888888888888888888 888888888888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
++|.++.+++.++.+++.+|++++|+..++++++.. |+++.++..++.++..+|+.++|...
T Consensus 401 l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 401 LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 888888777777777777888888888888888774 67788888888888888888777654
No 59
>KOG0376|consensus
Probab=99.23 E-value=1.1e-11 Score=124.18 Aligned_cols=121 Identities=26% Similarity=0.358 Sum_probs=115.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..+...++.+|..+.|+.|+..|.+||++ +|..+.++.+||.++++.++|..|+.++.+|++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l----------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL----------------DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc----------------CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 4677889999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 411 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~ 411 (426)
++|...++|+++|.+.+.++++.+|+.+|++...+.|+++.+...+..|.....+++
T Consensus 67 ~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 67 LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998876643
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.7e-10 Score=122.77 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=102.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg 367 (426)
..+++.+|+..+.+|+++ +|.++.++..+|.++...|++++|+..|++|++++|+++.+|+.+|
T Consensus 316 ~~~~~~~A~~~~~~Al~l----------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 379 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL----------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG 379 (553)
T ss_pred cchHHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456799999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
.++..+|++++|+..+++|++++|.+..+...+..+....++++++..
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999999999999999998776666666667788776654
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=1.7e-10 Score=124.42 Aligned_cols=130 Identities=6% Similarity=-0.084 Sum_probs=123.8
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..+..+|....+.|.+++|...+..++++ .|++..++.++|.++.+++++++|+..++++|.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR----------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
.+|+++.+++.+|.++..+|++++|++.|++++..+|+++.++..++.+++.+|+.++|.. +|++.
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a 214 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAG 214 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998864 44443
No 62
>KOG4642|consensus
Probab=99.21 E-value=4.7e-11 Score=109.84 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=97.3
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..+++.|+.+|..+.|..||.+|.+||.+ +|..+..|.|+|.||+++++++.+..+|.+|+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------------nP~~~~Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc----------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 46788999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
+++|+.++++|.+|.+++....|++|+..+++|..+.
T Consensus 72 ql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 72 QLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997763
No 63
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.21 E-value=2.3e-10 Score=127.90 Aligned_cols=122 Identities=7% Similarity=0.014 Sum_probs=72.2
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
.+..+|..+.+.|++++|+..|.+++++ +|.++.++.++|.++..+|++++|+..+++|++++|
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l----------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL----------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3444455555555555555555555554 666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+++.+++++|.++..+|++++|+.+|++|++++|++..+....+.+.......+++.+
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666655555555544444443
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=4.7e-10 Score=103.02 Aligned_cols=126 Identities=11% Similarity=0.108 Sum_probs=113.6
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...+..+|..++..|++++|+..|.++++... .+....++.++|.++...|++++|+..+.+++..
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34577889999999999999999999997510 3566788999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+|.+..+++.+|.++...|++++|+..+++++.+.|.+...+..+..+....++.+++..
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999888899888888777654
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=7.9e-10 Score=101.61 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348 (426)
Q Consensus 269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~ 348 (426)
.......+.....+|..|++.|++..|...+++||+. +|.+..+|..||.+|.++|+.+.|-+.
T Consensus 28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~----------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~ 91 (250)
T COG3063 28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH----------------DPSYYLAHLVRAHYYQKLGENDLADES 91 (250)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcCChhhHHHH
Confidence 3455567888999999999999999999999999999 888888888888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
|++||.++|++.+++.+.|.-++.+|++++|...|++|+.. .|.-...+.+++.|..+.++..+++
T Consensus 92 YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 92 YRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred HHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 88888888888777777777666667766666666666652 3344556666666666666655554
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.17 E-value=4.7e-10 Score=125.46 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=101.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg 367 (426)
..|++++|+..|.+|+++ +|. ..++.++|.++.++|++++|+..+.+++.++|+++.+++++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l----------------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI----------------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred hCCCHHHHHHHHHHHHHh----------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 336666666666666665 886 899999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
.++..+|++++|++.|++|++++|+++.++..++.++..+++.+++..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999998876
No 67
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=2.6e-10 Score=88.36 Aligned_cols=99 Identities=33% Similarity=0.546 Sum_probs=91.4
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
.++.+|..++..|++++|+..+.++++. .|....++..+|.++...+++++|+..+++++.+.|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL----------------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678889999999999999999999988 777778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392 (426)
Q Consensus 358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~ 392 (426)
.+..+++.+|.++..+|++++|...++++++++|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999988874
No 68
>PRK15331 chaperone protein SicA; Provisional
Probab=99.17 E-value=3e-10 Score=100.03 Aligned_cols=119 Identities=16% Similarity=0.270 Sum_probs=108.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
..+..+..|..+|+.|+|++|...|+-...+ ++.+.+.|..+|.|+..+++|++|+..|..|..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999988888 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~ 410 (426)
++++++...|+.|+|++.+|+.+.|+.+|+.|+. .|.+..+...-...+..+.+.
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTA 154 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999998 688877777666666655543
No 69
>KOG0547|consensus
Probab=99.16 E-value=1.9e-10 Score=115.12 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=83.3
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAA 334 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~ 334 (426)
...++.+...|..+|-.|++-.|...++++|.+.+....- .....+..++|.++++|+.||.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 4468899999999999999999999999999983322220 0023344445555555555555
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
+++-+++|++|+.+|++++.|+|.++-++..++.+++++++++++...|+.+++..|..+++....++++...++..++.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555544444444
Q ss_pred H
Q psy6102 415 K 415 (426)
Q Consensus 415 k 415 (426)
+
T Consensus 483 k 483 (606)
T KOG0547|consen 483 K 483 (606)
T ss_pred H
Confidence 3
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.15 E-value=6.5e-10 Score=95.33 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=91.4
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~ 401 (426)
+|.+..+...+|.+++..|++++|+..+++++.++|.++.+++++|.++..+|++++|+..|++++.++|.+...+..++
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHH
Q psy6102 402 FVRKQMRHHLNLEK 415 (426)
Q Consensus 402 ~i~~~l~~~~~a~k 415 (426)
.++...++.+++.+
T Consensus 93 ~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 93 ECLLALGEPESALK 106 (135)
T ss_pred HHHHHcCCHHHHHH
Confidence 99999999988865
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=1e-09 Score=107.59 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=104.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg 367 (426)
.....+.++..+.++|...+- -.+..+..|+++|.++..+|++++|+.+|+++++++|+++.+|+.+|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 105 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDL------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG 105 (296)
T ss_pred CchHHHHHHHHHHHHHccccC------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345788899999999964210 03455889999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
.++..+|++++|++.|+++++++|++..++.+++.++...++.+++.+.
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999988753
No 72
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=1.4e-10 Score=87.85 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=64.8
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDIL 353 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL 353 (426)
.+..|..+|..++..++|++|+.+|++||++ +|.++.+|+++|.|+.++| ++.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4678999999999999999999999999999 9999999999999999999 7999999999999
Q ss_pred HhCC
Q psy6102 354 LMEP 357 (426)
Q Consensus 354 ~ldp 357 (426)
+++|
T Consensus 66 ~l~P 69 (69)
T PF13414_consen 66 KLDP 69 (69)
T ss_dssp HHST
T ss_pred HcCc
Confidence 9998
No 73
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.14 E-value=9e-10 Score=99.24 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=96.0
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..++.+|..+...|++++|+.+|.++++..+. .+....++.++|.++.++|++++|+..+.+++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-------------PNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778999999999999999999999999987221 12246799999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCc
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNN--------------FEQGLQDYEQALDLLPND 393 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~--------------~~~Al~~l~kAl~l~P~n 393 (426)
.+.|.+..++..+|.++..+|+ +.+|++++++++.++|++
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999988 688999999999999987
No 74
>KOG0624|consensus
Probab=99.14 E-value=4.7e-10 Score=108.05 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=103.7
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.++..+++|+.++..+++..|+..|-.|++. +|.+-.+++.||-+|+.+|+-..|+.++.++|+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 5677899999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~ 401 (426)
+.|+..-|...+|.+++.+|.+++|..+|.++|.-+|++...+....
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 99999999999999999999999999999999999997654444333
No 75
>KOG1125|consensus
Probab=99.13 E-value=1.4e-10 Score=118.20 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=112.3
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.++...-+|..|+-.++|+.|+++|+.||.. +|.+..+|..+|.++..-.+..+||..|++||+
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v----------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQV----------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhc----------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 4566788999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHhhHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----------DQQILKEIAFVRKQMRHHL 411 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~----------n~~a~~~l~~i~~~l~~~~ 411 (426)
|.|.++.++|++|.+++.+|.|.+|+++|-.||.+.+. +..+|..|+.+...+++.+
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999999999999999999876 2358888988888877766
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.13 E-value=1.8e-10 Score=111.79 Aligned_cols=126 Identities=21% Similarity=0.211 Sum_probs=106.4
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..|...|..+.+.|++++|+..|++|+++ +|.+..+...++.++..+|+++++.+.+....
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL----------------DPDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 46778999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+..|.++..+..+|.++..+|++++|+..|++++..+|+|+.++..++.++...|+.+++..
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 98899999999999999999999999999999999999999999999999999999998875
No 77
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.11 E-value=1.4e-09 Score=118.00 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=86.4
Q ss_pred HHHHhccchhhhhhhHHH----HHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 277 RTIKNSGNEYFKLNRMHD----AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~----Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
..+..+|..++..|++++ |+..|++++++ +|.+..++.++|.++.+.|++++|+..++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF----------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555666666666653 56666666655 7777777777777777777777777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+.++|+++.+++.+|.++..+|++++|+..|++++..+|++..+...++.++..+++.+++..
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777777777777777777777777777777776666666666677777666654
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=1.9e-09 Score=101.55 Aligned_cols=110 Identities=16% Similarity=0.255 Sum_probs=99.4
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLC 349 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~ 349 (426)
...+..++..|..++..|+|++|+..|.+++.. .|.+ ..+++.+|.++++++++++|+..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~ 93 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR----------------YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAA 93 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCchhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 446788999999999999999999999999998 5554 468899999999999999999999
Q ss_pred HHHHHhCCCCHH---HHHHHHHHHHHc--------CChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 350 DDILLMEPNNVK---ALFRRGRAQVSM--------NNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 350 ~~AL~ldp~~~k---al~~lg~a~~~l--------g~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
+++++..|+++. +++.+|.++..+ |++++|++.|++++..+|++..+..
T Consensus 94 ~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 94 DRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 999999998876 799999999887 8899999999999999999976543
No 79
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.10 E-value=2.4e-10 Score=90.38 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~ 365 (426)
.+++|+.|+..|.++++. .|. +..+++++|.|++++|+|++|+..+++ ++.+|.+...++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~----------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL----------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH----------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHH
Confidence 368999999999999998 442 677888999999999999999999999 9999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q psy6102 366 RGRAQVSMNNFEQGLQDYEQA 386 (426)
Q Consensus 366 lg~a~~~lg~~~~Al~~l~kA 386 (426)
+|.|+..+|++++|++.|++|
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 999999999999999999876
No 80
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.10 E-value=1.6e-09 Score=117.39 Aligned_cols=124 Identities=11% Similarity=0.068 Sum_probs=113.6
Q ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhC
Q psy6102 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR----AINLCDDILLME 356 (426)
Q Consensus 281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~----Ai~~~~~AL~ld 356 (426)
..+..+...|++++|+..|.++++. .|.+..++.++|.++.++|++++ |+..|+++++++
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~----------------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALAR----------------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 4466778888899999999998887 89999999999999999999996 899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
|+++.++..+|.++..+|++++|+..++++++++|++..++..++.++...++.+++... |.++
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-l~~a 344 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-FVQL 344 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999988753 4443
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.10 E-value=1.3e-09 Score=101.93 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=118.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
....+...|...+..|+|..|+..+.+|..+ .|.+.++|..+|.+|.++|++++|...|.++++
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL----------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 3445666999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+.|.++.++.++|..|...|+++.|...+..+...-+.+..+..++..+....++..++++
T Consensus 163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999999999999999999999999999988999999999999999999888764
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.08 E-value=3.1e-09 Score=93.22 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=93.1
Q ss_pred hcC-cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 320 HFR-SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 320 ~~~-p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
.+. +...+..+.+|..++..|++++|...|+.++.+||.+...|+++|.|+..+|+|++|+..|.+|+.++|+|+....
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 346 7788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHh
Q psy6102 399 EIAFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 399 ~l~~i~~~l~~~~~a~k~~~~k 420 (426)
+++.|+..+++...+.+ .|+.
T Consensus 108 ~ag~c~L~lG~~~~A~~-aF~~ 128 (157)
T PRK15363 108 AAAECYLACDNVCYAIK-ALKA 128 (157)
T ss_pred HHHHHHHHcCCHHHHHH-HHHH
Confidence 99999999999988765 4443
No 83
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.06 E-value=2.3e-09 Score=117.90 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=107.7
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...+..+|..+...|++++|+..|+++++. .|.++.++.++|.++.+.|+ .+|+..+++++.+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK----------------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 445566667777777777777777777766 78888889999999999998 8899999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
.|+++..+..+|.++..+|++++|++.|+++++++|.++.+...+..++...++.+++.. .+++|.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 898 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK-ELDKLL 898 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHh
Confidence 999999999999999999999999999999999999999999999999999988888765 555554
No 84
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=5.9e-10 Score=83.51 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=61.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~ 394 (426)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999985
No 85
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=3.1e-09 Score=95.26 Aligned_cols=108 Identities=18% Similarity=0.093 Sum_probs=92.2
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..+...|..++..++|++|+..|.+|+.+.+. .+..+.++.++|.++..+|++++|+..|.+++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999999999999988210 12245699999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHHhCCCcH
Q psy6102 354 LMEPNNVKALFRRGRAQV-------SMNNFE-------QGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~-------~lg~~~-------~Al~~l~kAl~l~P~n~ 394 (426)
.++|.+..+++++|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999 777766 56666667788888654
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.05 E-value=4.2e-09 Score=99.18 Aligned_cols=130 Identities=12% Similarity=0.129 Sum_probs=112.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchH---HHHHHHHHHHHHc--------cCHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT---AALLNMAAVQLKF--------KAYK 343 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~---~~~~nlA~~~~~l--------g~~~ 343 (426)
....++.+|..+++.+++++|+..|.++++. .|.+. .+++.+|.++.++ ++++
T Consensus 69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 132 (235)
T TIGR03302 69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----------------HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAR 132 (235)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------------CcCCCchHHHHHHHHHHHHHhcccccCCHHHHH
Confidence 3457889999999999999999999999998 55444 4799999999987 8999
Q ss_pred HHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Q psy6102 344 RAINLCDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFV 403 (426)
Q Consensus 344 ~Ai~~~~~AL~ldp~~~kal-----------------~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~l~~i 403 (426)
+|++.+++++..+|++..++ +.+|.+++..|++.+|+..|++++...|++ ..++..++.+
T Consensus 133 ~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 133 EAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred HHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 99999999999999986542 467889999999999999999999997764 5899999999
Q ss_pred HHHHhhHHHHHHHHHHhh
Q psy6102 404 RKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 404 ~~~l~~~~~a~k~~~~k~ 421 (426)
+..+++.+++.. .+..+
T Consensus 213 ~~~lg~~~~A~~-~~~~l 229 (235)
T TIGR03302 213 YLKLGLKDLAQD-AAAVL 229 (235)
T ss_pred HHHcCCHHHHHH-HHHHH
Confidence 999999998875 44443
No 87
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=5e-09 Score=103.64 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=109.1
Q ss_pred HHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCH--HHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY--KRAINLCDD 351 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~--~~Ai~~~~~ 351 (426)
....|..+|..+...+ ++++|+..+.++++. +|.+..+|.+++.++.+++.. ++++..+++
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----------------npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED----------------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----------------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 5667888888888888 689999999999999 999999999999999999974 788999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
+|+++|+|..+|..++.++..++++++|++++.++|+++|.|..++.....+...+
T Consensus 134 al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999887665
No 88
>KOG0624|consensus
Probab=99.04 E-value=1.4e-08 Score=98.05 Aligned_cols=200 Identities=12% Similarity=0.138 Sum_probs=152.3
Q ss_pred hhhhhchhhhhHhhhcchHHHhh-hccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchhhCCcccccch
Q psy6102 193 EAKHYYNQGALEKKRGITEHKKK-LETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQ 271 (426)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~~~~~P~~~i~ 271 (426)
...|+..+..+.....+..++.. .-+..|+|. -|.++.+.-. -|..+|+-..++.-++.+..+.+
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~---~Y~aifrRaT-~yLAmGksk~al~Dl~rVlelKp---------- 103 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPN---NYQAIFRRAT-VYLAMGKSKAALQDLSRVLELKP---------- 103 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---hHHHHHHHHH-HHhhhcCCccchhhHHHHHhcCc----------
Confidence 35688888888888888888888 466666654 3455554433 56777776655554544444333
Q ss_pred hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc---------------------------------chhhhh
Q psy6102 272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS---------------------------------QSKTQQ 318 (426)
Q Consensus 272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~---------------------------------~~~~~~ 318 (426)
+..-+..++|+++.++|.+++|+..|.+.|..-+..... ......
T Consensus 104 --DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 104 --DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred --cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 244556788999999999999999998888743211111 012345
Q ss_pred hhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 319 ~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
.+..|=++.++..||.||...|+...||.++..|-+|..++.+++|.++.+++..|+.+.++...+.+|+++|+++...-
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHHHHHHHh
Q psy6102 399 EIAFVRKQMR 408 (426)
Q Consensus 399 ~l~~i~~~l~ 408 (426)
....+.+..+
T Consensus 262 ~YKklkKv~K 271 (504)
T KOG0624|consen 262 FYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 89
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.03 E-value=8.2e-09 Score=104.23 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=99.3
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
+..+..+|..+++.+++++|+..|.++++. .|....++..+|.++.+.|++++|++.+++++..
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAA----------------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhH----------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667888888889999999999998887 7777788888888888888888888888888888
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 356 EPNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 356 dp~~-~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+|.+ ..++..++.+|..+|++++|+..+++++++.|+...+ ..+..++...++.+++.+
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQA 303 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHH
Confidence 8876 4567788888888888888888888888888877554 677777777777777664
No 90
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.02 E-value=1.1e-08 Score=117.89 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=95.7
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~ 358 (426)
....|..+++.|++++|+..|++++++ +|.+..++..+|.++...|++++|++.|+++++++|+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV----------------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 345678888888888888888888888 7788888888888888888888888888888888888
Q ss_pred CHHHHHHHHHH------------------------------------------HHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102 359 NVKALFRRGRA------------------------------------------QVSMNNFEQGLQDYEQALDLLPNDQQI 396 (426)
Q Consensus 359 ~~kal~~lg~a------------------------------------------~~~lg~~~~Al~~l~kAl~l~P~n~~a 396 (426)
+..++..++.+ +...|++++|++.|+++++++|+++.+
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 77766544433 345688888888888888888888888
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q psy6102 397 LKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 397 ~~~l~~i~~~l~~~~~a~k 415 (426)
...++.++...++.+++..
T Consensus 498 ~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777764
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=2.6e-09 Score=98.24 Aligned_cols=124 Identities=19% Similarity=0.125 Sum_probs=88.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
....|..++..|.+.|+.+.|-+.|.+|+.+ +|.+.++++|.|.-++..|+|++|...+.+|+.
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSL----------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 4566777777777777777777777777777 777777777777777777777777777777774
Q ss_pred hC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 355 ME--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 355 ld--p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
.- +..++.|-++|.|-+..|+++.|.++|+++|+++|+++.+...+...+...+++-++.
T Consensus 132 ~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 132 DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 32 3456677777777777777777777777777777777777777777666666665553
No 92
>KOG2076|consensus
Probab=99.00 E-value=9.8e-09 Score=109.32 Aligned_cols=142 Identities=11% Similarity=0.178 Sum_probs=127.3
Q ss_pred CcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH
Q psy6102 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343 (426)
Q Consensus 264 ~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~ 343 (426)
+.|.........+..+..+||.+|..|++++|...+.++|+. +|.+..+|+.+|.+|.++|+.+
T Consensus 127 ~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------------dp~~~~ay~tL~~IyEqrGd~e 190 (895)
T KOG2076|consen 127 RRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------------DPRNPIAYYTLGEIYEQRGDIE 190 (895)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CccchhhHHHHHHHHHHcccHH
Confidence 344444444556889999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 344 ~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
+|+...-.|-.++|.+.+.|.+++.....+|.+.+|+-+|.+|++.+|.+.........++..+|+...+.. .|.++|
T Consensus 191 K~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~ 268 (895)
T KOG2076|consen 191 KALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLL 268 (895)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888764 555554
No 93
>KOG1173|consensus
Probab=99.00 E-value=4.3e-09 Score=107.16 Aligned_cols=123 Identities=18% Similarity=0.301 Sum_probs=108.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..+.++|.++|..+.|.+|+.+|+.++..++.... -.+.....+.|+|.++.+++.+++||.+++++|.
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~---------e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN---------EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc---------cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566899999999999999999999999966433221 1235677899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
+.|.++.++-.+|.+|..+|+++.|+++|.+||.+.|+|..+...|+.+...
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888888876655
No 94
>PLN02789 farnesyltranstransferase
Probab=99.00 E-value=9.5e-09 Score=101.66 Aligned_cols=121 Identities=10% Similarity=0.063 Sum_probs=109.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHH
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNVKAL 363 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~ldp~~~kal 363 (426)
.+...+.+++|+..+.++|++ +|.+..+|..++.++..++ .+++|+..++++++.+|++..+|
T Consensus 46 ~l~~~e~serAL~lt~~aI~l----------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL----------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 356677899999999999999 9999999999999999999 68999999999999999999999
Q ss_pred HHHHHHHHHcCCh--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 364 FRRGRAQVSMNNF--EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 364 ~~lg~a~~~lg~~--~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
+.++.++..+++. ++++.+++++++++|+|..++...+.+...+++++++-. .+.+++
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~-~~~~~I 169 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE-YCHQLL 169 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Confidence 9999999999874 789999999999999999999999999999998876643 444443
No 95
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.99 E-value=7e-09 Score=114.06 Aligned_cols=126 Identities=27% Similarity=0.400 Sum_probs=108.5
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..+...|..++..|++++|+..|.++++. +|.+..++..+|.+++..|++++|+..+++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAI----------------DPRSLYAKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35677889999999999999999999999988 77888888888888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+.+|.+..+++.+|.++...|++++|+..|++++.++|.+..++..+..++...++.+++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888887777776654
No 96
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.99 E-value=7.4e-09 Score=114.28 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=114.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..+..+|..+...|++.+|+..|++++++ +|.+..++..+|.++...|++++|+..++++++
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSL----------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566889999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
.+|+++. ++.+|.++...|++++|+..|+++++++|++..+...++.++...+..+++.
T Consensus 112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 9999999 9999999999999999999999999999999999999998887766666544
No 97
>KOG1125|consensus
Probab=98.99 E-value=2.7e-09 Score=108.95 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=129.6
Q ss_pred hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc--------------------------------------
Q psy6102 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-------------------------------------- 312 (426)
Q Consensus 271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-------------------------------------- 312 (426)
+.++.+++|..+|.+....++=..||..+.+|+++-+.....
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~ 393 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAG 393 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccC
Confidence 344578999999999999999999999999999852111110
Q ss_pred ---------------------chhhhhhhcCc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102 313 ---------------------QSKTQQKHFRS--YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 369 (426)
Q Consensus 313 ---------------------~~~~~~~~~~p--~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a 369 (426)
...-++....| .++++...||..|.-.++|++|+.+|+.||..+|++...|.++|.+
T Consensus 394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence 00122223345 7889999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 370 QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 370 ~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
+..-.+.++|+..|++|++|.|....++.+++.....+|.+++|.++.+..+
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887654
No 98
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.99 E-value=1.8e-08 Score=101.83 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAFVR 404 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n-~~a~~~l~~i~ 404 (426)
..++.++|.++.+.+++++|+..++++++++|++..+++.+|.++...|++++|++.|++++..+|.+ ..++..+..++
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 34677888888889999999999999998889888899999999999999999999999998888876 45677788888
Q ss_pred HHHhhHHHHHHHHHHhh
Q psy6102 405 KQMRHHLNLEKMTYARM 421 (426)
Q Consensus 405 ~~l~~~~~a~k~~~~k~ 421 (426)
...++.+++.. .++++
T Consensus 260 ~~~g~~~~A~~-~l~~~ 275 (389)
T PRK11788 260 QALGDEAEGLE-FLRRA 275 (389)
T ss_pred HHcCCHHHHHH-HHHHH
Confidence 88888887765 44444
No 99
>KOG0553|consensus
Probab=98.96 E-value=4.2e-09 Score=100.32 Aligned_cols=96 Identities=18% Similarity=0.305 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
++-+-+-|.-+++.++|.+|+..|++||+++|.++-.|-+||.+|..+|.|+.|+++++.|+.+||....++..|+.++.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHhhh
Q psy6102 406 QMRHHLNLEKMTYARMF 422 (426)
Q Consensus 406 ~l~~~~~a~k~~~~k~f 422 (426)
.+++++++... |+|-+
T Consensus 161 ~~gk~~~A~~a-ykKaL 176 (304)
T KOG0553|consen 161 ALGKYEEAIEA-YKKAL 176 (304)
T ss_pred ccCcHHHHHHH-HHhhh
Confidence 99999999886 77754
No 100
>KOG0550|consensus
Probab=98.96 E-value=5.4e-09 Score=102.99 Aligned_cols=142 Identities=12% Similarity=0.110 Sum_probs=124.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+.+++-+|..++-..+.+.|+.+|+++|.+-|.... ....-..|.-...+..+|.-.++.|.|..|.++|..||.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~----sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK----SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhh----HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 6788999999999999999999999999998543321 122223566778899999999999999999999999999
Q ss_pred hCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102 355 MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 355 ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k 420 (426)
+||++ ++.|.++|.++..+|+..+|+.+++.|+.|+|....++...+.|+..+++.+++.+..-+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99976 7789999999999999999999999999999999999999999999999999988754443
No 101
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.93 E-value=1.3e-08 Score=117.15 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=94.5
Q ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q psy6102 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 360 (426)
Q Consensus 281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ 360 (426)
.+|..++..|++++|+..|+++++. +|.+..++..+|.+++++|++++|+..++++++++|++.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA----------------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 4588899999999999999999998 788888888888888888888888888888888887654
Q ss_pred H--------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 361 K--------------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 361 k--------------al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
. .+..+|.++...|++++|+..|+++++++|++..++..++.++...++.+++.+
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 123456677777788888888888888888777777777777777777777664
No 102
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.92 E-value=2.5e-08 Score=95.99 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=98.7
Q ss_pred HHHHHhccchh-hhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEY-FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLCDD 351 (426)
Q Consensus 276 a~~~~~~G~~~-f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~~~ 351 (426)
...++..+..+ ++.++|++|+..|++.+.. .|.. +.+++.+|.+|+..|++++|+..|.+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~----------------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~ 205 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKK----------------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS 205 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45667777776 6679999999999999998 5554 68999999999999999999999999
Q ss_pred HHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 352 ILLMEPN---NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 352 AL~ldp~---~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
+++..|+ .+++++.+|.++..+|++++|+..|+++++..|++..+......+
T Consensus 206 vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 206 VVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999887 488999999999999999999999999999999998776655544
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=3.3e-08 Score=99.61 Aligned_cols=135 Identities=11% Similarity=0.041 Sum_probs=123.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
....+|..+..++..++++.|...+...+.. .|.|+.++..++.++++.++..+|++.+++++.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA----------------QPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 4456777888888888888888888887777 899999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCC
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 425 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~~ 425 (426)
++|+..-..+++|.+|+..|++.+|+..++..+.-+|+|+..|..|++.+..+++..++....-+.+|-++
T Consensus 369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999988877766666554
No 104
>KOG4555|consensus
Probab=98.89 E-value=2.9e-08 Score=83.69 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=94.2
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
++....+-..|..+-..|+.+.|++.|.+||.+ -|..+++|.|+|.++.-.|+.++|+.++++|
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l----------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCL----------------APERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----------------cccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 456677888899999999999999999999999 8999999999999999999999999999999
Q ss_pred HHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102 353 LLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391 (426)
Q Consensus 353 L~ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P 391 (426)
+++.... -.++..+|.+|..+|+-+.|..+|+.|-++-.
T Consensus 104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 9997655 34799999999999999999999999988854
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=3.9e-08 Score=106.41 Aligned_cols=104 Identities=7% Similarity=-0.051 Sum_probs=99.1
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+.+....+..+++.+.+++|+..+.++++. +|++..+++.+|.++.++|+|++|+..|++++.
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSG----------------GSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 6778899999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~ 394 (426)
.+|++.+++..+|.++..+|+.++|...|++|+.....-.
T Consensus 183 ~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 183 QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999999999999999999999865443
No 106
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.88 E-value=1e-08 Score=78.37 Aligned_cols=71 Identities=24% Similarity=0.490 Sum_probs=66.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 333 A~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
..+|++.++|++|++++++++.++|+++.+|+.+|.++..+|++++|+++|++++++.|++..+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999999999999999999887766543
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=5.8e-08 Score=74.91 Aligned_cols=89 Identities=24% Similarity=0.452 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
+++++|.++...|++++|+..+++++++.|.+..+++.+|.++...+++++|++.|++++.+.|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q psy6102 408 RHHLNLEKM 416 (426)
Q Consensus 408 ~~~~~a~k~ 416 (426)
++.+++...
T Consensus 82 ~~~~~a~~~ 90 (100)
T cd00189 82 GKYEEALEA 90 (100)
T ss_pred HhHHHHHHH
Confidence 998877653
No 108
>KOG4162|consensus
Probab=98.86 E-value=1.3e-08 Score=106.90 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=90.7
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH--HHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN--LCDDI 352 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~--~~~~A 352 (426)
.+..|+..|..+..+|++.+|...|..|+.+ +|+.+.+...+|.|+++.|+..-|.. .+..+
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l----------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALAL----------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc----------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 5667888888888888888888888888888 88888888888888888888877777 88888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102 353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~ 395 (426)
+++||.+.++||.+|.++..+|+.++|.++|+.|+++++.+|.
T Consensus 747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8888888888888888888888888888888888888887763
No 109
>KOG2003|consensus
Probab=98.86 E-value=1.6e-08 Score=100.44 Aligned_cols=128 Identities=22% Similarity=0.239 Sum_probs=118.3
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+.++.+.||..|..|++++|.+.|.+||.- +.....+++|+|..+-.+|+.++|++++-+.-.
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~n----------------dasc~ealfniglt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNN----------------DASCTEALFNIGLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcC----------------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence 4567889999999999999999999999987 788899999999999999999999999988777
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 418 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~ 418 (426)
+--+++++++.++.+|..+.+..+|++.|-++..+-|.++.++..|+.++.+.++..++..--|
T Consensus 553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 7778999999999999999999999999999999999999999999999999998888765433
No 110
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.85 E-value=7e-09 Score=77.61 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=60.2
Q ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
+.+|..+++.|+|++|+..|+++++. .|.+..+++.+|.|+.++|++++|+..++++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ----------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35788999999999999999999998 89999999999999999999999999999999999987
Q ss_pred H
Q psy6102 360 V 360 (426)
Q Consensus 360 ~ 360 (426)
+
T Consensus 65 p 65 (65)
T PF13432_consen 65 P 65 (65)
T ss_dssp H
T ss_pred C
Confidence 5
No 111
>KOG1128|consensus
Probab=98.81 E-value=2.3e-08 Score=104.62 Aligned_cols=131 Identities=13% Similarity=0.223 Sum_probs=121.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+.+.+..|+..+.+++|.+|.++++.++++ +|.....|+++|.|.+++++++.|.++|...+.
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEI----------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhc----------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 4556778888889999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
++|++.++|.+++.+|..+++-.+|...++.|++.+-++..++.+.-.+...++..+++.+ +|.++.
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~-A~~rll 614 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK-AYHRLL 614 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888866 555543
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.80 E-value=6.4e-08 Score=97.43 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
+...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.++++|+.++|++..++..++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q psy6102 409 HHLNLEKMT 417 (426)
Q Consensus 409 ~~~~a~k~~ 417 (426)
++.++....
T Consensus 85 ~~~eA~~~~ 93 (356)
T PLN03088 85 EYQTAKAAL 93 (356)
T ss_pred CHHHHHHHH
Confidence 999887643
No 113
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.79 E-value=4.2e-08 Score=95.16 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=101.0
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...+......+...++++++...+.++..... .+.++.+|..+|.++.+.|++++|+.++++||++
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34455666678888999999999998775410 3678899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT 417 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~ 417 (426)
+|++..++..++.++...|+++++.+.++......|.++..+..++.++..+++.+++....
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 99999999999999999999999999999999988999999999999999999999887533
No 114
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.79 E-value=1.9e-08 Score=75.79 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=62.8
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
+++.|+|++|++.+++++..+|++.++++.+|.||...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999999999999999999999998888777654
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=8.7e-08 Score=89.80 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=114.1
Q ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
....+.++..|+-+.+..+..+++.. .|.+..+..-+|...++.|+|.+|+..+.++..++|++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----------------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA----------------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc----------------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 55666666677777777777776665 78888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 423 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~ 423 (426)
.++|.-+|.+|..+|++++|...|.+|+++.|.++.+..+++..+..-++.+.+++.+...+.+
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999877765543
No 116
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=1.1e-07 Score=85.28 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=93.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q psy6102 282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-- 359 (426)
Q Consensus 282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~-- 359 (426)
..+.+|-..+|..+...+...++... ......+|+++|.++..++++++|+..+.+++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTS--------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccccccchhhhhHhccCCc--------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence 34566667777777777755544310 23457789999999999999999999999999998763
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 360 -VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 360 -~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
+.+|+++|.++..+|++++|+.+|++|+.++|.+...+..++.++..++
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999988888333
No 117
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7e-08 Score=92.44 Aligned_cols=116 Identities=23% Similarity=0.276 Sum_probs=104.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDD 351 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~ 351 (426)
.++-|..+|..|+..+++..|...|.+|+++ .|.++.++..+|.+++... .-.++...+++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL----------------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL----------------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 6788999999999999999999999999999 9999999999999998764 57789999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
+|++||.+..+++.+|..++..|+|.+|+..|++.+++.|.+..-...++.....
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876555555444433
No 118
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.77 E-value=3.3e-07 Score=87.33 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=102.2
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..++..|..++..|+|++|+..|++++...+. .+.-..+.+.+|.+++++++|.+|+..+++.++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5677899999999999999999999999998321 233344569999999999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHHcC---------------C---hHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhH
Q psy6102 355 MEPNN---VKALFRRGRAQVSMN---------------N---FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHH 410 (426)
Q Consensus 355 ldp~~---~kal~~lg~a~~~lg---------------~---~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~ 410 (426)
+.|++ ..++|.+|.++..++ | ..+|+..|++.++..|+.. ++...+..+...+.++
T Consensus 98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 99877 668999999975554 1 2568899999999999985 5666666666666655
Q ss_pred HHHH
Q psy6102 411 LNLE 414 (426)
Q Consensus 411 ~~a~ 414 (426)
+-..
T Consensus 178 e~~i 181 (243)
T PRK10866 178 ELSV 181 (243)
T ss_pred HHHH
Confidence 5433
No 119
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.76 E-value=1.1e-07 Score=84.81 Aligned_cols=109 Identities=24% Similarity=0.343 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHH
Q psy6102 292 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILLMEPNNVK 361 (426)
Q Consensus 292 y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~----------~~~Ai~~~~~AL~ldp~~~k 361 (426)
|+.|.+.|...+.. +|.++..+++=|.+++.+.+ +++|+.-+++||.++|+..+
T Consensus 7 FE~ark~aea~y~~----------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK----------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHh----------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 66788888887777 99999999999999988744 57788999999999999999
Q ss_pred HHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 362 ALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 362 al~~lg~a~~~lg~-----------~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
|++.+|.+|..++. |++|..+|++|...+|+|...+..|....+.=.-+.+.+|+
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~ 136 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988765 78899999999999999999999988887655555554443
No 120
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.75 E-value=1.2e-07 Score=81.81 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=99.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..++..|...++.|+|.+|++.|+......+. .+....+.+.++.+|++.++|.+|+..+++-|+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4678999999999999999999999988876443 566678999999999999999999999999999
Q ss_pred hCCCCH---HHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102 355 MEPNNV---KALFRRGRAQVSMNN---------------FEQGLQDYEQALDLLPNDQQILKEI 400 (426)
Q Consensus 355 ldp~~~---kal~~lg~a~~~lg~---------------~~~Al~~l~kAl~l~P~n~~a~~~l 400 (426)
|+|.++ -|+|.+|.+++.+.. ...|+..|++.++..|++.-+....
T Consensus 76 LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 76 LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 999885 489999999999987 8899999999999999998665443
No 121
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.75 E-value=3.4e-08 Score=99.73 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=67.9
Q ss_pred hhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA---LFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 319 ~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka---l~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
...+|.++.+++|+|.+|+++|+|++|+..|++||+++|++.++ ||++|.||..+|++++|+++|++|+++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999999999965 999999999999999999999999998
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.74 E-value=3.2e-07 Score=85.05 Aligned_cols=126 Identities=18% Similarity=0.264 Sum_probs=100.1
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..++..|..+++.|+|.+|+..|++.+...+. .+.-..+.+.+|.++++.++|.+|+..+++.++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988554 567788999999999999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhHHHH
Q psy6102 355 MEPNN---VKALFRRGRAQVSMN-----------NFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 355 ldp~~---~kal~~lg~a~~~lg-----------~~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~~~a 413 (426)
..|++ ..++|.+|.+++.+. ...+|+..|+..+...|+++ .+...+..+...+.+++-.
T Consensus 71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 569999999976653 34589999999999999985 5556666666655555433
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.71 E-value=3.3e-07 Score=76.00 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKE 399 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~ 399 (426)
+..++.+|..+++.|++++|+..|.+++...|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578999999999999999999999999999887 6899999999999999999999999999999986 678999
Q ss_pred HHHHHHHHhhHHHHHH
Q psy6102 400 IAFVRKQMRHHLNLEK 415 (426)
Q Consensus 400 l~~i~~~l~~~~~a~k 415 (426)
++.++..+++..++.+
T Consensus 82 ~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 82 LGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHHhCChHHHHH
Confidence 9999999999888775
No 124
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.71 E-value=3e-07 Score=101.60 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=107.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF 364 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~ 364 (426)
++.-.|++++|+..|.+++.. +|....++.++|.++...|++++|+..++++|+++|.++.+++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~----------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVH----------------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 445678899999999999987 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
.+|.++...|++++|+..++++++.+|++.. +..++.++...++.+++..
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999 9999999999999988865
No 125
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.70 E-value=2.3e-07 Score=102.17 Aligned_cols=146 Identities=10% Similarity=0.010 Sum_probs=89.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------ch-------hhhhhhcCcchHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQ 336 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~-------~~~~~~~~p~~~~~~~nlA~~~ 336 (426)
.+...+..+...+++|+|..|+..|.++++..+..... .. .+....-.|.....+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45578889999999999999999999999874443200 00 1111111223333333335577
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
..+|+|++|++.|+++++++|+++.+++.++.++...++.++|++.++++...+|.+... ..+..+...+++..+ .-.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHH
Confidence 777777777777777777777777777777677777777777777777777777765554 334444433333333 333
Q ss_pred HHHhhh
Q psy6102 417 TYARMF 422 (426)
Q Consensus 417 ~~~k~f 422 (426)
.+++++
T Consensus 191 ~~ekll 196 (822)
T PRK14574 191 ASSEAV 196 (822)
T ss_pred HHHHHH
Confidence 444444
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.68 E-value=2.1e-07 Score=83.75 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=82.3
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
.+....+++++|.++...|++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..|++++.++|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 56778899999999999999999999999999988764 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHH
Q psy6102 399 EIAFVRKQMRHHL 411 (426)
Q Consensus 399 ~l~~i~~~l~~~~ 411 (426)
.++.++..+++..
T Consensus 111 ~lg~~~~~~g~~~ 123 (172)
T PRK02603 111 NIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHcCChH
Confidence 9999998877643
No 127
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.66 E-value=8.1e-08 Score=72.30 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=62.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365 (426)
Q Consensus 286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~ 365 (426)
+++.|+|++|+..|++++.. .|.+..++..+|.|+++.|++++|...+++++..+|+++.++.-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 46789999999999999999 99999999999999999999999999999999999999888877
Q ss_pred HHHH
Q psy6102 366 RGRA 369 (426)
Q Consensus 366 lg~a 369 (426)
++.+
T Consensus 65 ~a~i 68 (68)
T PF14559_consen 65 LAQI 68 (68)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
No 128
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.65 E-value=1.2e-07 Score=72.32 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=65.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 362 (426)
Q Consensus 283 G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka 362 (426)
...|++.++|++|+.++++++.+ +|.++.+|..+|.|+.++|++.+|+++++++++++|++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL----------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh----------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 46789999999999999999999 99999999999999999999999999999999999999988
Q ss_pred HHHHHH
Q psy6102 363 LFRRGR 368 (426)
Q Consensus 363 l~~lg~ 368 (426)
...+++
T Consensus 66 ~~~~a~ 71 (73)
T PF13371_consen 66 RALRAM 71 (73)
T ss_pred HHHHHh
Confidence 777664
No 129
>KOG1308|consensus
Probab=98.63 E-value=1.9e-08 Score=97.30 Aligned_cols=105 Identities=24% Similarity=0.256 Sum_probs=97.5
Q ss_pred hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 350 (426)
Q Consensus 271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~ 350 (426)
+....+...+-.+..++..|.+++||+.|..||.+ +|....+|..+|.++++++.+..|+.+|.
T Consensus 109 e~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------------np~~a~l~~kr~sv~lkl~kp~~airD~d 172 (377)
T KOG1308|consen 109 EMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL----------------NPPLAILYAKRASVFLKLKKPNAAIRDCD 172 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhccccccccc----------------CCchhhhcccccceeeeccCCchhhhhhh
Confidence 33445667777888888999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102 351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391 (426)
Q Consensus 351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P 391 (426)
.|+.++|+..+.|-.+|.+...+|++++|..++..|++++-
T Consensus 173 ~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 173 FAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred hhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999874
No 130
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.63 E-value=4.4e-07 Score=86.02 Aligned_cols=115 Identities=12% Similarity=0.183 Sum_probs=102.8
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
+..+|+.+..+++.|+|..|...|..-|+-.|. .+..+.+++.||.+++.+|+|++|...|..+.+-
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN-------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 344899999999999999999999999987443 5677889999999999999999999999999998
Q ss_pred CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 356 EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 356 dp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
.|++ +++++.+|.|+..+|+.++|...|+++++-.|+...+......+
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 8766 67899999999999999999999999999999998877665444
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=3.7e-07 Score=100.10 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=108.8
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
...++..+...+...+++++|+.....+++. .|....+|+.+|.++++.+++.+|... .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE----------------HKKSISALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------CCcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 6677888889999999999999999999998 999999999999999999998888776 6776
Q ss_pred hCCCCH-------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 355 MEPNNV-------------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 355 ldp~~~-------------------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
+-+.+. .|++.+|.||-.+|++++|.+.|+++++++|+|+.+..+++..+... +.++|.
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 666665 89999999999999999999999999999999999999999999888 666554
No 132
>KOG2002|consensus
Probab=98.62 E-value=3.2e-07 Score=98.69 Aligned_cols=121 Identities=13% Similarity=0.203 Sum_probs=110.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..+.-+++.+|..|+|..+...+..|+.... ..+..+..++++|.+|..+|+|++|..+|.++++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE-------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 566788899999999999999999999998621 1566778899999999999999999999999999
Q ss_pred hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 355 MEPNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 355 ldp~~-~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
.+|++ .-+++.+|+.+...|+++.|+.+|+++++..|++.+....|+.++....
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 99998 8999999999999999999999999999999999999999999998874
No 133
>PRK11906 transcriptional regulator; Provisional
Probab=98.62 E-value=7.6e-07 Score=90.21 Aligned_cols=130 Identities=12% Similarity=-0.004 Sum_probs=111.5
Q ss_pred HHHhccchhhhh---hhHHHHHHHHHHHH---HHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc---------cCH
Q psy6102 278 TIKNSGNEYFKL---NRMHDAQRKYKKAV---RYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---------KAY 342 (426)
Q Consensus 278 ~~~~~G~~~f~~---g~y~~Ai~~y~kAl---~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l---------g~~ 342 (426)
.++.+|...+.+ ...+.|+.+|.+|+ ++ +|.++.+|..+|.|++.+ .+-
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l----------------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI----------------QTLKTECYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC----------------CcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 456666666443 35678888899999 66 999999999999999875 245
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 343 ~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
.+|++...+|++++|.++.|++.+|.++...++++.|...|++|+.++|+.+.++...+.+....|+.+++....-+.+-
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 67888999999999999999999999999999999999999999999999999999999999999999988876665444
Q ss_pred c
Q psy6102 423 Q 423 (426)
Q Consensus 423 ~ 423 (426)
-
T Consensus 401 L 401 (458)
T PRK11906 401 L 401 (458)
T ss_pred c
Confidence 3
No 134
>KOG1129|consensus
Probab=98.56 E-value=2.4e-07 Score=89.17 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=107.3
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQL 337 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~~ 337 (426)
+..+...+.++-..+++++|+++|+.++++.+..-++ ........+.-.++.+++|+|.|.+
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 3344555555666666666666666666543222221 0012223347788999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 338 KFKAYKRAINLCDDILLMEP---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 338 ~lg~~~~Ai~~~~~AL~ldp---~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
.-++++-++..+.+|+..-. .-+++||++|.+....||+..|..+|+-||..||++.+++.+|+-+..+.|+..++.
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence 99999999999999997643 448899999999999999999999999999999999999999999999988887764
No 135
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=7.4e-07 Score=81.48 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=104.5
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..++++|+.|=..|-+..|...|++++.+ .|..+.+++.+|..+..-|+|+.|.+.++.++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai----------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 36788999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l 400 (426)
++||.+--++.+||.+++--|+|.-|.+++.+-.+-||+|+--..++
T Consensus 127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 99999999999999999999999999999999999999998543333
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2e-06 Score=82.50 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=94.1
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l---g~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
+|.++.-|..+|.+|+.+++++.|...|.+|+++.|+|++.+..+|.+++.. ..-.+|...+++|+.+||.|..++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999998776 3457789999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102 399 EIAFVRKQMRHHLNLEKMTYARMFQN 424 (426)
Q Consensus 399 ~l~~i~~~l~~~~~a~k~~~~k~f~~ 424 (426)
.|+......+++.++.- .|++|.+.
T Consensus 232 lLA~~afe~g~~~~A~~-~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAA-AWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHH-HHHHHHhc
Confidence 99999999999998864 77777653
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.54 E-value=2e-06 Score=90.58 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=80.7
Q ss_pred HHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHhhcccc-----------------h---------hhhhhh--cCc
Q psy6102 275 VIRTIKNSGNEYFKL---NRMHDAQRKYKKAVRYIKWYNQSQ-----------------S---------KTQQKH--FRS 323 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~---g~y~~Ai~~y~kAl~~~~~~~~~~-----------------~---------~~~~~~--~~p 323 (426)
.+..++.+|..++.. +++..|+.+|++|+++-|.+.... . ...... .++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 566778888877654 458899999999999743322110 0 011111 245
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~ 395 (426)
..+.++.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 5566677777777777777777777777777777 4667777777777777777777777777777777663
No 138
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.53 E-value=1.7e-07 Score=72.69 Aligned_cols=67 Identities=25% Similarity=0.440 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld-------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
|.-+.++.++|.+|..+|+|++|+.++++++++. |.-+.+++++|.++..+|++++|++.+++|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4557899999999999999999999999999762 223778999999999999999999999999986
No 139
>KOG1173|consensus
Probab=98.53 E-value=1.1e-06 Score=89.97 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=91.9
Q ss_pred hhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP-------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 318 ~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp-------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
+..+.|.++-++..+|.+.+..+.|.+|+.+++.+|..-+ ...-.+.++|.++..++.+++|+.+|++||.+.
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 3344899999999999999999999999999999994321 234568999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 391 PNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 391 P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
|.+..+...++.++..+++.+.|.-..++.+-
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999988866665543
No 140
>KOG3060|consensus
Probab=98.53 E-value=2.4e-06 Score=79.86 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcc--------------c----chhhhhhhcCcchHHHHHHHHHHHHH
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ--------------S----QSKTQQKHFRSYYTAALLNMAAVQLK 338 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~--------------~----~~~~~~~~~~p~~~~~~~nlA~~~~~ 338 (426)
+.....|..+-..|+|++|+++|...|+-.|.... . ....+..+.-+.+.++|..+|.+|+.
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44556677777889999999999988874110000 0 00122333346666677777777777
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 339 lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg---~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
+++|++|.-++++.+-++|.++..+-++|.+++-+| ++.-|.++|.+|++++|.+..++..+-.+-..+-+...+
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 777777777777777777777666666666665554 344566667777777766666666666555555444333
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.52 E-value=3.1e-07 Score=72.45 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=70.6
Q ss_pred ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 339 FKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 339 lg~~~~Ai~~~~~AL~ldp~--~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
.++|+.|+..++++++.+|. +...++.+|.||+.+|+|++|+..+++ +..+|.+..+...++.++..+++++++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 577889999999999999999999999 889999999999999999999999999875
Q ss_pred H
Q psy6102 417 T 417 (426)
Q Consensus 417 ~ 417 (426)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 4
No 142
>KOG2076|consensus
Probab=98.51 E-value=2.8e-06 Score=90.96 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=107.4
Q ss_pred chhhccccHHHHHhhchhhCCcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc
Q psy6102 244 GCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS 323 (426)
Q Consensus 244 G~VieGldvl~~I~~l~~~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p 323 (426)
|+..+.+.++.++-+..+ .....|+.+|.+|-++|+.++|+..+..|-.+ +|
T Consensus 153 g~~eeA~~i~~EvIkqdp------------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----------------~p 204 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP------------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----------------NP 204 (895)
T ss_pred CCHHHHHHHHHHHHHhCc------------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----------------CC
Confidence 666666665555544322 25678999999999999999999999999888 99
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P 391 (426)
.+...|..+|....++|.+++|+-+|.+||+++|.+.+.+++++.+|..+|++..|...|.+++.+.|
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
No 143
>KOG4162|consensus
Probab=98.50 E-value=1.5e-06 Score=91.75 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=112.5
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
-..|...+..+...++-++|..+..+|-.+ .|.....|+.+|.++...|++.+|.+.|..|+.+
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~----------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKI----------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc----------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 445666777777777788888888888777 8999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQ--DYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~--~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
||+++.....+|.++...|+..-|.. .+..|++++|.|.++|..++.+.+..|+.+++.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 99999999999999999999988888 999999999999999999999999999998775
No 144
>KOG1840|consensus
Probab=98.49 E-value=1.7e-06 Score=90.11 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=113.3
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..+...|..|...++|.+|+..|++|+.+..... -...|..+..+.|+|.+|.+.|++++|..+|++|+
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~--------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF--------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 3455566799999999999999999999999853221 12368888999999999999999999999999999
Q ss_pred HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHhhHHHHHH
Q psy6102 354 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PND---QQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 354 ~ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-----P~n---~~a~~~l~~i~~~l~~~~~a~k 415 (426)
++- |.-...+..++.++..++++++|+..|++++++. ++| +.+..+++.++..+|+++++..
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 874 3346788999999999999999999999999863 333 5688999999999999999874
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=1e-06 Score=77.08 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=70.1
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.......+|..++..|++++|+..|++++...+. .+....+.+.+|.+++..|+|++|+..++. +.
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~ 112 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPD-------------PELKPLARLRLARILLQQGQYDEALATLQQ-IP 112 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-cc
Confidence 3456677788888888888888888888775100 122345677788888888888888888755 33
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl 387 (426)
-.+-.+.++..+|.+|..+|++++|+..|++||
T Consensus 113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 344556677778888888888888888888764
No 146
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.48 E-value=4.1e-07 Score=70.47 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=62.1
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..+..+|..++..|+|++|+.+|++|+++...... -.+..+.++.++|.|+..+|++++|++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---------DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35778999999999999999999999999998433321 134568899999999999999999999999999
Q ss_pred HhC
Q psy6102 354 LME 356 (426)
Q Consensus 354 ~ld 356 (426)
++.
T Consensus 74 ~i~ 76 (78)
T PF13424_consen 74 DIF 76 (78)
T ss_dssp HHH
T ss_pred hhh
Confidence 863
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=2.6e-06 Score=82.08 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAF 402 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n-~~a~~~l~~ 402 (426)
..+.+|+.+|..++...+.+.|+..+.+|++-||+++.|-..+|.+....|+|..|++.|+.+++.+|+. +++...|..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 4466899999999999999999999999999999999999999999999999999999999999999986 688999999
Q ss_pred HHHHHhhHHHHHHH
Q psy6102 403 VRKQMRHHLNLEKM 416 (426)
Q Consensus 403 i~~~l~~~~~a~k~ 416 (426)
|+..+++.++...-
T Consensus 258 ~Y~~lg~~~~~~~f 271 (389)
T COG2956 258 CYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHhCCHHHHHHH
Confidence 99999988876643
No 148
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=2e-06 Score=86.96 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=107.8
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
+.+..+-..+..+++.++..+|++.+++++.+ +|....++.++|.++++.|++.+|+..++..+
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALAL----------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 45667778899999999999999999999999 99999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
.-+|+++..|..+|++|..+|+..+|...+...+.+.-.-..+...+.....+.
T Consensus 402 ~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 402 FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999888887777777777666654
No 149
>KOG2002|consensus
Probab=98.47 E-value=8.5e-07 Score=95.49 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=110.0
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch-HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
.++.++.+|..+..+|+|++|-.+|.+++.. ++.+ .-.++.+|.+|++.|+++.|+.++.+++
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----------------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA----------------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------------CCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 5677999999999999999999999999998 6666 8889999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 354 LMEPNNVKALFRRGRAQVSMN----NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg----~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
+..|++.+.+.-+|.+|...+ ..+.|...+.++++..|.|.+++..++.++....
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 999999999999999999886 7789999999999999999999999999987643
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=6.8e-06 Score=71.77 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=102.0
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+...+......+..+++..+...+.+.+.-.+. .+.-..+.+.+|.+++..|++++|+..++.++.
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPS-------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444555555566677787777777777665111 223377889999999999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102 355 MEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA 419 (426)
Q Consensus 355 ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~ 419 (426)
..|+. ..+.+++|.+++.+|++++|+..++. +.-.+-.+.+...++.++...++.+++.. .|+
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~-~y~ 142 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA-AYQ 142 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH-HHH
Confidence 87665 56899999999999999999999976 34455667899999999999999998865 443
No 151
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.45 E-value=2.2e-06 Score=94.54 Aligned_cols=125 Identities=12% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...+...|..+...|+|++|+..|+++++. +|.++.++..++.++...+++++|++.+++++.+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~----------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK----------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 455666788899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT 417 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~ 417 (426)
+|.+... ..++.++..++++.+|++.|+++++++|++.++...+-.+....+-...+.+.+
T Consensus 166 dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 166 DPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9996555 555666666888878999999999999999999999988888887776555433
No 152
>KOG1128|consensus
Probab=98.45 E-value=5e-07 Score=94.76 Aligned_cols=120 Identities=14% Similarity=0.201 Sum_probs=101.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q psy6102 282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 361 (426)
Q Consensus 282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~k 361 (426)
....|.-.||...--.+|++|+++. +..+..+...+|...+..++|++|.++++..++++|-...
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawEls---------------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~ 520 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELS---------------NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG 520 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHh---------------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh
Confidence 4445555555555666777777763 3344556677777778889999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 362 al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
.||.+|.|...++++..|.++|..++.++|++.+++.++...+..+++..++-+.
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887653
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=3.8e-06 Score=71.08 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHH
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQILKEI 400 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~---n~~a~~~l 400 (426)
.+.+++|.++-.+|+.++|+..|++++....+. ..+++.+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 478999999999999999999999999976444 679999999999999999999999999999898 88899999
Q ss_pred HHHHHHHhhHHHHHHHHHHh
Q psy6102 401 AFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 401 ~~i~~~l~~~~~a~k~~~~k 420 (426)
..++..+++.+++...++..
T Consensus 82 Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999988766553
No 154
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.43 E-value=7.2e-06 Score=84.14 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=109.1
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
+.+......|...+..|+|+.|.+...++.+. .|.....+...|.++.++|+++.|.+++.++.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADH----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35677788999999999999999999998887 67777788888899999999999999999999
Q ss_pred HhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 354 LMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 354 ~ldp~~~-kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+..|++. .+....+.++...|+++.|++.++..++..|+++.+...+..++...++.+++.+
T Consensus 146 ~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 146 ELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred HhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9888875 4666679999999999999999999999999999999999999998888876654
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.42 E-value=2.2e-06 Score=72.56 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=87.2
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
..+++.|..+-..|+.++|+..|.+|++.-.. .+....++..+|.++..+|++++|+..+++++.-.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS-------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45788899999999999999999999985110 34557799999999999999999999999999998
Q ss_pred CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 357 PN---NVKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 357 p~---~~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
|+ +..+...++.++..+|++++|+..+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 888888899999999999999999887774
No 156
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.41 E-value=2.7e-06 Score=86.21 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=66.5
Q ss_pred cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHH---HHHHHHHHHHccCHHHH
Q psy6102 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA---LLNMAAVQLKFKAYKRA 345 (426)
Q Consensus 269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~---~~nlA~~~~~lg~~~~A 345 (426)
.......+..+.++|..|++.|+|++|+..|++||++ +|.+..+ |+|+|.||..+|++++|
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----------------~Pd~aeA~~A~yNLAcaya~LGr~dEA 131 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL----------------NPNPDEAQAAYYNKACCHAYREEGKKA 131 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 3455668999999999999999999999999999999 8998855 99999999999999999
Q ss_pred HHHHHHHHHhC
Q psy6102 346 INLCDDILLME 356 (426)
Q Consensus 346 i~~~~~AL~ld 356 (426)
++++.+||++.
T Consensus 132 la~LrrALels 142 (453)
T PLN03098 132 ADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHhc
Confidence 99999999984
No 157
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.41 E-value=3.2e-06 Score=86.76 Aligned_cols=129 Identities=10% Similarity=-0.017 Sum_probs=107.6
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHH--HHHHHHHHHHccCHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA--LLNMAAVQLKFKAYKRAINLCDD 351 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~--~~nlA~~~~~lg~~~~Ai~~~~~ 351 (426)
+....+...+..+...|++++|+..+.++++. .|++... ..-+....+..++...+++.+++
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~----------------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK----------------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----------------CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 35677888999999999999999999999998 6666542 13333444556889999999999
Q ss_pred HHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102 352 ILLMEPNNV--KALFRRGRAQVSMNNFEQGLQDYE--QALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 352 AL~ldp~~~--kal~~lg~a~~~lg~~~~Al~~l~--kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k 420 (426)
+++.+|+++ ..+..+|.+++.+|++++|.++|+ ++++.+|++.... .++.++..+++.+++. ..|++
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~-~~~~~ 395 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAA-AMRQD 395 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHH-HHHHH
Confidence 999999999 889999999999999999999999 6888999887755 9999999999988774 35554
No 158
>KOG1156|consensus
Probab=98.41 E-value=1.6e-06 Score=89.99 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=108.9
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
..++..+...|..++|...+...++.|.- .|...+.+...|..+..+|+-++|...+..++..|
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK----------------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh----------------CCccchhHHhccchhhcccchHHHHHHHHHHhccC
Confidence 45667777888899999999988888886 78889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
+...-.|..+|.++....+|++|+++|+.|+.++|+|.+++.-+..+..++++++-.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999999999999999998887643
No 159
>KOG1310|consensus
Probab=98.38 E-value=1.5e-06 Score=88.29 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=103.8
Q ss_pred chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc---cCHHHHH
Q psy6102 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---KAYKRAI 346 (426)
Q Consensus 270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l---g~~~~Ai 346 (426)
.+....++.++..|+..|-...+..||..|.+++.. -|....+|.|+|.++++. ++--.|+
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----------------~~~~~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----------------VPDAIYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----------------ccchhHHHHhHHHHHHhhhccccHHHHH
Confidence 455567888999999999999999999999999999 899999999999999986 5778899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102 347 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400 (426)
Q Consensus 347 ~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l 400 (426)
.+|..||.++|...+|||+++.++..++++.+|+++...+....|.+.......
T Consensus 432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v 485 (758)
T KOG1310|consen 432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFV 485 (758)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhh
Confidence 999999999999999999999999999999999999998888888776554443
No 160
>KOG1840|consensus
Probab=98.34 E-value=1.6e-05 Score=82.81 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=114.8
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
+.+..+.+.+..+..++++++|+.+|++++++..... .+.++.-+..+.++|.+|+.+|+|.+|.+.+++||
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~--------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP--------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4677789999999999999999999999999864222 12245678899999999999999999999999999
Q ss_pred HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 354 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-------LPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 354 ~ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l-------~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
.+. +.....+.++|..+..++++.+|...|..++.+ .|+-.....+|+.++..+++++.+..
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 774 344778999999999999999999999999886 34556789999999999999998874
No 161
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.34 E-value=6.5e-06 Score=82.08 Aligned_cols=144 Identities=11% Similarity=-0.021 Sum_probs=116.2
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc----------------c-hh----hhhhhcCcchHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS----------------Q-SK----TQQKHFRSYYTAALLNMAA 334 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~----------------~-~~----~~~~~~~p~~~~~~~nlA~ 334 (426)
.+.....+..++..|++++|+..+.++++..|..... . .. .......|....++..+|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 3445667888999999999999999999865432211 0 01 1122356777788889999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHhhH
Q psy6102 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ----ILKEIAFVRKQMRHH 410 (426)
Q Consensus 335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~----a~~~l~~i~~~l~~~ 410 (426)
++..+|++++|+..++++++++|++..++..+|.++...|++++|+..+++++...|.+.. .+..++.++...|+.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999999885432 455789999999999
Q ss_pred HHHHHHHHHh
Q psy6102 411 LNLEKMTYAR 420 (426)
Q Consensus 411 ~~a~k~~~~k 420 (426)
+++.+ .|.+
T Consensus 203 ~~A~~-~~~~ 211 (355)
T cd05804 203 EAALA-IYDT 211 (355)
T ss_pred HHHHH-HHHH
Confidence 98876 4444
No 162
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=1.2e-05 Score=77.53 Aligned_cols=164 Identities=11% Similarity=0.178 Sum_probs=132.2
Q ss_pred ccceechhhcccc-HHHHHhhchhhCCcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy6102 239 KNGIFGCVRQGFG-VAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317 (426)
Q Consensus 239 ~~~vFG~VieGld-vl~~I~~l~~~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~ 317 (426)
.+...|.+.+... +-++|.--..--.+|.-. ..+...++.++|..|...|-++.|...|...++.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT--~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de------------ 136 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT--FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE------------ 136 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc------------
Confidence 6677888776553 333443322222333322 2346778999999999999999999999988875
Q ss_pred hhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392 (426)
Q Consensus 318 ~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~-----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~ 392 (426)
...-..++..+..+|....+|++||+...+..++.+.. +..|..+|+.+....+.+.|+..+.+|++-+|+
T Consensus 137 ----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 137 ----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred ----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 45556789999999999999999999999999999876 456778899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 393 DQQILKEIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 393 n~~a~~~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
+..+-..++.+....|+++.+.+ .|++.
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~-~~e~v 240 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVE-ALERV 240 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHH-HHHHH
Confidence 99999999999999999998876 44444
No 163
>KOG3060|consensus
Probab=98.32 E-value=2.9e-05 Score=72.76 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=79.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDD 351 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~ 351 (426)
..++|.+++..|+..++|++|+-+|.+.+-+ +|.++.+...+|.+++-+| ++.-|.++|.+
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~----------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLI----------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6789999999999999999999999999998 9999999999999999876 67789999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy6102 352 ILLMEPNNVKALFRRGRAQVSMNNFEQG 379 (426)
Q Consensus 352 AL~ldp~~~kal~~lg~a~~~lg~~~~A 379 (426)
+|+++|.+..++|.+-.|-..+-....+
T Consensus 217 alkl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 217 ALKLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred HHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999998876665444443
No 164
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.31 E-value=6.4e-06 Score=82.12 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=89.5
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
.+...|..+...|++++|+..+.+++++ .|.+..++..+|.++...|++++|+..+++++.+.|
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALEL----------------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 4456788999999999999999999999 999999999999999999999999999999999987
Q ss_pred CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102 358 NNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392 (426)
Q Consensus 358 ~~~----kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~ 392 (426)
..+ ..|+.+|.++..+|++++|+..|++++...|.
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 443 35678999999999999999999999887774
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.29 E-value=1.1e-05 Score=77.69 Aligned_cols=97 Identities=9% Similarity=0.125 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHH
Q psy6102 325 YTAALLNMAAVQ-LKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQIL 397 (426)
Q Consensus 325 ~~~~~~nlA~~~-~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~ 397 (426)
....++..|..+ ++.|+|++|+..|+..++..|++ +.++|.+|.+|+.+|++++|+..|++++...|++ +.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456778888876 56799999999999999999988 6899999999999999999999999999998885 6788
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 398 KEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 398 ~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
..++.++..+++..++.+ .|+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~-~~~~vi 244 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKA-VYQQVI 244 (263)
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 888999988888777754 454443
No 166
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.28 E-value=2.7e-05 Score=79.58 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=95.0
Q ss_pred hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHH-HHHHHHccCHHHHHHHHH
Q psy6102 272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM-AAVQLKFKAYKRAINLCD 350 (426)
Q Consensus 272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nl-A~~~~~lg~~~~Ai~~~~ 350 (426)
..+.+......|...+..|+|++|.+...++-+. ...+.+++.+ |.+..++|+++.|..++.
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~ 142 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH-----------------AEQPVVNYLLAAEAAQQRGDEARANQHLE 142 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------------ccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3346677788888888889999888666655443 2224444444 445588888888888888
Q ss_pred HHHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 351 DILLMEPNNVKA-LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 351 ~AL~ldp~~~ka-l~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
++.+.+|++..+ ....+..+...|++++|++.++++++.+|+++.+...+..++...++.+++.
T Consensus 143 ~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 143 RAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 888888887543 3455888888888888888888888888888888888888888888777665
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.25 E-value=1.5e-05 Score=70.43 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=93.3
Q ss_pred hhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102 316 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 316 ~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~ 395 (426)
.+...+.+......+..|.-++..|++++|...+.-...+||.+++.|+.+|.|+..+++|++|+..|-.|..++++|+.
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 34445577888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q psy6102 396 ILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 396 a~~~l~~i~~~l~~~~~a~k 415 (426)
.....+.|+..+++...|..
T Consensus 107 p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred ccchHHHHHHHhCCHHHHHH
Confidence 99999999999999988876
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=2.1e-05 Score=79.74 Aligned_cols=109 Identities=19% Similarity=0.174 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR 368 (426)
Q Consensus 289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~ 368 (426)
.++|+.|+..+++..+. +|. +...+|.+++.+++..+|++.++++|+.+|.++..+...+.
T Consensus 182 t~~~~~ai~lle~L~~~----------------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRER----------------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred cccHHHHHHHHHHHHhc----------------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45688888888887665 554 55668999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 369 AQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 369 a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
.+...++++.|+...++|..+.|++...|..|..++..+++++.|--.
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999998643
No 169
>KOG1174|consensus
Probab=98.21 E-value=2.1e-05 Score=78.16 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=114.1
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch-----------hhh-------hhhcCcchHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-----------KTQ-------QKHFRSYYTAALLNMAAVQ 336 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~-----------~~~-------~~~~~p~~~~~~~nlA~~~ 336 (426)
....+-..|..+|..|++.+|+..|+++..+.++.-.+.+ .+. ..........-|+--+...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 5667788999999999999999999999887544433322 000 0011112233344455666
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
+..++++.|+.+..++|+++|.+..+|...|.++..+++.++|+-.|+.|..+.|..-.....|-.++...++.+++.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999998886
No 170
>KOG0543|consensus
Probab=98.21 E-value=7.3e-06 Score=81.45 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=90.0
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...+.+++..+.+.++|.+|+...+++|.+ +|.++.+++.+|.+++.+++|+.|+.++++|+++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLEL----------------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----------------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCC
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQG-LQDYEQALDLLP 391 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~A-l~~l~kAl~l~P 391 (426)
+|+|-.+...+..|-....++.+. .+.|.+.+..-+
T Consensus 321 ~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 321 EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999998888777666554 778888887654
No 171
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.20 E-value=8.1e-05 Score=68.92 Aligned_cols=128 Identities=12% Similarity=0.162 Sum_probs=101.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-----------HH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-----------YK 343 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~-----------~~ 343 (426)
...+.+.+|..+|+.++|.+|+..|++.++..|. .|....+++.+|.+++.+.. ..
T Consensus 41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~ 107 (203)
T PF13525_consen 41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-------------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTR 107 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------CcchhhHHHHHHHHHHHhCccchhcccChHHHH
Confidence 5567889999999999999999999999998554 56677899999999877643 45
Q ss_pred HHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHH
Q psy6102 344 RAINLCDDILLMEPNN-----------------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFV 403 (426)
Q Consensus 344 ~Ai~~~~~AL~ldp~~-----------------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~---~a~~~l~~i 403 (426)
+|+..++..+..-|++ .+--+..|.-|+..|.|..|+.-++.+++-.|+.+ +++..+...
T Consensus 108 ~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 108 KAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 8999999999999987 22356788999999999999999999999999885 567777777
Q ss_pred HHHHhhHHHHHH
Q psy6102 404 RKQMRHHLNLEK 415 (426)
Q Consensus 404 ~~~l~~~~~a~k 415 (426)
+..++....++.
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 778887775543
No 172
>KOG2003|consensus
Probab=98.19 E-value=3.7e-05 Score=77.06 Aligned_cols=148 Identities=14% Similarity=0.050 Sum_probs=87.1
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------ch-------hhhhhhcCcchHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAV 335 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~-------~~~~~~~~p~~~~~~~nlA~~ 335 (426)
.+.+++++.|..+-.+|+.++|+++|-+.-.++....+. ++ ......+-|.++.++..+|..
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 478899999999999999999999998877663211100 00 011112234444444444444
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH-
Q psy6102 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE- 414 (426)
Q Consensus 336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~- 414 (426)
|-+-|+-.+|.+++-...+.-|+|.+..-.+|.-|....-.++|+.+|++|--+.|.-..-+..++.|.++.+.++++-
T Consensus 602 ydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 4444444444444444444445555555555555555555566677777776667766666666777777777777664
Q ss_pred --HHHHHhh
Q psy6102 415 --KMTYARM 421 (426)
Q Consensus 415 --k~~~~k~ 421 (426)
+..++|+
T Consensus 682 ~yk~~hrkf 690 (840)
T KOG2003|consen 682 LYKDIHRKF 690 (840)
T ss_pred HHHHHHHhC
Confidence 4444444
No 173
>KOG1129|consensus
Probab=98.18 E-value=5e-06 Score=80.26 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=84.8
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
+.+.-++.+|.+..+...|+..|.+.++. -|.++..++.+|.++..|+++++|++.|+.+++++
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~----------------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDS----------------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhc----------------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 34444455555555555555555555554 79999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~ 410 (426)
|.|.+++--+|.-|+.-++.+-|+.+|++.|++--.+++...+++.|-...++.
T Consensus 321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 998777666666666666666666666666666666666666666665544443
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=9.7e-06 Score=82.20 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=86.2
Q ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
.-++..+...++-.+|+....++|.. .|.+..++...|..+++.++++.|++.+++|..+.|++
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~----------------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKE----------------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34566666777889999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
.+.|+.++.+|..+|+++.|+..++.+--+-+.+
T Consensus 268 f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 268 FETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 9999999999999999999998887554433333
No 175
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.16 E-value=2.9e-05 Score=79.39 Aligned_cols=126 Identities=7% Similarity=0.035 Sum_probs=104.4
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
+.+......+..+...|+.++|.....++++. .+ +..+..-.+.+ ..++++++++.++..+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----------------~~-~~~l~~l~~~l--~~~~~~~al~~~e~~l 321 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR----------------QY-DERLVLLIPRL--KTNNPEQLEKVLRQQI 321 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------------CC-CHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence 35667778899999999999999999999885 33 34444333333 4599999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k 420 (426)
+..|+++..++.+|.++...+++++|.+.|++++++.|++.. ...+..++..+++.+++.. .|++
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~-~~~~ 386 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAA-MRRD 386 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999766 4478999999999888843 4443
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=98.12 E-value=4.2e-05 Score=77.75 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=86.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg 367 (426)
...+-.+|+++-.+|+++ +|.++.++..+|.++...++++.|+..+++|+.++|+.+.+|+..|
T Consensus 316 ~~~~~~~a~~~A~rAvel----------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~ 379 (458)
T PRK11906 316 LELAAQKALELLDYVSDI----------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRA 379 (458)
T ss_pred chHHHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHH
Confidence 456677888888888888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102 368 RAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397 (426)
Q Consensus 368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~ 397 (426)
.++...|+.++|++.+++|++++|.-..+-
T Consensus 380 ~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 380 LVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 999999999999999999999999765443
No 177
>KOG1127|consensus
Probab=98.11 E-value=9.3e-06 Score=87.80 Aligned_cols=140 Identities=12% Similarity=0.058 Sum_probs=115.2
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------chhhhhh-------h--cCcchHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQK-------H--FRSYYTAALLNMAA 334 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~~~~~~-------~--~~p~~~~~~~nlA~ 334 (426)
.+..+..+|..|...-+...|-.+|.+|.++-+..... ...+.+. + ........|..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 56778889999988889999999999999864322221 1111111 1 11223346777999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
.|++-++...|+.+++.||+.+|.+..+|..+|.+|..-|+|..|++.|.+|..++|.+.-+....+-++..+++++++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998774
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=1.8e-05 Score=77.04 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=95.5
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
...+..+...|+.|-..++|++|..+|.+|.++...... ...-...|.+.+.++.+. ++++|+.++++|
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A 100 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD----------KFEAAKAYEEAANCYKKG-DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 346777888888888888999999999999887543221 223355677777776555 899999999998
Q ss_pred HHhCC--C----CHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102 353 LLMEP--N----NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPN--D----QQILKEIAFVRKQMRHHLNLEKMTYA 419 (426)
Q Consensus 353 L~ldp--~----~~kal~~lg~a~~~l-g~~~~Al~~l~kAl~l~P~--n----~~a~~~l~~i~~~l~~~~~a~k~~~~ 419 (426)
+.+-- . -.+++..+|.+|... +++++|++.|++|+++... . ..+...++.+...++++.++.. .|.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~-~~e 179 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE-IYE 179 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH-HHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH-HHH
Confidence 87631 1 266888889988888 8999999999999887321 1 3466677788888888887754 444
Q ss_pred hh
Q psy6102 420 RM 421 (426)
Q Consensus 420 k~ 421 (426)
+.
T Consensus 180 ~~ 181 (282)
T PF14938_consen 180 EV 181 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.11 E-value=2.7e-05 Score=82.06 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102 291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 362 (426)
Q Consensus 291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka 362 (426)
++++|...|++|+++ +| +..+|..+|.++...|++++|++.|.+|+.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L----------------~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDL----------------EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHc----------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 455555555555555 88 57899999999999999999999999999999998863
No 180
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.08 E-value=6.9e-06 Score=53.02 Aligned_cols=33 Identities=30% Similarity=0.667 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
++|+++|.++..+|++++|+.+|++|++++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 566666666666666666666666666666653
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.07 E-value=0.00014 Score=69.40 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=106.0
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-------------
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA------------- 341 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~------------- 341 (426)
.....+.+|..+++.++|.+|+..|++.++..|. +|....+++.+|.++..++.
T Consensus 68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~ 134 (243)
T PRK10866 68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSD 134 (243)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccc
Confidence 4456789999999999999999999999999554 56778899999999866641
Q ss_pred -----HHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHH
Q psy6102 342 -----YKRAINLCDDILLMEPNNV-----------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQI 396 (426)
Q Consensus 342 -----~~~Ai~~~~~AL~ldp~~~-----------------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a 396 (426)
..+|+..+++.++.-|+.. +--+..|.-|...|.|..|+.-++.+++-.|+. +++
T Consensus 135 rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea 214 (243)
T PRK10866 135 RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA 214 (243)
T ss_pred cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence 3578899999999999872 224567788999999999999999999999876 567
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q psy6102 397 LKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 397 ~~~l~~i~~~l~~~~~a~k 415 (426)
+..+...+..++..+++..
T Consensus 215 l~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 215 LPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHHHcCChHHHHH
Confidence 7788888888888877754
No 182
>KOG1156|consensus
Probab=98.06 E-value=4.3e-05 Score=79.64 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=75.8
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
.+-..|..+...|+-++|..+-..+++. ++....+|.-+|.++..-++|++||.+|..||.++|
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~----------------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRN----------------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK 106 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhcc----------------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 3445566666666666666666666665 566666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
+|...|+-++.....+++++.....-.+.+++.|.....|...+...-.++.+..+
T Consensus 107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666555555555555444
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=4e-05 Score=74.63 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=87.2
Q ss_pred hHHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~-g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
..+..+..+|..|... +++++|+.+|++|+++...... ......++.+.|.++.++++|++|++.|+++
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS----------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4678899999999999 9999999999999998543321 2234668889999999999999999999999
Q ss_pred HHhCCC------CH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 353 LLMEPN------NV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 353 L~ldp~------~~-kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
....-+ ++ +.++..+.|++..||+..|...+++....+|.-
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 875321 13 356788889999999999999999999999854
No 184
>KOG4648|consensus
Probab=98.05 E-value=8.3e-06 Score=79.18 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
+-.+|..|++.|.|++||.+|.+++.++|.|+-.+.+||.+|+.+.+|..|..+++.|+.|+-....++...+.+...++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred hHHHHHH
Q psy6102 409 HHLNLEK 415 (426)
Q Consensus 409 ~~~~a~k 415 (426)
+..++-+
T Consensus 180 ~~~EAKk 186 (536)
T KOG4648|consen 180 NNMEAKK 186 (536)
T ss_pred hHHHHHH
Confidence 8777654
No 185
>KOG0495|consensus
Probab=98.04 E-value=6.6e-05 Score=78.32 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=99.6
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~ 358 (426)
|+..++...-+++.++|++++.+||+. -|....+|..+|.++.++++.+.|.+.|...++..|.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~----------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS----------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh----------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 444444444455555555555555555 7888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT 417 (426)
Q Consensus 359 ~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~ 417 (426)
.+-.|..++.+-...|....|...++++.--+|+|...+...-++..+.|..+++...+
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999888888888888887776433
No 186
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.99 E-value=0.00014 Score=76.56 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
..+++.+|..|..+|++++|+++.++||...|..++.|+.+|.+|.+.|++.+|.+.++.|..+|+.|.-+......-..
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHhhHHHHHH
Q psy6102 406 QMRHHLNLEK 415 (426)
Q Consensus 406 ~l~~~~~a~k 415 (426)
+.++.++|.+
T Consensus 274 Ra~~~e~A~~ 283 (517)
T PF12569_consen 274 RAGRIEEAEK 283 (517)
T ss_pred HCCCHHHHHH
Confidence 9888888865
No 187
>KOG4555|consensus
Probab=97.99 E-value=0.00018 Score=61.03 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=72.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Q psy6102 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ----QILKEIAFVRK 405 (426)
Q Consensus 330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~----~a~~~l~~i~~ 405 (426)
-..|.++..-|+.+.|++-+.++|.+-|..+.+|.++++++..+|+.++|++++++|+++...-. ++....+.+++
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999965432 45566677777
Q ss_pred HHhhHHHHHH
Q psy6102 406 QMRHHLNLEK 415 (426)
Q Consensus 406 ~l~~~~~a~k 415 (426)
.+++-+.+.+
T Consensus 127 l~g~dd~AR~ 136 (175)
T KOG4555|consen 127 LLGNDDAARA 136 (175)
T ss_pred HhCchHHHHH
Confidence 7776665543
No 188
>KOG1174|consensus
Probab=97.98 E-value=5.3e-05 Score=75.32 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=88.6
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH----
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD---- 350 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~---- 350 (426)
....+...|+.+.+.++.++|+-.|..|+.+ .|...++|..+-.||+..+.+.+|....+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQML----------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhc----------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 4566777788888888888888888888877 78888888888888888887777765444
Q ss_pred --------------------------------HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 351 --------------------------------DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 351 --------------------------------~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
++|+++|.+..|...+|..+...|+++.++..++++|...|++. ...
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~ 475 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHN 475 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHH
Confidence 44444555666666666666666666666666666666555433 344
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102 399 EIAFVRKQMRHHLNLEKMTYARMFQN 424 (426)
Q Consensus 399 ~l~~i~~~l~~~~~a~k~~~~k~f~~ 424 (426)
.|+.+.......+++.-+-+..+.-|
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 55556666666666555544444433
No 189
>KOG4234|consensus
Probab=97.97 E-value=6.4e-05 Score=68.23 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=79.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 404 (426)
Q Consensus 330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~-----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~ 404 (426)
-.-|.-+++.|+|.+|..-|..||.+.|.. .-.|.++|.|++.++.++.|+.++.+|++|+|.+..++...+.++
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 345778889999999999999999999976 347889999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHhh
Q psy6102 405 KQMRHHLNLEKMTYARM 421 (426)
Q Consensus 405 ~~l~~~~~a~k~~~~k~ 421 (426)
..+.+++++.. .|+++
T Consensus 179 ek~ek~eeale-DyKki 194 (271)
T KOG4234|consen 179 EKMEKYEEALE-DYKKI 194 (271)
T ss_pred HhhhhHHHHHH-HHHHH
Confidence 99988877653 44444
No 190
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.97 E-value=0.00037 Score=65.80 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=101.0
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..|++.|....+.|+|.+|+..|.......+. .|....+...++.++++.++|++|+...++-+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 36788999999999999999999999988876433 56667899999999999999999999999999
Q ss_pred HhCCCCH---HHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhHH
Q psy6102 354 LMEPNNV---KALFRRGRAQVSMNN--------FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL 411 (426)
Q Consensus 354 ~ldp~~~---kal~~lg~a~~~lg~--------~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~~ 411 (426)
.+.|.++ -++|.+|.+++..=+ ..+|+..|+..+.-.|+.+ .+...+..+...+..++
T Consensus 99 ~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 99 RLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 9999774 478889999766522 3568889999999999985 45555555555554444
No 191
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.97 E-value=0.00021 Score=75.07 Aligned_cols=124 Identities=12% Similarity=0.165 Sum_probs=96.7
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-----CHHHHHHHHHH
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----AYKRAINLCDD 351 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-----~~~~Ai~~~~~ 351 (426)
..+-.+|..+.+.|++++|...|...|+. +|.+...|..+..|..-.. +.+...+.|++
T Consensus 39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----------------NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~ 102 (517)
T PF12569_consen 39 AVLEKRAELLLKLGRKEEAEKIYRELIDR----------------NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDE 102 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHH
Confidence 44667899999999999999999999999 9999999999988872211 22222222222
Q ss_pred HHHhCC--------------------------------------------------------------------------
Q psy6102 352 ILLMEP-------------------------------------------------------------------------- 357 (426)
Q Consensus 352 AL~ldp-------------------------------------------------------------------------- 357 (426)
.-...|
T Consensus 103 l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~ 182 (517)
T PF12569_consen 103 LAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNG 182 (517)
T ss_pred HHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCc
Confidence 211111
Q ss_pred -------CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 358 -------NN--VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 358 -------~~--~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
.. ..++|.+|+.|-.+|++++|+++.++||+..|...+.....+++++..|+..+|...
T Consensus 183 ~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 183 DDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred cccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 01 246799999999999999999999999999999999999999999999999988653
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.7e-05 Score=54.59 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR 368 (426)
Q Consensus 328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~ 368 (426)
++..+|.+|.++|++++|++.|+++++++|+++.+|+.+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 34455555555555555555555555555555555555443
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.7e-05 Score=54.62 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 402 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~ 402 (426)
+.+++.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3689999999999999999999999999999999999998875
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.96 E-value=7.6e-06 Score=53.20 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy6102 348 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381 (426)
Q Consensus 348 ~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~ 381 (426)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.96 E-value=0.00019 Score=64.50 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=103.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.....+.+|+.+...|+|.+|..+|++++.=+ -..+..++..+|.+.+..+++..|...+++..+
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~---------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI---------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 45667889999999999999999999999742 567788999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHH
Q psy6102 355 MEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 412 (426)
Q Consensus 355 ldp~--~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~ 412 (426)
.+|. .++...-+|.+|..+|++..|...|+.++...|+- ++.......+..+++..+
T Consensus 153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLRE 211 (251)
T ss_pred cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhH
Confidence 9984 58888899999999999999999999999999864 455555666666664443
No 196
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.95 E-value=2e-05 Score=50.59 Aligned_cols=34 Identities=32% Similarity=0.633 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
+++|+.+|.+++.+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 197
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.94 E-value=5.2e-05 Score=74.16 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=67.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHH
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK--AYKRAINLCDDILLMEPNNVKA 362 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg--~~~~Ai~~~~~AL~ldp~~~ka 362 (426)
.+.+.++++.|.+.++..-+. +++..-.....|++.+..| .+.+|...|++.....+.++..
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~----------------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ 203 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQI----------------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL 203 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCC----------------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc----------------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH
Confidence 444555556655555444332 4444444444444555555 4777777777766666677777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102 363 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 411 (426)
Q Consensus 363 l~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~ 411 (426)
+..+|.|++.+|+|++|.+.+++|+..+|.++.++.++.-+...+++..
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 7777777777777777777777777777777777777777766666663
No 198
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.92 E-value=1.8e-05 Score=51.01 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
+.+|+++|.+++.++++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00015 Score=69.01 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=82.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAF 402 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~l~~ 402 (426)
.++.|.-+++.|+|..|...+..-++.-|+. +.|+|++|.+++.+|+|++|...|..+++-.|++ ++++..++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7788888899999999999999999999876 7899999999999999999999999999988876 588999999
Q ss_pred HHHHHhhHHHHHHHHHHhhh
Q psy6102 403 VRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 403 i~~~l~~~~~a~k~~~~k~f 422 (426)
+...+++.++|-+ +|+.+.
T Consensus 224 ~~~~l~~~d~A~a-tl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACA-TLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHH-HHHHHH
Confidence 9999999887754 555543
No 200
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.89 E-value=4.5e-05 Score=84.02 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=86.3
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc---chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS---QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 351 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~---~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~ 351 (426)
....++.+|..+++.+++..|... .++...+....- +..-......+.+..+++.+|.||-++|++++|...|++
T Consensus 64 ~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 64 SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 445677777788888887777766 555553221100 001111112466667999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
+|+++|+|+.++.++|..|... ++++|++.+.+|+..
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999875
No 201
>KOG1130|consensus
Probab=97.88 E-value=5.2e-05 Score=75.33 Aligned_cols=133 Identities=13% Similarity=0.158 Sum_probs=107.2
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
....+-++||.||-.|+|+.||..-+.-|++...+.. ....-.++.|+|.|+.-+|+++.|++.|+.++.
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh----------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 5567889999999999999999999999988665542 223356899999999999999999999998765
Q ss_pred h----CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102 355 M----EPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNLEKMT 417 (426)
Q Consensus 355 l----dp~--~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~------n~~a~~~l~~i~~~l~~~~~a~k~~ 417 (426)
+ -.. .+...|.+|.+|..+.++..|+.++++-|.+..+ ...+.+.|+.....++..+++..-+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4 333 3566899999999999999999999988776432 3456777888888888888876533
No 202
>KOG0495|consensus
Probab=97.85 E-value=0.00019 Score=75.01 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=117.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch-----------h-------hhhhhcCcchHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-----------K-------TQQKHFRSYYTAALLNMAAVQ 336 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~-----------~-------~~~~~~~p~~~~~~~nlA~~~ 336 (426)
....|...+..++..|+...|.....+|++..+.....+. . ..+- ...-...+|+.-+...
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar-~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR-SISGTERVWMKSANLE 661 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh-ccCCcchhhHHHhHHH
Confidence 4567888889999999999999999999987543222111 0 1111 1233345777777778
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
..++..++|+..|+++|+.-|+..+.|..+|+++..+++.+.|.+.|...++..|...-.|..+..+....+..-++.--
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999888766555433
Q ss_pred HHHhhhcCC
Q psy6102 417 TYARMFQNG 425 (426)
Q Consensus 417 ~~~k~f~~~ 425 (426)
+=+....|+
T Consensus 742 ldrarlkNP 750 (913)
T KOG0495|consen 742 LDRARLKNP 750 (913)
T ss_pred HHHHHhcCC
Confidence 333344444
No 203
>KOG1127|consensus
Probab=97.81 E-value=9.2e-05 Score=80.35 Aligned_cols=116 Identities=12% Similarity=0.167 Sum_probs=104.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
+...|..+|-.|.+.+++..|+..|+.|++. +|.+..+|..+|.+|.+.|+|..|++.+++|..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 4566888999999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
++|.+.-+-|-.+.....+|.|.+|+..++..+.-...-..++..++.++.+
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999988765555566666655554
No 204
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.80 E-value=0.00033 Score=58.32 Aligned_cols=108 Identities=12% Similarity=0.202 Sum_probs=82.2
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH---
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL--- 354 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~--- 354 (426)
.....|....+.+-|++|...|.+|++.....+ .++.-..+..+.-++..++.++..+|+|++++....++|.
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP----~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIP----AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC----hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 334566677788899999999999999854443 3333344556777899999999999999999999999985
Q ss_pred ----hCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 355 ----MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 355 ----ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
|+.+. ..+.|++|.++..+|+.++|+..|+++-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45554 556789999999999999999999999764
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.76 E-value=0.00036 Score=60.66 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=84.6
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 351 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~ 351 (426)
.+...|......++...++..+.+++.+....... +-...-..+......++..++..+...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34455666667788899999999999875321111 112233344566778889999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
++.++|.+-.+|..+-.+|..+|++.+|++.|+++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988553
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.75 E-value=0.00013 Score=71.32 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102 290 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 369 (426)
Q Consensus 290 g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a 369 (426)
..+.+|...|++..+. .+..+.++..+|.|++.+|+|++|.+.+.+|+..+|.+++++.++..+
T Consensus 181 e~~~~A~y~f~El~~~----------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK----------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp TCCCHHHHHHHHHHCC----------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4688899999885543 466788999999999999999999999999999999999999999999
Q ss_pred HHHcCCh-HHHHHHHHHHHHhCCCcHHHHHH
Q psy6102 370 QVSMNNF-EQGLQDYEQALDLLPNDQQILKE 399 (426)
Q Consensus 370 ~~~lg~~-~~Al~~l~kAl~l~P~n~~a~~~ 399 (426)
...+|+. +.+.+++.+....+|+++-+...
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999 66777899988899998865543
No 207
>KOG3785|consensus
Probab=97.73 E-value=0.00027 Score=69.19 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
..+|.+++..-.|.+||+.|+++|.-+|.....-.++|.||+.+.-|+-+.+.+...|+..|+..-+...+.-..-++
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 344555555667888888888888888888888888888888888888888888888888888877766665554443
No 208
>KOG4642|consensus
Probab=97.73 E-value=6.8e-05 Score=69.72 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=82.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 409 (426)
Q Consensus 330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~ 409 (426)
-.-|.+++.-+.|..|+.+|.+||.++|..+..|-+++.|++.+.+++.+.++..+|++++|+..-+...++.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34466777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy6102 410 HLNLEKMTYAR 420 (426)
Q Consensus 410 ~~~a~k~~~~k 420 (426)
+.++.+.+-+.
T Consensus 94 ~~eaI~~Lqra 104 (284)
T KOG4642|consen 94 YDEAIKVLQRA 104 (284)
T ss_pred ccHHHHHHHHH
Confidence 98887654443
No 209
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.71 E-value=8.6e-05 Score=47.55 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
+.+|+.+|.+++++|++++|+++++++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3689999999999999999999999999999986
No 210
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.71 E-value=0.00021 Score=51.32 Aligned_cols=49 Identities=10% Similarity=0.306 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 409 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~ 409 (426)
+.+|.+|.+++.+|+|++|+.+.+.+|+++|+|.++......+...+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999988888776543
No 211
>KOG1130|consensus
Probab=97.62 E-value=0.00048 Score=68.64 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=98.9
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
.++.++||.+.-.|+++.|+++|++++.+.-.... ....+..++.+|.+|.-++++.+||.+..+-|++-
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~----------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN----------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc----------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999987433322 34456688999999999999999999999877664
Q ss_pred C------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCC-cHHHHHHHHHHHHHHhhH
Q psy6102 357 P------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPN-DQQILKEIAFVRKQMRHH 410 (426)
Q Consensus 357 p------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l-----~P~-n~~a~~~l~~i~~~l~~~ 410 (426)
. ....+++.+|.++..+|..++|+.+.++.+++ +|. -..+..++..+...++..
T Consensus 306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 2 45789999999999999999999999888875 233 234566666666665543
No 212
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.59 E-value=0.0029 Score=55.60 Aligned_cols=68 Identities=29% Similarity=0.552 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~-~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~ 392 (426)
....+..++..+...+++..|+..+.+++...+. ...++..++.++...+++..|+..+.+++...|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 166 LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 3334444444444444555555555555544444 3444555555555555555555555555554444
No 213
>KOG3785|consensus
Probab=97.57 E-value=0.00038 Score=68.17 Aligned_cols=103 Identities=10% Similarity=0.112 Sum_probs=78.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF 364 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~ 364 (426)
.+..+.||..|+...+-.+..- +.....+-..+|.|++++|+|++|+..|+.+..-+..+.+.+.
T Consensus 31 dfls~rDytGAislLefk~~~~---------------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v 95 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD---------------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV 95 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc---------------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence 3455688999999888777551 1111345567899999999999999999999998888999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
++|.|++.+|.|.+|...-.+| |+++.....+-.+.-+
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHK 133 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHH
Confidence 9999999999999998776655 5555444444333333
No 214
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.53 E-value=0.00022 Score=65.60 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=84.8
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~ 401 (426)
+...+.+++.||..|-.+|-+.-|..++.++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHhhHHHHHHHH
Q psy6102 402 FVRKQMRHHLNLEKMT 417 (426)
Q Consensus 402 ~i~~~l~~~~~a~k~~ 417 (426)
...---+++.-++...
T Consensus 141 i~~YY~gR~~LAq~d~ 156 (297)
T COG4785 141 IALYYGGRYKLAQDDL 156 (297)
T ss_pred eeeeecCchHhhHHHH
Confidence 6666666666665543
No 215
>PRK10941 hypothetical protein; Provisional
Probab=97.52 E-value=0.0012 Score=63.84 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
.+.+.|+=.+|++.++++.|+.+.+..|.++|+++.-+.-+|.+|..+|.+..|+.+++..++..|+++.+.....++..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999987766665544
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.51 E-value=0.0043 Score=54.49 Aligned_cols=124 Identities=20% Similarity=0.270 Sum_probs=83.2
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHH-HHHHccCHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA-VQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~-~~~~lg~~~~Ai~~~~~AL 353 (426)
....+...|..+...+++..|+..+.+++.. .+.........+. ++...++++.|+..+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALAL----------------DPDPDLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC----------------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556667777777777777777777777765 3333333444444 6777777777777777777
Q ss_pred HhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHH
Q psy6102 354 LMEP---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 354 ~ldp---~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
.++| .....++.++..+...++++.|+..+.+++...|. ...+...+..++...+...++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence 7666 45666666666677777777777777777777777 5666666666666665444443
No 217
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.49 E-value=0.00011 Score=47.71 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH
Q psy6102 298 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN 347 (426)
Q Consensus 298 ~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~ 347 (426)
+|++||++ +|.++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~----------------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL----------------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH----------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37889998 99999999999999999999999973
No 218
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.46 E-value=0.0002 Score=45.87 Aligned_cols=32 Identities=28% Similarity=0.638 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~ 392 (426)
++|+.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777764
No 219
>KOG2376|consensus
Probab=97.43 E-value=0.0018 Score=67.24 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=69.3
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------chhhhhh---hcCc---chHHHHHHHHHHHHHc
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQK---HFRS---YYTAALLNMAAVQLKF 339 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~~~~~~---~~~p---~~~~~~~nlA~~~~~l 339 (426)
..++..-+.+-..++|++|+....+.+...+..... ...+++. +..+ .+....+..|.|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 445556666677778888877777777652111110 0011111 1111 1122225677777777
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397 (426)
Q Consensus 340 g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~ 397 (426)
+..++|+.+++ .+++...+.+.-+|++++.+++|++|+..|+..++-+-++.+..
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 77777777776 55666667777777777777777777777777766655554433
No 220
>KOG0551|consensus
Probab=97.41 E-value=0.0011 Score=64.42 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l 400 (426)
.+.-|-.-|.-|++-++|..|+..|.++|+....+ +-.|.+||.|.+.+|+|..|+.++.+|+.++|.+..+...-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 45566677889999999999999999999886543 66799999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHH
Q psy6102 401 AFVRKQMRHHLNL 413 (426)
Q Consensus 401 ~~i~~~l~~~~~a 413 (426)
+.|...+.+..++
T Consensus 160 Akc~~eLe~~~~a 172 (390)
T KOG0551|consen 160 AKCLLELERFAEA 172 (390)
T ss_pred hHHHHHHHHHHHH
Confidence 9998888884443
No 221
>KOG1941|consensus
Probab=97.41 E-value=0.0013 Score=64.63 Aligned_cols=127 Identities=15% Similarity=0.181 Sum_probs=96.5
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
.....+|+.+...+.++++++.|++|+.+...... ......++..++..+-+++++++|+-+..+|+++-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D----------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD----------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC----------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 55667999999999999999999999998544331 12345688999999999999999999999988875
Q ss_pred CCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCc----HHHHHHHHHHHHHHhhHHHH
Q psy6102 357 PNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PND----QQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 357 p~~----------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~--P~n----~~a~~~l~~i~~~l~~~~~a 413 (426)
.+. ..++|+++.++..+|+...|.++.+.|.++. -.| .....-++.+++..++.+.+
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 432 4578999999999999999999999987753 333 23444556666666555544
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0066 Score=58.52 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=96.9
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH------
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD------ 350 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~------ 350 (426)
+.-...+......+++.+|...+..++.. .|.+..+...+|.|++..|+.+.|...+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh----------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 44567788889999999999999999999 88889999999999999999977755333
Q ss_pred ----------------------------HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHHHH
Q psy6102 351 ----------------------------DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQILKEI 400 (426)
Q Consensus 351 ----------------------------~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P--~n~~a~~~l 400 (426)
+.+.-||++..+-+.+|..+...|++++|++.+-..++.+- .+..+++.+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 23334799999999999999999999999999888888754 456777877
Q ss_pred HHHHHHHhh
Q psy6102 401 AFVRKQMRH 409 (426)
Q Consensus 401 ~~i~~~l~~ 409 (426)
-.+...++.
T Consensus 279 le~f~~~g~ 287 (304)
T COG3118 279 LELFEAFGP 287 (304)
T ss_pred HHHHHhcCC
Confidence 777777773
No 223
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.39 E-value=0.0061 Score=60.68 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=112.2
Q ss_pred hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 350 (426)
Q Consensus 271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~ 350 (426)
.....+......|..-+..|+|.+|.+...++-+. .+.-...|..=|.+..++|+++.|-.++.
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~----------------~e~p~l~~l~aA~AA~qrgd~~~an~yL~ 142 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----------------GEQPVLAYLLAAEAAQQRGDEDRANRYLA 142 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----------------CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34456777888999999999999999999987776 66667788888889999999999999999
Q ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 351 DILLMEP-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 351 ~AL~ldp-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
++-++.+ +..-++..++..+...+++..|..-..++++..|.+++++....+++..++...+.-
T Consensus 143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence 9999944 567788999999999999999999999999999999999999999999998887654
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.37 E-value=0.0013 Score=57.07 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---HH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ---IL 397 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~---a~ 397 (426)
.....+++.|...++.|+|.+|++.++.+...-|-. ..+.+.+|.+|+..+++++|+..+++-++|+|.++. ++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 446688999999999999999999999999887744 789999999999999999999999999999999864 44
Q ss_pred HHHHHHHHHH
Q psy6102 398 KEIAFVRKQM 407 (426)
Q Consensus 398 ~~l~~i~~~l 407 (426)
...+.+.-..
T Consensus 88 Y~~gL~~~~~ 97 (142)
T PF13512_consen 88 YMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 225
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.35 E-value=0.00081 Score=67.17 Aligned_cols=121 Identities=10% Similarity=0.158 Sum_probs=94.9
Q ss_pred cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch--hhhhhhcCcchHHHHHHHHHHHHHccCHHHHH
Q psy6102 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI 346 (426)
Q Consensus 269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~--~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai 346 (426)
...+.+..+.....|..+|++++|..|+-.|..||+++.+-..... .....++.....-+...+..||+++++.+-|+
T Consensus 169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 3455567777788899999999999999999999998754322111 00111111223446778999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 347 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 347 ~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
....+.|-++|.+..-+++.|.|+..+.+|.+|...+-.|.-+
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887776543
No 226
>KOG2376|consensus
Probab=97.31 E-value=0.0029 Score=65.78 Aligned_cols=117 Identities=15% Similarity=0.268 Sum_probs=92.1
Q ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Q psy6102 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME--- 356 (426)
Q Consensus 280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld--- 356 (426)
++.+.++|+.+..++|+..++ -+ ++....++..+|.+++++++|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GL----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cc----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 577888888888888888887 22 56667788899999999999999999998875443
Q ss_pred ---------------------------C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCc-H------
Q psy6102 357 ---------------------------P-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-------PND-Q------ 394 (426)
Q Consensus 357 ---------------------------p-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-------P~n-~------ 394 (426)
| +..+.+|+.|.++...|+|.+|++.+++|+++. -.+ .
T Consensus 144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 2 246789999999999999999999999995431 112 2
Q ss_pred -HHHHHHHHHHHHHhhHHHHHH
Q psy6102 395 -QILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 395 -~a~~~l~~i~~~l~~~~~a~k 415 (426)
.+...+..++..+|+.+++..
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHH
Confidence 356677778888888887754
No 227
>KOG2796|consensus
Probab=97.28 E-value=0.006 Score=57.87 Aligned_cols=125 Identities=13% Similarity=0.178 Sum_probs=78.3
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH--
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL-- 353 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL-- 353 (426)
....+.+.+.+...+.|.-.+..|.+.++.. .|..+.+...++.+.++.|+.+.|..+++.+-
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445667778888889999999999888862 25555666666666666666666666666332
Q ss_pred --HhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 354 --LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 354 --~ldp--~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+++. .+..++.+.+.++...++|.+|...|.+++..||.++.+..+.+.|+.-+++..+|.|
T Consensus 242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence 2332 2333444555555555666666666666666666666666666666666666655554
No 228
>KOG4151|consensus
Probab=97.26 E-value=0.00068 Score=72.50 Aligned_cols=127 Identities=18% Similarity=0.264 Sum_probs=109.4
Q ss_pred ccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH--ccCHHHH
Q psy6102 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRA 345 (426)
Q Consensus 268 ~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~--lg~~~~A 345 (426)
.....+..+...+..||.+|++++|..|...|..++.+++.. +.....+..+++.|++. +++|..+
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~------------~~~~a~~~~~~~s~~m~~~l~~~~~~ 112 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD------------HHVVATLRSNQASCYMQLGLGEYPKA 112 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc------------chhhhhHHHHHHHHHhhcCccchhhh
Confidence 455566778899999999999999999999999999986522 46778889999999986 4699999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 346 i~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
+..|+-|+...|...++++.++.+|..+++++-|++++.-....+|.+..+.....+++..
T Consensus 113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997666644444443
No 229
>KOG2053|consensus
Probab=97.20 E-value=0.007 Score=65.64 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=96.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365 (426)
Q Consensus 286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~ 365 (426)
....+++.+|+....+.++. .|...-+..--|..+.++|++++|..+++..-.+-+++...+-.
T Consensus 19 ~ld~~qfkkal~~~~kllkk----------------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK----------------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 44567888999888888887 88888888899999999999999997666655666788888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 366 lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+-.||..++++++|..+|++++..+|+ .+....+=.++.+.+.+.+.++
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8877777778887777665554
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0067 Score=59.07 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=94.4
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILLME 356 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~-lg~~~~Ai~~~~~AL~ld 356 (426)
.|....+..-+.+..+.|...|.+|++. .+....+|...|.+-++ .++.+.|...|+.+++.-
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~----------------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD----------------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 4555666777777899999999999854 56678899999999777 577777999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhHH
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL 411 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~~ 411 (426)
|.+...|.....-+..+++.+.|...|++++..-|... .++...-..+...|+.+
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999988776 56666666666666444
No 231
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.16 E-value=0.00071 Score=43.28 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
.+|+.+|.++.++|++++|+++++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999964
No 232
>KOG2796|consensus
Probab=97.15 E-value=0.0067 Score=57.53 Aligned_cols=120 Identities=14% Similarity=0.238 Sum_probs=98.0
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
+.....+|....+.||-+.|..+|++.-+.....+. -.....+..|.+.+|+-.++|..|...+++.+..
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~----------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG----------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc----------cchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 445678899999999999999999876654322221 2455667888899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRK 405 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~l~~i~~ 405 (426)
||.++.+..+.|.|++.+|+...|++..+.++...|.. ..+..++..++.
T Consensus 282 D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 282 DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 344445554444
No 233
>KOG0376|consensus
Probab=97.14 E-value=0.00049 Score=69.92 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
.+-+-|.-.++-++|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|....+....+.....+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456777888999999999999999999999999999999999999999999999999999999988888777777777
Q ss_pred hhHHHHHH
Q psy6102 408 RHHLNLEK 415 (426)
Q Consensus 408 ~~~~~a~k 415 (426)
++..++-+
T Consensus 86 ~~~~~A~~ 93 (476)
T KOG0376|consen 86 GEFKKALL 93 (476)
T ss_pred HHHHHHHH
Confidence 77777654
No 234
>KOG4340|consensus
Probab=97.09 E-value=0.004 Score=59.96 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=102.6
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH---
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL--- 353 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL--- 353 (426)
-.+..+|..|+...+|..|..+|.+.-.+ .|......+..|..+++.+.+..|+.......
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql----------------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~ 108 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQL----------------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNP 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCH
Confidence 34677899999999999999999998888 67777777777788888888877776443322
Q ss_pred -------Hh--------------------CC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102 354 -------LM--------------------EP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 404 (426)
Q Consensus 354 -------~l--------------------dp--~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~ 404 (426)
++ -| +.+....+.|.+++..|+|++|++-|+.|++...-++....+++.++
T Consensus 109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH 188 (459)
T KOG4340|consen 109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH 188 (459)
T ss_pred HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence 11 13 45778999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHH
Q psy6102 405 KQMRHHLNLEKMT 417 (426)
Q Consensus 405 ~~l~~~~~a~k~~ 417 (426)
-..+++..+-+..
T Consensus 189 y~~~qyasALk~i 201 (459)
T KOG4340|consen 189 YSSRQYASALKHI 201 (459)
T ss_pred HhhhhHHHHHHHH
Confidence 9988888876644
No 235
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.07 E-value=0.0036 Score=56.18 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=57.5
Q ss_pred ccccchhhhHHHHHHhccchhh---hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-
Q psy6102 266 PLVLNQMEDVIRTIKNSGNEYF---KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA- 341 (426)
Q Consensus 266 P~~~i~ilk~a~~~~~~G~~~f---~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~- 341 (426)
|.......+...++.+++...- ...-+++|+..|++||.+ +|....+++++|.+|..++.
T Consensus 22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----------------~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----------------NPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----------------CCchHHHHHHHHHHHHHHHhh
Confidence 3434444445555555555322 234677788888888888 99999999999999988764
Q ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHH
Q psy6102 342 ----------YKRAINLCDDILLMEPNNVKALFRR 366 (426)
Q Consensus 342 ----------~~~Ai~~~~~AL~ldp~~~kal~~l 366 (426)
|++|..++++|..++|+|......+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 8899999999999999987644333
No 236
>KOG3824|consensus
Probab=97.01 E-value=0.0028 Score=61.13 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=66.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 331 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 331 nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
+.|.-..+.|+.++|...+..||+++|++++++..+|+....-.+.-+|-.+|-+||.++|.|.+++.+.++..-
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 344444578999999999999999999999999999999999999999999999999999999998877665443
No 237
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.01 E-value=0.02 Score=65.48 Aligned_cols=145 Identities=8% Similarity=-0.013 Sum_probs=79.8
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHH------------Hhhcccch-------hhhh----hhcCcchHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI------------KWYNQSQS-------KTQQ----KHFRSYYTAALLNM 332 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~------------~~~~~~~~-------~~~~----~~~~p~~~~~~~nl 332 (426)
...|..+...|.+.|++++|+..|.+..+.- ..+..... .+.- ..+.|+ ...|..+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaL 585 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence 3456666777777788888887776665420 00000000 0000 111232 3455556
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhh
Q psy6102 333 AAVQLKFKAYKRAINLCDDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRH 409 (426)
Q Consensus 333 A~~~~~lg~~~~Ai~~~~~AL~ld-p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~ 409 (426)
-.+|.+.|++++|++.+++..+.+ +.+...|..+..+|...|++++|++.|+...+. .|+ ...+..+-..+...++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Confidence 666666666776766666666655 345566666666666677777777766666654 343 4455555555555566
Q ss_pred HHHHHHHHHHhhhc
Q psy6102 410 HLNLEKMTYARMFQ 423 (426)
Q Consensus 410 ~~~a~k~~~~k~f~ 423 (426)
.+++.. .+..|..
T Consensus 665 ~eeA~~-l~~eM~k 677 (1060)
T PLN03218 665 LDKAFE-ILQDARK 677 (1060)
T ss_pred HHHHHH-HHHHHHH
Confidence 555543 4555543
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.90 E-value=0.016 Score=65.36 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=87.1
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~ 358 (426)
+..+|..+...|++++|...+.+++........ ......++.++|.+++..|++++|...+.+++.+-..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDV----------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344555666666777777777766665332110 1122457788899999999999999999999886321
Q ss_pred --------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 359 --------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-----DQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 359 --------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-----n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
....+..+|.++...|++++|...+++++.+... ...+...++.+....++..++.+
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2334667889999999999999999999886432 23445556677777777766643
No 239
>KOG1941|consensus
Probab=96.89 E-value=0.013 Score=57.96 Aligned_cols=108 Identities=18% Similarity=0.241 Sum_probs=89.0
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
+.+..+|..+-+.+||++|+.+-.+|+++...+....- . --....+++.+|.++..+|+...|.++|++|.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~----~--~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW----S--LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch----h--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 45788999999999999999999999999765542100 0 12234578889999999999999999999998774
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 357 ------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 357 ------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
+.++..+.-+|.+|...|+.+.|..-|+.|...-
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 5567888999999999999999999999998763
No 240
>KOG4507|consensus
Probab=96.88 E-value=0.0034 Score=65.14 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=93.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q psy6102 282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY-YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 360 (426)
Q Consensus 282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~-~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ 360 (426)
.|.-.-..|+-..|+.++..|+.. .|. ......++|.+.++.+-...|-..+.++|.+....+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~----------------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep 676 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNL----------------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP 676 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhcc----------------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence 344444578899999999999987 332 233567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
-.+|.+|.++..+.+.+.|++.|+.|+.++|+++++...|..+..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999999999999988887766
No 241
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.88 E-value=0.0017 Score=40.99 Aligned_cols=33 Identities=15% Similarity=0.537 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
+|+|++|.++..+|++++|++.|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 366777777777777777777777777777753
No 242
>KOG3364|consensus
Probab=96.86 E-value=0.021 Score=48.85 Aligned_cols=88 Identities=15% Similarity=0.290 Sum_probs=73.2
Q ss_pred cchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102 323 SYYTAALLNMAAVQLKFK---AYKRAINLCDDILL-MEP-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397 (426)
Q Consensus 323 p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~AL~-ldp-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~ 397 (426)
.-.....+++|+++.+.. +..+.+..++..++ -.| ..-+.+|.+|..++.+++|+.|+.+++..++.+|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344567889999998765 45667888888886 334 4477899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhH
Q psy6102 398 KEIAFVRKQMRHH 410 (426)
Q Consensus 398 ~~l~~i~~~l~~~ 410 (426)
.....++..+.+.
T Consensus 109 ~Lk~~ied~itke 121 (149)
T KOG3364|consen 109 ELKETIEDKITKE 121 (149)
T ss_pred HHHHHHHHHHhhc
Confidence 9988888876543
No 243
>KOG3081|consensus
Probab=96.82 E-value=0.027 Score=53.62 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102 327 AALLNMAAVQLKF----KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 402 (426)
Q Consensus 327 ~~~~nlA~~~~~l----g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~ 402 (426)
..+..+|.+|.++ +.+.+|.-.|++.-+.-|..+..+...+.|++.+++|++|...++.||.-++++++++.++--
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3445566666553 356777777777776666677777777777777777777777777777777777777777777
Q ss_pred HHHHHhhHHHHH
Q psy6102 403 VRKQMRHHLNLE 414 (426)
Q Consensus 403 i~~~l~~~~~a~ 414 (426)
+-..+|+-.+..
T Consensus 250 ~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 250 LALHLGKDAEVT 261 (299)
T ss_pred HHHHhCCChHHH
Confidence 776666664444
No 244
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.82 E-value=0.0053 Score=44.04 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 369 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a 369 (426)
++++.+|..++++|+|.+|..+++.+|+++|+|..|.--...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678899999999999999999999999999998876554443
No 245
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.82 E-value=0.012 Score=64.62 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
...|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.++++|++...+..+..++.
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 456778888899999999999887653 2334 46678888899999999999999999999999999989999999999
Q ss_pred HHhhHHHHHHHHHHhhhc
Q psy6102 406 QMRHHLNLEKMTYARMFQ 423 (426)
Q Consensus 406 ~l~~~~~a~k~~~~k~f~ 423 (426)
..++.+++.+ +++.|-.
T Consensus 540 ~~G~~~~A~~-v~~~m~~ 556 (697)
T PLN03081 540 SSGRQAEAAK-VVETLKR 556 (697)
T ss_pred hCCCHHHHHH-HHHHHHH
Confidence 9999988875 5555543
No 246
>KOG1586|consensus
Probab=96.81 E-value=0.026 Score=52.73 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=90.4
Q ss_pred HHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~-g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
.+.....+|..|-.. .++++||.+|++|-+.... .+....--.++..-|...-.+++|.+|+..|+++.
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~----------ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG----------EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777666 8999999999999987421 11133344567777777888999999999999988
Q ss_pred HhCCCC------HH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHhh
Q psy6102 354 LMEPNN------VK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--ILKEIAFVRKQMRH 409 (426)
Q Consensus 354 ~ldp~~------~k-al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~--a~~~l~~i~~~l~~ 409 (426)
.-.-+| ++ .++.-|.|++-..+.-.|...+++..+++|.-.. -...+..+...+.+
T Consensus 182 ~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE 246 (288)
T KOG1586|consen 182 RSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEE 246 (288)
T ss_pred HHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhh
Confidence 766554 23 4566788999999999999999999999997543 23344444444433
No 247
>KOG1586|consensus
Probab=96.79 E-value=0.047 Score=51.07 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=93.5
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
.+.++.+..-||.|--.++|..|=..|.+|-++.-+... ..+-...|..-+.||-+ .++.+|+.+++++
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~s----------khDaat~YveA~~cykk-~~~~eAv~cL~~a 99 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGS----------KHDAATTYVEAANCYKK-VDPEEAVNCLEKA 99 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC----------chhHHHHHHHHHHHhhc-cChHHHHHHHHHH
Confidence 346677778888888899999999999999887433321 33456677777778755 4999999999999
Q ss_pred HHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHHhhHHHHHH
Q psy6102 353 LLMEPNN------VKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPNDQQ------ILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 353 L~ldp~~------~kal~~lg~a~~~l-g~~~~Al~~l~kAl~l~P~n~~------a~~~l~~i~~~l~~~~~a~k 415 (426)
+++--+- ++-+..+|..|..- .++++|+.+|++|-+....... .....+.....++++.++.+
T Consensus 100 ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~ 175 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAID 175 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886432 55677888888665 9999999999999887654321 22222333344556665543
No 248
>KOG4814|consensus
Probab=96.77 E-value=0.0097 Score=62.43 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=90.2
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
.+.+.+..+|+.++|..|++.|...+..++... .+...+....+++.||+.+.+.+.|.+++.+|=+.+|
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~----------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN----------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh----------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 467888999999999999999999998753321 1455688999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
.++-.-+.+-++....+.-++|+.+..+.....
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999999999999999999999998877654
No 249
>PLN03077 Protein ECB2; Provisional
Probab=96.77 E-value=0.027 Score=63.32 Aligned_cols=120 Identities=8% Similarity=0.011 Sum_probs=89.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF 364 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~ 364 (426)
.+.+.|++++|..+|.+..+. ..+.| +...|..+..++.+.|++++|.+.+++. .+.|+ +..|-
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~-------------~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~ 661 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEK-------------YSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWG 661 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHH-------------hCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHH
Confidence 344455555555555554422 11133 3578888999999999999999988764 45564 66677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
.+-.++..-++.+.|....+++++++|++......+..++...++.+++.+ +.+.|
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~-vr~~M 717 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR-VRKTM 717 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH-HHHHH
Confidence 777777888999999999999999999999999999999999999888765 34444
No 250
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.74 E-value=0.038 Score=63.24 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFV 403 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld-p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i 403 (426)
..|..+..++.+.|++++|.+.+.+.++.. +-+...|..+..+|...|++++|++.|++..+. .| +...+..+-..
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~g 728 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 344445555555555555555555555433 234455555555666666666666666555432 23 34445555555
Q ss_pred HHHHhhHHHHHHHHHHhhh
Q psy6102 404 RKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 404 ~~~l~~~~~a~k~~~~k~f 422 (426)
+...++.+++.+ +|..|.
T Consensus 729 y~k~G~~eeAle-lf~eM~ 746 (1060)
T PLN03218 729 LCEGNQLPKALE-VLSEMK 746 (1060)
T ss_pred HHHCCCHHHHHH-HHHHHH
Confidence 555555555543 444443
No 251
>KOG1915|consensus
Probab=96.74 E-value=0.041 Score=56.23 Aligned_cols=130 Identities=13% Similarity=0.152 Sum_probs=108.8
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
....|...|..--.++++..|...|.+||+. +..+..+|...|.+-++.+....|....++|+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv----------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV----------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 4566778888888899999999999999998 899999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
+-|.--+.||..-..-..+|+...|.+.|++=+++.|+-. ++...-....+. +.-+..|..|+++.
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRy-keieraR~IYerfV 201 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRY-KEIERARSIYERFV 201 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999754 333333333322 22345567777763
No 252
>KOG1308|consensus
Probab=96.74 E-value=0.0005 Score=67.12 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=72.6
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
+..|.+++|++.|..+|.++|.....|-.+|.+++.++....|+.+|..|++++|+...-....+...+.++...++.+.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999988888888888888887776654
No 253
>KOG0545|consensus
Probab=96.72 E-value=0.012 Score=55.33 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLM--------EPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQA 386 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l--------dp~~----------~kal~~lg~a~~~lg~~~~Al~~l~kA 386 (426)
.+.++...|+-+++.|+|.+|...|..|+.. .|.. .-.+.+.++|++..|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3567889999999999999999999998743 2333 447899999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 387 LDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 387 l~l~P~n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
|..+|.|..++...+.+....=+..+|++.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D 286 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKAD 286 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence 999999999999998888877676666653
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.05 Score=47.05 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=68.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPN----------------------NVKALFRRGRAQVSMNNFEQGLQDYEQA 386 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~----------------------~~kal~~lg~a~~~lg~~~~Al~~l~kA 386 (426)
+...|......++...++..+.+++.+-.. ...++..++.++...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344455666778899999999999987421 1557788888899999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 387 LDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 387 l~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
+.++|-+..++..+-.++...|+..++.+
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999987764
No 255
>KOG1585|consensus
Probab=96.69 E-value=0.026 Score=53.07 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=114.1
Q ss_pred hchhhhhHhhhcc-hHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchhhCCcccccchhhhH
Q psy6102 197 YYNQGALEKKRGI-TEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDV 275 (426)
Q Consensus 197 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~~~~~P~~~i~ilk~ 275 (426)
|-+-+.+++..+. .++++-++.+..-++..+.|++--..-.. .....+..+..++-..+..+++.|..
T Consensus 41 fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake----~~klsEvvdl~eKAs~lY~E~Gspdt------- 109 (308)
T KOG1585|consen 41 FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE----LSKLSEVVDLYEKASELYVECGSPDT------- 109 (308)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHhCCcch-------
Confidence 3355555444443 45666678777777888877764442211 11122224455555666667888773
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH----
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD---- 351 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~---- 351 (426)
+-.-.+.+-...+.-+.++|+..|++++.++..... ...-.+++...+.++.++..|.+|-..+.+
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 333445555667788899999999999998643222 334467888889999999999998776654
Q ss_pred HHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 352 ILLME--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 352 AL~ld--p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
+++.+ ++-.+++...-.+|+...+|..|..+|+...++.
T Consensus 180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 33343 4445666666666777789999999999987763
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.69 E-value=0.018 Score=59.25 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=26.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102 330 LNMAAVQLKFKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQA 386 (426)
Q Consensus 330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~--~~kal~~lg~a~~~lg~~~~Al~~l~kA 386 (426)
..+|.|..++|+.++|++.+...++..|. +...++++-.++..+++|.++...+.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34444444444444444444444444432 2334444444444444444444444443
No 257
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.65 E-value=0.012 Score=64.59 Aligned_cols=142 Identities=10% Similarity=-0.027 Sum_probs=72.9
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHH------------Hhhcccchhhhhh-------h-cCcchHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI------------KWYNQSQSKTQQK-------H-FRSYYTAALLNMAAV 335 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~------------~~~~~~~~~~~~~-------~-~~p~~~~~~~nlA~~ 335 (426)
...|..+...|.+.|++++|+..|.+..+.- ..+......+.+. + --+.+..++..+..+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 4456777777888888888888887765420 0000000000000 0 013334455556666
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
|.+.|++++|.+.+++..+ .+...|..+..+|...|+.++|++.|++.++. .|+.. ....+-......+..+++
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-TFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhcCCcHHHH
Confidence 6666666666666655432 24456666666666666666666666665553 34333 233333333444555544
Q ss_pred HHHHHHhhh
Q psy6102 414 EKMTYARMF 422 (426)
Q Consensus 414 ~k~~~~k~f 422 (426)
.+ .|..|.
T Consensus 446 ~~-~f~~m~ 453 (697)
T PLN03081 446 WE-IFQSMS 453 (697)
T ss_pred HH-HHHHHH
Confidence 33 444443
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.59 E-value=0.0099 Score=62.17 Aligned_cols=104 Identities=7% Similarity=0.042 Sum_probs=81.2
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..+...|..+...|+.++|++.|++|+..-. +......-+++.+|.|++-+.+|++|.+++.+.++
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~------------~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQS------------EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh------------hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 556678899999999999999999999986411 11334567899999999999999999999999888
Q ss_pred hCCC-CHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHhC
Q psy6102 355 MEPN-NVKALFRRGRAQVSMNNF-------EQGLQDYEQALDLL 390 (426)
Q Consensus 355 ldp~-~~kal~~lg~a~~~lg~~-------~~Al~~l~kAl~l~ 390 (426)
.+.- ..-..|..|.|+..+++. ++|.+.+.++-.+-
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 6653 233345668889999999 78888888776553
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.028 Score=51.18 Aligned_cols=105 Identities=21% Similarity=0.200 Sum_probs=80.7
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+.....++..++..+++++|+..++.++..-.. ......+-.++|.+.+++|.+++|+..++..-
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~- 153 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTKD-------------ENLKALAALRLARVQLQQKKADAALKTLDTIK- 153 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-
Confidence 4556788999999999999999999999975110 11234466789999999999999998764432
Q ss_pred hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102 355 MEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 355 ldp~-~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~ 394 (426)
++. .+..--.+|.++..+|+-++|+..|++|+..+++..
T Consensus 154 -~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 154 -EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 111 233456789999999999999999999999985543
No 260
>KOG2471|consensus
Probab=96.52 E-value=0.0046 Score=63.02 Aligned_cols=124 Identities=9% Similarity=0.048 Sum_probs=93.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
.+..+.-..+.+|-.|+|.+|.+.....= .. .+..--..|. ..-+|.|+|-++++++.|.-++.++.+|
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-------i~--~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kA 309 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSN-------IH--KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKA 309 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcc-------cc--cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence 45566677777888888777776653221 10 0111111232 2336789999999999999999999999
Q ss_pred HH-h--------C---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 353 LL-M--------E---------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 353 L~-l--------d---------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
|+ . . ....+.+|+.|..|...|+.-.|.+||.+|....-.|+..|.+++.|-...
T Consensus 310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 96 1 1 234789999999999999999999999999999999999999999986643
No 261
>KOG4340|consensus
Probab=96.52 E-value=0.032 Score=53.93 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=72.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy6102 287 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR 366 (426)
Q Consensus 287 f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~l 366 (426)
.+..+|..||++...-.+. .|.+...+..+|.||+...+|..|..+|++...+-|...+.-+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er----------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER----------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4455667777666655555 788888999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q psy6102 367 GRAQVSMNNFEQGLQDYEQA 386 (426)
Q Consensus 367 g~a~~~lg~~~~Al~~l~kA 386 (426)
++.++..+.+..|+......
T Consensus 85 AQSLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLL 104 (459)
T ss_pred HHHHHHhcccHHHHHHHHHh
Confidence 99999999999999776544
No 262
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.51 E-value=0.0036 Score=37.85 Aligned_cols=31 Identities=39% Similarity=0.761 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102 362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392 (426)
Q Consensus 362 al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~ 392 (426)
+++++|.++..+++++.|+.+|+++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555443
No 263
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.46 E-value=0.038 Score=62.32 Aligned_cols=127 Identities=12% Similarity=0.039 Sum_probs=94.5
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
....+|..++..|++++|...+.++++..+... ......++..+|.++...|++++|...+.+++.+..
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~ 522 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTW-----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR 522 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 334577888999999999999999998521100 111245678899999999999999999999997643
Q ss_pred CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 358 NN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--------DQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 358 ~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--------n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
.. ..++..+|.++...|++++|...+++++.+... ...+...++.+....++.+++..
T Consensus 523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 21 346788899999999999999999999986321 12334456667777777777653
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.35 E-value=0.0059 Score=36.81 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
.++.++|.++..++++++|+.+++++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 478899999999999999999999999998863
No 265
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.34 E-value=0.057 Score=53.96 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=84.3
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
+......+..+.+.|++++|.+...++++.. -+.+++... -.++.+++..=++..++.++.
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-----------------~D~~L~~~~--~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ-----------------WDPRLCRLI--PRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----------------cChhHHHHH--hhcCCCCchHHHHHHHHHHHh
Confidence 4445556667778899999999999999861 112222222 234677788888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
.|+++..++.+|+.++..+.+.+|..+|+.|+..-|+. ..+..++.+...+++..+++
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAE 381 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHH
Confidence 88888888888888888888888888888888877654 34556677777776665554
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.33 E-value=0.14 Score=52.90 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLNLEKM 416 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~~l~~~~~a~k~ 416 (426)
.-+-+++|+|...+|+.++|++.++..++..|. +..+..+|-.++..++.+.+.++-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 445678999999999999999999999998875 567999999999999999988863
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.33 E-value=0.007 Score=39.54 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 362 ALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 362 al~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
+|.++|.+|..+|++++|+++|+++|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566666666666666666666443
No 268
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.32 E-value=0.081 Score=49.41 Aligned_cols=98 Identities=12% Similarity=0.183 Sum_probs=73.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK-------RAINLCDDILLMEP 357 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~-------~Ai~~~~~AL~ldp 357 (426)
.+-....+++|+..|.-||-...-... -....+.++..+|++|..+++.+ .|++.|.+|+....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~---------~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKE---------KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED 156 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 666678899999999999876332211 12245789999999999999844 55555555554432
Q ss_pred ------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102 358 ------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391 (426)
Q Consensus 358 ------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P 391 (426)
+....+|.+|.+.+.+|++++|+..|.+++..--
T Consensus 157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 2367899999999999999999999999997643
No 269
>KOG3824|consensus
Probab=96.30 E-value=0.017 Score=55.90 Aligned_cols=110 Identities=12% Similarity=0.140 Sum_probs=83.8
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+......+....+.|+.++|...|..|+.+ .|.++.++...|.....-++.-+|-++|-+||.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALAL----------------APTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 4445556666778899999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC-CcHHHHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLP-NDQQILKEI 400 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P-~n~~a~~~l 400 (426)
++|.|.+|+.+++...-. -.++-+.+....+.+..-| +|......+
T Consensus 179 isP~nseALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m 229 (472)
T KOG3824|consen 179 ISPGNSEALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMM 229 (472)
T ss_pred eCCCchHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 999999999999875322 2334444555444444333 334333333
No 270
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.30 E-value=0.0079 Score=37.80 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
.+++++|.|+.++|++++|+..++++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999999974
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.28 E-value=0.008 Score=39.25 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 328 ALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
+|.++|.+|.++|+|++|+++|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999976553
No 272
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.28 E-value=0.0055 Score=56.94 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=57.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 334 ~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~ 395 (426)
....+.++.+.|.+.|++||.+-|.+...||++|......|+++.|.+.|++.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 45567899999999999999999999999999999999999999999999999999998753
No 273
>KOG1915|consensus
Probab=96.27 E-value=0.053 Score=55.41 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=54.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-hHHH
Q psy6102 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR-HHLN 412 (426)
Q Consensus 334 ~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~-~~~~ 412 (426)
..-+++++++.+...|.+-|+.+|.+..+|...|..-..+|+.+.|...|+-|+...--+...+.....+--.+. ..-+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 344567777777777777777777777777777777777777777777777777653333222222222222221 2224
Q ss_pred HHHHHHHhhhc
Q psy6102 413 LEKMTYARMFQ 423 (426)
Q Consensus 413 a~k~~~~k~f~ 423 (426)
..|.+|++++.
T Consensus 525 kaR~LYerlL~ 535 (677)
T KOG1915|consen 525 KARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHH
Confidence 45667776654
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.27 E-value=0.031 Score=52.99 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=67.2
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a 396 (426)
...-+.-|++-|...++.|+|++|+..++.+....|-. .++.+.++.+++..++|++|+...++-+.+.|.++.+
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 34457789999999999999999999999999887644 7899999999999999999999999999999988653
No 275
>KOG2471|consensus
Probab=96.24 E-value=0.013 Score=59.95 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=77.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHH-HHHhhccc-chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWYNQS-QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~-~~~~~~~~-~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
....|.++|-++|+.+.|..++.+|.+|++ .+...... .+.............+++|.|..|+..|++-.|.+++.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 344678999999999999999999999996 22222211 1111111223456679999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHc
Q psy6102 353 LLMEPNNVKALFRRGRAQVSM 373 (426)
Q Consensus 353 L~ldp~~~kal~~lg~a~~~l 373 (426)
...--.++..|.++|.|.++.
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999987653
No 276
>KOG2396|consensus
Probab=96.20 E-value=0.12 Score=53.28 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy6102 295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374 (426)
Q Consensus 295 Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg 374 (426)
-...|+.|... -+.++.+|.+...-..+.+.+.+--..|.++|...|++++.|..-|.=.+..+
T Consensus 90 Iv~lyr~at~r----------------f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 90 IVFLYRRATNR----------------FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHh----------------cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence 34567888776 67789999999877777788999999999999999999999999998877777
Q ss_pred C-hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 375 N-FEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 375 ~-~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
. .+.|.+.+.++|+.+|+++..+...=++...
T Consensus 154 ~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred cchHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 6 8999999999999999999888766555443
No 277
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.17 E-value=0.044 Score=43.90 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHhhHH
Q psy6102 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHL 411 (426)
Q Consensus 345 Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n--~~a~~~l~~i~~~l~~~~ 411 (426)
.+..++++++.+|++..+.|.+|.++...|++++|++.+-.+++.+|+. ..+...+-.+-..++...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4567888999999999999999999999999999999999999998765 788888888888888754
No 278
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.052 Score=51.99 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 404 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~ 404 (426)
...+..++=..+++.++++.|..+.++.|.++|.++..+.-+|.+|..+|.+.-|+++++..++..|+++.+.....++.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 35567777788999999999999999999999999999999999999999999999999999999999988776655554
Q ss_pred HH
Q psy6102 405 KQ 406 (426)
Q Consensus 405 ~~ 406 (426)
..
T Consensus 260 ~l 261 (269)
T COG2912 260 EL 261 (269)
T ss_pred HH
Confidence 43
No 279
>KOG3081|consensus
Probab=96.06 E-value=0.085 Score=50.30 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=82.3
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.|.+|...+. ..+.+..|.-.|++--+- .+..+.++...|.|++.+++|++|...++.||.
T Consensus 175 LA~awv~la~---ggek~qdAfyifeE~s~k----------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 175 LAQAWVKLAT---GGEKIQDAFYIFEELSEK----------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHhc---cchhhhhHHHHHHHHhcc----------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4555554433 234466777777665553 567788999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCcHHHH
Q psy6102 355 MEPNNVKALFRRGRAQVSMNNFEQGLQ-DYEQALDLLPNDQQIL 397 (426)
Q Consensus 355 ldp~~~kal~~lg~a~~~lg~~~~Al~-~l~kAl~l~P~n~~a~ 397 (426)
-++++++.+.++-.+-..+|.-.++.+ .+.+....+|.++-+.
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999999999999877766 5667777788887543
No 280
>KOG1070|consensus
Probab=95.98 E-value=0.17 Score=57.67 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=98.3
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~ 358 (426)
+..+...|-+.+.+++|.++|+.-++- -.....+|...|..+++..+-++|...+.+||+--|.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK----------------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK----------------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH----------------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 344556666666777777777666665 2356789999999999999999999999999999987
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 359 --NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 359 --~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
+.+..-..|++-+..|+.+.+...|+-.+.-+|.-...|..+.......+..+ -.|.+|+|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~-~vR~lfeRv 1660 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK-YVRDLFERV 1660 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH-HHHHHHHHH
Confidence 89999999999999999999999999999999999888887777666544332 223444444
No 281
>KOG1585|consensus
Probab=95.95 E-value=0.29 Score=46.21 Aligned_cols=133 Identities=11% Similarity=0.120 Sum_probs=87.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+..|..-++.+-..++|++|..++.+|++....... --.-+..|-..|.....+..+.++...+++|..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs----------lfhAAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS----------LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666666677778899999999888875221110 112345667777777888889999999999887
Q ss_pred hC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HH---HHHHHHHHHHHHhhHHHHHHHH
Q psy6102 355 ME-----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQ---ILKEIAFVRKQMRHHLNLEKMT 417 (426)
Q Consensus 355 ld-----p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~---a~~~l~~i~~~l~~~~~a~k~~ 417 (426)
+- |+-+-.-..++-=....-+.++|+..|++++.+--.+ .. ......+++.+++++.++...+
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 73 5555445555555666778899999999988764433 22 3334445555666777666543
No 282
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.94 E-value=0.038 Score=45.74 Aligned_cols=95 Identities=9% Similarity=0.119 Sum_probs=68.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q psy6102 282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----------AYKRAINLCD 350 (426)
Q Consensus 282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-----------~~~~Ai~~~~ 350 (426)
.+..+|++||+-+|++..+..+..... +.....+....|.++.++. -.-.|++++.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-------------~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s 68 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-------------DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFS 68 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-------------CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHH
Confidence 467789999999999999999987321 1111244555555554433 2456788888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
++..+.|..+..+|.+|.=+-....|++++.-.+++|.+
T Consensus 69 ~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 69 RAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888888888888888877777788888887777765
No 283
>KOG2610|consensus
Probab=95.88 E-value=0.12 Score=50.90 Aligned_cols=107 Identities=10% Similarity=-0.025 Sum_probs=55.3
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch------------------hhh----hhhcCcchHHHHHHHHHHH
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS------------------KTQ----QKHFRSYYTAALLNMAAVQ 336 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~------------------~~~----~~~~~p~~~~~~~nlA~~~ 336 (426)
....+...+.+|++.+|...+.+.|+-.|....+.. .+. ...-.|.+.-+.-.+|.++
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 334455566677777777777777765221111100 000 0000133333444455555
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102 337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385 (426)
Q Consensus 337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~k 385 (426)
...|-|++|.+..+++|+++|.+.-+...++.++...+++.+++++.++
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5666666666666666666666666666666666666666666655543
No 284
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.86 E-value=0.13 Score=53.96 Aligned_cols=106 Identities=8% Similarity=0.024 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHH
Q psy6102 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN----NVKALF 364 (426)
Q Consensus 289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~----~~kal~ 364 (426)
..+...|........+. .|...-.++..|.++...|+.++|++.+++++..... ..-.+|
T Consensus 246 ~~~~~~a~~lL~~~~~~----------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR----------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF 309 (468)
T ss_pred CCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence 44566666666666666 8999999999999999999999999999999854432 345789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHhhH
Q psy6102 365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL-KEIAFVRKQMRHH 410 (426)
Q Consensus 365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~-~~l~~i~~~l~~~ 410 (426)
.+|.++..+.+|++|..+|.+.++.+...+... ...+-|+..+++.
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999877655443 4444555555555
No 285
>PRK10941 hypothetical protein; Provisional
Probab=95.78 E-value=0.069 Score=51.64 Aligned_cols=80 Identities=8% Similarity=0.051 Sum_probs=72.3
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
.+.+.++-..|.+.++|+.|+.+-...+.+ .|.++.-+..||.+|.+++.+..|+.+++.-++.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----------------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF----------------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 455667778899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQV 371 (426)
Q Consensus 356 dp~~~kal~~lg~a~~ 371 (426)
.|+.+.+-.-+.++..
T Consensus 245 ~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 245 CPEDPISEMIRAQIHS 260 (269)
T ss_pred CCCchhHHHHHHHHHH
Confidence 9999998877776643
No 286
>KOG1070|consensus
Probab=95.75 E-value=0.14 Score=58.43 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=115.2
Q ss_pred CCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchh------hCCcccccchhhhHHHHHHhccchhhhhhhHH
Q psy6102 220 RGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEA------ENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMH 293 (426)
Q Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~------~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~ 293 (426)
+..|-+.+.+.-+++.+|+.-.+|=+.+.-+=-+..|+.... ..-.+.+..+.+..-.++.++=+ .-|.-+
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~ee 1514 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEE 1514 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHH
Confidence 345556777777777777766555444321111111221111 11112222222222223333333 334455
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy6102 294 DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 373 (426)
Q Consensus 294 ~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l 373 (426)
.-.+.|.+|.++++ -..+|..|.-+|.+.+.+++|.+.++.-++---...+.|...|..++..
T Consensus 1515 sl~kVFeRAcqycd-----------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1515 SLKKVFERACQYCD-----------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHHHHHHhcc-----------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 55667777777642 2468889999999999999999999999998888999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhHHH
Q psy6102 374 NNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLN 412 (426)
Q Consensus 374 g~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~~l~~~~~ 412 (426)
.+-++|...+++||+.-|. +.+.....+++.-..++.++
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence 9999999999999999998 66666777777666666554
No 287
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.72 E-value=0.18 Score=45.74 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDIL-LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFV 403 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL-~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i 403 (426)
.-.+.+|..+.++|++.+|...|++++ .+--+++..+..++++.+..+++..|...+++..+.+|. .+.-...+++.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 345678999999999999999999998 467789999999999999999999999999999999885 45667788888
Q ss_pred HHHHhhHHHHHH
Q psy6102 404 RKQMRHHLNLEK 415 (426)
Q Consensus 404 ~~~l~~~~~a~k 415 (426)
+...+++.+++.
T Consensus 170 laa~g~~a~Aes 181 (251)
T COG4700 170 LAAQGKYADAES 181 (251)
T ss_pred HHhcCCchhHHH
Confidence 889998887764
No 288
>KOG4814|consensus
Probab=95.53 E-value=0.074 Score=56.11 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l 400 (426)
.+++|.|.-++++.+|..++++|...++.-|.+ ++....++.||..+.+.+.|+++++.|=+.+|.++-.+...
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 477888999999999999999999999876644 78889999999999999999999999999999998877777
Q ss_pred HHHHHHHhhHHHHH
Q psy6102 401 AFVRKQMRHHLNLE 414 (426)
Q Consensus 401 ~~i~~~l~~~~~a~ 414 (426)
-.+-...+...+|-
T Consensus 435 ~~~~~~E~~Se~AL 448 (872)
T KOG4814|consen 435 LQSFLAEDKSEEAL 448 (872)
T ss_pred HHHHHHhcchHHHH
Confidence 66666655555553
No 289
>PLN03077 Protein ECB2; Provisional
Probab=95.33 E-value=0.23 Score=55.92 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=54.3
Q ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHH
Q psy6102 323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLM--EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQILK 398 (426)
Q Consensus 323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l--dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P--~n~~a~~ 398 (426)
+.+...|..+...|.+.|+.++|++.+++.++. .|+. ..+..+-.++.+.|+.++|.+.|+...+..+ -+.....
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 334555666666666666777777666665542 3433 2233344456666667777776666653321 1234555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhh
Q psy6102 399 EIAFVRKQMRHHLNLEKMTYARM 421 (426)
Q Consensus 399 ~l~~i~~~l~~~~~a~k~~~~k~ 421 (426)
.+-.++.+.|+.++|.+ .+++|
T Consensus 630 ~lv~~l~r~G~~~eA~~-~~~~m 651 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYN-FINKM 651 (857)
T ss_pred HHHHHHHhCCCHHHHHH-HHHHC
Confidence 56666666666666654 34443
No 290
>KOG0530|consensus
Probab=95.32 E-value=0.4 Score=45.78 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=95.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNVKALFRR 366 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~ldp~~~kal~~l 366 (426)
+...-..|+.+-..+|.+ +|.+-.+|..|=.|+..++ +..+-+++++++++-+|+|...|..|
T Consensus 55 ~~E~S~RAl~LT~d~i~l----------------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR 118 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRL----------------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR 118 (318)
T ss_pred ccccCHHHHHHHHHHHHh----------------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence 344556677777777777 9999999999988887654 67888999999999999999999999
Q ss_pred HHHHHHcCChH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 367 GRAQVSMNNFE-QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 367 g~a~~~lg~~~-~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
-.+...+|++. .-+++.+.++..+-+|-.++.....+.+..+.++..
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 99999999999 899999999999999999999999999988876654
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.20 E-value=0.49 Score=45.91 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=87.0
Q ss_pred cccchhhhHHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHH
Q psy6102 267 LVLNQMEDVIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345 (426)
Q Consensus 267 ~~~i~ilk~a~~~~~~G~~~f~~g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~A 345 (426)
..+......+..+++.|...++++ +|+.|+..+++|+++++..... .............++..++.+|+..+.++..
T Consensus 26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~--~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM--DKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc--cccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 344455668999999999999999 9999999999999997542110 0111111235677899999999998887654
Q ss_pred HH---HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102 346 IN---LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391 (426)
Q Consensus 346 i~---~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P 391 (426)
.+ ..+.+-.--|+.+..++-.=.++...++.+++.+.+.+.+.--+
T Consensus 104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44 33333344577777775555555558899999999988887654
No 292
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.16 E-value=0.21 Score=48.54 Aligned_cols=96 Identities=8% Similarity=0.066 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS-MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~-lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
+|..+.....+.+..+.|...+.+|++-.+.....|...|..-+. .++.+.|...|+.+++..|.+...+...-..+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566677777788889999999999997777889999999999666 6777779999999999999999999988888888
Q ss_pred HhhHHHHHHHHHHhhhcC
Q psy6102 407 MRHHLNLEKMTYARMFQN 424 (426)
Q Consensus 407 l~~~~~a~k~~~~k~f~~ 424 (426)
+++. +..|.+|++.+..
T Consensus 83 ~~d~-~~aR~lfer~i~~ 99 (280)
T PF05843_consen 83 LNDI-NNARALFERAISS 99 (280)
T ss_dssp TT-H-HHHHHHHHHHCCT
T ss_pred hCcH-HHHHHHHHHHHHh
Confidence 7765 4557788887654
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.07 E-value=0.17 Score=45.78 Aligned_cols=103 Identities=14% Similarity=0.253 Sum_probs=80.5
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.-..+..+|..|++.|+++.|++.|.++.+.... .....++++++-.+.+..+++..+..+..+|-.
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999998886321 235577889999999999999999999999876
Q ss_pred hCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 355 MEPN--N----VKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 355 ldp~--~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
+-.. + .+.-...|..++..++|..|.+.|-.+..-.
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 6432 2 2234445667788899999999887775544
No 294
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.79 E-value=0.048 Score=50.86 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=56.8
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 283 G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
+....+.++.+.|.+.|.+|+++ -|....-|+.+|....+.|+++.|.+.|.++|+++|.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~l----------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALEL----------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhc----------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567889999999999999999 89999999999999999999999999999999999965
No 295
>KOG4507|consensus
Probab=94.58 E-value=0.13 Score=53.79 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=99.0
Q ss_pred HHHhccchhhh-hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 278 TIKNSGNEYFK-LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 278 ~~~~~G~~~f~-~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
.+..++..|++ +|+..+|..+|..|+-..+.. ..-.++..+|-++.++|...+|--.+..|+.--
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h--------------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRH--------------NKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc--------------cccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 34444444444 567889999999999884321 112467889999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH---HHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK---EIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~---~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
|....-+|.+|.++.+++++...+.+|..|.+.+|....+.. ..-.|+..+.+.-++++.-++++.
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~ 348 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTL 348 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999997654333 333445555555555555555544
No 296
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=1.6 Score=39.89 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=105.7
Q ss_pred cHHHHHhhchhhCCcccccchhhhHHHHHHhccchhhhhhhHH---HHHHHHHHHHHHHHhhcccchhhhhhhcCcch--
Q psy6102 251 GVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMH---DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-- 325 (426)
Q Consensus 251 dvl~~I~~l~~~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~---~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-- 325 (426)
+-++.|...-.+++.+.....++- ..--.|..|++..+-+ +|-..|.+++..+..-.. ........+...+
T Consensus 9 qql~~ik~wwkeNGk~li~gviLg---~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~ 84 (207)
T COG2976 9 QQLEAIKDWWKENGKALIVGVILG---LGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGK 84 (207)
T ss_pred HHHHHHHHHHHHCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccc
Confidence 345556666667776664443332 2334566677666555 788889999988642222 1111111122222
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 326 ----TAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-N--VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 326 ----~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~-~--~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
...-..+|..+...+++++|+..++.+|....+ + .-+-.|+|.+...++.+++|+..+.....- .-......
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~e 163 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAE 163 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHH
Confidence 234556778888999999999999999966543 3 345688999999999999999888754321 11234567
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 399 EIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 399 ~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
..+.++...++.+++.. .|.+-.
T Consensus 164 lrGDill~kg~k~~Ar~-ay~kAl 186 (207)
T COG2976 164 LRGDILLAKGDKQEARA-AYEKAL 186 (207)
T ss_pred HhhhHHHHcCchHHHHH-HHHHHH
Confidence 77888888888776643 555543
No 297
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.54 E-value=0.15 Score=39.57 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=55.6
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+....+.|..+|...+.++|+..++++++.... .+....++-.+..+|...|+|.+++++...-+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999997432 345667777888899999999999998776665
Q ss_pred h
Q psy6102 355 M 355 (426)
Q Consensus 355 l 355 (426)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 4
No 298
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.52 E-value=0.3 Score=45.65 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=64.1
Q ss_pred cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348 (426)
Q Consensus 269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~ 348 (426)
....++.|+.+..+++......=+..|+..|.+|++.-+. ....-....+++.+|.++.++|++++|+.+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~----------~~~~~~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF----------PIEGMDEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC----------CCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445566777777777777777777788888888775211 011224467899999999999999999999
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHH
Q psy6102 349 CDDILLMEPNNV-KALFRRGRAQ 370 (426)
Q Consensus 349 ~~~AL~ldp~~~-kal~~lg~a~ 370 (426)
+.+++.....+. ..+..+|.=+
T Consensus 188 fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 188 FSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHH
Confidence 999997654333 4555555533
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.31 E-value=0.2 Score=40.18 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=45.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
..+.++|..|++.+.+..+.......... ......++.++|.++...|++++|+..+++|+++-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS-------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45789999999999999987433221000 11235567788888888888888888888888664
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.28 E-value=0.1 Score=34.35 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
.++.++|.+|..+|++++|+.++.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777766654
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.13 E-value=1.2 Score=45.02 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=84.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------
Q psy6102 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM------------ 355 (426)
Q Consensus 288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l------------ 355 (426)
....|.++...|..|+...+... ........|..++.+..++.++.++|+++.|.+.+++||=.
T Consensus 6 hs~~Y~~~q~~F~~~v~~~Dp~~----l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~ 81 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSHDPNA----LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF 81 (360)
T ss_pred CCHHHHHHHHHHHHHHHccCHHH----HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35678888888888887642211 22333458999999999999999999999999999998722
Q ss_pred --CCC------------C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHH
Q psy6102 356 --EPN------------N---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKE 399 (426)
Q Consensus 356 --dp~------------~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-n~~a~~~ 399 (426)
++. | ..++++....+...|.+.-|++..+-.+.+||. |+-....
T Consensus 82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll 143 (360)
T PF04910_consen 82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL 143 (360)
T ss_pred hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence 111 1 558999999999999999999999999999998 7754333
No 302
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.96 E-value=0.72 Score=36.84 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
+|.+..+.+.+|.+++..|++++|++.+-.+++.++++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999877
No 303
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.92 E-value=1.5 Score=44.88 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=57.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHh
Q psy6102 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----DQQILKEIAFVRKQMR 408 (426)
Q Consensus 333 A~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~----n~~a~~~l~~i~~~l~ 408 (426)
|..++..|+|.+|.-++.=..++.| .+.++.-+|.|++...+|++|..++... -|+ |..+++.+..|.+.+-
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhhh
Confidence 4556789999999999999999999 9999999999999999999999998743 332 2345566666655443
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.91 E-value=0.97 Score=44.64 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=101.1
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..+...+..+.+.|.++.|.....++....+.. ....+.+....|..+...|+..+|+..++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~------------~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS------------ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc------------cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778999999999999999999999888752110 12257788889999999999999999998888
Q ss_pred Hh--CC--------------------------------CCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCc
Q psy6102 354 LM--EP--------------------------------NNVKALFRRGRAQVSM------NNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 354 ~l--dp--------------------------------~~~kal~~lg~a~~~l------g~~~~Al~~l~kAl~l~P~n 393 (426)
.. .. ..+++++.+|.-...+ +..++++..|+.|.+++|..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 71 11 1156778888877777 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q psy6102 394 QQILKEIAFVRKQMRHHLN 412 (426)
Q Consensus 394 ~~a~~~l~~i~~~l~~~~~ 412 (426)
..++..++.....+-....
T Consensus 292 ~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDP 310 (352)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999988888877654443
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.85 E-value=3.2 Score=36.86 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=81.6
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...+.+......+.++.+.+...+.-.--+ .|..+.+-..-|..++..|+|.+|+..++.+..-
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL----------------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVL----------------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344555566666666777777666533333 8999999999999999999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
.|..+-+---++.|+..+++.+-=. +-+.+++.. .++.+....+.+..+
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPSWRR-YADEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcC-CChHHHHHHHHHHHh
Confidence 8988888888899999999865422 123344443 366666666655554
No 306
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.80 E-value=0.15 Score=49.67 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=72.9
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR-RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~-lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l 400 (426)
-+.++.+|...+..-.+.|.|.+.-..|.++|+..|.|++.|.. -+.-+...++++.|...|+++|+++|+++.+|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 58889999999999999999999999999999999999999987 44457788999999999999999999999887655
Q ss_pred HHH
Q psy6102 401 AFV 403 (426)
Q Consensus 401 ~~i 403 (426)
=++
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 444
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.66 E-value=1.1 Score=39.84 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 404 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~ 404 (426)
-...+..+..+-++.++.+++...+...--+.|..++.-.--|..+...|++.+|+..|+.+..-.|..+.+...+..|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35667778888889999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhH
Q psy6102 405 KQMRHH 410 (426)
Q Consensus 405 ~~l~~~ 410 (426)
..+++.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 887754
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.44 E-value=2.4 Score=41.13 Aligned_cols=119 Identities=12% Similarity=0.043 Sum_probs=80.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---
Q psy6102 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLM----EP--- 357 (426)
Q Consensus 286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~l----dp--- 357 (426)
..++|+++.|..+|.|+=..... . +.... ..-...+++.|...+..+ +++.|+.++++|+++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~-~---~~~~~----~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNS-L---DPDMA----EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhc-C---CcHHH----HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 46789999999999999887421 1 11111 233679999999999999 999999999999988 22
Q ss_pred C-------CHHHHHHHHHHHHHcCChHHHH---HHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHH
Q psy6102 358 N-------NVKALFRRGRAQVSMNNFEQGL---QDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 412 (426)
Q Consensus 358 ~-------~~kal~~lg~a~~~lg~~~~Al---~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~ 412 (426)
. ....+..++.+|...+.++... ..++.+-.-.|+.+......-.+.......++
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhH
Confidence 1 1557888899999888776544 44444444567777666333333333333333
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.39 E-value=0.19 Score=33.00 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999886
No 310
>KOG1310|consensus
Probab=93.39 E-value=0.25 Score=51.24 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPNDQQILKEIAF 402 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l---g~~~~Al~~l~kAl~l~P~n~~a~~~l~~ 402 (426)
++-+..-|.=.+.......|+..|.+++..-|.....|-+++.+++.. |+.-.|+.+...|++++|....++..|.+
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 333334444444556788999999999999999999999999998775 78888999999999999999999999999
Q ss_pred HHHHHhhHHHHH
Q psy6102 403 VRKQMRHHLNLE 414 (426)
Q Consensus 403 i~~~l~~~~~a~ 414 (426)
++..+++..++.
T Consensus 454 aL~el~r~~eal 465 (758)
T KOG1310|consen 454 ALNELTRYLEAL 465 (758)
T ss_pred HHHHHhhHHHhh
Confidence 999999998875
No 311
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.38 E-value=0.92 Score=36.32 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=47.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102 335 VQLKFKAYKRAINLCDDILLMEPN---------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391 (426)
Q Consensus 335 ~~~~lg~~~~Ai~~~~~AL~ldp~---------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P 391 (426)
-.++.++|.+|++.+.+.++.... ..-+++++|.++...|++++|+..++.|+++-.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456899999999998888866421 246889999999999999999999999999854
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.36 E-value=0.61 Score=46.08 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=85.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHH-HHHhhcccch-----------------hhhhhhcCcchHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWYNQSQS-----------------KTQQKHFRSYYTAALLNMAAVQ 336 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~-~~~~~~~~~~-----------------~~~~~~~~p~~~~~~~nlA~~~ 336 (426)
.+....+.+..++..|+..+|+......+. .+........ .............++..+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 345567778888888999999999998888 3322210000 0001112344567888888877
Q ss_pred HHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-----------------HHHHHHHHHHHHhCCC
Q psy6102 337 LKF------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF-----------------EQGLQDYEQALDLLPN 392 (426)
Q Consensus 337 ~~l------g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~-----------------~~Al~~l~kAl~l~P~ 392 (426)
..+ +..++++..|.+|+.++|...++|+..|..+..+=+. ..|+.+|-+|+.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 778 8999999999999999999999999999987655221 3488888889888877
No 313
>KOG2610|consensus
Probab=93.10 E-value=0.46 Score=46.85 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=71.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---H
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM-EPNN---V 360 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l-dp~~---~ 360 (426)
-+...|-|++|.+.-.+|+++ ++.+.-+....|.++.-.+++.++.+...+.-.. +... .
T Consensus 184 gL~E~g~y~dAEk~A~ralqi----------------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas 247 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQI----------------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS 247 (491)
T ss_pred hHHHhccchhHHHHHHhhccC----------------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh
Confidence 344566777777777777777 9999999999999999999999999876544321 1122 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH--HhCCCcHHHH
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQAL--DLLPNDQQIL 397 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl--~l~P~n~~a~ 397 (426)
--|..-|.++..-+.|+.|++.|.+-+ ++..+|..++
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDAVAR 286 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccchhhh
Confidence 346677888888999999999987654 4555666443
No 314
>KOG2300|consensus
Probab=92.99 E-value=2.3 Score=44.03 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=93.8
Q ss_pred CcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH
Q psy6102 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343 (426)
Q Consensus 264 ~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~ 343 (426)
..|.........+...+-+|.-...-+.|+.|...|..|.+.... ....+.+-.|+|..|++.++-+
T Consensus 355 r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-------------~dl~a~~nlnlAi~YL~~~~~e 421 (629)
T KOG2300|consen 355 RFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-------------IDLQAFCNLNLAISYLRIGDAE 421 (629)
T ss_pred hCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-------------HHHHHHHHHhHHHHHHHhccHH
Confidence 334333444456777888888888899999999999999987432 2335667889999999977754
Q ss_pred HHHHHHHHHH-HhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--------HHHHHHHHH
Q psy6102 344 RAINLCDDIL-LMEPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--------ILKEIAFVR 404 (426)
Q Consensus 344 ~Ai~~~~~AL-~ldp~~----------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~--------a~~~l~~i~ 404 (426)
. +.+++ .+.|.| ..++|..|.-.+.++++.+|...+.+.|+.. |.+ .+..++.+-
T Consensus 422 d----~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~ 495 (629)
T KOG2300|consen 422 D----LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVF 495 (629)
T ss_pred H----HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHH
Confidence 3 33334 344543 5578999999999999999999999999885 322 334455555
Q ss_pred HHHhhHHHHH
Q psy6102 405 KQMRHHLNLE 414 (426)
Q Consensus 405 ~~l~~~~~a~ 414 (426)
..+++..++.
T Consensus 496 lslgn~~es~ 505 (629)
T KOG2300|consen 496 LSLGNTVESR 505 (629)
T ss_pred HHhcchHHHH
Confidence 5566666554
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=1.6 Score=45.97 Aligned_cols=106 Identities=18% Similarity=0.061 Sum_probs=86.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCH
Q psy6102 282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC-DDILLMEPNNV 360 (426)
Q Consensus 282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~-~~AL~ldp~~~ 360 (426)
+...+...++...|......++.. +|.+..++.++|.+....|....++... ..+....|++.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV----------------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc----------------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence 455555666666777777777777 9999999999999998887766665554 55999999999
Q ss_pred HHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 361 KALFRR------GRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 361 kal~~l------g~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
..+..+ |..+..+++..++...++++..+.|+++.+...+-..
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 988777 8889999999999999999999999997766655544
No 316
>KOG3617|consensus
Probab=92.49 E-value=2 Score=47.03 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDI----------LLMEPN----------NVKALFRRGRAQVSMNNFEQGLQDYEQ 385 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~A----------L~ldp~----------~~kal~~lg~a~~~lg~~~~Al~~l~k 385 (426)
-..|++.|.-+...++.+.|+++|+++ |.-+|. +...|..-|+-+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 457899999999999999999999875 333443 345667778888999999999999998
Q ss_pred HHHh---------------------CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 386 ALDL---------------------LPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 386 Al~l---------------------~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
|-.. ...|..+-..+++.+...++..++.+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 8552 35677788888888888888877754
No 317
>KOG0882|consensus
Probab=92.36 E-value=0.069 Score=54.02 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=48.6
Q ss_pred eEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCc
Q psy6102 26 RMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGE 90 (426)
Q Consensus 26 ~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~ 90 (426)
-|.|+++.+-.|.-++-|..+|. .+|+++.+|.||++-+.+|.||.......+|.
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQ----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCc----------cceecccccCceEEEEeeccccceeeccccce
Confidence 89999999999999999999994 68899999999999999999998755555543
No 318
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.30 E-value=0.85 Score=44.26 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=63.8
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
......++..++..+...++++.+++.+++.+.++|-+-.+|.++=.+|+..|+...|+..|++.-++
T Consensus 149 ~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 149 EELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999998774
No 319
>KOG2053|consensus
Probab=92.30 E-value=1.1 Score=49.15 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=83.8
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~ 358 (426)
..-.|..+++.|.+++|..+.+ ++.. ..+.+...+--+-.||..++++++|...|++++..+|+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le-~~~~---------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLE-ALYG---------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHh-hhcc---------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 3445677889999999984443 3332 15667788888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 359 ~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
.+.++.+=+||.+.+.|.+=.+.--+..+..|+++-.....-.+..
T Consensus 110 -eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 110 -EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 9999999999999988877555444455577888765554444443
No 320
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.18 E-value=3.2 Score=40.07 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=80.4
Q ss_pred HHHHhccchhhh----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch-HHHHHHHHHHHHHcc-------CHHH
Q psy6102 277 RTIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFK-------AYKR 344 (426)
Q Consensus 277 ~~~~~~G~~~f~----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-~~~~~nlA~~~~~lg-------~~~~ 344 (426)
...+.+|..+.. ..|+.+|...|.+|.+. .... ..+.+.++.+|..-. +...
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~ 173 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKK 173 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----------------CChhHHHHHHHHHHHHHcChhhhcccHHHHh
Confidence 345556666665 55999999999999986 2222 345788888887641 3347
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 345 AINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 345 Ai~~~~~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
|+..|.++.... ++.+.+++|.+|.. ..++.+|+..|.+|.+... ..+...+..+
T Consensus 174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~ 232 (292)
T COG0790 174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM 232 (292)
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 899998888777 89999999988855 3588999999999999876 7777777733
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.17 E-value=1.9 Score=35.73 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCcHHHH
Q psy6102 332 MAAVQLKFKAYKRAINLCDDILLMEPNNV---KALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQIL 397 (426)
Q Consensus 332 lA~~~~~lg~~~~Ai~~~~~AL~ldp~~~---kal~~lg~a~~~lg~-----------~~~Al~~l~kAl~l~P~n~~a~ 397 (426)
+|.-+++.|++-+|++..+..+...+++. -.+..-|.++..+.. +-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999998887765 456666887766533 3459999999999999998888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q psy6102 398 KEIAFVRKQMRHHLNLEKMTYA 419 (426)
Q Consensus 398 ~~l~~i~~~l~~~~~a~k~~~~ 419 (426)
..++.-.....-+++..++.-+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 8888776666677766655433
No 322
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.13 E-value=0.48 Score=31.02 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHHHhCCCc
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQD--YEQALDLLPND 393 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~--l~kAl~l~P~n 393 (426)
+.++.+|..+..+|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566666777777777777777 33666666554
No 323
>KOG3617|consensus
Probab=91.94 E-value=1.9 Score=47.33 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=80.1
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHH----HhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI----KWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 351 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~----~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~ 351 (426)
-..|++.+..+-..+|.+.|+++|.++=... .-..+.....+..-....+..+|..-|..+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3457777877888888888888888763211 000000001111111344557888889989999999999999988
Q ss_pred HHHh---------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 352 ILLM---------------------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 352 AL~l---------------------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
|-.. ...+-.|-|.+|..|...|++.+|+.+|.+|..+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7543 2456778999999999999999999999988554
No 324
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.93 E-value=1.3 Score=50.11 Aligned_cols=122 Identities=9% Similarity=0.060 Sum_probs=87.8
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-------CHHHHHHHHHH
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-------AYKRAINLCDD 351 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-------~~~~Ai~~~~~ 351 (426)
+....+++...+.|+.|+..|.+.-.-.|. ...--++.+..|.+.+..- .+.+|+..+++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPG-------------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY 544 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCC-------------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 455667777888899999999887766332 1233456777777776532 35555555543
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
|.-.|.-+--|...|.+|..+|+|++-+++|..|++..|+++++-.....+--++.+.-...
T Consensus 545 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (932)
T PRK13184 545 -LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH 606 (932)
T ss_pred -hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 23346667788888999999999999999999999999999988877777766665554333
No 325
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.88 E-value=6.5 Score=38.98 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=71.0
Q ss_pred CcchHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 322 RSYYTAALLNMAAVQLKFKA------------YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~------------~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
+|.++.+|..+....-.+-. .+..+..|++||+.+|++.+.+..+=.+....-+-++..+-+++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 89999999999877666543 456788999999999999999998888888899999999999999999
Q ss_pred CCCcHHHHHHHHHHHH
Q psy6102 390 LPNDQQILKEIAFVRK 405 (426)
Q Consensus 390 ~P~n~~a~~~l~~i~~ 405 (426)
+|++...|...-....
T Consensus 95 ~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQ 110 (321)
T ss_pred CCCChHHHHHHHHHHH
Confidence 9999888766544433
No 326
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.79 E-value=0.26 Score=32.68 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
++|..+|.+-+..++|++|+.+|++||++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777788888888888888888888775
No 327
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=2.9 Score=40.69 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=73.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----------------------
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ----------------------- 385 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~k----------------------- 385 (426)
-+.-+.-.+..+++.+|...+..++..+|.+.++...++.||...|+.+.|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 344556677899999999999999999999999999999999999999776655543
Q ss_pred -----------HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102 386 -----------ALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA 419 (426)
Q Consensus 386 -----------Al~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~ 419 (426)
.+..+|+|.++...++..+...++.+++--+++.
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2224688888888888888888888877655544
No 328
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.63 E-value=4 Score=41.33 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=73.1
Q ss_pred HHhccchhhh---hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH---------ccCHHHHH
Q psy6102 279 IKNSGNEYFK---LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK---------FKAYKRAI 346 (426)
Q Consensus 279 ~~~~G~~~f~---~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~---------lg~~~~Ai 346 (426)
....|..+-+ .|+.++|+..+..++... .+.+++.+.-.|.+|-. ....++|+
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~---------------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi 246 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESD---------------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAI 246 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---------------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 3344444555 889999999998876541 56677788888877743 23578899
Q ss_pred HHHHHHHHhCCCC---------------------------------------------HHHHHHHHHHHHHcCChHHHHH
Q psy6102 347 NLCDDILLMEPNN---------------------------------------------VKALFRRGRAQVSMNNFEQGLQ 381 (426)
Q Consensus 347 ~~~~~AL~ldp~~---------------------------------------------~kal~~lg~a~~~lg~~~~Al~ 381 (426)
.+|.++.+++|+. ...+-.++.+....|++++|++
T Consensus 247 ~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~ 326 (374)
T PF13281_consen 247 EWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQ 326 (374)
T ss_pred HHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999988653 1123344556666777788888
Q ss_pred HHHHHHHhCCCcHHHHHHHHH
Q psy6102 382 DYEQALDLLPNDQQILKEIAF 402 (426)
Q Consensus 382 ~l~kAl~l~P~n~~a~~~l~~ 402 (426)
.+++++++.|..-.....++.
T Consensus 327 a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 327 AAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred HHHHHhhcCCcchhHHHHHHH
Confidence 888877777665444333333
No 329
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=0.72 Score=44.32 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=69.1
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
.......=..+.+.++|+.|..+-.+.+.+ +|.++.-+.-+|.+|.++|.+.-|+++++..++.
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l----------------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDL----------------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhh----------------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 334445556778889999999999999998 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQ 370 (426)
Q Consensus 356 dp~~~kal~~lg~a~ 370 (426)
.|+.+.+-.-+++..
T Consensus 245 ~P~~~~a~~ir~~l~ 259 (269)
T COG2912 245 CPDDPIAEMIRAQLL 259 (269)
T ss_pred CCCchHHHHHHHHHH
Confidence 999998887776654
No 330
>KOG0529|consensus
Probab=91.13 E-value=2.8 Score=42.48 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102 291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YKRAINLCDDILLMEPNNVKALFRRGR 368 (426)
Q Consensus 291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~--~~~Ai~~~~~AL~ldp~~~kal~~lg~ 368 (426)
-+++-+.+-..||+. +|..-.+|+.|..++.+... +..=++.|+++|++||.|..+|-.|=.
T Consensus 90 ~ld~eL~~~~~~L~~----------------npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf 153 (421)
T KOG0529|consen 90 LLDEELKYVESALKV----------------NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF 153 (421)
T ss_pred hhHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH
Confidence 566677777888888 99999999999999998764 688899999999999999999877766
Q ss_pred HHHHcCC----hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 369 AQVSMNN----FEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 369 a~~~lg~----~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
+...... ..+-+++..+++.-++.|-.++.....+...+
T Consensus 154 V~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 154 VVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 6544433 57788899999999999999999888877743
No 331
>KOG1550|consensus
Probab=90.91 E-value=2.2 Score=45.61 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=80.5
Q ss_pred HHhccchhhhh----h-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHH
Q psy6102 279 IKNSGNEYFKL----N-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCD 350 (426)
Q Consensus 279 ~~~~G~~~f~~----g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~ 350 (426)
.+.+|..|.+. . ++..|+.+|.+|.+. .++.+.+.+|.|+..-. ++..|.++|.
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------------------CCchHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 45566666663 2 889999999999876 55778889999998655 6789999998
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 351 DILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 351 ~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
.|.+. .+..|.+++|.||.. .-+...|..+|.+|.+.. ++.+...+..+..
T Consensus 353 ~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 353 LAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 88754 589999999999865 367889999999999987 4555555554444
No 332
>KOG3364|consensus
Probab=90.74 E-value=0.68 Score=39.81 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102 323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR 368 (426)
Q Consensus 323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~ 368 (426)
...-.+.+.+|..++++++|+.|+.+++..|+.+|+|..|.--.-.
T Consensus 68 ~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 68 ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4556788899999999999999999999999999999887654433
No 333
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=90.70 E-value=1.2 Score=37.69 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=60.2
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH----HH
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI----LL 354 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A----L~ 354 (426)
+..+|+.+++.+++-.||-+|++|+.+......... .+..++-...+-.+.|+|.-+..+|+.+-.+++++-| +.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~-~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNE-IELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999766532211 2222223455668899999999999999999998655 56
Q ss_pred hCCCC
Q psy6102 355 MEPNN 359 (426)
Q Consensus 355 ldp~~ 359 (426)
|-|..
T Consensus 83 LiPQC 87 (140)
T PF10952_consen 83 LIPQC 87 (140)
T ss_pred hccCC
Confidence 66654
No 334
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.58 E-value=0.63 Score=35.83 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=31.4
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhc
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN 310 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~ 310 (426)
..+..+...+..+=+.|++.+|+.+|++||+++-...
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4677788889999999999999999999999865443
No 335
>KOG2047|consensus
Probab=90.49 E-value=5.6 Score=42.63 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=23.1
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRY 305 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~ 305 (426)
-..|...|..|...|+.+.|...|.+|+..
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 355777888888888888888888888764
No 336
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.24 E-value=6.7 Score=35.36 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=71.7
Q ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHH
Q psy6102 323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN---NVKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PNDQQIL 397 (426)
Q Consensus 323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~---~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~--P~n~~a~ 397 (426)
..--.++..+|.-|.+.|++++|++.|.++.+.... -.+.++++-.+....+++.....++.+|-.+- +.+.+..
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 344568899999999999999999999998876532 36788899999999999999999999997763 2333333
Q ss_pred HH----HHHHHHHHhhHHHHHHHHHHh
Q psy6102 398 KE----IAFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 398 ~~----l~~i~~~l~~~~~a~k~~~~k 420 (426)
.. .+......+++.++.+....-
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 22 223333456667766655443
No 337
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=2.7 Score=44.45 Aligned_cols=97 Identities=16% Similarity=0.045 Sum_probs=76.6
Q ss_pred CcchHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCcHHHHH
Q psy6102 322 RSYYTAALLN--MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQILK 398 (426)
Q Consensus 322 ~p~~~~~~~n--lA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~k-Al~l~P~n~~a~~ 398 (426)
++.+..++.. ++..+..++....+.-....++..+|.+..++.++|.++...|....++..+.. |....|+|.++..
T Consensus 61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 5555555333 588888899999999999999999999999999999999888877777776555 9999999998887
Q ss_pred HH------HHHHHHHhhHHHHHHHHH
Q psy6102 399 EI------AFVRKQMRHHLNLEKMTY 418 (426)
Q Consensus 399 ~l------~~i~~~l~~~~~a~k~~~ 418 (426)
.+ ++....+++..++.....
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~ 166 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALE 166 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77 666666666666654443
No 338
>KOG1550|consensus
Probab=89.83 E-value=2.9 Score=44.82 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=85.6
Q ss_pred HHHHHhccchhhh-----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-----CHHHH
Q psy6102 276 IRTIKNSGNEYFK-----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----AYKRA 345 (426)
Q Consensus 276 a~~~~~~G~~~f~-----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-----~~~~A 345 (426)
+.....+|.+++. .+|.+.|+.+|..|...+... + .-.++.+.+.+|.+|++-. ++..|
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~--------a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A 312 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA--------A---TKGLPPAQYGLGRLYLQGLGVEKIDYEKA 312 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH--------H---hhcCCccccHHHHHHhcCCCCccccHHHH
Confidence 4445555555554 479999999999998731100 0 1124558889999999843 78889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 346 INLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 346 i~~~~~AL~ldp~~~kal~~lg~a~~~lg---~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
+.++.++-.+. ++.+.+.+|.++..-. ++..|.++|..|... .+..+...++.|+..
T Consensus 313 ~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 313 LKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred HHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 99998888765 7788999999987765 678999999999765 677788888887764
No 339
>KOG2047|consensus
Probab=89.72 E-value=6 Score=42.44 Aligned_cols=151 Identities=10% Similarity=0.113 Sum_probs=106.2
Q ss_pred hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch---hhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102 272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS---KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348 (426)
Q Consensus 272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~---~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~ 348 (426)
+.+.+..|.+-|..-.+.++++.|+.+..+|... |....... .+...-.--....+|...+...-..|-++.....
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 3456788899999999999999999999998864 21111000 0000000123466888888888889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHH--HHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102 349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILK--EIAFVRKQMRHHLNLEKMTYARMFQ 423 (426)
Q Consensus 349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~--~l~~i~~~l~~~~~a~k~~~~k~f~ 423 (426)
|++.|+|--..+....+.|..+..-..+++|.+.|++.+.|.|- -.++|. .-..+.+--+..-+..|.+|.+-++
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888653 333332 2233333334445666777766544
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.71 E-value=0.56 Score=31.13 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
.+|..+|.+.+..++|++|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999874
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.58 E-value=1.2 Score=43.31 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=57.7
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl 387 (426)
...+..++.--|..|+..|.+.+|++.+++++.++|-+...+.-+-.+|..+||--.|+..|++.-
T Consensus 275 e~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 275 EQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344566777778899999999999999999999999999999999999999999888888887653
No 342
>KOG0529|consensus
Probab=89.54 E-value=6.5 Score=39.94 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=71.3
Q ss_pred CcchHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKF------------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN--FEQGLQDYEQAL 387 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~l------------g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~--~~~Al~~l~kAl 387 (426)
+|....+|.-+=.++... .-.++-+.....+|+.+|+..-+|+.|..++..... +..-++.+++++
T Consensus 59 npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L 138 (421)
T KOG0529|consen 59 NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKAL 138 (421)
T ss_pred CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 566666666555544332 246677788889999999999999999999998765 578889999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHhhH
Q psy6102 388 DLLPNDQQILKEIAFVRKQMRHH 410 (426)
Q Consensus 388 ~l~P~n~~a~~~l~~i~~~l~~~ 410 (426)
++||.|-.++.....+.......
T Consensus 139 ~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 139 KQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred hcCcccccchHHHHHHHHHHhcc
Confidence 99999999999988888776655
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.48 E-value=2.4 Score=43.07 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102 364 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 418 (426)
Q Consensus 364 ~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~ 418 (426)
-.+..||+.+++.+.|+..-.+.+-++|.+..-....+.|-+.+.++.+|.|.+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999987654
No 344
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.45 E-value=1.2 Score=42.54 Aligned_cols=62 Identities=8% Similarity=-0.021 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 345 Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
|+.+|.+|+.+.|++...|..+|.+....++.-.|+=+|-+++...--.+.+..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997655558888888888776
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.41 E-value=5.3 Score=35.03 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
+-+...+.+++...+...--+-|+.++.-.--|..+...|++++|+..|+...+-.|..+.+...+..|+..++
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444433
No 346
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.15 E-value=1.7 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHHhCCCC
Q psy6102 327 AALLNMAAVQLKFKAYKRAINL--CDDILLMEPNN 359 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~--~~~AL~ldp~~ 359 (426)
+.++.+|..+...|++++|+.. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4678889999999999999999 54888888764
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.85 E-value=5.6 Score=41.26 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=74.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365 (426)
Q Consensus 286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~ 365 (426)
....|+...|-.....+++. .|..+.....++.+...+|+|+.|.+++.-+=+.-..-.++.--
T Consensus 299 ~~~~gd~~aas~~~~~~lr~----------------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~ 362 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN----------------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRC 362 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh----------------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHH
Confidence 44567777888777778877 77888888888999999999999998887776665666666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH
Q psy6102 366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399 (426)
Q Consensus 366 lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~ 399 (426)
+-..+..++++++|+..-+-.|.-+-+++++..-
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~i 396 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTV 396 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccCChhheee
Confidence 6677788888888888777777666666655443
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.63 E-value=15 Score=37.07 Aligned_cols=136 Identities=12% Similarity=0.091 Sum_probs=85.6
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-c-----h-------hhhhhhcCcchHHHHHHHHHHHHHccC
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-Q-----S-------KTQQKHFRSYYTAALLNMAAVQLKFKA 341 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-~-----~-------~~~~~~~~p~~~~~~~nlA~~~~~lg~ 341 (426)
.+..+.+++.++..+|++..|-+..++||-.++..-.. . . ..-....+-....+++.....+.+.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 45677888888888888888888888888654311110 0 0 011111123334566677788889999
Q ss_pred HHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhH
Q psy6102 342 YKRAINLCDDILLMEPN-NVK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-----DQQILKEIAFVRKQMRHH 410 (426)
Q Consensus 342 ~~~Ai~~~~~AL~ldp~-~~k-al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-----n~~a~~~l~~i~~~l~~~ 410 (426)
+..|+++|+-.+.+||. ++- +++.+=....+.++|+--++.++........ -+........++..+++.
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 99999999999999998 654 4445555556668888777777765542111 123344444555555554
No 349
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.58 E-value=8.9 Score=36.94 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=76.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HH
Q psy6102 287 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNN-VK 361 (426)
Q Consensus 287 f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----lg~~~~Ai~~~~~AL~ldp~~-~k 361 (426)
....++.+|+..|..+. ....+.+.+++|.+|.. ..++.+|..+|.+|.+..-.. ..
T Consensus 88 gv~~~~~~A~~~~~~~a------------------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~ 149 (292)
T COG0790 88 GVSRDKTKAADWYRCAA------------------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL 149 (292)
T ss_pred CccccHHHHHHHHHHHh------------------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH
Confidence 33456888888888555 45667889999999987 559999999999999886544 46
Q ss_pred HHHHHHHHHHHcC-------ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102 362 ALFRRGRAQVSMN-------NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 362 al~~lg~a~~~lg-------~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~ 406 (426)
+.+++|.+|..-. +...|+..|.+|.... +..+...++.++..
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 6888998887642 3347999999998875 77778888877643
No 350
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.51 E-value=9.9 Score=38.53 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHHhCCCcHH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLM----EPNNVKALFRRGRAQVS---MNNFEQGLQDYEQ-ALDLLPNDQQ 395 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l----dp~~~kal~~lg~a~~~---lg~~~~Al~~l~k-Al~l~P~n~~ 395 (426)
..+.+..++=.+|....+|+.-++..+..-.+ -++....-+..|.|+-. .|+.++|+..+.. .....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 45567778888999999999999988777666 45677888899999988 9999999999999 4556678899
Q ss_pred HHHHHHHHHHHHhh
Q psy6102 396 ILKEIAFVRKQMRH 409 (426)
Q Consensus 396 a~~~l~~i~~~l~~ 409 (426)
+...++++++.+-.
T Consensus 219 ~~gL~GRIyKD~~~ 232 (374)
T PF13281_consen 219 TLGLLGRIYKDLFL 232 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998644
No 351
>KOG1839|consensus
Probab=87.39 E-value=2.9 Score=47.92 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=102.7
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+....+.|......+.|.+|.+ ..+++.++...+ ..+.|.....|..+|..+.+++++++|+..+.+|.-
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~--------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM--------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh--------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 56777888888888999999988 777777653222 234788999999999999999999999999988875
Q ss_pred hC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 355 ME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--------LPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 355 ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--------~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
+. |+....|-+++...+..+....|+..+.+++.+ .|.-..+..+++.++..+++.+.+.
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence 53 566788999999889999999999999999885 3555556666777766666655544
No 352
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.27 E-value=0.89 Score=46.42 Aligned_cols=59 Identities=14% Similarity=0.340 Sum_probs=46.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDILLM---------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~l---------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
+..+..++.-+|+|..|++.++- +++ -+.+...+|..|.||+++++|.+|++.|...|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677789999999997643 222 256788899999999999999999999988865
No 353
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.08 E-value=2.3 Score=40.55 Aligned_cols=62 Identities=16% Similarity=0.004 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy6102 295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS 372 (426)
Q Consensus 295 Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~ 372 (426)
|+.+|.+|+.+ .|.+...|+.+|.++...++.-.|+-+|-+++....-.+.|.-++...+..
T Consensus 1 A~~~Y~~A~~l----------------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL----------------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-----------------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh----------------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999 899999999999999999999999999999997776678888888888877
No 354
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.02 E-value=2.6 Score=36.65 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410 (426)
Q Consensus 361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~ 410 (426)
+....++...+..|++.-|.+....++..+|+|.+++..+..++..++..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555555555555555555555555555554443
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.79 E-value=0.97 Score=27.00 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q psy6102 362 ALFRRGRAQVSMNNFEQGLQDYE 384 (426)
Q Consensus 362 al~~lg~a~~~lg~~~~Al~~l~ 384 (426)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665543
No 356
>KOG2422|consensus
Probab=85.63 E-value=13 Score=39.37 Aligned_cols=123 Identities=23% Similarity=0.182 Sum_probs=91.7
Q ss_pred Hhccchhhh---hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Q psy6102 280 KNSGNEYFK---LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL-- 354 (426)
Q Consensus 280 ~~~G~~~f~---~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~-- 354 (426)
.+.|..+|+ ...|++|...|.-|+..++..... ....-.|..+..+..+|.+....|+.+-|.....++|=
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~----~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~ 314 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVL----ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVF 314 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCccee----eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 456666665 567999999999888875432221 11222599999999999999999999988887777762
Q ss_pred ---hC----------------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Q psy6102 355 ---ME----------------PNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEIAFVRKQ 406 (426)
Q Consensus 355 ---ld----------------p~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-n~~a~~~l~~i~~~ 406 (426)
+. |.| ..++|+.=+.+...|.+.-|.+.++..++++|. |+.+...+-.++..
T Consensus 315 d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL 389 (665)
T KOG2422|consen 315 DRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL 389 (665)
T ss_pred HHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence 11 222 567888888889999999999999999999998 88766655555543
No 357
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.62 E-value=13 Score=37.74 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=75.4
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
..+...-...+..|+|+.|+++.+......-- +.-..+-....++.-.|...+ .-+...|..+..++++|.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--------e~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~ 259 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVI--------EKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA 259 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--------chhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC
Confidence 34444445567788999999988776654100 000001122334444444333 346888999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~ 394 (426)
|+..-+-..-+.+|+..|+..++-..++.+-+.+|+-.
T Consensus 260 pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 260 PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 99999999999999999999999999999999888644
No 358
>KOG0686|consensus
Probab=85.02 E-value=3.4 Score=41.89 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=84.1
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
..+..+|..|...|+++.|++.|.++=+++.. ....+..|.|.-.+-..+++|..-..+-.+|...-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 46778999999999999999999997777533 23457789999999999999999998888887651
Q ss_pred --------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------hCCCcHHHHHHH
Q psy6102 357 --------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD--------LLPNDQQILKEI 400 (426)
Q Consensus 357 --------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~--------l~P~n~~a~~~l 400 (426)
.-.+++.-.-|.+.+.+++|..|..+|-.+-. +.|.|..+.-.+
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL 277 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL 277 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh
Confidence 12345666778888888999999998876633 235555554444
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.92 E-value=3.5 Score=28.29 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 364 FRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 364 ~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
+.+|.+|..+|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5667777777777777777777773
No 360
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.77 E-value=5.1 Score=33.89 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
+..+--++..+...|+|++++..-.+||.+...-.+-.+ +-....+.+.+++|.++..+|+.++|+..++.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q-----deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ-----DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS-----THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc-----ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344556777888899999999999999998654332111 002345678899999999999999999999998754
No 361
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.64 E-value=3.9 Score=41.86 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=77.0
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~ 358 (426)
+..+...+.-.|||..|++... ....... .-.....+-.+..++..|.||+-+++|.+|++.+..+|-.-..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~-------~idl~~~-~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLE-------NIDLNKK-GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhh-------ccCcccc-hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788777765542 2221111 1122335677889999999999999999999999988743221
Q ss_pred CHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHH-HHhhHHHHHHHHHHhhhc
Q psy6102 359 NVKALFRRGRAQ-VSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRK-QMRHHLNLEKMTYARMFQ 423 (426)
Q Consensus 359 ~~kal~~lg~a~-~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~-~l~~~~~a~k~~~~k~f~ 423 (426)
.-..+..+..-+ ......++....+--++.+.|. +..+...+..-+. .+.+-++..-.+|..+|.
T Consensus 197 ~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~ 265 (404)
T PF10255_consen 197 TKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFS 265 (404)
T ss_pred hhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 111111121111 1235556677777778888885 5555555444433 222222223445555553
No 362
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.28 E-value=2.4 Score=31.71 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.3
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhh
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY 309 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~ 309 (426)
..+..+...|..+=+.|+|++|+.+|.+|++.+-..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 355667778888888999999999999999986443
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.26 E-value=12 Score=35.66 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHH
Q psy6102 291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP------NNVKALF 364 (426)
Q Consensus 291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp------~~~kal~ 364 (426)
.-...|.++++|++....... .-....+...+|.-|++.|+|++|+..++.++..-- -....+.
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~----------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~ 222 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQ----------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLW 222 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 344566777777776544332 334455777899999999999999999999965532 2266778
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q psy6102 365 RRGRAQVSMNNFEQGLQDYE 384 (426)
Q Consensus 365 ~lg~a~~~lg~~~~Al~~l~ 384 (426)
.+..|+..+|+.+..+...-
T Consensus 223 ~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 223 RLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 88889999999888776543
No 364
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=84.02 E-value=2.6 Score=32.61 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW 308 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~ 308 (426)
.+..+...|..+=+.|+|++|+.+|.+||+.+..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4566777888888999999999999999998544
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.96 E-value=17 Score=39.36 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=86.8
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhc-ccch---------hhhhhhcCcchHHHHHHHHHHHHHccCHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN-QSQS---------KTQQKHFRSYYTAALLNMAAVQLKFKAYKR 344 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~-~~~~---------~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~ 344 (426)
.+..|.--|......+..+.|.+++.+|++.+.... .... .+...-+.-....+...++.+.+-++++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 455566677888888888899999999999987765 1100 011111122344567778889999999999
Q ss_pred HHHHHHHHHHhC---C------CCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHhCCCcH
Q psy6102 345 AINLCDDILLME---P------NNVKALFRRGRAQVSMNNFEQGLQDYE--------QALDLLPNDQ 394 (426)
Q Consensus 345 Ai~~~~~AL~ld---p------~~~kal~~lg~a~~~lg~~~~Al~~l~--------kAl~l~P~n~ 394 (426)
|......+.... | -.+..+|-.|..+...|+.+.|+..|. .+....+.+.
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 999988877653 2 247789999999999999999999998 5555555544
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.77 E-value=30 Score=31.92 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHH
Q psy6102 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----DQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~----n~~a~~~l~~i~~~l~~~~~a 413 (426)
+.++..+.+|.-|. ..+.++|+..|.++|++.+. |+++...|..+...+++++.+
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56788888877555 78889999999999998654 478888899888888877765
No 367
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.40 E-value=6.4 Score=40.55 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=50.6
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 350 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~ 350 (426)
.......|.-+|.+|+|.+++.+-.-..++ .| .+.+|.-+|.|++..++|.+|..++.
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~i----------------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKI----------------AP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh----------------CC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555677888899999999998887777777 78 89999999999999999999999874
No 368
>KOG0530|consensus
Probab=83.22 E-value=9.2 Score=36.79 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC-----hHHHHHHHHHHHHhCCCcHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS-MNN-----FEQGLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~-lg~-----~~~Al~~l~kAl~l~P~n~~ 395 (426)
+..+-.+|..|-.|....+.|+.-+.++.+.|+.|--|-.||..|=.+... .|- .+.-+.+..+.+.+.|+|..
T Consensus 143 DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 143 DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES 222 (318)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 344444555555555555555555555555555555554454444333222 111 22334455555566677777
Q ss_pred HHHHHHHHHHH
Q psy6102 396 ILKEIAFVRKQ 406 (426)
Q Consensus 396 a~~~l~~i~~~ 406 (426)
++..|.-++..
T Consensus 223 aWnYL~G~l~~ 233 (318)
T KOG0530|consen 223 AWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHh
Confidence 77777766654
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.98 E-value=12 Score=35.05 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397 (426)
Q Consensus 333 A~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~ 397 (426)
...+++-+...+||.....-++-+|.+.....-+=+.|.-.|++++|+.-++.+-++.|++..-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a 72 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA 72 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence 34567888999999999999999999999888888999999999999999999999999875433
No 370
>KOG1497|consensus
Probab=82.82 E-value=21 Score=35.24 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCc
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN--------NVKALFRRGRAQVSMNNFEQGLQDYEQALD--LLPND 393 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~--------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~--l~P~n 393 (426)
.-..+...+|..|-+-++|..|...+ .++.++.. ....+.++|.+|...++..+|..+..++-- -+-.|
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 34668899999999999999998876 33444321 134578899999999999999999988843 35588
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102 394 QQILKEIAFVRKQMRHHLNLEKMTYAR 420 (426)
Q Consensus 394 ~~a~~~l~~i~~~l~~~~~a~k~~~~k 420 (426)
++.+..++.|+.+.-+++.+--++-++
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqr 206 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQR 206 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877666554333333
No 371
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=82.44 E-value=7.7 Score=39.92 Aligned_cols=121 Identities=11% Similarity=0.166 Sum_probs=69.1
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch--hhhhhhcCcchHHHHHHHHH-HHH---Hcc----CHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAA-VQL---KFK----AYK 343 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~--~~~~~~~~p~~~~~~~nlA~-~~~---~lg----~~~ 343 (426)
.......+.|..++..|++.+|+..|...|..++-...... ..+..++ ..+...... +.+ +.. ..+
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~el----i~icrEYilgl~iEl~Rr~l~~~~~~ 277 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKEL----IEICREYILGLSIELERRELPKDPVE 277 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHH----HHHHHHHHHHHHHHHHHCTS-TTTHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccccchh
Confidence 34445677899999999999999999999987653322111 1122222 222221111 111 111 122
Q ss_pred HHHHHHHHH-----HHhCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102 344 RAINLCDDI-----LLMEPNNVKALFRRGRAQ-VSMNNFEQGLQDYEQALDLLPNDQQILK 398 (426)
Q Consensus 344 ~Ai~~~~~A-----L~ldp~~~kal~~lg~a~-~~lg~~~~Al~~l~kAl~l~P~n~~a~~ 398 (426)
+..+.++.| ++|.|.|.-.-++.|+.. ++.++|.-|..+-++.|++.|..+.+..
T Consensus 278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 222222222 356677777777777764 7789999999999999999998875544
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.49 E-value=33 Score=38.31 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.+......+.......+|.+|-.+..++...++..+.... ....+..---+|.+....+++++|+..++.++.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~-------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ-------GDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch-------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555666777778888988888888776544322111 233455667788999999999999999999998
Q ss_pred hCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 355 MEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 355 ldp~~-----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
.=|.+ .-++...|.+..-.|++++|+...+.+.++
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 87755 567889999999999999999999999887
No 373
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=81.02 E-value=28 Score=35.44 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=73.0
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHH--HHHHccCHHHHHHHHHHHHHh
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA--VQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~--~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...-.+....-.|+|+.|.+.|+--+.- |. ...+-.+|. ...++|..+.|+.+..++-..
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~d-----------------PE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~ 183 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDD-----------------PE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEK 183 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcC-----------------hH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence 3445556666778999999999877652 32 233333443 335799999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
-|.-..++...=......|+++.|++.++....-
T Consensus 184 Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 184 APQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999999988888899999999999998876653
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.37 E-value=2.2 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCD 350 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~ 350 (426)
.+.+++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998775
No 375
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.33 E-value=40 Score=29.62 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=51.5
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 378 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~ 378 (426)
.|....+-.--|..++..|+|.+|+..++....-.+..+-+---++.|+..+||.+-
T Consensus 40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 899999999999999999999999999999998888888777788999999999754
No 376
>PRK00969 hypothetical protein; Provisional
Probab=80.21 E-value=3.5 Score=42.84 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChHHHHHHHHhh
Q psy6102 25 GRMVIELFKHIVPKTAENFRALC 47 (426)
Q Consensus 25 G~i~~~l~~~~~P~~~~nf~~l~ 47 (426)
--|.|+||++.||+||.=|+++.
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~t 400 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVT 400 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhc
Confidence 36899999999999999999987
No 377
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.81 E-value=5.7 Score=34.54 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 378 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~ 378 (426)
.+....+|...+..|+|..|++.++.++..+|+|.++...++.+|..++.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34556777888899999999999999999999999999999999988876544
No 378
>KOG2581|consensus
Probab=79.31 E-value=21 Score=36.45 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILL----MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~----ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~ 394 (426)
..+.+.+.+=.+|+..+.|+.|-....++.- -+...+..+|.+|.+..-+.+|..|.+++-+|+...|++.
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3345566667788899999999887766651 1223467789999999999999999999999999999854
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.54 E-value=29 Score=37.66 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=82.2
Q ss_pred hHHHHHHhccchhh-hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYF-KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 274 k~a~~~~~~G~~~f-~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
..+...+.+|..++ ...+++.|..+.++++.+.... .+......+.+-++.++.+.+... |+..++++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~----------~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~ 125 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH----------RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKA 125 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc----------chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence 36778889999988 6789999999999999985431 112223445566688888888777 99999999
Q ss_pred HHhCCC----CHHHHHHHHHH-HH-HcCChHHHHHHHHHHHHhC--CCcHHHHHHH
Q psy6102 353 LLMEPN----NVKALFRRGRA-QV-SMNNFEQGLQDYEQALDLL--PNDQQILKEI 400 (426)
Q Consensus 353 L~ldp~----~~kal~~lg~a-~~-~lg~~~~Al~~l~kAl~l~--P~n~~a~~~l 400 (426)
++.-.. ...-.|++-.+ +. ..+++..|++.++....+. +.++.+....
T Consensus 126 I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 126 IEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 977654 34444444433 22 2379999999999998876 4666554443
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.42 E-value=24 Score=27.46 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCChHHHHHHHH
Q psy6102 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG---RAQVSMNNFEQGLQDYE 384 (426)
Q Consensus 328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg---~a~~~lg~~~~Al~~l~ 384 (426)
-....|.-++...+..+|+....++|...++....+..+| .+|...|+|.+++++--
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666777777777777766666555444443 34566666666666543
No 381
>KOG1839|consensus
Probab=77.82 E-value=11 Score=43.49 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=87.1
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+..+..++..+.+.+++++|+..-.+|.-+...... .-.|.....|.+++...+..+....|+..+.+++
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g--------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG--------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc--------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 35677888999999999999999988887755222111 1146778899999999999999999999999998
Q ss_pred HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 354 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 354 ~ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
.+. |.-+-...+++.++..+++++.|+.+++.|+.+.
T Consensus 1043 ~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1043 KLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 763 4445556788888999999999999999999853
No 382
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.69 E-value=8.4 Score=36.64 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=53.1
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
......++|..|+..|+|++|+.+|+.+........ . ......++..+..|+.++|+.+..+..+-+.+
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------W---~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------W---WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-------c---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345567999999999999999999999965422110 1 23446688889999999999999998876654
No 383
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=77.58 E-value=17 Score=41.43 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA-------LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka-------l~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~ 394 (426)
.|.-+.=|...|.+|.++++|++-++++..|++.-|.++.. .|++-.+++.. ...|+.+.--|+...|...
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKI 625 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccc
Confidence 46667779999999999999999999999999999999764 45555554443 3478888888999999875
Q ss_pred HHHH
Q psy6102 395 QILK 398 (426)
Q Consensus 395 ~a~~ 398 (426)
....
T Consensus 626 ~~~~ 629 (932)
T PRK13184 626 SSRE 629 (932)
T ss_pred cchH
Confidence 4443
No 384
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=77.57 E-value=2.8 Score=41.14 Aligned_cols=75 Identities=5% Similarity=-0.009 Sum_probs=61.2
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHH-HHHHHHHccCHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN-MAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~n-lA~~~~~lg~~~~Ai~~~~~AL 353 (426)
....|...++-..+.+.|.+--..|.+|+.. .|.++++|.. -+.-+...++.+.|...+.++|
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k----------------hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTK----------------HPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 4455666666666777888888888888888 9999999987 4556678899999999999999
Q ss_pred HhCCCCHHHHHH
Q psy6102 354 LMEPNNVKALFR 365 (426)
Q Consensus 354 ~ldp~~~kal~~ 365 (426)
+++|+++..|+.
T Consensus 170 R~N~~~p~iw~e 181 (435)
T COG5191 170 RMNSRSPRIWIE 181 (435)
T ss_pred ccCCCCchHHHH
Confidence 999999887643
No 385
>KOG2561|consensus
Probab=77.33 E-value=20 Score=36.89 Aligned_cols=111 Identities=9% Similarity=0.042 Sum_probs=71.4
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCH----------
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY---------- 342 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~---------- 342 (426)
+-.+.-+++.|..+...+.|.+|+.++-.|=+.+.... .+..+.-.+++.+-..+-+||+++++.
T Consensus 160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd-----~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCD-----SKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh-----HHHHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 33567789999999999999999988877766532221 122233455566666778899888753
Q ss_pred HHHHHHHHHHH--------HhC-CCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 343 KRAINLCDDIL--------LME-PNNV------KALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 343 ~~Ai~~~~~AL--------~ld-p~~~------kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
..|.+.+.++- .+. ++.+ ..+.--|.+.+++|+-++|.++++.|..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22222222221 111 2222 2344558899999999999999999865
No 386
>KOG2300|consensus
Probab=77.23 E-value=18 Score=37.75 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=78.3
Q ss_pred HHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFK-LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDI 352 (426)
Q Consensus 275 ~a~~~~~~G~~~f~-~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~A 352 (426)
.+.....+|..++. ..+.+.|..+.++|..+....... ......++..+|.+|.... .+..|...+.+|
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f---------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF---------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH---------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34455666665554 678999999999999986544321 2334567888999999888 888889999999
Q ss_pred HHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHH
Q psy6102 353 LLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYE 384 (426)
Q Consensus 353 L~ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~ 384 (426)
+++.... -+.++.+++.+....|+..|++.+.
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 9998765 4678999999999999999988753
No 387
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.11 E-value=11 Score=34.84 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN----NVKALFRRGRAQVSMNNFEQGL 380 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~----~~kal~~lg~a~~~lg~~~~Al 380 (426)
..+.+.+.+|..|. ..+..+|+..+.++|.+.+. +++.+..++.++..+++++.|.
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56788888886665 78999999999999998643 5999999999999999999885
No 388
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.10 E-value=62 Score=31.99 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR 368 (426)
Q Consensus 289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~ 368 (426)
..-.+..+..|++||+. +|.+..++..+=.+..+.-+.++..+-.++++..+|.+...|...-.
T Consensus 44 ~a~~E~klsilerAL~~----------------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 44 RALAERKLSILERALKH----------------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 33456677789999988 89999999888888889999999999999999999999988866544
Q ss_pred HHHH---cCChHHHHHHHHHHHHh
Q psy6102 369 AQVS---MNNFEQGLQDYEQALDL 389 (426)
Q Consensus 369 a~~~---lg~~~~Al~~l~kAl~l 389 (426)
.... .-.++..+..|.++++.
T Consensus 108 ~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 108 FRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHH
Confidence 3322 23567788888888764
No 389
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=76.76 E-value=7.6 Score=29.66 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.7
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW 308 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~ 308 (426)
..+..+...|...=..|+|++|+.+|.+|++.+-.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45677788888888999999999999999998543
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.74 E-value=4.5 Score=27.73 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 330 LNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
+++|.+|+.+|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999999995
No 391
>KOG1258|consensus
Probab=75.97 E-value=59 Score=34.74 Aligned_cols=122 Identities=8% Similarity=-0.005 Sum_probs=92.2
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 355 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l 355 (426)
...|......-...|+++.....|.+|+-- -..+..+|.+.+.-....|+.+-|-..+.++.++
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~----------------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP----------------CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH----------------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 345666677777889999999999999987 4566778888887777778888888777777776
Q ss_pred C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 356 E-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 356 d-p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
- |+.+-.+..-+..-...|+++.|...|++..+-.|+..++-.....+..+.++.+.+
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence 4 555666666666667778888888888888887788877776666666666655544
No 392
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.56 E-value=12 Score=36.45 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
...+++..++.++...++++.+++.+++.+.++|-+..++..+-..+...++...+.+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~ 208 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIR 208 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHH
Confidence 4678899999999999999999999999999999999999999999999888776654
No 393
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.46 E-value=9.2 Score=29.06 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.5
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhh
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY 309 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~ 309 (426)
..+..+...|...=..|+|++|+.+|.+|++.+-..
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345566677777778899999999999999986443
No 394
>KOG2114|consensus
Probab=75.39 E-value=21 Score=39.56 Aligned_cols=32 Identities=9% Similarity=0.357 Sum_probs=27.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI 306 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~ 306 (426)
.+......|+-+|++|++++|...|-++|..+
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 45667889999999999999999999999754
No 395
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.17 E-value=12 Score=28.83 Aligned_cols=27 Identities=15% Similarity=-0.103 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
+..+..+|.-+-+.|++.+|+.+|+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555555666666555555443
No 396
>KOG2396|consensus
Probab=74.66 E-value=12 Score=39.19 Aligned_cols=72 Identities=10% Similarity=-0.002 Sum_probs=57.4
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-YKRAINLCDDILLM 355 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~-~~~Ai~~~~~AL~l 355 (426)
..|.....-.-+.+.|.+--..|.+++.. .|.++.+|..-|.-.+..+. .+.|...+.++|+.
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~----------------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAK----------------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHh----------------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 33444444444455588888889999988 99999999998888887776 89999999999999
Q ss_pred CCCCHHHHH
Q psy6102 356 EPNNVKALF 364 (426)
Q Consensus 356 dp~~~kal~ 364 (426)
+|++++.|.
T Consensus 170 npdsp~Lw~ 178 (568)
T KOG2396|consen 170 NPDSPKLWK 178 (568)
T ss_pred CCCChHHHH
Confidence 999988653
No 397
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=74.31 E-value=4.6 Score=38.07 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=64.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C-CC
Q psy6102 284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM----E-PN 358 (426)
Q Consensus 284 ~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l----d-p~ 358 (426)
..+|..|+|+.|++...-||+.-...+..... ......++-...-|......|..-+.- .......+ + |+
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R----~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~l~~~~dmpd 165 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRR----TLANFVAEEVANAALKAASAGESVEPY-FLRVFLDLTTEWDMPD 165 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccC----CchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhcCCCCh
Confidence 35678899999999999999863222211000 000111222333334444444421110 11112222 1 34
Q ss_pred C--HHHHHHHHHHHH---------HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 359 N--VKALFRRGRAQV---------SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 359 ~--~kal~~lg~a~~---------~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
. ++.|--.|.+++ ..++...|+..|++|+.++|+ .-+...++.+.+.++
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr 225 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence 4 444555566663 456888999999999999975 345555666666554
No 398
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=74.19 E-value=10 Score=28.82 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=28.3
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW 308 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~ 308 (426)
..+..+...|..+=..|+|++|+.+|.+|++.+-.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34556677777888899999999999999998644
No 399
>KOG0546|consensus
Probab=73.75 E-value=1.8 Score=43.03 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=64.8
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
...+.+...++.+.|..|+..-..+++. ++....+++.++..++.+.++++|++++..+....|
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~----------------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRD----------------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred cccchHHhcccccCCCcceecccccccc----------------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 3445677777888888888777777775 888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q psy6102 358 NNVKALFRRGRAQVSM 373 (426)
Q Consensus 358 ~~~kal~~lg~a~~~l 373 (426)
++....-.+..+-...
T Consensus 341 ~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 341 NDKAIEEELENVRQKK 356 (372)
T ss_pred chHHHHHHHHHhhhHH
Confidence 9987665555444333
No 400
>KOG4014|consensus
Probab=73.32 E-value=75 Score=29.14 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=73.0
Q ss_pred HHHHHhccchhhh-----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc-----c--CHH
Q psy6102 276 IRTIKNSGNEYFK-----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-----K--AYK 343 (426)
Q Consensus 276 a~~~~~~G~~~f~-----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l-----g--~~~ 343 (426)
+...+..|+-++. .++...|++.|..|.+. ..+.++.++++++..- + +..
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~------------------n~~~aC~~~gLl~~~g~~~r~~dpd~~ 129 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA------------------NIPQACRYLGLLHWNGEKDRKADPDSE 129 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc------------------CCHHHHhhhhhhhccCcCCccCCCCcH
Confidence 3445555554443 56889999999988754 5567778888777532 2 377
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------------cCChHHHHHHHHHHHHhCCCcHHHHHH
Q psy6102 344 RAINLCDDILLMEPNNVKALFRRGRAQVS------------------------MNNFEQGLQDYEQALDLLPNDQQILKE 399 (426)
Q Consensus 344 ~Ai~~~~~AL~ldp~~~kal~~lg~a~~~------------------------lg~~~~Al~~l~kAl~l~P~n~~a~~~ 399 (426)
+|.+++.++.+++ +..+-|.+...|+. +.+.+.|+++--+|.++ +++.+-.+
T Consensus 130 Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN 205 (248)
T KOG4014|consen 130 KAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACAN 205 (248)
T ss_pred HHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhh
Confidence 8899999988775 44555555444443 36678888888888877 45666666
Q ss_pred HHHHHHH
Q psy6102 400 IAFVRKQ 406 (426)
Q Consensus 400 l~~i~~~ 406 (426)
+.+++..
T Consensus 206 ~SrMykl 212 (248)
T KOG4014|consen 206 VSRMYKL 212 (248)
T ss_pred HHHHHHc
Confidence 6666553
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.75 E-value=20 Score=32.42 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 342 ~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
....++..++.++..| ++..+.+++.++..+|+.++|....+++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455666777777778 88899999999999999999999999999999943
No 402
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=72.32 E-value=7.9 Score=40.25 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHhh
Q psy6102 25 GRMVIELFKHIVPKTAENFRALC 47 (426)
Q Consensus 25 G~i~~~l~~~~~P~~~~nf~~l~ 47 (426)
.-|.|+||++.||+||.=|+++.
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~t 397 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFT 397 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhc
Confidence 46899999999999999999976
No 403
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.82 E-value=26 Score=34.93 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLM--EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l--dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
+.+-.|+|.+.-+..-...++...+-.+.- =..+.-.+-.+|..+..+|+.++|...|++|+.+.++..+....+..+
T Consensus 329 PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 329 PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 445678888887777788888776555433 234566777889999999999999999999999999888766655544
No 404
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.26 E-value=12 Score=22.42 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102 375 NFEQGLQDYEQALDLLPNDQQILKEIAF 402 (426)
Q Consensus 375 ~~~~Al~~l~kAl~l~P~n~~a~~~l~~ 402 (426)
+.+.|...|++++...|.+..++.....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4556666666666666666655555443
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.90 E-value=54 Score=33.38 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=46.0
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHH--HccCHHHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL--KFKAYKRAINLCDDIL 353 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~--~lg~~~~Ai~~~~~AL 353 (426)
.......+..+|..++|..|...+...++.++. ......+..++.+|. ..-++.+|.+.++..+
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~--------------~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPG--------------REEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc--------------hhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345667788899999999999999998874211 011456666666665 5778888888888666
Q ss_pred H
Q psy6102 354 L 354 (426)
Q Consensus 354 ~ 354 (426)
.
T Consensus 197 ~ 197 (379)
T PF09670_consen 197 K 197 (379)
T ss_pred H
Confidence 4
No 406
>KOG4014|consensus
Probab=68.59 E-value=68 Score=29.43 Aligned_cols=78 Identities=15% Similarity=0.020 Sum_probs=55.7
Q ss_pred CcchHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CC--hHHHHHHHHHHHHh
Q psy6102 322 RSYYTAALLNMAAVQLK-----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM-----NN--FEQGLQDYEQALDL 389 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~-----lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l-----g~--~~~Al~~l~kAl~l 389 (426)
+..++..++.+|..++. .+++..|++.+..+.. -+.+.+-.++|.++..- ++ .+.|.+++.+|..+
T Consensus 64 en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 64 ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 45567778888876653 3579999999998887 45788888888887653 33 67899999999877
Q ss_pred CCCcHHHHHHHHHH
Q psy6102 390 LPNDQQILKEIAFV 403 (426)
Q Consensus 390 ~P~n~~a~~~l~~i 403 (426)
+ +.++-..|..+
T Consensus 142 ~--~~~aCf~LS~m 153 (248)
T KOG4014|consen 142 E--DGEACFLLSTM 153 (248)
T ss_pred C--CchHHHHHHHH
Confidence 4 44444444433
No 407
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.10 E-value=57 Score=33.96 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=32.3
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
+++|+.+.|.+.+ ...++...|-++|.+.+.+|+++-|.++|+++-.
T Consensus 329 l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 4566666666543 2345777888888888888888888888887743
No 408
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.91 E-value=17 Score=27.81 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=28.5
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW 308 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~ 308 (426)
..+..+...|...=..|+|++|+.+|.+||+.+-.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34566777778888899999999999999998543
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.79 E-value=28 Score=29.51 Aligned_cols=79 Identities=9% Similarity=0.042 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Q psy6102 296 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL--MEPNNVKALFRRGRAQVSM 373 (426)
Q Consensus 296 i~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~--ldp~~~kal~~lg~a~~~l 373 (426)
...+.+|+....... ...-++....+|...|.... .+.+.|..... +--..+..|-.-|..+...
T Consensus 46 ~~lLer~~~~f~~~~-------~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~ 112 (126)
T PF08311_consen 46 LELLERCIRKFKDDE-------RYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKR 112 (126)
T ss_dssp HHHHHHHHHHHTTSG-------GGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhH-------hhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHc
Confidence 445666666543211 12226677777777665332 77777776664 4456788888888889999
Q ss_pred CChHHHHHHHHHHH
Q psy6102 374 NNFEQGLQDYEQAL 387 (426)
Q Consensus 374 g~~~~Al~~l~kAl 387 (426)
|++.+|.+.|++++
T Consensus 113 ~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 113 GNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998875
No 410
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.70 E-value=14 Score=36.02 Aligned_cols=54 Identities=20% Similarity=0.163 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a 413 (426)
.+.+.-.+..|...|.+.+|++..++++.++|-+.+.+..+..++..+|+.-.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhh
Confidence 456667788899999999999999999999999999999999999999885443
No 411
>KOG3807|consensus
Probab=67.62 E-value=85 Score=31.40 Aligned_cols=50 Identities=6% Similarity=0.067 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHhhHHHH
Q psy6102 364 FRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 364 ~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n--~~a~~~l~~i~~~l~~~~~a 413 (426)
.++|+|-.++|+..+|++.++...+-.|-. -.+..++-.....+..+.+-
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888777666622 23344444444444444433
No 412
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.49 E-value=7.2 Score=30.11 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=28.9
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK 307 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~ 307 (426)
..+..+...+..+=+.|+|++|+.+|.+||+++-
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999853
No 413
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=67.24 E-value=92 Score=31.33 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccchhh--hhhhcCcchHHHHHHHHHHHHHccCHHHH-----------------HHHHH
Q psy6102 290 NRMHDAQRKYKKAVRYIKWYNQSQSKT--QQKHFRSYYTAALLNMAAVQLKFKAYKRA-----------------INLCD 350 (426)
Q Consensus 290 g~y~~Ai~~y~kAl~~~~~~~~~~~~~--~~~~~~p~~~~~~~nlA~~~~~lg~~~~A-----------------i~~~~ 350 (426)
.....|..+|++|.-.+.......... ...++.+....++..+..+..+.--|.+| ...|+
T Consensus 129 ~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~k~sliAKLa~qv~~~Y~ 208 (355)
T cd09241 129 EGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQECFWQKAISDGTKDSLIAKLAAQVSDYYQ 208 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 457888999999888766555443222 45566777777777776655443323333 33455
Q ss_pred HHHHhC---C----C------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 351 DILLME---P----N------------NVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 351 ~AL~ld---p----~------------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
+|++.- + . .+-++|+.|......+++.+++..++.|+..
T Consensus 209 ~a~~~l~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~ 266 (355)
T cd09241 209 EALKYANKSDLIRSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAA 266 (355)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 554321 1 1 1446788888888888899999988888773
No 414
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=67.19 E-value=1.4e+02 Score=30.07 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=67.5
Q ss_pred hHHHHHHhccchhhhhh---------hHHHHHHHHHHHHHHHHhhcccchhhhhh-hcCcchHHHHHHHHHHHHHccCHH
Q psy6102 274 DVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWYNQSQSKTQQK-HFRSYYTAALLNMAAVQLKFKAYK 343 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g---------~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~-~~~p~~~~~~~nlA~~~~~lg~~~ 343 (426)
+.+..++++|-.+.+.+ ....|..+|++|--.+............. .+++....++..+..+..+---+.
T Consensus 112 Eka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~~lmLAQAQEc~~~ 191 (361)
T cd09239 112 EEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNYSLMLAQAQECLLE 191 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555433 37778888888877665544432211222 566666677666655544432233
Q ss_pred H-----------------HHHHHHHHHHh------C-----C----CC------------HHHHHHHHHHHHHcCChHHH
Q psy6102 344 R-----------------AINLCDDILLM------E-----P----NN------------VKALFRRGRAQVSMNNFEQG 379 (426)
Q Consensus 344 ~-----------------Ai~~~~~AL~l------d-----p----~~------------~kal~~lg~a~~~lg~~~~A 379 (426)
+ +...|++|++. + + .. +.++|+.|..+...+++.++
T Consensus 192 Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~Ge~ 271 (361)
T cd09239 192 KSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKMGER 271 (361)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3 23455555543 1 1 00 33668888888888889999
Q ss_pred HHHHHHHHH
Q psy6102 380 LQDYEQALD 388 (426)
Q Consensus 380 l~~l~kAl~ 388 (426)
+..|+.|..
T Consensus 272 Ia~L~~A~~ 280 (361)
T cd09239 272 VAYYQLAND 280 (361)
T ss_pred HHHHHHHHH
Confidence 888888876
No 415
>KOG2041|consensus
Probab=67.01 E-value=19 Score=39.11 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=44.7
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhh------cccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY------NQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~------~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~ 348 (426)
.-.++.++|..+.....|++|.++|.++-..-... ......+....--|.+..++-.+|.++...|.-++|.+.
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHH
Confidence 45678889999999999999999998775531100 001112222222355555555666666666666666555
Q ss_pred H
Q psy6102 349 C 349 (426)
Q Consensus 349 ~ 349 (426)
+
T Consensus 875 ~ 875 (1189)
T KOG2041|consen 875 Y 875 (1189)
T ss_pred H
Confidence 4
No 416
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=66.00 E-value=12 Score=35.92 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=61.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHH
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----------FKAYKRAINLCDDILL 354 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----------lg~~~~Ai~~~~~AL~ 354 (426)
.++..++--.|+..|...+.- .|.+..++..-|.|..+ .-....|.+.++.||-
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~----------------~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm 67 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKG----------------SPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALM 67 (368)
T ss_pred chhcccchHHHhhhhhhhhcc----------------CCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHH
Confidence 344455555566666555544 45554444444444433 2356778888888886
Q ss_pred hCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102 355 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 355 ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n 393 (426)
+-..- .-+-++++..|+.+.+|+.|..+|.+|+.+.-++
T Consensus 68 ~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 68 TAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 64322 3367889999999999999999999999985444
No 417
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=65.92 E-value=40 Score=25.83 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=26.2
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW 308 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~ 308 (426)
.+..+...|...=..++|++|..+|.++|+.+..
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455666667777789999999999999998543
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.26 E-value=55 Score=31.40 Aligned_cols=99 Identities=4% Similarity=-0.019 Sum_probs=58.6
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH-HHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK-RAINLCDDI 352 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~-~Ai~~~~~A 352 (426)
++.+.++.-+..+++.+++..|.+.-.-.|+.+.... .+.+....-+++.+......-+ +-....++|
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~-----------~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~a 76 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE-----------DPVDEESIARLIELISLFPPEEPERKKFIKAA 76 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------------SHHHHHHHHHHHHHS-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 3556667777777777777777777666665543322 3334444456666665554322 233444555
Q ss_pred HHhC------CCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy6102 353 LLME------PNNVKALFRRGRAQVSMNNFEQGLQDY 383 (426)
Q Consensus 353 L~ld------p~~~kal~~lg~a~~~lg~~~~Al~~l 383 (426)
++.. -.+++.+..+|..|+..+++.+|..+|
T Consensus 77 i~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 77 IKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5443 246889999999999999999988776
No 419
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.92 E-value=10 Score=39.34 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102 332 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 332 lA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~ 394 (426)
+-.....++++++|+......|.-.-..++.+-.-|..-..+|-+++|+-.|++.+.++|...
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 334567899999999998888877777888887777788889999999999999999987543
No 420
>KOG3783|consensus
Probab=64.87 E-value=60 Score=34.31 Aligned_cols=69 Identities=9% Similarity=-0.047 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCcH
Q psy6102 326 TAALLNMAAVQLKFKAYKRAINLCDDILLME---P----NNVKALFRRGRAQVSMNN-FEQGLQDYEQALDLLPNDQ 394 (426)
Q Consensus 326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld---p----~~~kal~~lg~a~~~lg~-~~~Al~~l~kAl~l~P~n~ 394 (426)
.--+.-+|.++..+|+...|..++..+++-. . -.+-|+|.+|..++.++. ..+|.+.+.+|.....++.
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 3456778999999999999999999988432 1 127899999999999999 9999999999988875544
No 421
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.49 E-value=55 Score=28.39 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=66.1
Q ss_pred ccceechhhccccHHHHHhhchhh--CCccc----ccchhhhHHHHHHhccchh--hhhhhHHHHHHHHHHHHHHHHhhc
Q psy6102 239 KNGIFGCVRQGFGVAREVSYVEAE--NDKPL----VLNQMEDVIRTIKNSGNEY--FKLNRMHDAQRKYKKAVRYIKWYN 310 (426)
Q Consensus 239 ~~~vFG~VieGldvl~~I~~l~~~--~~~P~----~~i~ilk~a~~~~~~G~~~--f~~g~y~~Ai~~y~kAl~~~~~~~ 310 (426)
...+=|-|.+|.+++.+....... ..+-. ......-..+.+-..|..+ ..-++...-+.+|-+.=.
T Consensus 11 ~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 11 ERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK------ 84 (161)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred HHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc------
Confidence 445566777777777666544431 11100 1111111233344444432 334555555555533221
Q ss_pred ccchhhhhhhcCcchHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 311 QSQSKTQQKHFRSYYTAALLNMAAVQL-KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 311 ~~~~~~~~~~~~p~~~~~~~nlA~~~~-~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
..=|..+|.-++ ..++-++--+.++..++-+..+++.++.+|.+|..+|+..+|-+.+.+|.+-
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 123445555444 4555555555556666666778999999999999999999999999998764
No 422
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=64.02 E-value=86 Score=31.11 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccchhh----hhhhcCcchHHHHHHHHHHHHHccCHH------------------HHHH
Q psy6102 290 NRMHDAQRKYKKAVRYIKWYNQSQSKT----QQKHFRSYYTAALLNMAAVQLKFKAYK------------------RAIN 347 (426)
Q Consensus 290 g~y~~Ai~~y~kAl~~~~~~~~~~~~~----~~~~~~p~~~~~~~nlA~~~~~lg~~~------------------~Ai~ 347 (426)
.....|..+|++|.-++.......... ...++.+....++..++.+.-+.--+. ++..
T Consensus 135 ~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liakLa~~~~~ 214 (345)
T cd09034 135 EDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAK 214 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 568888888888888766554432221 224666677777776665554432222 3334
Q ss_pred HHHHHHHh----CCC--------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 348 LCDDILLM----EPN--------------------NVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 348 ~~~~AL~l----dp~--------------------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
.|+.|++. +.. .+-++|..|..+...+++.+|+..++.|...
T Consensus 215 ~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 215 YYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 45555432 111 1346788888888888999999999988764
No 423
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.94 E-value=1.2e+02 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLME 356 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld 356 (426)
-+.+....|.+..+.|+...|+.+++++-.-.
T Consensus 93 pvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 93 PVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred hHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 34566677778889999999999998876543
No 424
>KOG2422|consensus
Probab=63.11 E-value=2e+02 Score=30.97 Aligned_cols=92 Identities=8% Similarity=0.087 Sum_probs=55.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc--chhhhhhh---cCcchHH---HHHHHHHHHHHccCHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--QSKTQQKH---FRSYYTA---ALLNMAAVQLKFKAYKRAI 346 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~--~~~~~~~~---~~p~~~~---~~~nlA~~~~~lg~~~~Ai 346 (426)
.+..+..++...-.+|+.+.|.....+||=.++..-+. ....-+.. ..|.+-. +++..-..+.+.|.+..|.
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Confidence 45667777777777888888888877777654332221 01011111 1233322 2233334555789999999
Q ss_pred HHHHHHHHhCCC-CHHHHHHH
Q psy6102 347 NLCDDILLMEPN-NVKALFRR 366 (426)
Q Consensus 347 ~~~~~AL~ldp~-~~kal~~l 366 (426)
++|+..+.++|. ++-+...+
T Consensus 363 E~cKlllsLdp~eDPl~~l~~ 383 (665)
T KOG2422|consen 363 EWCKLLLSLDPSEDPLGILYL 383 (665)
T ss_pred HHHHHHhhcCCcCCchhHHHH
Confidence 999999999998 65544333
No 425
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=63.05 E-value=1.4e+02 Score=29.89 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccch----hhhhhhcCcchHHHHHHHHHHHHHccCHHHH-----------------HHHHH
Q psy6102 292 MHDAQRKYKKAVRYIKWYNQSQS----KTQQKHFRSYYTAALLNMAAVQLKFKAYKRA-----------------INLCD 350 (426)
Q Consensus 292 y~~Ai~~y~kAl~~~~~~~~~~~----~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~A-----------------i~~~~ 350 (426)
+..|..+|++|--.+....+... .....++.+....++..+..+..+.--|.+| ...|+
T Consensus 144 lK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~~~~k~~liAKLa~qv~~~Y~ 223 (346)
T cd09240 144 LKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALMLAQAQEVFYLKATRDKMKDAIIAKLAAQAADYYG 223 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 67888888888877655444311 1233455666666666666555443223222 33454
Q ss_pred HHHHh--C-------CCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 351 DILLM--E-------PNN-------------VKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 351 ~AL~l--d-------p~~-------------~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
.|++. . |.. ..++|+.|..+...+++.+|+..++.|..
T Consensus 224 ~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 224 DAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 54432 1 111 44678888888888999999999998876
No 426
>KOG1463|consensus
Probab=62.93 E-value=42 Score=33.55 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHH--HHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA--INLCDDI 352 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~A--i~~~~~A 352 (426)
.+..-..-|-.+...+||..|-.+|-+|.+-...... +..-...+-.+-.|..-++..++- +-..+.+
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~----------~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~ 277 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD----------DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLA 277 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccccccCC----------cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHH
Confidence 3455667889999999999999999999885332221 122333444455566666666654 4455778
Q ss_pred HHhCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102 353 LLMEPNNVKALFRRGRAQ--VSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405 (426)
Q Consensus 353 L~ldp~~~kal~~lg~a~--~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~ 405 (426)
++.+.....|+...|.++ ..+.+|+.|+..|.+=|.-|| -+...+..++.
T Consensus 278 l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 278 LKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYD 329 (411)
T ss_pred HhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHH
Confidence 888899999999999997 456889999999988776655 44444444443
No 427
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.81 E-value=42 Score=35.07 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f 422 (426)
.+....+|.--+..|+|.-+.+.+++++--+|+|.++...++.++.+++=..+. ..|+.++
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~--A~wRn~y 512 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES--ATWRNFY 512 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc--chhhhhH
Confidence 345677888889999999999999999999999999999999999998855443 3444443
No 428
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=62.16 E-value=17 Score=37.83 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChHHHHHHHHhhhC
Q psy6102 25 GRMVIELFKHIVPKTAENFRALCTG 49 (426)
Q Consensus 25 G~i~~~l~~~~~P~~~~nf~~l~~~ 49 (426)
=.+.+||-++ +|+++++|+.+.+.
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~~ 224 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALMED 224 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHhC
Confidence 3677898887 99999999999964
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.08 E-value=27 Score=33.05 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Q psy6102 291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILL 354 (426)
Q Consensus 291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~-lg~~~~Ai~~~~~AL~ 354 (426)
--+.|...|++|+++.... ....+|....+..|.+..|+. +++.++|++.++.|+.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~--------L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKE--------LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcc--------cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4578999999999985431 122367777788888887764 8999999999988863
No 430
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.89 E-value=12 Score=28.91 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=27.9
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK 307 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~ 307 (426)
..+..+...|...=..|+|++|+.+|.+||+++-
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Confidence 3556667777777889999999999999999853
No 431
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=61.49 E-value=90 Score=31.38 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH-----------------HHHHHHHH
Q psy6102 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK-----------------RAINLCDD 351 (426)
Q Consensus 289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~-----------------~Ai~~~~~ 351 (426)
...+..|..+|++|-.++.............++++....++.++..+..+.--+. ++.+.|+.
T Consensus 129 ~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~~~~~~~liAKLa~~~~~~Y~~ 208 (377)
T PF03097_consen 129 DEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECFYEKAIADKKKPSLIAKLAAQASELYDE 208 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTG-HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence 3467889999999988876655442223333567777777777755554432222 23334444
Q ss_pred HHHhCC---------C-------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 352 ILLMEP---------N-------------NVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 352 AL~ldp---------~-------------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
|...-. . .+.++|..|..+...+++.+|+..++.|...
T Consensus 209 a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~ 268 (377)
T PF03097_consen 209 AHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEA 268 (377)
T ss_dssp HHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 443211 1 1347788888888889998888888887653
No 432
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.25 E-value=21 Score=21.19 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102 340 KAYKRAINLCDDILLMEPNNVKALFRRGRA 369 (426)
Q Consensus 340 g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a 369 (426)
|+++.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999999999877653
No 433
>KOG0890|consensus
Probab=61.03 E-value=2e+02 Score=36.08 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=62.7
Q ss_pred cCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390 (426)
Q Consensus 321 ~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~ 390 (426)
++..-.++|.+.|.+..+.|+++.|-.+.-.|.+.. -++++..+|..++..|+-..|+..++..++++
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 367788999999999999999999999998888877 78999999999999999999999999999764
No 434
>PRK00969 hypothetical protein; Provisional
Probab=59.60 E-value=19 Score=37.55 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHhhhC
Q psy6102 25 GRMVIELFKHIVPKTAENFRALCTG 49 (426)
Q Consensus 25 G~i~~~l~~~~~P~~~~nf~~l~~~ 49 (426)
=.+.+||-++ +|+.+++|+.+.+.
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~ 227 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLED 227 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhC
Confidence 3677899888 99999999999964
No 435
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=59.37 E-value=11 Score=32.88 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=30.8
Q ss_pred eeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCccccccccc--EEeeCcc
Q psy6102 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQF--MIQGGDI 81 (426)
Q Consensus 25 G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~--~iq~G~~ 81 (426)
-.++.+|..|.||+||+-|.+.-- |.+..+|-...+- +|.-|+.
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~LP-------------~~~~~~HarwSG~ei~~~l~~~ 53 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEALP-------------LKGKVIHARWSGEEIWIPLPDF 53 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--
T ss_pred eEEEEEEcccCChHHHHHHHHhCC-------------CCCcEEEEEEECcEEEEECCCc
Confidence 367899999999999999999763 8899999887764 5555654
No 436
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=58.46 E-value=41 Score=25.46 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=6.8
Q ss_pred cCChHHHHHHHHHHH
Q psy6102 373 MNNFEQGLQDYEQAL 387 (426)
Q Consensus 373 lg~~~~Al~~l~kAl 387 (426)
.|++++|+.+|..|+
T Consensus 21 ~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 21 AGDYEEALELYKKAI 35 (77)
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 437
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=58.32 E-value=1.3e+02 Score=30.38 Aligned_cols=99 Identities=11% Similarity=0.170 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchh------hhhhhcCcchHHHHHHHHHHHHHccCHHHH-----------------HH
Q psy6102 291 RMHDAQRKYKKAVRYIKWYNQSQSK------TQQKHFRSYYTAALLNMAAVQLKFKAYKRA-----------------IN 347 (426)
Q Consensus 291 ~y~~Ai~~y~kAl~~~~~~~~~~~~------~~~~~~~p~~~~~~~nlA~~~~~lg~~~~A-----------------i~ 347 (426)
....|..+|++|--.+....+.... ....++.+....++..++.+.-+-=-+.+| .+
T Consensus 136 ~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~k~k~sliaKLA~q~a~ 215 (353)
T cd09243 136 EAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYINQCTAEAQEVTVARAIELKHNAGLISALAYETAK 215 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 4667777888877765544432110 123455666666766665554443223332 33
Q ss_pred HHHHHHHh----CC----CC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 348 LCDDILLM----EP----NN------------VKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 348 ~~~~AL~l----dp----~~------------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
.|++|.+. .+ .. +.++|+.|..+...+++.+|+..++.|..+
T Consensus 216 ~Y~~A~~~l~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~ 277 (353)
T cd09243 216 LFQKADDSLSSLDPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKL 277 (353)
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHH
Confidence 55555433 11 11 447888888888889999999999888763
No 438
>KOG1464|consensus
Probab=57.72 E-value=37 Score=32.98 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=72.4
Q ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359 (426)
Q Consensus 280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~ 359 (426)
..+|+.+|..++|.+-.....+.-. ....++.++...-......+|.---.+|-..++-.+-...|.++|.+...-
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~----SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQ----SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHH----HhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 4689999999998875544444333 333333333333345557777777788888888888888999999886533
Q ss_pred --HHHHHHH----HHHHHHcCChHHHHHHHHHHHHh
Q psy6102 360 --VKALFRR----GRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 360 --~kal~~l----g~a~~~lg~~~~Al~~l~kAl~l 389 (426)
+..+-.+ |..++..|++++|-.+|-.|++-
T Consensus 225 PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 225 PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 3322222 45678889999999988888774
No 439
>KOG1258|consensus
Probab=57.51 E-value=1.1e+02 Score=32.67 Aligned_cols=126 Identities=9% Similarity=0.035 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR 368 (426)
Q Consensus 289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~ 368 (426)
.....+.+..|...|.. ++ -....+++....-|.....--...|+++...-.+++++--...+.+.|++.+.
T Consensus 268 s~~~~~kr~~fE~~Ikr-pY-------fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~ 339 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKR-PY-------FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYAR 339 (577)
T ss_pred hHhHHHHHHhhhhhccc-cc-------cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 33444555555555553 11 11222355566677777788889999999999999999988999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102 369 AQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 423 (426)
Q Consensus 369 a~~~lg~~~~Al~~l~kAl~l~-P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~ 423 (426)
-....|+.+-|-..+.++.++. |+.+.+...-+.+....++...| +..+++..+
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A-~~~lq~i~~ 394 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDA-KVILQRIES 394 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHH-HHHHHHHHh
Confidence 9999999999999999998874 66666666666666666666655 446666543
No 440
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=57.47 E-value=31 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy6102 346 INLCDDILLMEPNNVKALFRRGRAQV 371 (426)
Q Consensus 346 i~~~~~AL~ldp~~~kal~~lg~a~~ 371 (426)
++....+|..+|.+..+|..|-.++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 44555666666666666665555443
No 441
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=56.83 E-value=66 Score=24.75 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhCCCcHH
Q psy6102 379 GLQDYEQALDLLPNDQQ 395 (426)
Q Consensus 379 Al~~l~kAl~l~P~n~~ 395 (426)
|++.|..+++..|+...
T Consensus 32 aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 32 GIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHhhCCCHHH
Confidence 33444455556665443
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.58 E-value=1.1e+02 Score=34.45 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=70.0
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ 354 (426)
.++..--.|.+....++.++|+++-..++..++... .-....++...|.+..-.|++.+|+.+...+.+
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-----------~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-----------YRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc-----------chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 344445567778889999999999999999865433 455677899999999999999999999999988
Q ss_pred h----CCCC--HHHHHHHHHHHHHcCC
Q psy6102 355 M----EPNN--VKALFRRGRAQVSMNN 375 (426)
Q Consensus 355 l----dp~~--~kal~~lg~a~~~lg~ 375 (426)
+ +.-+ ..+.+..+.++..+|+
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 7 4433 3345566788888883
No 443
>KOG4459|consensus
Probab=56.00 E-value=28 Score=35.94 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch-----hh---------hhhhcCc----chHHHHHHHHHHHH
Q psy6102 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-----KT---------QQKHFRS----YYTAALLNMAAVQL 337 (426)
Q Consensus 276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~-----~~---------~~~~~~p----~~~~~~~nlA~~~~ 337 (426)
....+.-|...+..++|.+++..+.+||+........+. .+ ....-.+ ....-+..++.|..
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLR 110 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999997544333210 00 0000000 11223333444443
Q ss_pred HccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 338 KFKAYKRAINLCDDILLMEPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 338 ~lg~~~~Ai~~~~~AL~ldp~~----------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
+ |...+.-.|.. -..|-.+-.+|++.|.+..|++.-...+-.+|++..+..++..-...+
T Consensus 111 r----------Ckg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l 180 (471)
T KOG4459|consen 111 R----------CKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTML 180 (471)
T ss_pred H----------HhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhcc
Confidence 3 33333222211 356777888999999999999999999999999999999998877555
Q ss_pred hhH
Q psy6102 408 RHH 410 (426)
Q Consensus 408 ~~~ 410 (426)
+..
T Consensus 181 ~~s 183 (471)
T KOG4459|consen 181 GVS 183 (471)
T ss_pred CCC
Confidence 544
No 444
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.61 E-value=68 Score=29.19 Aligned_cols=112 Identities=11% Similarity=0.015 Sum_probs=69.9
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch--HHHHHHHHHHHHHccCHHHHHHHHHHH-H
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY--TAALLNMAAVQLKFKAYKRAINLCDDI-L 353 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~--~~~~~nlA~~~~~lg~~~~Ai~~~~~A-L 353 (426)
......|....++|+-..|+..|.++-.-.+ -|.- -.+...-|..+...|.|++-..-.+-. -
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~--------------~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~ 160 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTS--------------IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG 160 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCC--------------CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC
Confidence 4566777888889999999999988765311 1222 234444555666778887765543221 1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 403 (426)
Q Consensus 354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i 403 (426)
.-+|--..+--.+|.+-++.|++..|...|.+... |-..+....+..++
T Consensus 161 d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 161 DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 22344455666678888888999999998887766 44444433333333
No 445
>KOG3616|consensus
Probab=55.51 E-value=48 Score=36.48 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=14.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHH
Q psy6102 282 SGNEYFKLNRMHDAQRKYKKAV 303 (426)
Q Consensus 282 ~G~~~f~~g~y~~Ai~~y~kAl 303 (426)
-|.-+.+.|+++.|+.+|-+|-
T Consensus 712 wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh
Confidence 3666667777777777765443
No 446
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.45 E-value=51 Score=34.36 Aligned_cols=29 Identities=7% Similarity=-0.076 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDI 352 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A 352 (426)
.+...|..+|...++.|+++-|.++|.++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 35667777777777777777777777664
No 447
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.95 E-value=24 Score=27.50 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 341 ~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
.|+.|.+..++||..|. .|+.+.|+.+|++++..
T Consensus 4 ~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHHH
Confidence 35566666666665553 46667777777776653
No 448
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=53.75 E-value=1.8e+02 Score=29.27 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=60.8
Q ss_pred hHHHHHHhccchhhhhh---------hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCH--
Q psy6102 274 DVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY-- 342 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g---------~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~-- 342 (426)
+.+..++++|-.+.+.+ ....|..+|++|--.+....+.........+.+....++..+..+..+---+
T Consensus 104 EkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l~e~~~~~ps~Dls~~~L~~L~~LmLAQAQEc~~~K 183 (350)
T cd09244 104 EKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLRENFSNAPSMDLSPEMLEALIKLMLAQAQECVFEK 183 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554333 3778888888887766554443222223345555566555554443322111
Q ss_pred ---------------------HHHHHHHHHHHHh---CC-------CC------------HHHHHHHHHHHHHcCChHHH
Q psy6102 343 ---------------------KRAINLCDDILLM---EP-------NN------------VKALFRRGRAQVSMNNFEQG 379 (426)
Q Consensus 343 ---------------------~~Ai~~~~~AL~l---dp-------~~------------~kal~~lg~a~~~lg~~~~A 379 (426)
.++-.+|++|.+. ++ +. +-++|+.|..+....++.++
T Consensus 184 ai~d~~~k~~~~~~~~lAklA~qv~~~Y~~a~~~~~~~~~~~~i~~~W~~~v~~K~~~f~AlA~y~~a~~l~~~~~~g~~ 263 (350)
T cd09244 184 LVLPGEDSKDIQACLDLAQEAAQVSDCYSEVHKLMNQEPVKDYIPYSWISLVEVKSEHYKALAHYYAAMGLLLEERRLLG 263 (350)
T ss_pred HHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1222345555443 11 00 23556666666666777777
Q ss_pred HHHHHHHHH
Q psy6102 380 LQDYEQALD 388 (426)
Q Consensus 380 l~~l~kAl~ 388 (426)
+..++.|+.
T Consensus 264 ~a~L~~A~~ 272 (350)
T cd09244 264 KAHLKEALL 272 (350)
T ss_pred HHHHHHHHH
Confidence 777777765
No 449
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.02 E-value=1.1e+02 Score=31.05 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=43.1
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHH--HccCHHHHHHHHH
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL--KFKAYKRAINLCD 350 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~--~lg~~~~Ai~~~~ 350 (426)
....+..+|...+|..|...|.++++..... ........+..++.+|. ..-++++|.+.++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~-----------~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSA-----------VNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccCh-----------hhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3456668899999999999999998762110 02344566777777766 4678888888887
No 450
>KOG0985|consensus
Probab=52.86 E-value=2.2e+02 Score=32.94 Aligned_cols=61 Identities=15% Similarity=0.015 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
..+.+|..+|.+.++.+...+|++.|-+| +++..|...-.+-...|.|++-+.++..|.+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 45779999999999999999999998554 67778888888888999999999999988764
No 451
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=52.86 E-value=1.5e+02 Score=34.97 Aligned_cols=140 Identities=19% Similarity=0.108 Sum_probs=90.9
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-ch------------hhhhhh--------------------
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-QS------------KTQQKH-------------------- 320 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-~~------------~~~~~~-------------------- 320 (426)
...+..+.+|+.+...|.|.+|+..|.+|+..+...... |. ......
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 356788999999999999999999999999976443322 00 000000
Q ss_pred ------------cCcchH-------HH-HHHHHHHHHHccCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcC
Q psy6102 321 ------------FRSYYT-------AA-LLNMAAVQLKFKAYKRAINLCDDILLME----PN--NVKALFRRGRAQVSMN 374 (426)
Q Consensus 321 ------------~~p~~~-------~~-~~nlA~~~~~lg~~~~Ai~~~~~AL~ld----p~--~~kal~~lg~a~~~lg 374 (426)
..|.+. .. ..+.....+-...+++|+.+|.++.... |. ..++..+.+..+....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 001110 00 0011111222335889999999997332 32 4788999999988888
Q ss_pred --------------------ChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhhHHHH
Q psy6102 375 --------------------NFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNL 413 (426)
Q Consensus 375 --------------------~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~~~l~~~~~a 413 (426)
...++.+.+.+|+.+...+ -.+...++.++..+|-.+++
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 8889999999998865432 35677778888888766554
No 452
>KOG1914|consensus
Probab=52.05 E-value=63 Score=34.32 Aligned_cols=69 Identities=9% Similarity=0.064 Sum_probs=58.3
Q ss_pred hhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 319 ~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
.+.+|.+..+|+.+-.-+... -++++.+.|++.+...|..+.+|-......+.-.+|+.-...|.++|.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344899999999887666544 899999999999999999999998888888888899888888888765
No 453
>KOG1914|consensus
Probab=51.81 E-value=73 Score=33.85 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=57.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102 350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415 (426)
Q Consensus 350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k 415 (426)
++-++.+|.+..+|+.+-+=+..+ -+++..+.|++.+...|..+.+|......+.+.++++.-++
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEk 74 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEK 74 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHH
Confidence 677899999999999998866666 99999999999999999999999998888888777776654
No 454
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.70 E-value=25 Score=27.03 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=11.9
Q ss_pred cCChHHHHHHHHHHHHh
Q psy6102 373 MNNFEQGLQDYEQALDL 389 (426)
Q Consensus 373 lg~~~~Al~~l~kAl~l 389 (426)
.|+|++|+..|..|+++
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56777777777777664
No 455
>KOG3616|consensus
Probab=51.08 E-value=68 Score=35.37 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHH
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKK 301 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~k 301 (426)
+.|-..|..+-+..++++|+++|.+
T Consensus 662 elydkagdlfeki~d~dkale~fkk 686 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKK 686 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHc
Confidence 4455677777788888899888654
No 456
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.98 E-value=3e+02 Score=29.33 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102 323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 402 (426)
Q Consensus 323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~ 402 (426)
|.+-.++..+-..+-..-.+.-....|++.|... .+-.+|+.+++||... ..+.-...+++..+.+-++...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3333444444344444445555556777777665 3566777777777776 5566667777777777777777777777
Q ss_pred HHHHHhhHHHHH--HHHHHhhh
Q psy6102 403 VRKQMRHHLNLE--KMTYARMF 422 (426)
Q Consensus 403 i~~~l~~~~~a~--k~~~~k~f 422 (426)
.+...+....+. +++.++++
T Consensus 141 ~yEkik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHhchhhHHHHHHHHHHHhc
Confidence 776655444332 44444443
No 457
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.38 E-value=3.4e+02 Score=28.96 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=45.1
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHhCCCc
Q psy6102 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS--------------------MNNFEQGLQDYEQALDLLPND 393 (426)
Q Consensus 336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~--------------------lg~~~~Al~~l~kAl~l~P~n 393 (426)
|-...+|.+|++...-.|++|..+.+|.-++-.-+.. -.++..|+.+|++.+.++..|
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 3346789999999999999999998887776666655 466778888888888777655
No 458
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=50.09 E-value=31 Score=34.87 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHhhhC
Q psy6102 25 GRMVIELFKHIVPKTAENFRALCTG 49 (426)
Q Consensus 25 G~i~~~l~~~~~P~~~~nf~~l~~~ 49 (426)
-.+.+||-+. +|+.+++|++|...
T Consensus 203 Ty~eve~s~n-sP~saEH~lalmed 226 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALMED 226 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHhhc
Confidence 4678888877 99999999999953
No 459
>KOG1464|consensus
Probab=48.91 E-value=48 Score=32.18 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=44.0
Q ss_pred HccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 338 KFKAYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 338 ~lg~~~~Ai~~~~~AL~ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
+..++++|+..++++|++.+.. .+|+-.+-.+++.+++|++-.+.|.+.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4558999999999999999865 67888888999999999998888887765
No 460
>KOG4563|consensus
Probab=47.35 E-value=46 Score=33.49 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=51.9
Q ss_pred hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH
Q psy6102 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN 347 (426)
Q Consensus 271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~ 347 (426)
.+.+.+..+...|+.++..++++.|...|..|..++..... +-.-....+++..|.+++++++....+-
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~G--------e~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYG--------EKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567888999999999999999999999999998643221 1123456777888888888777665543
No 461
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.96 E-value=1.7e+02 Score=29.30 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=43.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386 (426)
Q Consensus 339 lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kA 386 (426)
....-+|+-.++.++..+|.|....+.+-.+|..+|-...|...|+..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 456778888999999999999999999999999999999999988653
No 462
>KOG2041|consensus
Probab=46.94 E-value=1.6e+02 Score=32.41 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHcCChHHHHH
Q psy6102 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLM----------------------EPNNVKALFRRGRAQVSMNNFEQGLQ 381 (426)
Q Consensus 324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l----------------------dp~~~kal~~lg~a~~~lg~~~~Al~ 381 (426)
..-.++.++|..+..+-.|++|.++|...=.. -|++.+.+=.+|.++...|--++|++
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 34568999999999999999999988654221 14455555555555555555555555
Q ss_pred HH
Q psy6102 382 DY 383 (426)
Q Consensus 382 ~l 383 (426)
+|
T Consensus 874 a~ 875 (1189)
T KOG2041|consen 874 AY 875 (1189)
T ss_pred HH
Confidence 54
No 463
>PF12854 PPR_1: PPR repeat
Probab=46.49 E-value=43 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDD 351 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~ 351 (426)
+...|..+-..|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 355677777888888888888887654
No 464
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=45.48 E-value=2.3e+02 Score=29.13 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=70.2
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCH--------------
Q psy6102 277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY-------------- 342 (426)
Q Consensus 277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~-------------- 342 (426)
.....+|..+|-.+||+.|...|..+.+-..... . --..+.++-..|.|.+..+..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk------a----w~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~l 278 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK------A----WKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYL 278 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch------h----HHHHHhHHHHHHHHHHhcCCCCccccccccHHHHH
Confidence 4567899999999999999999998877421100 0 112234455556666655532
Q ss_pred HHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--C--CC---cHHHHHHHHHHH
Q psy6102 343 KRAINLCDDI----LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--L--PN---DQQILKEIAFVR 404 (426)
Q Consensus 343 ~~Ai~~~~~A----L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~--P~---n~~a~~~l~~i~ 404 (426)
+.|+..|..+ ......-..+.+..+.++...+.+.+|...+-++... + -. ....+..++.+.
T Consensus 279 e~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 279 ENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred HHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 3333334332 1111233556677777888889888887776666655 2 22 334455555555
No 465
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=45.17 E-value=71 Score=19.50 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102 379 GLQDYEQALDLLPNDQQILKEIAFVRKQM 407 (426)
Q Consensus 379 Al~~l~kAl~l~P~n~~a~~~l~~i~~~l 407 (426)
.++...+++..+|.|..++.....+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 56778899999999999999988887654
No 466
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=43.72 E-value=3.5e+02 Score=27.13 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcccch----hhhhhhcCcchHHHHHHHHHHHHHccCHHHH-----------------HHHH
Q psy6102 291 RMHDAQRKYKKAVRYIKWYNQSQS----KTQQKHFRSYYTAALLNMAAVQLKFKAYKRA-----------------INLC 349 (426)
Q Consensus 291 ~y~~Ai~~y~kAl~~~~~~~~~~~----~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~A-----------------i~~~ 349 (426)
...+|..+|++|--.+........ .....++.+....++..+..+..+---+.+| ...|
T Consensus 135 glK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~~~k~sliAKLa~qv~~~Y 214 (353)
T cd09246 135 GIKQACHAFQAAAGAFAHLRDKVSGKTGGFRTPDLTAECLGMLESLMLAQAQECFYEKAVADGKSPAVCSKLAKQARSYY 214 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 478888888888876655443211 0123345566666666655544333222222 2344
Q ss_pred HHHHHh---CC-------C------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 350 DDILLM---EP-------N------------NVKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 350 ~~AL~l---dp-------~------------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
..|.+. ++ . .+.++|+.|..+...+++.+|+..++.|..
T Consensus 215 ~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~ 275 (353)
T cd09246 215 EEALEALDSPPLKGHFDKSWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASD 275 (353)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHH
Confidence 444432 11 1 134678888888888999999999998865
No 467
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.35 E-value=2.5e+02 Score=28.46 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC-HHHHHHHHHH--HHHcCChHHHHHHHHHHHHh
Q psy6102 327 AALLNMAAVQLKFKAYKRAINLCDDILLM-EPNN-VKALFRRGRA--QVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l-dp~~-~kal~~lg~a--~~~lg~~~~Al~~l~kAl~l 389 (426)
.....++..++..++|..|.+.+...+.. .+.. ...+..+..+ ++..-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35567778888999999999999999875 4433 3455555444 57789999999999988765
No 468
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.21 E-value=3e+02 Score=26.13 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=66.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---
Q psy6102 285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK--- 361 (426)
Q Consensus 285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~k--- 361 (426)
.+.+.+..++||.....-++. +|.+......+=..+.-.|+|++|+.-++-+-.++|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVka----------------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ 73 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKA----------------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGAS 73 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhc----------------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHH
Confidence 455667788888887777776 8988888888888899999999999999999999998743
Q ss_pred HHHHHHHHHHH-------------c-CChHHHHHHHHHHHHhCCC
Q psy6102 362 ALFRRGRAQVS-------------M-NNFEQGLQDYEQALDLLPN 392 (426)
Q Consensus 362 al~~lg~a~~~-------------l-g~~~~Al~~l~kAl~l~P~ 392 (426)
.|..+-.|-.. + |...+=+..+..|+.++.+
T Consensus 74 lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 74 LYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 22222222111 1 2556666777777777665
No 469
>KOG0292|consensus
Probab=42.91 E-value=1e+02 Score=34.65 Aligned_cols=131 Identities=9% Similarity=0.089 Sum_probs=79.0
Q ss_pred hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHH-------HccCHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL-------KFKAYKRA 345 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~-------~lg~~~~A 345 (426)
+.....-.+.|..+...|.+.+|+++|..+|-.++-..... .++..+.+.....+...+....+ .....+++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~-~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDS-KEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecc-hhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 34456677889999999999999999999987654332211 11111111111111111111111 12234555
Q ss_pred --HHHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102 346 --INLCDDILLMEPNNVKALFRRGR-AQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 404 (426)
Q Consensus 346 --i~~~~~AL~ldp~~~kal~~lg~-a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~ 404 (426)
+..|=.-+.|.|-+.-.-.+.|. ++++++++..|-....+.+++-|..+.|......+.
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~ 1128 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQ 1128 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 33444445677766554455554 578899999999999999999999887765544443
No 470
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=42.72 E-value=18 Score=36.49 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.5
Q ss_pred eEEEEecCCCChHHHHHHHHhh
Q psy6102 26 RMVIELFKHIVPKTAENFRALC 47 (426)
Q Consensus 26 ~i~~~l~~~~~P~~~~nf~~l~ 47 (426)
-|+||||.+.||.++.-|+++.
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 5899999999999999999876
No 471
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=42.32 E-value=77 Score=23.83 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHHH
Q psy6102 374 NNFEQGLQDYEQAL 387 (426)
Q Consensus 374 g~~~~Al~~l~kAl 387 (426)
|++++|+..|..|+
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 472
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=42.14 E-value=56 Score=20.53 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=15.5
Q ss_pred HHHHHHH--HHHHHcC-----ChHHHHHHHHHHHHh
Q psy6102 361 KALFRRG--RAQVSMN-----NFEQGLQDYEQALDL 389 (426)
Q Consensus 361 kal~~lg--~a~~~lg-----~~~~Al~~l~kAl~l 389 (426)
++.+.+| .++..-. ++++|+..|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 3333322 356666666666543
No 473
>PF15469 Sec5: Exocyst complex component Sec5
Probab=42.05 E-value=1.8e+02 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=17.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHh
Q psy6102 286 YFKLNRMHDAQRKYKKAVRYIKW 308 (426)
Q Consensus 286 ~f~~g~y~~Ai~~y~kAl~~~~~ 308 (426)
+.+.|+|+.|+..|.+|-.+...
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~ 118 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEK 118 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHH
Confidence 45678888899888888887543
No 474
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.04 E-value=39 Score=26.29 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=28.8
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK 307 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~ 307 (426)
+.|..+.+.|..+=..|+.++|+.+|.++++.+.
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 4567777888888888999999999999999864
No 475
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.81 E-value=1.4e+02 Score=25.56 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=56.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHH----Hh
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNN---------------VKALFRRGRAQVSMNNFEQGLQDYEQAL----DL 389 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---------------~kal~~lg~a~~~lg~~~~Al~~l~kAl----~l 389 (426)
+..+|...++.+++-.|+-.|++|+.+..+- +-...++|.-+..+|+.+-.+++++-|- .+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888889999999999999998663211 3346789999999999999999998664 45
Q ss_pred CCCcH-----HHHHHHHHHHHHH
Q psy6102 390 LPNDQ-----QILKEIAFVRKQM 407 (426)
Q Consensus 390 ~P~n~-----~a~~~l~~i~~~l 407 (426)
-|.-+ .....++-+...+
T Consensus 84 iPQCp~~~C~afi~sLGCCk~AL 106 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKAL 106 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHH
Confidence 66543 3345555554443
No 476
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=41.30 E-value=3.7e+02 Score=26.87 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCH--------------------HHHHHH
Q psy6102 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY--------------------KRAINL 348 (426)
Q Consensus 289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~--------------------~~Ai~~ 348 (426)
......|..+|++|--.+....+........++.+....++..+..+.-+.=-+ .++...
T Consensus 129 ~~~~K~A~~~fq~AAG~f~~l~e~~~~~ps~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~~~~k~sliaKLa~~~~~~ 208 (348)
T cd09242 129 EDDLKEAITNLQQAAGCFQYINENFLHAPSVDLQQENVKFLVKLMLAQAQEIFLLKLINGDDAQKKASLISKLASATANL 208 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 345788888888888776554432111222344555555555554443331111 123334
Q ss_pred HHHHHHh----CCC-------C-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102 349 CDDILLM----EPN-------N-------------VKALFRRGRAQVSMNNFEQGLQDYEQALDL 389 (426)
Q Consensus 349 ~~~AL~l----dp~-------~-------------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l 389 (426)
|++|.+. .+. . +.++|+.|..+...+++.+|+..++.|...
T Consensus 209 Y~~a~~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 273 (348)
T cd09242 209 YESCVEFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAESI 273 (348)
T ss_pred HHHHHHHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHH
Confidence 4444332 111 1 336677777778888999999999988763
No 477
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.29 E-value=3.3e+02 Score=26.05 Aligned_cols=67 Identities=10% Similarity=-0.061 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHH----------------HHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHH
Q psy6102 323 SYYTAALLNMAAVQLKFKAYKRAINLCDD----------------ILLMEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQ 385 (426)
Q Consensus 323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~----------------AL~ldp~~~kal~~lg~a-~~~lg~~~~Al~~l~k 385 (426)
-.++.+...+|..+.+-+++.+|...+-. .-+-.|.....+..||.. |..+++...|...+..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35566666666666666666666553210 112346666777777765 5666777777776655
Q ss_pred HHHh
Q psy6102 386 ALDL 389 (426)
Q Consensus 386 Al~l 389 (426)
.++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 478
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=40.88 E-value=53 Score=20.14 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHHHH
Q psy6102 362 ALFRRGRAQVSM----NNFEQGLQDYEQALD 388 (426)
Q Consensus 362 al~~lg~a~~~l----g~~~~Al~~l~kAl~ 388 (426)
+.+.+|.+|..- .+..+|+..|++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 455555555421 255666666665544
No 479
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.77 E-value=78 Score=26.76 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102 364 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401 (426)
Q Consensus 364 ~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~ 401 (426)
..+|..+...|++++|..+|-+|+...|+-.+.+.-+.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35677777778888888888888888777665554444
No 480
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.72 E-value=60 Score=24.99 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=11.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHH
Q psy6102 332 MAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 332 lA~~~~~lg~~~~Ai~~~~~AL 353 (426)
+|.-.-+.|+|++|+.+|..++
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333345566666666655554
No 481
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.14 E-value=97 Score=29.54 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Q psy6102 292 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILL 354 (426)
Q Consensus 292 y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~-lg~~~~Ai~~~~~AL~ 354 (426)
-+.|...|++|+++... .....+|....+..|.+..|+. +++.++|++..++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~--------~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALA--------ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHc--------cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56889999999988432 1112256667778888877775 6999999988887764
No 482
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=40.10 E-value=1.5e+02 Score=21.80 Aligned_cols=17 Identities=29% Similarity=0.685 Sum_probs=8.7
Q ss_pred HcCChHHHHHHHHHHHH
Q psy6102 372 SMNNFEQGLQDYEQALD 388 (426)
Q Consensus 372 ~lg~~~~Al~~l~kAl~ 388 (426)
..|++++|+..|..|++
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 35555555555555544
No 483
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.76 E-value=84 Score=25.65 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC
Q psy6102 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA 341 (426)
Q Consensus 271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~ 341 (426)
...+.+......|...+..|||..|.+...++-+. .+.-...|..-|.+...+||
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~----------------~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL----------------SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHHcCC
No 484
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=39.62 E-value=4.1e+02 Score=27.17 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=36.8
Q ss_pred hhHHHHHHhccchhhhhhh---------HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHH
Q psy6102 273 EDVIRTIKNSGNEYFKLNR---------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ 336 (426)
Q Consensus 273 lk~a~~~~~~G~~~f~~g~---------y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~ 336 (426)
.+.+..++++|-.+.+.+- +..|..+|++|--.+..............+.+....++..+-.+.
T Consensus 103 FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~Ps~Dms~~~L~~L~~LMLAQ 175 (384)
T cd09248 103 FEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFSNAPSPDMSTASLSMLEQLMVAQ 175 (384)
T ss_pred HHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCHHHHHHHHHHHHHH
Confidence 3456667777776655543 788889999888776554433221222344555555555554433
No 485
>KOG0985|consensus
Probab=39.62 E-value=2.6e+02 Score=32.34 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=76.8
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q psy6102 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-- 356 (426)
Q Consensus 279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld-- 356 (426)
....|+.+|..+.|+.|.-+|.. ++-|..+|..+..+|+|..|....++|=...
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~------------------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN------------------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH------------------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 56778889999999988877753 3446678888999999999988877763221
Q ss_pred ---------C--------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102 357 ---------P--------------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408 (426)
Q Consensus 357 ---------p--------------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~ 408 (426)
. -+++-+-.+-.-|...|-+++-+..++.+|-++..+-.....|+-++..-+
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 0 023334444455677888999999999999888877777777777776543
No 486
>KOG1497|consensus
Probab=39.29 E-value=4.1e+02 Score=26.61 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=65.5
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..+.....++..|-+.++|..|..... +|.. ... ..+.. .......+..+|..|++.++..+|..+.+++-
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~---~tg----~~~~d-~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPL---DTG----QKAYD-VEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCc---ccc----hhhhh-hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 355567789999999999998876542 2221 000 00000 12335688899999999999999999988874
Q ss_pred --HhCCCCHHHHHHHHHH----HHHcCChHHHHHHHHHHH
Q psy6102 354 --LMEPNNVKALFRRGRA----QVSMNNFEQGLQDYEQAL 387 (426)
Q Consensus 354 --~ldp~~~kal~~lg~a----~~~lg~~~~Al~~l~kAl 387 (426)
.-+..|.......-.| +-..++|-+|...|.+..
T Consensus 172 il~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 172 ILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344665554444444 344566666666555443
No 487
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=38.59 E-value=1.1e+02 Score=23.21 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=6.7
Q ss_pred cCChHHHHHHHHHHH
Q psy6102 373 MNNFEQGLQDYEQAL 387 (426)
Q Consensus 373 lg~~~~Al~~l~kAl 387 (426)
.|+|++|+..|..|+
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (75)
T cd02678 19 AGNYEEALRLYQHAL 33 (75)
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 488
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=38.17 E-value=92 Score=32.48 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q psy6102 298 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377 (426)
Q Consensus 298 ~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~ 377 (426)
.|++++.+ -+..+.+|+.........++-+.|+....+++...|. ..+.++.+|....+-+
T Consensus 290 ~~~q~~~y----------------~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e 350 (660)
T COG5107 290 IHNQILDY----------------FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEE 350 (660)
T ss_pred HHHHHHHH----------------hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHH
Confidence 47788887 6777889999999999999999999999988888887 7788888888888877
Q ss_pred HHHHHHHHHHH
Q psy6102 378 QGLQDYEQALD 388 (426)
Q Consensus 378 ~Al~~l~kAl~ 388 (426)
+-..+|+++.+
T Consensus 351 ~v~~~fdk~~q 361 (660)
T COG5107 351 AVYGCFDKCTQ 361 (660)
T ss_pred HHhhhHHHHHH
Confidence 77777776654
No 489
>KOG0276|consensus
Probab=37.61 E-value=1.9e+02 Score=31.30 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=47.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH
Q psy6102 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL--------PNDQQILKEIAFVRK 405 (426)
Q Consensus 334 ~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~--------P~n~~a~~~l~~i~~ 405 (426)
.+.+++|+++.|.+.+ .+.++..-|-.+|.+.+..+++..|.+||.+|..+. -.|.+.+..++..-+
T Consensus 645 elal~lgrl~iA~~la-----~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLA-----VEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHH-----HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 4556788888777643 344677788889999999999999999999886542 344454444444444
Q ss_pred HHh
Q psy6102 406 QMR 408 (426)
Q Consensus 406 ~l~ 408 (426)
..+
T Consensus 720 ~~g 722 (794)
T KOG0276|consen 720 KQG 722 (794)
T ss_pred hhc
Confidence 433
No 490
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.44 E-value=3.3e+02 Score=25.14 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=66.6
Q ss_pred cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348 (426)
Q Consensus 269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~ 348 (426)
...+......+...+......|++++|...+++|.+.+..... .-...+.+| .-|.|--.+..|.+|...
T Consensus 22 ~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~---------~l~~~pel~-~ag~~~~a~QEyvEA~~l 91 (204)
T COG2178 22 ALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKR---------LLAGFPELY-FAGFVTTALQEYVEATLL 91 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---------HHhhhHHHH-HHHhhcchHHHHHHHHHH
Confidence 3444455666777788888899999999999999988644331 112223333 345566667788888877
Q ss_pred HHHHHHhCCCCHH------H------------HHHHHHHHHHcCChHHHHHHHHHH
Q psy6102 349 CDDILLMEPNNVK------A------------LFRRGRAQVSMNNFEQGLQDYEQA 386 (426)
Q Consensus 349 ~~~AL~ldp~~~k------a------------l~~lg~a~~~lg~~~~Al~~l~kA 386 (426)
+.-.-.-.-..++ + +.+...-....|+++.|...++-.
T Consensus 92 ~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 92 YSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred HHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7554433211111 1 233344466779999998766533
No 491
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=37.11 E-value=2e+02 Score=22.43 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414 (426)
Q Consensus 374 g~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~ 414 (426)
++...++..-.++++.+|+|+.++..+........-...++
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQ 61 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQ 61 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666777888777766666555444444333
No 492
>KOG0739|consensus
Probab=36.07 E-value=1.3e+02 Score=29.95 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHH
Q psy6102 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY 305 (426)
Q Consensus 275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~ 305 (426)
.+..+...+...=..++|.+|+.+|+.|+++
T Consensus 9 kaI~lv~kA~~eD~a~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 9 KAIDLVKKAIDEDNAKNYEEALRLYQNALEY 39 (439)
T ss_pred HHHHHHHHHhhhcchhchHHHHHHHHHHHHH
Confidence 4444555555556678888888888888886
No 493
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=64 Score=31.43 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHHHH------HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCC------hHHHHHHHHHH
Q psy6102 322 RSYYTAALLNMAAVQ------LKFKAYKRAINLCDDILLMEPNNVKALFRRGR---AQVSMNN------FEQGLQDYEQA 386 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~------~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~---a~~~lg~------~~~Al~~l~kA 386 (426)
++.+...|..|-.|. .....+.+..++-..+|.-|+.|..||..+-. ..+..|+ +++-+++.-.+
T Consensus 140 DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~ 219 (328)
T COG5536 140 DSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDK 219 (328)
T ss_pred cccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhh
Confidence 888888887777766 66667888899999999999999999988833 2333343 56677888888
Q ss_pred HHhCCCcHHHHHHHHHHHHH
Q psy6102 387 LDLLPNDQQILKEIAFVRKQ 406 (426)
Q Consensus 387 l~l~P~n~~a~~~l~~i~~~ 406 (426)
+..+|+|..++..+..+...
T Consensus 220 if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 220 IFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred hhcCccccchhhHHHHHhcc
Confidence 88999999999888777654
No 494
>PRK11619 lytic murein transglycosylase; Provisional
Probab=35.02 E-value=1.9e+02 Score=31.74 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~ 388 (426)
+...+-.+....++.++++.+...+...-.-........|.+|.++..+|+.++|...|+++..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344444455666889998877777664333346788999999999889999999999998744
No 495
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.91 E-value=1.6e+02 Score=26.44 Aligned_cols=33 Identities=9% Similarity=-0.083 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357 (426)
Q Consensus 325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp 357 (426)
++.++.+++.++...|+.++|.....++..+-|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999999999999999
No 496
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=34.07 E-value=65 Score=18.79 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=14.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 329 LLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 329 ~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
|..+-.+|.+.|++++|.+.+++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4445556666666666666665544
No 497
>KOG0890|consensus
Probab=34.03 E-value=3.1e+02 Score=34.50 Aligned_cols=110 Identities=19% Similarity=0.177 Sum_probs=78.7
Q ss_pred hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353 (426)
Q Consensus 274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL 353 (426)
..++.|.+.|...-..|.++.|-.+.-+|.+. . -+.++..+|..+.+.|+-..|+..+++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------------r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKES----------------R--LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------------c--cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 35778889999999999999999888888765 2 57789999999999999999999999999
Q ss_pred HhC-CC----------CH------HHHHHHHHHHHHcCCh--HHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102 354 LME-PN----------NV------KALFRRGRAQVSMNNF--EQGLQDYEQALDLLPNDQQILKEIA 401 (426)
Q Consensus 354 ~ld-p~----------~~------kal~~lg~a~~~lg~~--~~Al~~l~kAl~l~P~n~~a~~~l~ 401 (426)
.++ |+ .. ++.+-.+.=....+++ .+-+..|+.|.++.|....-...++
T Consensus 1730 ~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1730 SKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 664 32 11 1222232222233443 3456789999999996544333333
No 498
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.99 E-value=4.9e+02 Score=28.02 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHH
Q psy6102 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL------LPNDQQILKEIAFVRK 405 (426)
Q Consensus 356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l------~P~n~~a~~~l~~i~~ 405 (426)
+..+.-.|..+|-.|++.++|.+|+..|-.|-.. .-+|.++.+.+-.+..
T Consensus 314 ~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAn 369 (618)
T PF05053_consen 314 NNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIAN 369 (618)
T ss_dssp TT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHH
T ss_pred cCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHH
Confidence 3556777888888888888888888888777542 2345666655554433
No 499
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.83 E-value=2.2e+02 Score=24.18 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=41.1
Q ss_pred CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQ 385 (426)
Q Consensus 322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp--~~~kal~~lg~a~~~lg~~~~Al~~l~k 385 (426)
+|....+|...+... .+ +.+.|.......- ..+..|-.-|..+...|++.+|.+.|+.
T Consensus 65 D~RyLkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 788888888888653 33 4555655554443 4455555667778999999999998864
No 500
>KOG3807|consensus
Probab=33.79 E-value=5.1e+02 Score=26.12 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccc-------chhhhhhhcCcchHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q psy6102 291 RMHDAQRKYKKAVRYIKWYNQS-------QSKTQQKHFRSYYTA--ALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-- 359 (426)
Q Consensus 291 ~y~~Ai~~y~kAl~~~~~~~~~-------~~~~~~~~~~p~~~~--~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~-- 359 (426)
-..+|.+.+++|++..+..-.. ....++..-...++. +-..+|.|..++|+..+|++.+....+-.|-.
T Consensus 231 Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~ 310 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTM 310 (556)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHH
Confidence 4567778888888754321111 111222222333444 44567999999999999999999888777722
Q ss_pred HHHHHHHHHHHHHcCChHHHH
Q psy6102 360 VKALFRRGRAQVSMNNFEQGL 380 (426)
Q Consensus 360 ~kal~~lg~a~~~lg~~~~Al 380 (426)
...+-++-.++..+.-|....
T Consensus 311 lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 311 LNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 223334444555554444333
Done!