RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6102
(426 letters)
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 175 bits (445), Expect = 2e-53
Identities = 64/94 (68%), Positives = 72/94 (76%), Gaps = 2/94 (2%)
Query: 12 IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRII 71
VF D++IG E GR+V+ELF +VPKTAENFRALCTGE KGK GK + GS FHR+I
Sbjct: 2 KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGE--KGKGGKPFGYKGSTFHRVI 59
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
P FMIQGGD T NGTGG+SIYG F DENFKLK
Sbjct: 60 PDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLK 93
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 151 bits (382), Expect = 6e-44
Identities = 65/97 (67%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
VF D+SI GR+V ELF + PKTAENFRALC G+ G GK LH+ GS FHRIIP
Sbjct: 18 VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGD-KVGSSGKNLHYKGSIFHRIIP 76
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
QFM QGGDITN NGTGGESIYG F DENFKLK P
Sbjct: 77 QFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQP 113
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 121 bits (304), Expect = 2e-32
Identities = 53/96 (55%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N +VF DV+IG GR+ +ELF I PKTAENFR CTGE+ K G + G FHR
Sbjct: 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKA--GLPQGYKGCQFHR 75
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+I FMIQGGD +GTG SIYG FEDENF K
Sbjct: 76 VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAK 111
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl
cis- trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the immunosuppressive
drug cyclosporin (CsA). Immunosuppression in
vertebrates is believed to be the result of the
cyclophilin A-cyclosporin protein drug complex binding
to and inhibiting the protein-phosphatase calcineurin.
PPIase is an enzyme which accelerates protein folding by
catalyzing the cis-trans isomerization of the peptide
bonds preceding proline residues. Cyclophilins are a
diverse family in terms of function and have been
implicated in protein folding processes which depend on
catalytic /chaperone-like activities. This group
contains human cyclophilin 40, a co-chaperone of the
hsp90 chaperone system; human cyclophilin A, a
chaperone in the HIV-1 infectious process and; human
cyclophilin H, a component of the U4/U6 snRNP, whose
isomerization or chaperoning activities may play a role
in RNA splicing. .
Length = 146
Score = 96.2 bits (240), Expect = 8e-24
Identities = 39/87 (44%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
GR+VIEL+ PKT ENF +L G + + G+ FHR+IP FMIQGGD T
Sbjct: 6 KGRIVIELYGDEAPKTVENFLSLARGGF----------YDGTTFHRVIPGFMIQGGDPTG 55
Query: 84 FNGTGGESIYGPCFEDENFKLKGIYPK 110
G G S G F DENF LK + +
Sbjct: 56 TGGGG--SGPGYKFPDENFPLKYHHRR 80
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 91.9 bits (229), Expect = 4e-22
Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 19 IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQG 78
I E G + IEL+ PKT NF L + + G+ FHR+IP FMIQG
Sbjct: 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEGF----------YDGTIFHRVIPGFMIQG 52
Query: 79 GDITNFNGTGGESIYGPCFEDENFKLKG 106
GD T +GTGG F+DENF L G
Sbjct: 53 GDPTGGDGTGGPGPP---FKDENFALNG 77
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 81.5 bits (202), Expect = 1e-18
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQ 73
FLD++ GR+VIELF PKT ENF +LC K + G+ FHR+IP
Sbjct: 1 FLDITTNL---GRIVIELFGDEAPKTVENFLSLC----------KKGFYDGTIFHRVIPG 47
Query: 74 FMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FMIQGGD T G SI DE
Sbjct: 48 FMIQGGDPTGPGTGGKRSI-----PDEFVSKL 74
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 80.6 bits (199), Expect = 4e-18
Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G + IELF PK ENF ALC Y + G FHR I FM+Q GD T
Sbjct: 9 LGDIKIELFCDDCPKACENFLALCASGY----------YNGCIFHRNIKGFMVQTGDPTG 58
Query: 84 FNGTGGESIYGPCFEDE 100
G GGESI+G FEDE
Sbjct: 59 -TGKGGESIWGKKFEDE 74
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 74.9 bits (184), Expect = 4e-16
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 17/95 (17%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
E +G + +EL+ + PKT +NF L Y + G+ FHR+I FMIQGGD
Sbjct: 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGY----------YNGTIFHRLIKDFMIQGGD 52
Query: 81 ITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPG 115
T G GG SIYG FEDE I+P+ K+ G
Sbjct: 53 PTG-TGRGGASIYGKKFEDE------IHPELKHTG 80
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity, is
cyclosporin insensitive and shows an altered substrate
preference favoring, hydrophobic, acidic or amide amino
acids. Most members of this subfamily have a glutamate
residue in the active site at the position equivalent to
a tryptophan (W121 in Human cyclophilin A), which has
been shown to be important for cyclophilin binding.
Length = 171
Score = 72.4 bits (178), Expect = 4e-15
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
G + IEL+ PK NF LC Y + + FHR++P F+IQGGD T
Sbjct: 14 AGDIDIELWSKEAPKACRNFIQLCLEGY----------YDNTIFHRVVPGFIIQGGDPTG 63
Query: 84 FNGTGGESIYGPCFEDE 100
GTGGESIYG F+DE
Sbjct: 64 -TGTGGESIYGEPFKDE 79
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity and
lack a residue important for cyclophilin binding. Human
hCyP-60 has been shown to physically interact with the
proteinase inhibitor peptide eglin c and; C. elegans
MOG-6 to physically interact with MEP-1, a nuclear zinc
finger protein. MOG-6 has been shown to function in
germline sex determination.
Length = 159
Score = 71.3 bits (175), Expect = 8e-15
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
G + +EL PK ENF LC Y + G+ FHR I FMIQGGD T
Sbjct: 9 GDLNLELHCDKAPKACENFIKLCKKGY----------YDGTIFHRSIRNFMIQGGDPTG- 57
Query: 85 NGTGGESIYGPCFEDE 100
G GGESI+G F+DE
Sbjct: 58 TGRGGESIWGKPFKDE 73
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 69.8 bits (171), Expect = 2e-14
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
G + I LF PKT ENF Y + + FHR+I FMIQ GD T
Sbjct: 7 GDIHIRLFPEEAPKTVENFTTHARNGY----------YNNTIFHRVIKGFMIQTGDPTG- 55
Query: 85 NGTGGESIYGPCFEDE 100
+GTGGESI+G FEDE
Sbjct: 56 DGTGGESIWGKEFEDE 71
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 63.7 bits (155), Expect = 2e-11
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYG-KGKLGKALHFTGSHFHRII 71
FLD+SIG+ GR+V ELF+ +VP+T ENFRAL TG G G L + + H +
Sbjct: 55 AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVD 114
Query: 72 PQF-MIQGGDITNFNGTGGESIYGPCFEDENFK 103
+I G++ +FN S G DE ++
Sbjct: 115 RNNNIIVLGELDSFN----VSSTGTPIADEGYR 143
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 58.9 bits (143), Expect = 4e-11
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343
L ++ Y +A+ Y Y ++ A N+AA K Y+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEY---YEKALEL------DPDNADAYYNLAAAYYKLGKYE 51
Query: 344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
A+ + L ++P+N KA + G A + +E+ L+ YE+AL+L PN
Sbjct: 52 EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 52.4 bits (126), Expect = 1e-08
Identities = 21/88 (23%), Positives = 43/88 (48%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
ALLN+ + K Y A+ + L ++P+N A + A + +E+ L+DYE+AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 388 DLLPNDQQILKEIAFVRKQMRHHLNLEK 415
+L P++ + + ++ + +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALE 89
Score = 33.1 bits (76), Expect = 0.047
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
+AL G + ++++ L+ YE+AL+L P++ +A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLA 41
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a
tyrptophan has been shown to be important for
cyclophilin binding.
Length = 155
Score = 52.1 bits (125), Expect = 3e-08
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDIT 82
G +V+EL+ P T ENF A KG + + FHR+I F+IQGG T
Sbjct: 7 GDIVVELYDDKAPITVENFLAYVR----KG------FYDNTIFHRVISGFVIQGGGFT 54
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 48.8 bits (117), Expect = 7e-08
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQA 386
AL N+ K Y AI + L ++P+N +A + A + + ++E+ L+D E+A
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64
Query: 387 LDLLP 391
L+L P
Sbjct: 65 LELDP 69
Score = 35.4 bits (82), Expect = 0.005
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
+N +AL G A + ++++ ++ YE+AL+L P++ + +A ++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKD 53
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 51.6 bits (124), Expect = 5e-07
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
G Y L ++ AQ+ Y Q+ + + A L +A + L +
Sbjct: 132 GLAYLGLGQLELAQKSY----------EQALAIDPR------SLYAKLGLAQLALAENRF 175
Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
A L D++L +P NV AL +G +S+ N E L Y +A+ L PN+ +L
Sbjct: 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230
Score = 40.5 bits (95), Expect = 0.002
Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 9/145 (6%)
Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316
+ + + L L I N+ L + ++++A + +
Sbjct: 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA--------EKHADA 252
Query: 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
K + A L A V + K Y+ A D L P + AL G ++ + N
Sbjct: 253 LLKKAPNSPLAHYLK-ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNL 311
Query: 377 EQGLQDYEQALDLLPNDQQILKEIA 401
EQ Q Q L PN Q + +A
Sbjct: 312 EQAYQYLNQILKYAPNSHQARRLLA 336
Score = 40.1 bits (94), Expect = 0.002
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
L +A L K+A+ + ++ P++ +A GRAQ++ + + + +++ L
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629
Query: 389 LLPNDQQILKEIAFVRKQMR 408
L P+ L +A M+
Sbjct: 630 LQPDSALALLLLADAYAVMK 649
Score = 34.3 bits (79), Expect = 0.12
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 327 AALLNMAAVQ-LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
A L++ L +++A ++P N A + G +++S + + + D E
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422
Query: 386 ALDLLPN 392
A L P
Sbjct: 423 AAQLDPE 429
Score = 34.3 bits (79), Expect = 0.13
Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 22/172 (12%)
Query: 227 KQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEY 286
K + L K+ K G E + D P + ++ +S N
Sbjct: 690 KIAKSLQKQHPK---------AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN-- 738
Query: 287 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI 346
++H A +K +A + L K Y +AI
Sbjct: 739 --AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV------LRTALAELYLAQKDYDKAI 790
Query: 347 NLCDDILLMEPNNVKALFRRGRAQVSMNNFE-QGLQDYEQALDLLPNDQQIL 397
++ P+N L A + + + + L+ E+AL L PN IL
Sbjct: 791 KHYQTVVKKAPDNAVVL--NNLAWLYLELKDPRALEYAERALKLAPNIPAIL 840
Score = 33.1 bits (76), Expect = 0.28
Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+S L + + Y KA+ +K ++ + T A + +A + L K
Sbjct: 633 DSALALLLLADAYAVMKNYAKAITSLK-----RALELKPDN----TEAQIGLAQLLLAAK 683
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
+ A + + P G + ++ +Q Y +AL P+ Q +K
Sbjct: 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK 741
Score = 31.6 bits (72), Expect = 0.99
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 378
K+ + + A L +A++QL+ AI L ++P++ AL G A +++ +FE+
Sbjct: 323 KYAPNSHQARRL-LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
Query: 379 GLQDYEQALDLLPND 393
+ +A +L P +
Sbjct: 382 AAEYLAKATELDPEN 396
Score = 31.6 bits (72), Expect = 1.00
Identities = 14/65 (21%), Positives = 24/65 (36%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
ALL + L + A+ + + PNN+ L + FE+ + + L
Sbjct: 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 388 DLLPN 392
PN
Sbjct: 255 KKAPN 259
Score = 30.1 bits (68), Expect = 2.9
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354
AQ+ Y KA+++ + + L N+A + L+ K RA+ + L
Sbjct: 782 AQKDYDKAIKHYQTVVKKAPD---------NAVVLNNLAWLYLELKD-PRALEYAERALK 831
Query: 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
+ PN L G V ++ L +A+++ P I
Sbjct: 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
Score = 29.7 bits (67), Expect = 3.3
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
A L + QL +A++ +L ++P++ AL A M N+ + + ++A
Sbjct: 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661
Query: 387 LDLLPN 392
L+L P+
Sbjct: 662 LELKPD 667
Score = 29.7 bits (67), Expect = 4.1
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
YK AI + L +PN+ +A F G+ +++ ++ ++ +AL L Q+L +A
Sbjct: 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLA 97
Query: 402 F 402
Sbjct: 98 R 98
Score = 29.3 bits (66), Expect = 5.6
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 14/155 (9%)
Query: 256 VSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWYNQSQS 314
Y + L + + +S + L R A KAV + K
Sbjct: 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL-----L 628
Query: 315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374
Q ALL +A K Y +AI L ++P+N +A + ++
Sbjct: 629 ALQPDSA-----LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683
Query: 375 NFEQGL---QDYEQALDLLPNDQQILKEIAFVRKQ 406
E + ++ ++ ++ +K
Sbjct: 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 46.2 bits (110), Expect = 3e-06
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 160 TVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAK 195
TV FLN F+ CE L L+++E LS+LEAK
Sbjct: 8 TVQFLNRFSAVCESKLVEAERSLQQLETTLSLLEAK 43
>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat.
Length = 73
Score = 43.0 bits (102), Expect = 1e-05
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
+ ++RA+ + + +LL+ P++ RG + F+ L D E L+L P+ +
Sbjct: 9 EDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAPDAER- 67
Query: 400 IAFVRKQMR 408
+R+Q+
Sbjct: 68 ---IREQLA 73
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 41.9 bits (99), Expect = 2e-05
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
L +A L+ Y A+ + L P +AL G A + + AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 390 LPND 393
P+D
Sbjct: 61 DPDD 64
Score = 29.6 bits (67), Expect = 0.42
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 364 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
RA + ++++ L E AL P + L + +
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRL 47
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring
with a C-terminal RNA recognition motif domain (RRM).
This subfamily of the cyclophilin domain family
contains a number of eukaryotic cyclophilins having the
RRM domain including the nuclear proteins: human
hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis
elegans CeCyP-44 and Paramecium tetrurelia Kin241. The
Kin241 protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 44.3 bits (105), Expect = 2e-05
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
E +G +VI+LF P NF LC +Y + F+ + F+ Q GD
Sbjct: 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKY----------YNFCLFYNVQKDFIAQTGD 52
Query: 81 ITNFNGTGGESIYGP 95
T G GGESIY
Sbjct: 53 PTG-TGAGGESIYSQ 66
>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 287
Score = 42.4 bits (100), Expect = 3e-04
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
Y L R DA Y+ A+R + + AL A Q+ K A
Sbjct: 166 YMALGRASDALLAYRNALRLAG--DNPEILLG-------LAEALYYQAGQQMTAK----A 212
Query: 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----QQILKEIA 401
L L ++P N++AL A ++ + ++ LDLLP D I + IA
Sbjct: 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272
Query: 402 FVRKQMR 408
Q
Sbjct: 273 RALAQRS 279
Score = 31.2 bits (71), Expect = 0.86
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
P + + GRA +++ L Y AL L ++ +IL
Sbjct: 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEIL 193
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 37.4 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
KAL+ G A + + +++ L+ YE+AL+L PN+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+AL+ G A + + ++++ L+ YE+AL+L PN+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B
(rotamase B); Provisional.
Length = 164
Score = 39.1 bits (91), Expect = 0.001
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG 79
G +VI+ F P+T +NF C + + + FHR+I FMIQGG
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF----------YNNTIFHRVINGFMIQGG 53
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 39.8 bits (91), Expect = 0.002
Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 328
+ ++ + L + +A +Y++A+ ++ K A
Sbjct: 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL--------KLNPDDDAEA 204
Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
LLN+ + LK Y+ A+ + L ++P+N +AL+ + + +E+ L+ E+AL+
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264
Query: 389 LLPNDQQILKEIAFVRKQMRHHLNLEK 415
L P+ + + + + L
Sbjct: 265 LDPDLYNLGLALLLLLAEALELLEKAD 291
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 34.0 bits (79), Expect = 0.005
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+AL+ G A + ++E+ L+ YE+AL+L PN+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 34.7 bits (80), Expect = 0.011
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMN 374
AAL N+A V + Y A+ L + L + P +AL R +++
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 375 NFEQGLQDYEQALDLLPN 392
++++ L+ E+AL L
Sbjct: 61 DYDEALEYLEKALALREA 78
Score = 26.6 bits (59), Expect = 7.1
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLN 331
D+ + N +L +A +KA+ + TA AL N
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELAREL----------GEDHPETARALNN 51
Query: 332 MAAVQLKFKAYKRAINL 348
+A + L Y A+
Sbjct: 52 LARLYLALGDYDEALEY 68
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A
(rotamase A); Provisional.
Length = 190
Score = 36.0 bits (83), Expect = 0.019
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDIT 82
G + +EL P + +NF + + + FHR+IP FMIQGG T
Sbjct: 37 AGNIELELNSQKAPVSVKNFVDYVNSGF----------YNNTTFHRVIPGFMIQGGGFT 85
>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat.
Length = 44
Score = 31.4 bits (71), Expect = 0.057
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
AL RA +++ + ++ L +AL L P+D + L +A
Sbjct: 1 PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLLA 42
Score = 30.2 bits (68), Expect = 0.16
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 369
AALL +A L A+ L L ++P++ +AL R
Sbjct: 2 AALLALARALLALGDLDEALALLRRALALDPDDPEALLLLARL 44
>gnl|CDD|225523 COG2976, COG2976, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 207
Score = 33.9 bits (78), Expect = 0.097
Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 261 AENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQR-----KYKKAVRYIKWYNQSQSK 315
+ KP + E ++ N Y L + A+ KA +K + ++
Sbjct: 64 VQAKKPKSIAAAEKFVQ--ANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ---ALAQ 118
Query: 316 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 375
T+ ++ ++ A L +A VQL+ K A+ D I + A RG ++ +
Sbjct: 119 TKDENLKA---LAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAE-LRGDILLAKGD 174
Query: 376 FEQGLQDYEQALDLLPND--QQILK 398
++ YE+AL+ + ++IL+
Sbjct: 175 KQEARAAYEKALESDASPAAREILQ 199
>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response
chaperone LcrH/SycD. Genes in this family are found in
type III secretion operons. LcrH, from Yersinia is
believed to have a regulatory function in the
low-calcium response of the secretion system. The same
protein is also known as SycD (SYC = Specific Yop
Chaperone) for its chaperone role. In Pseudomonas, where
the homolog is known as PcrH, the chaperone role has
been demonstrated and the regulatory role appears to be
absent. ScyD/LcrH contains three central
tetratricopeptide-like repeats that are predicted to
fold into an all-alpha-helical array.
Length = 135
Score = 31.5 bits (72), Expect = 0.30
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
+ S Y L AA K Y+ AI+ ++P++ + F +++ E
Sbjct: 48 PYNSRYWLGL---AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESA 104
Query: 380 LQDYEQALDLLPNDQQ--ILKEIA 401
L+ + A+++ + + LKE A
Sbjct: 105 LKALDLAIEICGENPEYSELKERA 128
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 32.3 bits (73), Expect = 0.53
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
T + + A++ L+ +A D L + + + R + F Q +DY++
Sbjct: 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
Query: 386 ALDLLPN 392
++DL P+
Sbjct: 425 SIDLDPD 431
Score = 31.9 bits (72), Expect = 0.71
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K GN+ ++ + + KA++ + K YY+ N AA
Sbjct: 130 LKEKGNKAYR-------NKDFNKAIKLYSK------AIECKPDPVYYS----NRAACHNA 172
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 383
+++ + L ++P+ KAL RR A + + L D
Sbjct: 173 LGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 32.0 bits (73), Expect = 0.55
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 26/127 (20%)
Query: 286 YFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ N+ +A + KKA+ + N +Q ALL
Sbjct: 350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQ--------------ALLKG-------G 388
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
+ AI + + L +P + +A + N + L + L +Q + +
Sbjct: 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFL 448
Query: 401 AFVRKQM 407
+Q+
Sbjct: 449 MRASQQV 455
Score = 31.2 bits (71), Expect = 1.1
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
AA A Y A+ L ++ +P+N L G + N ++ ++ +
Sbjct: 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLK 364
Query: 385 QALDLLPN 392
+AL L PN
Sbjct: 365 KALALDPN 372
>gnl|CDD|221956 pfam13174, TPR_6, Tetratricopeptide repeat.
Length = 33
Score = 28.2 bits (64), Expect = 0.70
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
AL++ A + + + ++ + E+ L P+
Sbjct: 1 DALYKLALAYLKLGDTDEAKEALERLLKRYPDS 33
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 27.8 bits (63), Expect = 0.99
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
+A + G+ + + ++E+ + YE+AL+L PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33
>gnl|CDD|219095 pfam06585, JHBP, Haemolymph juvenile hormone binding protein
(JHBP). This family consists of several insect-specific
haemolymph juvenile hormone binding proteins (JHBP).
Juvenile hormone regulates embryogenesis, maintains the
status quo of larval development and stimulates
reproductive maturation in the adult insect. JH is
transported from the sites of its synthesis to target
tissues by a haemolymph carrier called juvenile
hormone-binding protein (JHBP). JHBP protects the JH
molecules from hydrolysis by non-specific esterases
present in the insect haemolymph. The crystal structure
of the JHBP from Galleria mellonella shows an unusual
fold consisting of a long alpha-helix wrapped in a much
curved antiparallel beta-sheet. The folding pattern for
this structure closely resembles that found in some
tandem-repeat mammalian lipid-binding and bactericidal
permeability-increasing proteins, with a similar
organisation of the major cavity and a disulfide bond
linking the long helix and the beta-sheet. It would
appear that JHBP forms two cavities, only one of which,
the one near the N- and C-termini, binds the hormone;
binding induces a conformational change, of unknown
significance. This family now includes DUF233,
pfam03027.
Length = 246
Score = 30.8 bits (70), Expect = 1.2
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
A +LK + Y+R D ++ +K G + + N G ++ A++ N
Sbjct: 153 ATGKLKGRLYER-----DGKTYLKVTKLKVEIDVGDVKFDLENLFNGNKELGDAMNKFIN 207
Query: 393 D--QQILKEIA-----FVRKQMRHHLN--LEKMTYARMF 422
+ +++L E+ + K LN +K+ Y +F
Sbjct: 208 ENWKELLNELKPAIEEALEKIFVDILNKIFKKVPYDDLF 246
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 30.9 bits (70), Expect = 1.3
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
+ A++L + ++PNN + R +A + + NF + + D +A++L P
Sbjct: 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 30.9 bits (70), Expect = 1.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 206 KRGITEHKK-KLETGRGKEISRKQYRDLVKKKKKKNGIFG-----CVR 247
K + K + + GR K S ++ R++V K+ +K G+ G C R
Sbjct: 37 KITVNSRNKGRRQNGRNKYQSNQRVRNIVNKQLRKQGVTGPKPAICQR 84
>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase,
SPINDLY family [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 30.5 bits (69), Expect = 1.8
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR------GRAQVSMNNFEQGLQDYEQA 386
AA++L + ++ + + P+N + L GR + + E+A
Sbjct: 109 AALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERA 168
Query: 387 LDLLPNDQQILKEIAFVRKQ 406
+DLLP ++L + R++
Sbjct: 169 VDLLPKYPRVLGALMTARQE 188
>gnl|CDD|217299 pfam02949, 7tm_6, 7tm Odorant receptor. This family is composed of
7 transmembrane receptors, that are probably drosophila
odorant receptors.
Length = 313
Score = 30.3 bits (69), Expect = 2.0
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 147 LASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHY 197
+ V Q + S +F +HL+ L ++L ++ D + E + Y
Sbjct: 123 VLGMTVTVLQNIGSDSLFCSFLLFLVLHLRLLQLRLERLGLDPELSEEEEY 173
>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat.
Length = 34
Score = 26.8 bits (60), Expect = 2.4
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 348 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
L + L ++PNN +A + +++ +++ LQ
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC. These domains are found
in the eukaryotic halogen ion (Cl-, Br- and I-) channel
proteins that perform a variety of functions including
cell volume regulation, membrane potential
stabilization, charge compensation necessary for the
acidification of intracellular organelles, signal
transduction and transepithelial transport. They are
also involved in many pathophysiological processes and
are responsible for a number of human diseases. These
proteins belong to the ClC superfamily of chloride ion
channels, which share the unique double-barreled
architecture and voltage-dependent gating mechanism.
The gating is conferred by the permeating anion itself,
acting as the gating charge. Some proteins possess long
C-terminal cytoplasmic regions containing two CBS
(cystathionine beta synthase) domains of putative
regulatory function.
Length = 416
Score = 30.0 bits (68), Expect = 2.4
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 13/59 (22%)
Query: 125 FRMLTFTSMVCLFSLGSGLGLGLASTLV-------------GSYQFSCTVSFLNTFTNN 170
R L ++ C+ ++ SGL LG LV S C V F N
Sbjct: 85 IRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNP 143
>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine
protease. This model describes a rhomboid-like
intramembrane serine protease. Its species distribution
closely matches model TIGR03501, GlyGly-CTERM, which
describes a protein targeting domain analogous to LPXTG
and PEP-CTERM. In a number of species (Ralstonia
eutropha ,R. metallidurans, R. solanacearum,
Marinobacter aquaeolei, etc) with just one GlyGly-CTERM
protein (i.e., a dedicated system), the rhombosortase
and GlyGly-CTERM genes are adjacent.
Length = 154
Score = 29.1 bits (66), Expect = 2.4
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 116 IYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSY 155
+ L + R ++ L SL LGL L + Y
Sbjct: 41 LLWLLFERHLRARRLLLLLLLLSLLISLGLLLFLPSLQWY 80
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 29.3 bits (66), Expect = 3.1
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
+ A+++ + P + +A G A + F++ + Y QAL+L PN+ I +
Sbjct: 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 29.5 bits (67), Expect = 3.1
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 38/101 (37%)
Query: 186 EAD-LSILEAKHYYNQGALEKKRGI----TEHKKKLETGRGKEISRKQYRDLVKKKKKKN 240
E+D L+I A H+Y +K + I TEHK L+T R E
Sbjct: 77 ESDNLAIKGAAHFYQ----KKGKHIITSKTEHKAVLDTCRQLE----------------- 115
Query: 241 GIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIR--TI 279
R+GF EV+Y++ +++ + L ++E +R TI
Sbjct: 116 ------REGF----EVTYLDPQSNGIIDLEKLEAAMRDDTI 146
>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO.
Members of this protein family include YfiO, a
near-essential protein of the outer membrane, part of a
complex involved in protein insertion into the bacterial
outer membrane. Many proteins in this family are
annotated as ComL, based on the involvement of this
protein in natural transformation with exogenous DNA in
Neisseria gonorrhoeae. This protein family shows
sequence similarity to, but is distinct from, the
tol-pal system protein YbgF (TIGR02795) [Protein fate,
Protein and peptide secretion and trafficking].
Length = 235
Score = 29.1 bits (66), Expect = 4.1
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 296 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILL 354
Y +A++Y + + ++ S Y A L++A K Y AI D +
Sbjct: 46 SGDYTEAIKYFE-------ALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98
Query: 355 MEPNNVK---ALFRRGRAQVSMNNFEQ 378
+ PN+ A + RG ++N+ Q
Sbjct: 99 LHPNHPDADYAYYLRG-----LSNYNQ 120
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 27.2 bits (61), Expect = 4.3
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 204 EKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNG 241
EK +G+T +KK R + R +K K+
Sbjct: 14 EKNKGLTRKRKKDRR-----NPRVKKRKKYEKAVKRLK 46
>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 445
Score = 29.1 bits (66), Expect = 5.0
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 18/59 (30%)
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 418
+K L ++ FE G +DY QA L P NLE TY
Sbjct: 113 LKYLLKKQPPLSEQEKFESGYEDYLQA-PLQP-----------------LSDNLESQTY 153
>gnl|CDD|185750 cd09237, V_ScBro1_like, Protein-interacting V-domain of
Saccharomyces cerevisiae Bro1 and related domains. This
family contains the V-shaped (V) domain of Saccharomyces
cerevisiae Bro1, and related domains. It belongs to the
V_Alix_like superfamily which also includes the V-domain
of Saccharomyces cerevisiae Rim20 (also known as PalA),
mammalian Alix (apoptosis-linked gene-2 interacting
protein X), His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23), and related
domains. Bro1 interacts with the ESCRT (Endosomal
Sorting Complexes Required for Transport) system, and
participates in endosomal trafficking. The mammalian
Alix V-domain (belonging to a different family) contains
a binding site, partially conserved in the superfamily,
for the retroviral late assembly (L) domain YPXnL motif.
The Alix V-domain is also a dimerization domain. Bro1
also has an N-terminal Bro1-like domain, which binds
Snf7, a component of the ESCRT-III complex, and a
C-terminal proline-rich region (PRR). The C-terminal
portion (V-domain and PRR) of S. cerevisiae Bro1
interacts with Doa4, a ubiquitin thiolesterase needed to
remove ubiquitin from MVB cargoes. It interacts with a
YPxL motif in the Doa4s catalytic domain to stimulate
its deubiquitination activity.
Length = 356
Score = 28.8 bits (65), Expect = 5.1
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAAL 329
+ +I +K ++ FKL + + Q K K Q K + + Y +
Sbjct: 271 FKQSSLINELKIELDKLFKLPGVKEKQSKEKSK--------QKLRKEFFEKLKKAYNSFK 322
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and
reduced affinity for cyclosporin A. Spinach TLP40 has
been shown to have a dual function as a folding
catalyst and regulator of dephosphorylation.
Length = 176
Score = 28.2 bits (63), Expect = 5.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
G + I L + P TA NF L +G + G FHR+ F++Q GD
Sbjct: 7 GTITIVLDGYNAPVTAGNFVDLVE----RG------FYDGMEFHRVEGGFVVQTGD 52
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 29.3 bits (66), Expect = 5.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
Y +AI + L ++P+ R RAQ M E Q ++Q L+ LP ++ +++
Sbjct: 1208 YLQAIEKRLEKLAVDPH-------RDRAQ--MLKVESVQQAWQQWLNKLPPARREDEDVK 1258
Query: 402 FVR 404
+R
Sbjct: 1259 EIR 1261
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 28.8 bits (65), Expect = 5.7
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 12/35 (34%)
Query: 137 FSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC 171
FSLG G G+ LA + SY N F NNC
Sbjct: 260 FSLGPGFGVLLA---LSSY---------NKFHNNC 282
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 6.4
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 175 LQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVK 234
L+ L KL+++E L LE +H + A KK + KK+L TG E K+ +L K
Sbjct: 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL-TGLTPEKLEKELEELEK 398
Query: 235 KKKK 238
K++
Sbjct: 399 AKEE 402
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms].
Length = 363
Score = 28.5 bits (64), Expect = 7.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 114 PGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQ 156
PG+ P L +F MV G+GLGL LA L+ +
Sbjct: 297 PGVPPDLQDHLF-----YPMVSGREGGTGLGLALAQNLIDQHG 334
>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism].
Length = 389
Score = 28.5 bits (64), Expect = 7.4
Identities = 24/138 (17%), Positives = 56/138 (40%), Gaps = 19/138 (13%)
Query: 292 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 351
++ A R+++KA+ + + +T + +Y +A L RA L
Sbjct: 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC----ELAQQALASSDVDRARELLKK 205
Query: 352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL----DLLPNDQQILKE-------- 399
L + V+A GR +++ ++++ ++ E+ L + L ++L E
Sbjct: 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265
Query: 400 ---IAFVRKQMRHHLNLE 414
+ F+R+ M + +
Sbjct: 266 AEGLNFLRRAMETNTGAD 283
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional.
Length = 313
Score = 28.1 bits (62), Expect = 9.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 379 GLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422
GL D + LDL ++Q +A + ++ ++EK+ + RMF
Sbjct: 15 GLADAGELLDLAESEQDEDTALAVIADLDKYQAHVEKLEFQRMF 58
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 28.1 bits (63), Expect = 9.9
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRR---GRAQVSMNNFEQG--------LQDYEQALD 388
K+ +A +L ++IL EP+ A + + S ++ L + +
Sbjct: 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415
Query: 389 L--LPNDQQILKEIAFVRKQM---RHHLN 412
L LP +IL A V+ + +N
Sbjct: 416 LNVLPRIYEILAVQALVKGKTDEAYQAIN 444
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.400
Gapped
Lambda K H
0.267 0.0867 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,689,863
Number of extensions: 2138228
Number of successful extensions: 2272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2232
Number of HSP's successfully gapped: 106
Length of query: 426
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 326
Effective length of database: 6,502,202
Effective search space: 2119717852
Effective search space used: 2119717852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.6 bits)