RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6102
(426 letters)
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 194 bits (496), Expect = 9e-61
Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGS 65
G+ D+ I E VGR++ +LF I PKT +NF LC+GE G GK GK L + GS
Sbjct: 16 PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75
Query: 66 HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FHR++ FMIQGGD + NG GGESIYG F+DENF LK
Sbjct: 76 TFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILK 115
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 193 bits (494), Expect = 1e-60
Identities = 56/100 (56%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
K+ VFLDV+I GR+V+EL+ I P+T NF LCTG G GK+ GK LH+ GS
Sbjct: 3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 66 HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FHR+I FMIQGGD T +GTGGESIYG F+DE F +K
Sbjct: 63 TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMK 102
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 193 bits (494), Expect = 1e-60
Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
K F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+
Sbjct: 6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSC 65
Query: 66 HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FHR++ FM+QGGD + NG GGESIYG FEDE+F +K
Sbjct: 66 LFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 192 bits (490), Expect = 6e-60
Identities = 63/103 (61%), Positives = 76/103 (73%)
Query: 3 KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHF 62
+++ +GN +V+ D+SIG+ GR+ +ELF VP TAENFRALCTGE G G+ GK L +
Sbjct: 12 ENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCY 71
Query: 63 TGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
TGS FHRIIPQFMIQGGD T +GTGGESIYG F DENF
Sbjct: 72 TGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYT 114
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 190 bits (485), Expect = 3e-59
Identities = 59/105 (56%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
M + N +VF DVSIG ++VGRM IELF +VPKTAENFR CTGE K G +
Sbjct: 1 MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPI 58
Query: 61 HFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+ GS FHR+I FMIQGGD N +GTG SIY F DENFKL+
Sbjct: 59 GYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLR 103
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 189 bits (482), Expect = 7e-59
Identities = 65/96 (67%), Positives = 72/96 (75%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
VF D++IG + GR+V+EL+ +VPKTA NFRALCTGE G GK GK LHF GS FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
IIP FMIQGGD T NGTGGESIYG F DENFK K
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEK 98
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 187 bits (477), Expect = 2e-57
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
+ + N +VF+D+++G +G+ ELF++IVPKT+ENFR CTGE +
Sbjct: 50 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGE--YKVNNLPV 107
Query: 61 HFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+ + FHR+I +FMIQGGD N NG+G SIYG F+DENF +K
Sbjct: 108 GYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIK 152
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 183 bits (466), Expect = 2e-56
Identities = 60/96 (62%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
VF D+SI GR++ ELF I P+T ENFRALCTGE G GK LH+ S FHR
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFHR 61
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
IIPQFM QGGDITN NG+GGESIYG F DENF +K
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMK 97
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 185 bits (472), Expect = 5e-55
Identities = 69/100 (69%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
N VF DV IG E+VGR+V+ELF IVPKTAENFRALCTGE G G GK LHF G
Sbjct: 12 NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGC 71
Query: 66 HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FHRII +FMIQGGD +N NGTGGESIYG FEDENF K
Sbjct: 72 PFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111
Score = 167 bits (426), Expect = 3e-48
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 41/225 (18%)
Query: 239 KNGIFGCVRQGFGVAREVSYVEAENDKPLV------------------------------ 268
K+ +FG V +G GVA+ + VE + +KP
Sbjct: 145 KHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPD 204
Query: 269 -----------LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
++++ + +KN GN +FK A +KY K +RY++ +
Sbjct: 205 FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 264
Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
+ + +LN+ A +LK ++ A++ C + L ++P+N KAL+RR + + ++
Sbjct: 265 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324
Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422
Q L D ++A ++ P D+ I E+ V+++++ + EK YA+MF
Sbjct: 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 176 bits (449), Expect = 3e-53
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 13/112 (11%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG----------KL 56
N V++D+ + E +GR+ I+LF+ P ENF L G+ +
Sbjct: 11 SGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNR 70
Query: 57 GKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED---ENFKLK 105
+ G FH ++ I GDI N NG+ ++Y ++
Sbjct: 71 HINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYP 122
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 173 bits (442), Expect = 6e-53
Identities = 55/105 (52%), Positives = 66/105 (62%), Gaps = 7/105 (6%)
Query: 1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
M K VF D+ IG GR+V+EL IVP+TAENFRALCTGE G G
Sbjct: 1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG------ 54
Query: 61 HFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+ FHR+IPQFM QGGD +GTGG+SIYG F+DENF+L+
Sbjct: 55 -YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLR 98
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 173 bits (442), Expect = 6e-53
Identities = 51/96 (53%), Positives = 60/96 (62%), Gaps = 7/96 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
V+ DV I E +GR+ I LF P T ENFR LCTGE+G G + S FHR
Sbjct: 11 TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHR 63
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+I FMIQGGD TNF+GTGG+SIYG F DEN +K
Sbjct: 64 VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK 99
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 174 bits (443), Expect = 7e-53
Identities = 52/96 (54%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
V+ D+ IG+E VGR++ LF VPKT +NF AL TGE G G + S FHR
Sbjct: 15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHR 67
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
+I FMIQGGD T +GTGG+SIYG F DENFKLK
Sbjct: 68 VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLK 103
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 172 bits (439), Expect = 1e-52
Identities = 56/96 (58%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N V++D+ IG + GR+ + L +VP TAENFR LCT E G G F GS FHR
Sbjct: 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 63
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
IIPQFM QGGD TN NGTGG+SIYG F+DENF LK
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILK 99
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 172 bits (438), Expect = 2e-52
Identities = 58/97 (59%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G + GS FH
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 54
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
R+IP FM Q GD TN NGTGG+SIYG F DENF LK
Sbjct: 55 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLK 91
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 171 bits (437), Expect = 2e-52
Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 7/97 (7%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
VF ++SI ++ GR+V +L+ VPKTA+NFR L TG++G G + S FH
Sbjct: 1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFH 53
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
R+IPQFM+QGGD T NGTGG+SIYG F DENF++K
Sbjct: 54 RVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVK 90
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 172 bits (438), Expect = 4e-52
Identities = 55/99 (55%), Positives = 66/99 (66%), Gaps = 7/99 (7%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSH 66
KE + V+ DV EE +GR+V++L IVPKTA+NFR LC G+G + GS
Sbjct: 24 KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGST 76
Query: 67 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
FHRIIP FM+QGGD T NGTGG SIYG F DENF+LK
Sbjct: 77 FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELK 115
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 170 bits (434), Expect = 1e-51
Identities = 58/96 (60%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 74
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
IIP FM QGGD T NGTGG+SIYG FEDENF LK
Sbjct: 75 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILK 110
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 165 bits (419), Expect = 1e-49
Identities = 54/101 (53%), Positives = 58/101 (57%), Gaps = 12/101 (11%)
Query: 10 NYIVFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTG 64
VF DV E KVGR+V LF VPKTA+NFR LC G+G +
Sbjct: 2 MSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRE 54
Query: 65 SHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
S FHRIIP FMIQGGD T NGTGG SIYG F DENF K
Sbjct: 55 STFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRK 95
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 143 bits (362), Expect = 5e-41
Identities = 41/153 (26%), Positives = 73/153 (47%)
Query: 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 333
IK GNE+FK N +++A KYK+A+ + + + ++ + LN+A
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
K K Y +AI+ +L ++ NNVKAL++ G A + E+ ++ +A L PN+
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
Query: 394 QQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK 426
I +++ +K+T+ MF G
Sbjct: 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 143 bits (361), Expect = 3e-39
Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 1/172 (0%)
Query: 255 EVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 314
S+ +A+ + + + +K G YFK + A +YKK V +++ Y S S
Sbjct: 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFS 184
Query: 315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374
+ + ++ A+ LN+A LK +A+ AI C+ L ++ NN K L RRG A +++N
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244
Query: 375 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK 426
+FE D+++ L L PN++ ++A ++++R L EK YA MF+
Sbjct: 245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 135 bits (343), Expect = 1e-38
Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN--QSQSKTQQKHFRSYYTA 327
+ + ++ GNE F +A Y+ A+ + + + +
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
NM+ L A ++L E N KALFRR +A+++ ++ +D + L
Sbjct: 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 388 DLLPNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQ 423
P ++ +E+ V ++ ++TY++MFQ
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 140 bits (353), Expect = 4e-38
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 1/166 (0%)
Query: 262 ENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW-YNQSQSKTQQKH 320
+ + + + K GN FK ++ +A ++Y+ A+ Y+ + Q
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224
Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
+ LN+AA +K K Y AI C+ +L E N KALFRRG+A+ + +
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284
Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK 426
D+ +A P+D+ I +E+ + +Q + +K Y +F+
Sbjct: 285 DDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 138 bits (349), Expect = 1e-36
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 1/164 (0%)
Query: 261 AENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 320
A+ + + + +K G YFK + A +Y K V +++ S+ + K
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKA 311
Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
S+ AA LN+A LK + Y +A+ CD L ++ N K L+RRG AQ+ MN FE
Sbjct: 312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371
Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 424
D+E+ L++ P ++ +I+ +K+ + H ++ YA MF+
Sbjct: 372 GDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 109 bits (275), Expect = 9e-29
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G + I LF KT +NF Y + FHR+I FM+Q GD +
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSINGY----------YNNCIFHRVIKHFMVQTGDPSG 63
Query: 84 FNGTGGESIYGPCFEDENFK 103
+GTGGESI+G FEDE F
Sbjct: 64 -DGTGGESIWGNEFEDEFFD 82
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 108 bits (272), Expect = 3e-28
Identities = 37/94 (39%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
D +I +G + +LF PKT ENF Y + G FHRII
Sbjct: 19 RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY----------YNGHTFHRIIK 68
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLK 105
FMIQ GD T G GGESI+G FEDE + L+
Sbjct: 69 GFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTLR 101
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 107 bits (270), Expect = 1e-27
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G +V+EL+ PKT +NF L Y + G+ FHRII FMIQGGD T
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69
Query: 84 FNGTGGESIYGPCFEDE-NFKLK 105
G GG SIYG FEDE + LK
Sbjct: 70 -TGRGGASIYGKQFEDELHPDLK 91
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 104 bits (261), Expect = 2e-26
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 12/83 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G +EL+ + PKT NF LC + + + FHR+IP F+IQGGD T
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLCEMGF----------YDNTIFHRVIPNFVIQGGDPTG 96
Query: 84 FNGTGGESIYGPCFEDE-NFKLK 105
G GG+SIYG FEDE N +LK
Sbjct: 97 -TGKGGKSIYGEYFEDEINKELK 118
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 103 bits (258), Expect = 2e-26
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G +V+EL+ PKT +NF L Y + G+ FHRII FMIQGGD T
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69
Query: 84 FNGTGGESIYGPCFEDE-NFKLK 105
G GG SIYG FEDE + LK
Sbjct: 70 -TGRGGASIYGKQFEDELHPDLK 91
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 100 bits (252), Expect = 3e-25
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
++ G + ELF PK +NF AL Y + + FH+ I
Sbjct: 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY----------YKNTIFHKNIK 63
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDE 100
F+IQGGD T G GGESIYG F+DE
Sbjct: 64 GFIIQGGDPTG-TGKGGESIYGRYFDDE 90
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 97.6 bits (244), Expect = 2e-24
Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
VG + IE+F PKT ENF ALC Y + G FHR I FM+Q GD T
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58
Query: 84 FNGTGGESIYGPCFEDE 100
G GG SI+G FEDE
Sbjct: 59 -TGRGGNSIWGKKFEDE 74
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 97.0 bits (242), Expect = 3e-24
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 261 AENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 320
+P + ++ GNE FK Y A + Y Q+
Sbjct: 13 PGTPEPRPATPGASSVEQLRKEGNELFK-------CGDYGGA---LAAYTQALGLDATPQ 62
Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
++ N AA LK + Y +A + + +VKAL+RR +A + +Q +
Sbjct: 63 DQAVL---HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119
Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQM 407
D ++ + L P ++ + + +
Sbjct: 120 LDLQRCVSLEPKNKVFQEALRNISGPS 146
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 96.6 bits (241), Expect = 9e-24
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
G + IEL+ PK NF LC Y + + FHR++P F++QGGD T
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCLEAY----------YDNTIFHRVVPGFIVQGGDPTG 82
Query: 84 FNGTGGESIYGPCFEDE 100
G+GGESIYG F+DE
Sbjct: 83 -TGSGGESIYGAPFKDE 98
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 93.6 bits (233), Expect = 2e-22
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
G + +EL + PKT ENF LC Y + G+ FHR I F+IQGGD T
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG 77
Query: 84 FNGTGGESIYGPCFEDE 100
GTGGES +G F+DE
Sbjct: 78 -TGTGGESYWGKPFKDE 93
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 92.0 bits (229), Expect = 6e-22
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
G + IEL + P+ ++F LC +Y F + FHR I FMIQGG
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLCAVKY----------FDDTIFHRCIRNFMIQGGRAEL 64
Query: 84 F----NGTGGESIY-------GPCFEDE-NFKLK 105
+S G FEDE + +L
Sbjct: 65 RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLV 98
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 85.9 bits (213), Expect = 5e-20
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K N+YFK + Y+ A IK+Y+Q+ YY N + L+
Sbjct: 17 KTQANDYFK-------AKDYENA---IKFYSQAIELNPSNA--IYYG----NRSLAYLRT 60
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+ +
Sbjct: 61 ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120
Query: 400 IAFVRKQMR 408
K ++
Sbjct: 121 YQECNKIVK 129
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 86.7 bits (215), Expect = 9e-20
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
+G + +EL+ P NF LC Y + + FHR++ F++QGGD T
Sbjct: 30 LGDLDVELWARECPLACRNFVQLCLEGY----------YVNTIFHRVVKDFIVQGGDPTG 79
Query: 84 FNGTGG--ESIYGPCFEDE 100
G GG + G F+ E
Sbjct: 80 -TGRGGADTTFDGKPFDVE 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 83.8 bits (208), Expect = 9e-20
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
KN GNEYFK + Y A ++ YN++ + + Y+ N AA K
Sbjct: 17 KNKGNEYFK-------KGDYPTA---MRHYNEAVKRDPENA--ILYS----NRAACLTKL 60
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
++RA++ CD + ++ +K R+ V+M + + + YE AL + P++++ +
Sbjct: 61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
Query: 400 IAFVRK 405
+ +
Sbjct: 121 VRNCLR 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 83.1 bits (206), Expect = 2e-19
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
KN GNE F+ + Y +A +K Y ++ + + Y+ N AA K
Sbjct: 20 KNKGNECFQ-------KGDYPQA---MKHYTEAIKRNPKDA--KLYS----NRAACYTKL 63
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
++ A+ C++ + +EP +K R+ A +M ++ + + Y++ALDL + ++
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 400 IAFVRKQMRH 409
+
Sbjct: 124 YQRCMMAQYN 133
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 84.4 bits (209), Expect = 2e-19
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEY-----GKGKLGKALHFTGSHFHRIIPQFMIQGG 79
G + I LF + PKT NF L G + G+ FHR+I FMIQGG
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 80 DITNFNGTGGESIYGPCFEDENFKLKGIYPKNKY--PGI 116
D T G GG G F DE +P+ ++ P +
Sbjct: 93 DPTG-TGRGGP---GYKFADE------FHPELQFDKPYL 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 81.1 bits (201), Expect = 8e-19
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K GNE K ++ A + +Y ++ Y+ N AA K
Sbjct: 16 KTEGNEQMK-------VENFEAA---VHFYGKAIELNPANA--VYFC----NRAAAYSKL 59
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
Y A+ C+ + ++P KA R G A S+N + + Y++AL+L P+++
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119
Query: 400 IAFVRKQMR 408
+ ++R
Sbjct: 120 LKIAELKLR 128
Score = 27.6 bits (62), Expect = 4.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ L G Q+ + NFE + Y +A++L P +
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN 45
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 80.8 bits (200), Expect = 1e-18
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K GN F RKY +A Y ++ ++ YYT N A LK
Sbjct: 13 KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 56
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
+ ++A+ C L ++ +VKA F G+ Q+ M ++++ + + ++A L + +
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 79.5 bits (197), Expect = 2e-18
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K GN+ A ++ Y+++ H Y+ N +A K
Sbjct: 8 KEKGNKALS-------VGNIDDA---LQCYSEAIKLDPHNH--VLYS----NRSAAYAKK 51
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
Y++A + ++P+ K R+ A +N FE+ + YE+ L N+ Q+ +
Sbjct: 52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111
Query: 400 IAFVRKQ 406
+ + +
Sbjct: 112 LQNMEAR 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 77.3 bits (191), Expect = 2e-17
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
+ G EYF + + A +K Y + + + Y+ N AA K
Sbjct: 8 RLEGKEYFT-------KSDWPNA---VKAYTEMIKRAPEDA--RGYS----NRAAALAKL 51
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQIL 397
++ AI C+ + +PN V+A R+ AQ+++ + L+ + A N+
Sbjct: 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Query: 398 KEIAFVRKQMR 408
+EI + +
Sbjct: 112 REIDQLYYKAS 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 81.1 bits (200), Expect = 2e-17
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K GN F RKY +A Y ++ ++ YYT N A LK
Sbjct: 8 KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 51
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
+ ++A+ C L ++ +VKA F G+ Q+ M ++++ + + ++A L + +
Sbjct: 52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
Query: 400 IAFVRKQMRHHLNLEKMTYARMFQ 423
++ + R+ Q
Sbjct: 112 DIPSALRIAKKKRWNSIEERRIHQ 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 77.1 bits (190), Expect = 5e-17
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K+ GN +++Y KA I Y Q+ S Y + N AA
Sbjct: 15 KSEGNAAMA-------RKEYSKA---IDLYTQALSIAPANP--IYLS----NRAAAYSAS 58
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQIL 397
+++A + +++P KA R G A+ M +++ + YE+ ++ N +
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 398 KEIAFVRKQMR 408
+ + ++++
Sbjct: 119 RGLETTKRKIE 129
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 80.0 bits (198), Expect = 1e-16
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
S E + R DA KY+ ++ + Y + + K
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKT------------EPSVAEYTVRSKERICHCFSKD 285
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
+ AI +C ++L MEP+NV AL R A + +++ +QDYE A + NDQQI +
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345
Query: 400 IAFVRKQMR 408
+ ++ ++
Sbjct: 346 LEKAQRLLK 354
Score = 70.8 bits (174), Expect = 1e-13
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 16/141 (11%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
G + ++ DA ++ AV A A V L
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAM 50
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
K A+ ++ ++ + A +RG + ++ D+++ L P++Q+ +
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110
Query: 400 IAFVRKQMRHHLNLEKMTYAR 420
+ + K + A
Sbjct: 111 ESQLVKADEMQRLRSQALDAF 131
Score = 61.1 bits (149), Expect = 2e-10
Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 33/163 (20%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR--------------------YIKWYNQSQSKTQQKH 320
G+ K ++ +A+ +KK ++ + +Q+
Sbjct: 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135
Query: 321 FR---SYYTAAL----------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367
+ ++ L A +K ++AI+ ++ +N +A ++
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195
Query: 368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
+ + E L + + L L + ++ V+K +
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238
Score = 56.9 bits (138), Expect = 4e-09
Identities = 12/80 (15%), Positives = 28/80 (35%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
L + L A++ + +P+N A +RR ++M + L D + +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64
Query: 388 DLLPNDQQILKEIAFVRKQM 407
L + + + +
Sbjct: 65 ALKMDFTAARLQRGHLLLKQ 84
Score = 44.2 bits (105), Expect = 5e-05
Identities = 11/126 (8%), Positives = 36/126 (28%), Gaps = 28/126 (22%)
Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
+ K A K A + +S T A ++ + + +
Sbjct: 161 AECFIKEGEPRKAISDLKAASK----------------LKSDNTEAFYKISTLYYQLGDH 204
Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQ------------VSMNNFEQGLQDYEQALDLL 390
+ +++ + L ++ ++ + + + + + YE +
Sbjct: 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Query: 391 PNDQQI 396
P+ +
Sbjct: 265 PSVAEY 270
Score = 33.4 bits (77), Expect = 0.13
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+V+ G+ ++ L + A+D P++
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 78.6 bits (194), Expect = 6e-16
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
S E + R DA KY+ ++ + Y + + K
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKT------------EPSIAEYTVRSKERICHCFSKD 308
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
+ AI +C ++L MEP+NV AL R A + +++ +QDYE A + NDQQI +
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368
Query: 400 IAFVRKQMRH 409
+ ++ ++
Sbjct: 369 LEKAQRLLKQ 378
Score = 73.2 bits (180), Expect = 3e-14
Identities = 20/164 (12%), Positives = 53/164 (32%), Gaps = 24/164 (14%)
Query: 258 YVEAENDKPLVLNQMEDVIRTI------KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ 311
+ + + L +++ G + ++ DA ++ AV
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG------ 55
Query: 312 SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQV 371
A A V L K A+ ++ ++ + A +RG +
Sbjct: 56 ----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105
Query: 372 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK--QMRHHLNL 413
++ D+++ L P++ + + + + K +M+ +
Sbjct: 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149
Score = 63.2 bits (154), Expect = 6e-11
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G+ K ++ +A+ +KK ++ + + Q + +S L + A
Sbjct: 99 QRGHLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
Y AI D IL + + + R + + + D + A L ++ + +I
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217
Query: 401 AFVRKQMRHH 410
+ + Q+ H
Sbjct: 218 STLYYQLGDH 227
Score = 43.5 bits (103), Expect = 8e-05
Identities = 11/126 (8%), Positives = 35/126 (27%), Gaps = 28/126 (22%)
Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
+ K A K A + ++ T A ++ + + +
Sbjct: 184 AECFIKEGEPRKAISDLKAASK----------------LKNDNTEAFYKISTLYYQLGDH 227
Query: 343 KRAINLCDDILLMEPNNVKA------------LFRRGRAQVSMNNFEQGLQDYEQALDLL 390
+ +++ + L ++ ++ + L + + YE +
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287
Query: 391 PNDQQI 396
P+ +
Sbjct: 288 PSIAEY 293
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 72.6 bits (179), Expect = 2e-15
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
G +VI+ F P+T +NF C + + + FHR+I FMIQGG F
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGG---F 55
Query: 85 NGTGGESIYGPCFEDE 100
+ ++E
Sbjct: 56 EPGMKQKATKEPIKNE 71
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 75.9 bits (187), Expect = 5e-15
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
+K N+YFK +A + Y +A I+ + YY N + L+
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQA---IELNPSNAI---------YYG----NRSLAYLR 52
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 53 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112
Query: 399 EIAFVRKQMR 408
+ K ++
Sbjct: 113 KYQECNKIVK 122
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 70.0 bits (172), Expect = 7e-15
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K GN+ +K ++ + A +K Y++++ +Y T N AAV +
Sbjct: 8 KELGNDAYK-------KKDFDTA---LKHYDKAKELDPTNM--TYIT----NQAAVYFEK 51
Query: 340 KAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
Y + LC+ + + N KA R G + ++ + Y ++L
Sbjct: 52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHR 110
Query: 393 DQQILKEIAFVRKQMR 408
+LK+ K ++
Sbjct: 111 TPDVLKKCQQAEKILK 126
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 71.0 bits (175), Expect = 7e-15
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
G + +EL + PKT ENF KG H+ G+ FHR+I FMIQGG F
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYVK----KG------HYDGTIFHRVINGFMIQGGG---F 59
Query: 85 NGTGGESIYGPCFEDE 100
+ +E
Sbjct: 60 EPGLKQKPTDAPIANE 75
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 71.1 bits (175), Expect = 8e-15
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
+G+ V L S G + +EL K P + +NF + + + F
Sbjct: 2 KGDPHVLLTTSAGN-----IELELDKQKAPVSVQNFVDYV----------NSGFYNNTTF 46
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100
HR+IP FMIQGG F + P ++E
Sbjct: 47 HRVIPGFMIQGGG---FTEQMQQKKPNPPIKNE 76
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 69.6 bits (171), Expect = 8e-15
Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 24/143 (16%)
Query: 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAAL 329
N M D K+ GN +K Q+ ++KA Y+++
Sbjct: 2 NAMTDAAIAEKDLGNAAYK-------QKDFEKA---HVHYDKAIE------LDPSNITFY 45
Query: 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQD 382
N AAV + K + + C+ + + KA+ R G A N+ +Q
Sbjct: 46 NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
Query: 383 YEQALDLLPNDQQILKEIAFVRK 405
+ ++L D +++K++ + K
Sbjct: 106 FHRSLS-EFRDPELVKKVKELEK 127
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 66.0 bits (162), Expect = 2e-12
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
+ G EYF + +A + Y + ++ N AA K
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIK----------------RAPEDARGYSNRAAALAKL 186
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--IL 397
++ AI C+ + +PN V+A R+ AQ+++ + L+ + A
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246
Query: 398 KEIA 401
+EI
Sbjct: 247 REID 250
Score = 58.7 bits (143), Expect = 5e-10
Identities = 15/148 (10%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 329
K + ++ + KK + + + + T+ ++ A
Sbjct: 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135
Query: 330 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
+ A+ +++ P + + R A + +F + + D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 383 YEQALDLLPNDQQILKEIAFVRKQMRHH 410
+A++ PN + A + ++ +
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQIAVKEY 223
Score = 57.2 bits (139), Expect = 2e-09
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K GN+++K + +A Y KA K N AA + +
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWEL------------HKDITYLN-----NRAAAEYEK 51
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394
Y+ AI+ +D + ++ + N L D ++ ++
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
Score = 38.7 bits (91), Expect = 0.002
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
K + + AI + + + L R A+ +E + A+
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAV 65
Query: 388 DLLPNDQQILKEIAFVRKQM 407
+ + K I+ ++
Sbjct: 66 EQGREMRADYKVISKSFARI 85
Score = 32.9 bits (76), Expect = 0.16
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
+ G F++ ++ Y +A +L +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD 37
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 61.9 bits (151), Expect = 3e-12
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 17/120 (14%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K GN FK Q Y++A + Y+Q + Q Y+ N A +K
Sbjct: 8 KEQGNSLFK-------QGLYREA---VHCYDQLITAQPQNP--VGYS----NKAMALIKL 51
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
Y +AI +C L R Q + + + + + + +
Sbjct: 52 GEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 65.6 bits (160), Expect = 1e-11
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 16/139 (11%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ + + ++ + + A+ + V+ +
Sbjct: 28 MLADAELGMGDTTAGEMAVQRGLA----------------LHPGHPEAVARLGRVRWTQQ 71
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
+ A L P + G A E Y +A LLP + I ++
Sbjct: 72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131
Query: 401 AFVRKQMRHHLNLEKMTYA 419
R+++ L+ ++
Sbjct: 132 LNWRRRLCDWRALDVLSAQ 150
Score = 51.0 bits (122), Expect = 4e-07
Identities = 15/86 (17%), Positives = 27/86 (31%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
A L +A +L L + P + +A+ R GR + + + +
Sbjct: 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81
Query: 385 QALDLLPNDQQILKEIAFVRKQMRHH 410
QA D P I + +
Sbjct: 82 QASDAAPEHPGIALWLGHALEDAGQA 107
Score = 46.0 bits (109), Expect = 2e-05
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
R + + P + A A++ M + G ++ L L P + + +
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 402 FVRKQMRHH 410
VR + H
Sbjct: 65 RVRWTQQRH 73
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 61.3 bits (149), Expect = 1e-11
Identities = 16/131 (12%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
+ +D++ I + +++ R+ +A+ ++ Y Y
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVD 71
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
++ +AA+ + +++A +L + N+ +F G+ Q+ + + + +E +
Sbjct: 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131
Query: 388 DLLPNDQQILK 398
+++ +K
Sbjct: 132 QHSNDEKLKIK 142
Score = 43.2 bits (102), Expect = 3e-05
Identities = 11/83 (13%), Positives = 24/83 (28%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
+ + A + A + + + NV + F+Q Y A
Sbjct: 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97
Query: 388 DLLPNDQQILKEIAFVRKQMRHH 410
L ND + + +++
Sbjct: 98 ALGKNDYTPVFHTGQCQLRLKAP 120
Score = 35.2 bits (81), Expect = 0.016
Identities = 4/60 (6%), Positives = 17/60 (28%)
Query: 351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
DI + + + ++ + E+ + + + +A + +
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 64.5 bits (157), Expect = 3e-11
Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 23/137 (16%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF- 339
G ++ +L + A + + Y L + V
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYA----------------LFQYDPLLLNELGVVAFNKS 489
Query: 340 ------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
++ A+ L E G A + ++ + Q L L ND
Sbjct: 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549
Query: 394 QQILKEIAFVRKQMRHH 410
+ IA V +
Sbjct: 550 ANVHTAIALVYLHKKIP 566
Score = 60.6 bits (147), Expect = 4e-10
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G F + M A ++ A+ +K ++ + A N+ K K
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------WAATWANLGHAYRKLK 530
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395
Y AI+ + LL+ N+ + + ++L + PN+
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585
Score = 50.6 bits (121), Expect = 6e-07
Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 20/135 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 327
G Y +N++ +A+R + K+ + W + S + +Y TA
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSST-MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 328 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
L + ++ A + + L G + ++ + +
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496
Query: 382 DYEQALDLLPNDQQI 396
++ AL L+ Q
Sbjct: 497 HFQNALLLVKKTQSN 511
Score = 47.9 bits (114), Expect = 4e-06
Identities = 14/151 (9%), Positives = 39/151 (25%), Gaps = 21/151 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR----YIKWYN-----------------QSQSKTQQK 319
G Y L+ A+ YK+A+ + ++ + +
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264
Query: 320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
+ + +L + + + R + + L + + F
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324
Query: 380 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
L + L++ P + + +
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEK 355
Score = 46.0 bits (109), Expect = 2e-05
Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 10/108 (9%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
Y + + ++A Y+ N + + LL A +
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEK----------SSDLLLCKADTLFVRSRFIDV 324
Query: 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ + IL ++P N+ + + +D P
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372
Score = 42.9 bits (101), Expect = 1e-04
Identities = 21/201 (10%), Positives = 51/201 (25%), Gaps = 12/201 (5%)
Query: 193 EAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGV 252
AK Y + AL E +L ++ + DLV K +
Sbjct: 218 RAKECYKE-ALMVDAKCYEAFDQL--VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274
Query: 253 AREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS 312
+ D+ I ++ S + + ++ + +
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV---LAITTKI 331
Query: 313 QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS 372
Y A + + + +D++ P G +
Sbjct: 332 LEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385
Query: 373 MNNFEQGLQDYEQALDLLPND 393
+N + + + ++ + P
Sbjct: 386 VNKISEARRYFSKSSTMDPQF 406
Score = 42.5 bits (100), Expect = 2e-04
Identities = 15/131 (11%), Positives = 25/131 (19%), Gaps = 18/131 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAV-----RYIKWYNQSQSKTQQKHF-------------R 322
+ F +R D K + + S +
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369
Query: 323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
L + L A M+P A + +Q +
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429
Query: 383 YEQALDLLPND 393
Y A L
Sbjct: 430 YTTAARLFQGT 440
Score = 33.3 bits (76), Expect = 0.17
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 6/133 (4%)
Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
KL A + + K + Q + V +
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216
Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 402
RA + L+++ +A + N+ ++++ L L ++ AF
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVS-----NHLLTADEEWDLVLKLNY-STYSKEDAAF 270
Query: 403 VRKQMRHHLNLEK 415
+R LN
Sbjct: 271 LRSLYMLKLNKTS 283
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 63.6 bits (155), Expect = 4e-11
Identities = 15/150 (10%), Positives = 40/150 (26%), Gaps = 18/150 (12%)
Query: 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF--------- 321
+ I + L + +A + + K +
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165
Query: 322 ----RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
A+ + + + +R + + + P V A+ G + ++ +
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225
Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
+ L QA L P + ++ +
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255
Score = 62.8 bits (153), Expect = 8e-11
Identities = 17/159 (10%), Positives = 41/159 (25%), Gaps = 22/159 (13%)
Query: 258 YVEAEND--KPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN 310
+ L + I + L + +A + +
Sbjct: 326 VQRLLPVLCQAHGLTP--QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383
Query: 311 QSQSKTQQKHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357
K + + A+ + + + +R + + + P
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443
Query: 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
V A+ G + ++ + L + AL L ND +
Sbjct: 444 QQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482
Score = 59.8 bits (145), Expect = 7e-10
Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 18/147 (12%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY----- 324
I ++G L + +A + + K + +
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
Query: 325 ----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
A+ + + + +R + + + P V A+ + ++ ++ L
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL 296
Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQM 407
QA L P + ++ +
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQAL 323
Score = 58.6 bits (142), Expect = 2e-09
Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 18/148 (12%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY------- 324
++G L + +A + + S K + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306
Query: 325 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
A+ + + + +R + + + P V A+ + ++ ++ L
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366
Query: 383 YEQALDLLPNDQQILKEIAFVRKQMRHH 410
QA L P + ++ +
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETV 394
Score = 58.2 bits (141), Expect = 2e-09
Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 18/144 (12%)
Query: 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS 323
+ L + I ++G L + +A
Sbjct: 300 CQAHGLTP--QQVVAIASNGGGKQALETVQRLLPVLCQAHG----------------LTP 341
Query: 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 383
A+ + + + +R + + + P V A+ G + ++ ++ L
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401
Query: 384 EQALDLLPNDQQILKEIAFVRKQM 407
QA L P + ++ +
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQAL 425
Score = 56.3 bits (136), Expect = 8e-09
Identities = 10/86 (11%), Positives = 28/86 (32%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
A+ + + + +R + + + P V A+ + ++ ++ L
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130
Query: 385 QALDLLPNDQQILKEIAFVRKQMRHH 410
QA L P + ++ +
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETV 156
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 63.2 bits (154), Expect = 6e-11
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
+ E + E + +++++G F N A KKA+
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------------ 266
Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
SY MA + N D L ++ NN + RG+ + N++
Sbjct: 267 FPRVNSYI-----YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321
Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408
Q +D+++A +L P + ++A + +
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYREN 352
Score = 59.4 bits (144), Expect = 1e-09
Identities = 20/161 (12%), Positives = 55/161 (34%), Gaps = 28/161 (17%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF----RSY------- 324
++ N+ D + + +A R ++ T + F + Y
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402
Query: 325 --YTAALLNMAAVQLKFKA---------YKRAINLCDDILLMEPNNVKALFRRGRAQVSM 373
+ +A + K + A NL + ++P + +A + ++
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
Query: 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414
+ ++ + +E++ DL ++ L+ I F + + +
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITF-AEAAKVQQRIR 502
Score = 55.5 bits (134), Expect = 1e-08
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
K+ GN++F+ + DA + Y A+ ++ N++A +
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDP------VFYSNLSACYVSV 52
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQI 396
K+ + + L ++P+ K L RR A + F + D +L+ ND I
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110
Score = 52.8 bits (127), Expect = 1e-07
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 16/113 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ G F L A + + KA + +A + +
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKEL----------------DPENIFPYIQLACLAYREN 352
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ L + P + N+F++ L+ Y+ A++L
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405
Score = 45.9 bits (109), Expect = 2e-05
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
Y AL + + K Y AI + L ++ + V VS+ + ++ ++
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63
Query: 385 QALDLLPNDQQILKEIAFVRKQM 407
+AL+L P+ ++L A + +
Sbjct: 64 KALELKPDYSKVLLRRASANEGL 86
Score = 32.8 bits (75), Expect = 0.24
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
AL +G ++ ++ Y AL+L +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED 38
Score = 29.7 bits (67), Expect = 2.0
Identities = 10/146 (6%), Positives = 27/146 (18%), Gaps = 13/146 (8%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ L + DA + + +L +
Sbjct: 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDA-------------SIEPMLERNLNKQAMS 124
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
K D + + + + + +
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184
Query: 401 AFVRKQMRHHLNLEKMTYARMFQNGK 426
++ M NL K + + +
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADE 210
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 62.3 bits (152), Expect = 7e-11
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 7/123 (5%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G F+ A++ + A+ IK + + + L N+ V K K
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-------WEPLLNNLGHVCRKLK 250
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
Y A++ L++ P N G M NFE + + AL L +D + +
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310
Query: 401 AFV 403
Sbjct: 311 GHC 313
Score = 54.2 bits (131), Expect = 2e-08
Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 27/154 (17%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN-----QSQSKTQQ--KHFR------ 322
G+ + + A Y A + ++ + ++ + F
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189
Query: 323 SYYTAALLNMAAVQLK-------FKAYKRAINLCDDIL--LMEPNNVKALFRRGRAQVSM 373
+ + V + K + A+ I + L G +
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249
Query: 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
+ + L + QAL L+P + I ++ M
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283
Score = 49.2 bits (118), Expect = 1e-06
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 21/134 (15%)
Query: 281 NSGNEYFKLNRMHD-AQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA-- 327
G Y + ++ A+R KA ++ W S + +Y+TA
Sbjct: 95 AVGCYYLMVGHKNEHARRYLSKATT-LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153
Query: 328 -------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
+L + K A L + P + + G ++
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213
Query: 381 QDYEQALDLLPNDQ 394
+ + AL+ +
Sbjct: 214 KWFLDALEKIKAIG 227
Score = 42.7 bits (101), Expect = 1e-04
Identities = 11/153 (7%), Positives = 37/153 (24%), Gaps = 19/153 (12%)
Query: 260 EAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAV-----RYIKWYNQSQS 314
+E P ++ +++ + + + ++ + + +
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 315 KTQQKH----FRSYYTA---------ALLNMAAV-QLKFKAYKRAINLCDDILLMEPNNV 360
+ F + + + + + A +E
Sbjct: 66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125
Query: 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
A G + + +Q + Y A L+
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158
Score = 34.2 bits (79), Expect = 0.060
Identities = 5/55 (9%), Positives = 16/55 (29%)
Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
K + + + + N+ + +F+ + ++ P L
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 59.0 bits (143), Expect = 7e-11
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 16/113 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G ++ + DAQ+ ++ Y L + A +
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCML----------------DHYDARYFLGLGACRQSLG 66
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
Y++A+ LM+ N + F + + + + + A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
Score = 43.2 bits (102), Expect = 2e-05
Identities = 13/83 (15%), Positives = 30/83 (36%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
L + Q + + A + + +++ + + G + S+ +EQ LQ Y
Sbjct: 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79
Query: 388 DLLPNDQQILKEIAFVRKQMRHH 410
+ N+ + A Q+
Sbjct: 80 LMDINEPRFPFHAAECHLQLGDL 102
Score = 35.5 bits (82), Expect = 0.009
Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
L + ++ L+ G Q ++ + ++ L D +
Sbjct: 5 GTLAMLRGL-------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLG 57
Query: 400 IAFVRKQMRHH 410
+ R+ + +
Sbjct: 58 LGACRQSLGLY 68
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 62.4 bits (152), Expect = 1e-10
Identities = 28/256 (10%), Positives = 76/256 (29%), Gaps = 26/256 (10%)
Query: 161 VSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKH------YYNQGALEKKRGITEHKK 214
+S F + N+ + ++ L + +L GI +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178
Query: 215 KLETGRGK---EISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQ 271
++ + + + D +++ V Y + +
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN 331
E+ + +G +F N + DAQ ++++ SY
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL------------HPTPNSYI-----F 281
Query: 332 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
+A + + + + P + RG+ + +++ +D+++A L P
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 392 NDQQILKEIAFVRKQM 407
+ ++A + +
Sbjct: 342 ENVYPYIQLACLLYKQ 357
Score = 60.1 bits (146), Expect = 6e-10
Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 1/134 (0%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
A ++Y A R + + ++ A + QL +
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
+ AI L ++P + +A + ++ M ++ ++ +E + L + L+
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
Query: 401 AFVRKQMRHHLNLE 414
F + + L
Sbjct: 503 TF-AEAAKIQKRLR 515
Score = 57.8 bits (140), Expect = 3e-09
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 20/171 (11%)
Query: 255 EVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 314
E + + P +Q + +KN GN +F ++A + Y+ A+
Sbjct: 7 EPDIAQLKGLSP---SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI----------- 52
Query: 315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374
+ Y N++A + ++ I L ++P++ KAL RR A S+
Sbjct: 53 ELDPNEPVFYS-----NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107
Query: 375 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 425
NF + D L L + E R + + + ++ G
Sbjct: 108 NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157
Score = 54.0 bits (130), Expect = 5e-08
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 298 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357
+ Q + + + R Y L N K + AI + ++P
Sbjct: 2 SHMNG---EPDIAQLKGLSPSQ--RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP 56
Query: 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
N +S + E+ ++ +AL++ P+ + L A + +
Sbjct: 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106
Score = 52.8 bits (127), Expect = 1e-07
Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 16/144 (11%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ G YF L +A+ ++KA + +A + K
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSL----------------NPENVYPYIQLACLLYKQG 358
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
+ + ++ L P + +F+ ++ Y+ A L ++I I
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418
Query: 401 AFVRKQMRHHLNLEKMTYARMFQN 424
+ + ++ +
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEE 442
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 59.4 bits (144), Expect = 2e-10
Identities = 19/123 (15%), Positives = 39/123 (31%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ + + A +++ + + T + +A K +
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
Y +A ++L PNNV L QV + L+ YE+ L L ++ +
Sbjct: 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128
Query: 401 AFV 403
Sbjct: 129 GNY 131
Score = 56.3 bits (136), Expect = 2e-09
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA-AVQLKF 339
+ DA R Y+K ++ + AA + + L
Sbjct: 93 ACAEMQVCRGQEKDALRMYEKILQ----------------LEADNLAANIFLGNYYYLTA 136
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQIL 397
+ K+ + L A +R G +++ +E+ ++ + P+ Q+ L
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196
Query: 398 KEIAFVRKQM 407
+I + K++
Sbjct: 197 DKILRIEKEV 206
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 17/144 (11%)
Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
V E + Y K A YK+ ++
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK----------------APNNVD 89
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQA 386
L A +Q+ K A+ + + IL +E +N+ A G ++ ++ L+ +
Sbjct: 90 CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149
Query: 387 LDLLPNDQQILKEIAFVRKQMRHH 410
L Q + +
Sbjct: 150 LSSPTKMQYARYRDGLSKLFTTRY 173
Score = 40.5 bits (95), Expect = 4e-04
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR----------------GRAQV 371
+L + ++ +A++ + + + + + A
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 372 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
N+++ Y++ L PN+ L+ A ++
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Score = 30.9 bits (70), Expect = 0.61
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
+V + ++ A + Q + + Q + L + ++
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY 41
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 58.7 bits (142), Expect = 2e-10
Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 16/129 (12%)
Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
G Y N ++ Y++A++ + + + L A
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQL---------RGENAELYAALATVLYYQA----SQHMT 97
Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKE 399
+ + D L ++ N + AL N+ Q ++ +++ +DL Q+++
Sbjct: 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157
Query: 400 IAFVRKQMR 408
I + R
Sbjct: 158 INMAKLLQR 166
Score = 49.1 bits (117), Expect = 3e-07
Identities = 13/77 (16%), Positives = 26/77 (33%)
Query: 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
+ + + + D + P N + G + N++ L Y QA
Sbjct: 11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70
Query: 387 LDLLPNDQQILKEIAFV 403
L L + ++ +A V
Sbjct: 71 LQLRGENAELYAALATV 87
Score = 36.4 bits (84), Expect = 0.008
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 3/73 (4%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN---FEQGLQDYE 384
+ L Y ++ L + N + + Q +
Sbjct: 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMID 105
Query: 385 QALDLLPNDQQIL 397
+AL L N+ L
Sbjct: 106 KALALDSNEITAL 118
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 61.6 bits (149), Expect = 3e-10
Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 20/152 (13%)
Query: 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQ 318
+ L D + I ++ L + +A + + K
Sbjct: 250 CQAHGLPP--DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQAL 307
Query: 319 KHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365
+ + A+ + + + +R + + + P+ V A+
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367
Query: 366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
G + ++ ++ L QA L P+ +
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 399
Score = 58.9 bits (142), Expect = 2e-09
Identities = 17/151 (11%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316
+ A PL L + I ++ L + +A
Sbjct: 175 ASRNALTGAPLNLTP--AQVVAIASNNGGKQALETVQRLLPVLCQAHG------------ 220
Query: 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
A+ + + + +R + + + P+ V A+ + ++
Sbjct: 221 ----LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276
Query: 377 EQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
++ L QA L P+ + ++ +
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQAL 307
Score = 58.9 bits (142), Expect = 2e-09
Identities = 12/145 (8%), Positives = 38/145 (26%), Gaps = 18/145 (12%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYI-----KWYNQSQSKTQQKHFR----SY------- 324
++ L + +A + K + +
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
Query: 325 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
A+ + + + +R + + + V A+ + ++ ++ L
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723
Query: 383 YEQALDLLPNDQQILKEIAFVRKQM 407
QA L P+ + ++ +
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQAL 748
Score = 56.6 bits (136), Expect = 9e-09
Identities = 17/165 (10%), Positives = 46/165 (27%), Gaps = 20/165 (12%)
Query: 261 AENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSK 315
+ L D + I ++G L + +A + + K
Sbjct: 518 PVLCQAHGLTP--DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 575
Query: 316 TQQKHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 362
+ + A+ + + + +R + + + P V A
Sbjct: 576 QALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635
Query: 363 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
+ + ++ ++ L QA L P+ + ++ +
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680
Score = 56.6 bits (136), Expect = 1e-08
Identities = 17/172 (9%), Positives = 45/172 (26%), Gaps = 25/172 (14%)
Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQ 311
+A P + I + L M +A + +
Sbjct: 214 VLCQAHGLTP-------AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASN 266
Query: 312 SQSKTQQKHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358
K + + A+ + + + +R + + + P+
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326
Query: 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
V A+ + ++ ++ L QA L P+ + ++ +
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378
Score = 53.1 bits (127), Expect = 1e-07
Identities = 19/171 (11%), Positives = 47/171 (27%), Gaps = 24/171 (14%)
Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQ 311
+A P D + I ++G L + +A + +
Sbjct: 350 VLCQAHGLTP-------DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 402
Query: 312 SQSKTQ---QKHFRSY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359
+ Q+ A+ + + + +R + + + P
Sbjct: 403 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
V A+ + ++ +Q L QA L P+ + ++ +
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATV 513
Score = 51.2 bits (122), Expect = 4e-07
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 23/141 (16%)
Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316
+A P D + I ++G L + +A
Sbjct: 655 VLCQAHGLTP-------DQVVAIASNGGGKQALETVQRLLPVLCQAHG------------ 695
Query: 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
A+ + + + +R + + + P+ V A+ G + ++
Sbjct: 696 ----LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 751
Query: 377 EQGLQDYEQALDLLPNDQQIL 397
++ L QA L P +
Sbjct: 752 QRLLPVLCQAHGLTPAQVVAI 772
Score = 51.2 bits (122), Expect = 4e-07
Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 18/144 (12%)
Query: 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS 323
+ L + I + L + +A
Sbjct: 453 CQTHGLTP--AQVVAIASHDGGKQALETVQQLLPVLCQAHG----------------LTP 494
Query: 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 383
A+ + + +R + + + P+ V A+ G + ++ ++ L
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 554
Query: 384 EQALDLLPNDQQILKEIAFVRKQM 407
QA L P+ + ++ +
Sbjct: 555 CQAHGLTPDQVVAIASNGGGKQAL 578
Score = 43.5 bits (102), Expect = 1e-04
Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 10/117 (8%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ A ++ + Q A+ + + +
Sbjct: 835 DQVVAIASNIGGKQALETVQRLL---------PVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
+R + + + + V A+ G Q ++ ++ L Q L P+ +
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASNGGKQ-ALETVQRLLPVLCQDHGLTPDQVVAI 941
Score = 41.6 bits (97), Expect = 5e-04
Identities = 11/88 (12%), Positives = 25/88 (28%)
Query: 320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
+ + V + L L + P V A+ + ++ ++
Sbjct: 152 QLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRL 211
Query: 380 LQDYEQALDLLPNDQQILKEIAFVRKQM 407
L QA L P + ++ +
Sbjct: 212 LPVLCQAHGLTPAQVVAIASHDGGKQAL 239
Score = 40.4 bits (94), Expect = 0.001
Identities = 8/75 (10%), Positives = 25/75 (33%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
A+ + + + +R + + + + V A+ + ++ ++ L
Sbjct: 802 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861
Query: 385 QALDLLPNDQQILKE 399
Q L P+ +
Sbjct: 862 QDHGLTPDQVVAIAS 876
Score = 40.4 bits (94), Expect = 0.001
Identities = 11/105 (10%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354
A ++ + Q+ T A+ + + + +R + +
Sbjct: 747 ALETVQRL---LPVLCQAHGLTPA------QVVAIASNIGGKQALETVQRLLPVLCQDHG 797
Query: 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
+ V A+ + ++ ++ L QA L + +
Sbjct: 798 LTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842
Score = 39.6 bits (92), Expect = 0.002
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
A+ + Q + +R + + + P+ V A+ + ++ ++ L
Sbjct: 904 QVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLC 962
Query: 385 QALDLLPNDQQIL 397
Q L PN +
Sbjct: 963 QDHGLTPNQVVAI 975
Score = 35.8 bits (82), Expect = 0.034
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 290 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC 349
+ A K+A+ ++ Q A+ + + + + +R + +
Sbjct: 904 QVVAIASNGGKQALETVQ--RLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVL 961
Query: 350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394
+ PN V A+ G Q + Q L + AL L ND
Sbjct: 962 CQDHGLTPNQVVAIASNGGKQALESIVAQ-LSRPDPALAALTNDH 1005
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 57.6 bits (140), Expect = 3e-09
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 18/148 (12%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 329
+ ++ A+R + R S Q + + T A+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 330 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
N+ V + + AI L ++P+ + A V+ + E +Q
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 383 YEQALDLLPNDQQILKEIAFVRKQMRHH 410
Y AL P+ + ++ + K +
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRL 151
Score = 56.8 bits (138), Expect = 4e-09
Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 18/154 (11%)
Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQS 312
+ AE + Q D + + +F+ R+ + A++ + N
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 313 QSKTQQKHF-------------RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359
++ + + +N+AA + + A+ L P+
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
G ++ E+ Y +A++ PN
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168
Score = 56.4 bits (137), Expect = 6e-09
Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 20/146 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
N Y++ + A Y++A+ ++ + N + + ++ Y
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
+ +L N+A ++ + + A+ L L + P A ++ L
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 382 DYEQALDLLPNDQQILKEIAFVRKQM 407
Y++A+ + P + K+M
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEM 386
Score = 54.5 bits (132), Expect = 3e-08
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
N GN + A Y +A+ + N + +Q +Y
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
+ A N+A + + A + + L + P + +L + N E+ ++
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326
Query: 382 DYEQALDLLPNDQQILKEIAFVRKQM 407
Y +AL++ P +A V +Q
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQ 352
Score = 54.1 bits (131), Expect = 4e-08
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 327
N GN Y + ++ +A Y+ A+R +K + N + + ++Y +A
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130
Query: 328 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
++ + + A + +PN A G + +
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 382 DYEQALDLLPND 393
+E+A+ L PN
Sbjct: 191 HFEKAVTLDPNF 202
Score = 53.7 bits (130), Expect = 4e-08
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 20/149 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
N M A + Y A++ + Y
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
+ A N+ V AI+ + + ++PN + A G F++ +
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 382 DYEQALDLLPNDQQILKEIAFVRKQMRHH 410
Y +AL L PN + +A V +
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Score = 52.9 bits (128), Expect = 8e-08
Identities = 11/79 (13%), Positives = 25/79 (31%)
Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
+ +A + + ++ A C + EP+N L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 389 LLPNDQQILKEIAFVRKQM 407
P + + V K+
Sbjct: 62 QNPLLAEAYSNLGNVYKER 80
Score = 52.5 bits (127), Expect = 1e-07
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
+ GN L R+ +A+ Y KA+ + W N Q +
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
+ A +N+ V + + + RA+ L + PN+ + +
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 382 DYEQALDLLPND 393
Y +A++L P+
Sbjct: 259 TYRRAIELQPHF 270
Score = 51.8 bits (125), Expect = 2e-07
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 20/132 (15%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
N G + + A ++KAV + + N + + F +Y
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
+ N+A V + AI+ + ++P+ A A + +
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 382 DYEQALDLLPND 393
Y AL L P
Sbjct: 293 CYNTALRLCPTH 304
Score = 37.1 bits (87), Expect = 0.010
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 20/114 (17%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
N N + + +A+ Y A+R + N + K +Q + R Y
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 375
+ AA N+A+V + + A+ + + + P A G M +
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 55.7 bits (135), Expect = 6e-09
Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 17/136 (12%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 335
G Y+ A + K + YI + ++++ Q A
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA-------- 198
Query: 336 QLKFKAYKRAINLC-DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394
Y++ I +C + ++A + + ++ L L P ++
Sbjct: 199 ---KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255
Query: 395 QILKEIAFVRKQMRHH 410
+ + + + HH
Sbjct: 256 KAIDGLKMKLEHHHHH 271
Score = 53.0 bits (128), Expect = 5e-08
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 13/113 (11%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
Y++L KY A + I+ Y + +A + +K
Sbjct: 42 RRAVCYYELA-------KYDLAQKDIETYFSKVNA------TKAKSADFEYYGKILMKKG 88
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
AI + + + + G + NF +Q E+ + D
Sbjct: 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141
Score = 48.0 bits (115), Expect = 2e-06
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 19/122 (15%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
G+ ++ A + +K +R + +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIR----------------PTTTDPKVFYELGQAYYYN 155
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN---FEQGLQDYEQALDLLPNDQQI 396
K Y +A + +L ++PN R RA + + YE+ +++
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
Query: 397 LK 398
K
Sbjct: 216 YK 217
Score = 47.7 bits (114), Expect = 3e-06
Identities = 15/130 (11%), Positives = 29/130 (22%), Gaps = 19/130 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ FK N +A + K + Y A +
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLE-----------AKKYNSPYIYN-----RRAVCYYELA 51
Query: 341 AYKRAINLCDD---ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
Y A + + G+ + +Q Y+ A+D +
Sbjct: 52 KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Query: 398 KEIAFVRKQM 407
+I
Sbjct: 112 GQIGSYFYNK 121
Score = 41.9 bits (99), Expect = 2e-04
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD---YE 384
A K Y AI + + + + N+ RR + ++ +D Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 385 QALDLLPND 393
++
Sbjct: 65 SKVNATKAK 73
Score = 31.9 bits (73), Expect = 0.32
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
N FR NN+ + ++ + + N I A ++
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL 50
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 55.6 bits (133), Expect = 2e-08
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
N N + + +A R Y+KA+ + AA N+A+V +
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEV----------------FPEFAAAHSNLASVLQQQG 57
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
+ A+ + + + P A G M + + LQ Y +A+ + P +
Sbjct: 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117
Query: 401 AFVRKQMRHH 410
A + K +
Sbjct: 118 ASIHKDSGNI 127
Score = 53.3 bits (127), Expect = 1e-07
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
N + + ++ +A YK+A+R + A NM + +
Sbjct: 48 NLASVLQQQGKLQEALMHYKEAIR----------------ISPTFADAYSNMGNTLKEMQ 91
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
+ A+ + + P A N + + Y AL L P+ +
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
Query: 401 AFVRKQM 407
A + +
Sbjct: 152 AHCLQIV 158
Score = 47.5 bits (112), Expect = 7e-06
Identities = 14/86 (16%), Positives = 32/86 (37%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
+ +L N+A ++ + + A+ L L + P A ++ L Y+
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 385 QALDLLPNDQQILKEIAFVRKQMRHH 410
+A+ + P + K+M+
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDV 93
Score = 34.0 bits (77), Expect = 0.11
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
P + +L + N E+ ++ Y +AL++ P +A V +Q
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 59
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 53.9 bits (129), Expect = 4e-08
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
+ I L + P TA NF L + + G R F++Q GD
Sbjct: 184 NIEDCVFRIVLDGYNAPVTAGNFVDLVERHF----------YDGMEIQR-SDGFVVQTGD 232
Query: 81 ITNFNGTGGESIYGPC 96
+
Sbjct: 233 PEGPAEGFIDPSTEKT 248
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 52.3 bits (126), Expect = 7e-08
Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 30/188 (15%)
Query: 244 GCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAV 303
G V +G + + + ++ + + + G Y + A+ +KA+
Sbjct: 13 GLVPRGSHMG-DQNPLKTDKGRD-------EARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64
Query: 304 RYIK------WYN-----QSQSKTQQ--KHFR------SYYTAALLNMAAVQLKFKAYKR 344
I Q++ + + + +R S L N + K Y+
Sbjct: 65 E-IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123
Query: 345 AINLCDDIL--LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 402
A + + P + G + M Q + +E++L L N + E+A
Sbjct: 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183
Query: 403 VRKQMRHH 410
+ + R +
Sbjct: 184 LLYKEREY 191
Score = 50.0 bits (120), Expect = 4e-07
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 14/113 (12%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
N G ++ R +A ++ +A Q + N+ V L+ K
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEAS--------------QDTLYPERSRVFENLGLVSLQMK 155
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+A + L + N + Q Y+ +
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 53.1 bits (127), Expect = 9e-08
Identities = 25/210 (11%), Positives = 63/210 (30%), Gaps = 23/210 (10%)
Query: 225 SRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGN 284
S + + + G + R + E + VL +++ ++ + +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRD 62
Query: 285 EYFKLN-------RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 337
YF+ + + D Q + +K ++ + + Q ++
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKT---LQQMEEVL-GSAQVEAQALM-----LKGKALN 113
Query: 338 KFKAY-KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-- 394
Y A L + +EP V+A + G + + AL N
Sbjct: 114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173
Query: 395 ----QILKEIAFVRKQMRHHLNLEKMTYAR 420
+L+++ ++ + A+
Sbjct: 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203
Score = 42.3 bits (99), Expect = 2e-04
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 18/143 (12%)
Query: 257 SYVEAENDKP--LVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWY 309
+ A + L + V+R ++ + + D+ R+ K AV+ WY
Sbjct: 159 CFSGALTHCKNKVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217
Query: 310 NQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 369
+ Y + N + A + + +N R
Sbjct: 218 ILGNA----------YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267
Query: 370 QVSMNNFEQGLQDYEQALDLLPN 392
++ + L+ + QA L P
Sbjct: 268 HKYEESYGEALEGFSQAAALDPA 290
Score = 36.1 bits (83), Expect = 0.019
Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 13/103 (12%)
Query: 284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343
N A Y +A + + S LN A + ++Y
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKA-------------SSNPDLHLNRATLHKYEESYG 275
Query: 344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
A+ ++P + R + ++ L+ +
Sbjct: 276 EALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 50.6 bits (122), Expect = 2e-07
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 20/149 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 324
+GN Y +A+ ++KA+R +Y + + +
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALR-AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
T A A++ + +P + A + G N E+ L+
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214
Query: 382 DYEQALDLLPNDQQILKEIAFVRKQMRHH 410
++A+D+ P+ L + HH
Sbjct: 215 MLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
Score = 50.2 bits (121), Expect = 3e-07
Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 20/132 (15%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 324
N N +N + A Y KA+ + +Y ++ ++ +
Sbjct: 62 NFANLLSSVNELERALAFYDKALE-LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
+ V +K + K A+ + + N+ +A F+ G + ++ L
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180
Query: 382 DYEQALDLLPND 393
+ + P
Sbjct: 181 QFAAVTEQDPGH 192
Score = 44.8 bits (107), Expect = 2e-05
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 16/113 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ A + KA+ +N A +
Sbjct: 28 QQMGRGSEFGDYEKAAEAFTKAIEE----------------NKEDAIPYINFANLLSSVN 71
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+RA+ D L ++ + A + G V +++ +E+AL +
Sbjct: 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124
Score = 34.4 bits (80), Expect = 0.040
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ + L M RG ++E+ + + +A++ D
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSEF---GDYEKAAEAFTKAIEENKED 56
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 49.3 bits (118), Expect = 5e-07
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 19/116 (16%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
N G +K A + ++ Q H R + N+ + K
Sbjct: 11 NEGVLAADKK-------DWKGA---LDAFS----AVQDPHSRICF-----NIGCMYTILK 51
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
A + + + A F+RG ++ ++D ++AL L +Q I
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107
Score = 48.6 bits (116), Expect = 9e-07
Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 34/144 (23%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
N G Y L M +A++ + +++ + A + + +
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSIN----------------RDKHLAVAYFQRGMLYYQTE 85
Query: 341 AYKRAINLCDD-ILLMEPNNV---------------KALFRRGRAQVSMNNFEQGLQDYE 384
Y AI + ++ + N + + L+ +++ +
Sbjct: 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145
Query: 385 QALDLLPNDQQ--ILKEIAFVRKQ 406
A + + I K + V KQ
Sbjct: 146 LATSMKSEPRHSKIDKAMECVWKQ 169
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 50.0 bits (120), Expect = 6e-07
Identities = 15/136 (11%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
Y + + ++D+ +++ + N + + A+
Sbjct: 122 YEQLGSVNLQADVDIDDL--NVQSEDFFFAAPNEYRECRTLLHAALEM------------ 167
Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
++ + Y A + + P++ + + G + N +
Sbjct: 168 ----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 378 QGLQDYEQALDLLPND 393
+ L Y +ALD+ P
Sbjct: 224 EALDAYNRALDINPGY 239
Score = 46.5 bits (111), Expect = 7e-06
Identities = 12/69 (17%), Positives = 17/69 (24%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
Y + LK A + + P +A G Q +
Sbjct: 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79
Query: 385 QALDLLPND 393
A L P D
Sbjct: 80 HARMLDPKD 88
Score = 43.0 bits (102), Expect = 1e-04
Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G KL + +A ++ + + ++ ++ Q + +
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQA-----------APEREEAWR-----SLGLTQAENE 69
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
AI + +++P ++ + + +N L L P +Q+
Sbjct: 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Score = 35.3 bits (82), Expect = 0.033
Identities = 19/143 (13%), Positives = 32/143 (22%), Gaps = 30/143 (20%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY------- 324
+ G Y N A ++AV W + + +Y
Sbjct: 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236
Query: 325 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR------------GRAQ 370
Y + NMA Y A + M+
Sbjct: 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL 296
Query: 371 VSMNNFEQGLQDYEQALDLLPND 393
MN + Y Q ++ +
Sbjct: 297 NVMNRPDLVELTYAQNVEPFAKE 319
Score = 29.2 bits (66), Expect = 2.9
Identities = 6/54 (11%), Positives = 12/54 (22%), Gaps = 7/54 (12%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
Y N + G + + + N + +E P
Sbjct: 8 TDYPFEAN-------NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 8e-07
Identities = 70/431 (16%), Positives = 123/431 (28%), Gaps = 146/431 (33%)
Query: 59 ALHFTGS----HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYP 114
A F S F++I+P E G +DE P
Sbjct: 25 ASFFIASQLQEQFNKILP-----------------EPTEGFAADDE-------------P 54
Query: 115 GIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIH 174
LV F L + S + S L L F N + +IH
Sbjct: 55 TTPAELV-GKF--LGYVSSLVEPSKVGQFDQVLNLCLT---------EFENCYLEGNDIH 102
Query: 175 --LQRLNVKLRK-IEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRD 231
+L + + ++ K+Y + K+ + L +R
Sbjct: 103 ALAAKLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSAL------------FRA 148
Query: 232 LVKKKKKKNGIFGCVRQGFGVA-------REV--SYVEAENDKPLVLNQMEDVIRTIKNS 282
+ + + IFG G G R++ +Y LV D+I+ S
Sbjct: 149 VGEGNAQLVAIFG----GQGNTDDYFEELRDLYQTY------HVLV----GDLIKF---S 191
Query: 283 GNEYFKLNRM-HDAQRKYKKAVRYIKWYNQSQSK------------------TQQKHFRS 323
+L R DA++ + + + ++W + Q H+
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-- 249
Query: 324 YYTAALLNMAAVQLKFKAYKRAINLC-DDILL------------MEPNNVKA---LFRRG 367
TA LL +L ++Y + ++ + KA LF G
Sbjct: 250 VVTAKLLGFTPGEL--RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 368 -RAQVSMNNFE---QGLQDYEQALDLLP---------NDQQILKEIAFVRKQMRHHLNLE 414
R + N L+D + + +P +Q+ + + HL
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV----NKTNSHLPAG 363
Query: 415 KMTYARMFQNG 425
K + NG
Sbjct: 364 KQVEISLV-NG 373
Score = 38.5 bits (89), Expect = 0.005
Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 53/174 (30%)
Query: 20 GEEKVGRMVIELFKHIVPKTAENFRALCT--GEYGKGKLG-------------KALHFTG 64
G ++ G M ++L+K T++ + + + K G +HF G
Sbjct: 1625 GSQEQG-MGMDLYK-----TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 65 SHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGI---YPKNK-----Y--P 114
RI + + G+ F++ N K + P
Sbjct: 1679 EKGKRIRENYSAMIFE----TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 115 GIYPSLV-KAMFRML---TFTSMVCLF---SLG--SGL----G-LGLAST--LV 152
+ L+ KA F L F SLG + L + + S +V
Sbjct: 1735 ALT--LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Score = 36.2 bits (83), Expect = 0.021
Identities = 48/318 (15%), Positives = 93/318 (29%), Gaps = 151/318 (47%)
Query: 200 QGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYV 259
QG+ E+ G G ++ Y+ A++V +
Sbjct: 1624 QGSQEQ-------------GMGMDL----YKT------------------SKAAQDV-WN 1647
Query: 260 EAENDKPLVLN---QMEDVIR------TIKNSGNE-------YFKL--NRMHDAQRKYKK 301
A D + D++ TI G + Y + + D + K +K
Sbjct: 1648 RA--DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 302 AVRYIKWYNQSQSKTQQKH-----FRSYYT-AALL--NMAAVQ-LKFK------------ 340
+ I N+ + + + +T AL AA + LK K
Sbjct: 1706 IFKEI---NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 341 ---------AYKRAINLCDDILLMEPNNVKALFRRGRA-QVSMNNFEQGLQDY------- 383
+ +++ + + V+ +F RG QV++ E G +Y
Sbjct: 1763 SLGEYAALASLADVMSI-ESL-------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 384 --------EQALDLLP--------------ND----QQI---------------LKEIAF 402
++AL + N QQ L I
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK- 1873
Query: 403 VRK----QMRHHLNLEKM 416
++K +++ L+LE++
Sbjct: 1874 LQKIDIIELQKSLSLEEV 1891
Score = 29.6 bits (66), Expect = 2.4
Identities = 37/236 (15%), Positives = 63/236 (26%), Gaps = 96/236 (40%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKH----------IV-------PKTAENFRALCTGEY 51
+Y+V + G EL + +V + E+F
Sbjct: 247 AHYVVTAKLL------GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR--- 297
Query: 52 GKGKLGKALH---FTGSHFHRIIPQFMIQGGDITNF--NGTGGES----IYGPCFED--- 99
KA+ F G + P + + + N G S I E
Sbjct: 298 ------KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 100 ----ENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSY 155
N L P K + SLV ++V SG +L G
Sbjct: 352 YVNKTNSHL----PAGKQ--VEISLVNG------AKNLVV-----SGP----PQSLYG-- 388
Query: 156 QFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITE 211
LN+ LRK +A + +++ +++ K +
Sbjct: 389 ----------------------LNLTLRKAKAPSGLDQSRIPFSE---RKLKFSNR 419
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 49.6 bits (119), Expect = 8e-07
Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 7/128 (5%)
Query: 273 EDVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQK------HFRSYY 325
E I++ + + KL + + ++ +A ++ Y+ S T K
Sbjct: 4 ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRD 63
Query: 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
+L+ A+ L + + +P +++A G Q + +
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123
Query: 386 ALDLLPND 393
L+L P++
Sbjct: 124 CLELKPDN 131
Score = 47.0 bits (112), Expect = 7e-06
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 20/144 (13%)
Query: 258 YVEAENDKPLVL---NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 314
A DK N + D + G + + +A ++ AV
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAV----------- 91
Query: 315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374
+ KH ++ + Q + + AI+ L ++P+N AL + + +
Sbjct: 92 QQDPKHMEAWQ-----YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146
Query: 375 NFEQGLQDYEQALDLLPNDQQILK 398
Q + L P ++
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVT 170
Score = 41.2 bits (97), Expect = 4e-04
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 18/137 (13%)
Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
Y + K + + + + AVR
Sbjct: 165 YAHLVTPAEEGAGGAG--LGPSKRILGSLLSDSLFLEVKELFLAAVRL------------ 210
Query: 318 QKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
+ + + Y +A++ L + PN+ + G + N
Sbjct: 211 ---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267
Query: 377 EQGLQDYEQALDLLPND 393
E+ + Y +AL+L P
Sbjct: 268 EEAVAAYRRALELQPGY 284
Score = 37.7 bits (88), Expect = 0.005
Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 30/120 (25%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF- 339
G + A + A+ R + A
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALS----------------VRPNDYLLWNKLGATLANGN 265
Query: 340 ------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
AY+RA+ L +P +++ + G + +++ + ++ + +AL++
Sbjct: 266 QSEEAVAAYRRALEL-------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318
Score = 34.2 bits (79), Expect = 0.078
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 27/124 (21%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G N+ +A Y++A+ + Y + N+ +
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALEL----------------QPGYIRSRYNLGISCINLG 299
Query: 341 AYKRAINLCDDILLMEPNNVKALFRR-----------GRAQVSMNNFEQGLQDYEQALDL 389
A++ A+ + L M+ + A + + + L
Sbjct: 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359
Query: 390 LPND 393
L
Sbjct: 360 LLTM 363
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 46.6 bits (111), Expect = 9e-07
Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 298 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357
+A + +Y ++ L + + Y++A + + + P
Sbjct: 5 LEAQA---VPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58
Query: 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
N+ ++ +EQG++ + + +D+ I
Sbjct: 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97
Score = 37.8 bits (88), Expect = 0.001
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
Y++AI L + + G ++ + + + PN Q +
Sbjct: 11 PYYEKAIASG----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66
Query: 400 IA 401
A
Sbjct: 67 YA 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 47.8 bits (115), Expect = 1e-06
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 16/113 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ G Y K + ++++ + ++ +
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSLA----------------DAPDNVKVATVLGLTYVQVQ 90
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
Y A+ L + P N FR G A ++ F++ + ++ AL L PN+
Sbjct: 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Score = 46.3 bits (111), Expect = 3e-06
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 16/113 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ G + K R A ++ ++ L++ +K
Sbjct: 13 DKGISHAKAGRYSQAVMLLEQVYD----------------ADAFDVDVALHLGIAYVKTG 56
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
A R L + L P+NVK G V + ++ + + + P +
Sbjct: 57 AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
Score = 38.2 bits (90), Expect = 0.002
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 383
+ K Y +A+ L + + + +V G A V ++G +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 384 EQALDLLPND 393
E++L P++
Sbjct: 66 ERSLADAPDN 75
Score = 28.6 bits (65), Expect = 3.2
Identities = 9/102 (8%), Positives = 22/102 (21%), Gaps = 20/102 (19%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
G Y ++ + A K + + F S+
Sbjct: 81 VLGLTYVQVQKYDLAVPLLIKVAE-ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 363
+A + ++ A+ ++ L
Sbjct: 140 RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 46.3 bits (111), Expect = 1e-06
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 26/119 (21%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 334
G + ++ ++KA++ + W + ++ + Y A+
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQ-LDPEESKYWLMKGKALYNLER----YEEAV----- 60
Query: 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
Y IN+ +D N + A + E + E L +
Sbjct: 61 -----DCYNYVINVIED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 43.2 bits (103), Expect = 1e-05
Identities = 10/67 (14%), Positives = 30/67 (44%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
+Q Y +I+L + + ++P K +G+A ++ +E+ + Y +
Sbjct: 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67
Query: 388 DLLPNDQ 394
+++ ++
Sbjct: 68 NVIEDEY 74
Score = 36.3 bits (85), Expect = 0.003
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
M N + + G Q N+ + + +E+A+ L P +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 47.2 bits (112), Expect = 1e-06
Identities = 18/150 (12%), Positives = 40/150 (26%), Gaps = 21/150 (14%)
Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
+ D + + + ++ DA ++ Y +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSR 56
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
L + A + Y AI+ +M+ + F + + A
Sbjct: 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116
Query: 388 DLLPN--DQQILKEIAFVRKQMRHHLNLEK 415
+L+ N + L M + L+K
Sbjct: 117 ELIANXPEFXELSTRV---SSMLEAIKLKK 143
Score = 34.5 bits (79), Expect = 0.021
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
+ + + ++ L+ Q +E ++ L D + + R+ M +
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY 71
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 49.0 bits (116), Expect = 1e-06
Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
KL+R+ A+++ KK + + A +++A + + A
Sbjct: 140 LLKLDRLDLARKELKKMQDQ-----------DEDATLTQLATAWVSLA---AGGEKLQDA 185
Query: 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405
+ ++ + L + ++ +E ++ALD + L + + +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 406 QM 407
+
Sbjct: 246 HL 247
Score = 37.4 bits (86), Expect = 0.006
Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 14/155 (9%)
Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLN--RMHDAQRKYKKAVRYIKWYNQSQSK 315
Y+ + + + ++ +++ + + N F L ++ + A+R + +
Sbjct: 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-------Q 126
Query: 316 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 375
+ LL + + L K K+ + +D L + G
Sbjct: 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG-----EK 181
Query: 376 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
+ +++ D +L A
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 48.4 bits (116), Expect = 1e-06
Identities = 20/157 (12%), Positives = 36/157 (22%), Gaps = 33/157 (21%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 322
EY + A + A++ W Q + + FR
Sbjct: 13 QLAMEYMRGQDYRQATASIEDALK-SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71
Query: 323 -SYYTAALLNMAAV---QLK-----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 373
N +L + +A+ P A +G
Sbjct: 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY-----PTPYIANLNKGICSAKQ 126
Query: 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
F +++L P KE+A +
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163
Score = 47.6 bits (114), Expect = 2e-06
Identities = 18/135 (13%), Positives = 30/135 (22%), Gaps = 23/135 (17%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN----------------QSQSKTQQ 318
Y L AQ +++A+ IK N K
Sbjct: 47 VRAEIYQYLKVNDKAQESFRQALS-IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105
Query: 319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 378
A LN K + A L +P A R ++
Sbjct: 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165
Query: 379 GLQDYEQALDLLPND 393
+++ +
Sbjct: 166 ADYYFKKYQSRVEVL 180
Score = 36.1 bits (84), Expect = 0.011
Identities = 13/66 (19%), Positives = 28/66 (42%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
+A ++ + Y++A +D L +P N A R + ++ + + QAL
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69
Query: 388 DLLPND 393
+ P+
Sbjct: 70 SIKPDS 75
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 49.3 bits (118), Expect = 1e-06
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-QSKTQQKHFRSYYTAALLNMAAVQLKF 339
N RM + + Y ++ + +
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT-----GLGVLFHLS 226
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
+ RAI+ + L + P + R G + + E+ ++ Y +AL++ P
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279
Score = 47.0 bits (112), Expect = 6e-06
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343
+ N+ Q + + ++ K + + +LK
Sbjct: 32 RNWISENQEAQNQVTVSASEKGY----YFHTENPFKDWPGAF-----EEGLKRLKEGDLP 82
Query: 344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
I + +L +P + +A G Q N + + ++ L+L PN+
Sbjct: 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132
Score = 44.3 bits (105), Expect = 5e-05
Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G + K + + A+ ++ + Q + +
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAI-----------LQDPGDAEAWQ-----FLGITQAENE 113
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
+ AI L ++PNN+KAL + + ++ + + + + P + +
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169
Score = 37.0 bits (86), Expect = 0.010
Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 295 AQRKYKKAVRYIKWYNQSQSKTQQ--KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
++++A ++ + K Q + + A Q+ A ++ +
Sbjct: 1 GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ F G ++ + + E A+ P D
Sbjct: 61 ---PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98
Score = 29.3 bits (66), Expect = 2.6
Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 18/107 (16%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G +R +A Y +A+ + + + N+ +
Sbjct: 252 RLGATLANGDRSEEAVEAYTRALEI----------------QPGFIRSRYNLGISCINLG 295
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVS--MNNFEQGLQDYEQ 385
AY+ A++ L ++ + A L +Q
Sbjct: 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 49.2 bits (117), Expect = 2e-06
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 335
+ T N Y+ + R+ D Q K + ++ +R
Sbjct: 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS--------SPYRIESPELDCEEGWT 145
Query: 336 QLKF--KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF---EQGLQDYEQALDLL 390
+LK +RA + L +P N + A ++N+ + + QA+ L
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205
Query: 391 PNDQQILKEIAFVRKQMRHHLNLEK 415
P++Q + +A +MR E
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEG 230
Score = 44.2 bits (104), Expect = 6e-05
Identities = 13/142 (9%), Positives = 36/142 (25%), Gaps = 9/142 (6%)
Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQ-- 311
E E L + V ++++ Y + + A KKA+ + Q
Sbjct: 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288
Query: 312 SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQV 371
+ + + + + + A+ N +
Sbjct: 289 CCYRAKVFQVMNLRENGMYGKRKLL---ELIGHAVAHLKKADEANDNLFRVCSILASLHA 345
Query: 372 SMNNFEQGLQDYEQALDLLPND 393
+ +E+ +++
Sbjct: 346 LADQYEEAEYYFQKEFSKELTP 367
Score = 43.4 bits (102), Expect = 1e-04
Identities = 14/132 (10%), Positives = 42/132 (31%), Gaps = 12/132 (9%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
+ +A ++A+R + AL + ++ + +
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRL-----------NPDNQYLKVLLALK-LHKMREEGE 227
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
L ++ L P L + + ++ ++ ++AL+ +PN+ + +I
Sbjct: 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287
Query: 401 AFVRKQMRHHLN 412
+ +
Sbjct: 288 GCCYRAKVFQVM 299
Score = 42.6 bits (100), Expect = 2e-04
Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 12/148 (8%)
Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--- 314
A +++ R + + ++ +A+ ++K Q
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375
Query: 315 ---KTQQKHFRSYYTAALLNMAAVQLK------FKAYKRAINLCDDILLMEPNNVKALFR 365
Q + A + V++ K + + L + +AL
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHV 435
Query: 366 RGRAQVSMNNFEQGLQDYEQALDLLPND 393
Q +Q +D E+ L+
Sbjct: 436 LAFLQELNEKMQQADEDSERGLESGSLI 463
Score = 31.1 bits (70), Expect = 0.79
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 28/139 (20%)
Query: 288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN 347
KL++M + + + K ++ K T L + A + +AI
Sbjct: 218 KLHKMREEGEEEGEG---EKLVEEALEKA------PGVTDVLRSAAKFYRRKDEPDKAIE 268
Query: 348 LCDDILLMEPNNVKALFRRGRA-------------------QVSMNNFEQGLQDYEQALD 388
L L PNN + G + + + ++A +
Sbjct: 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328
Query: 389 LLPNDQQILKEIAFVRKQM 407
N ++ +A +
Sbjct: 329 ANDNLFRVCSILASLHALA 347
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 48.5 bits (116), Expect = 2e-06
Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 22/134 (16%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAV------------RYIKWYNQSQSKTQQKHFRSY---- 324
N G + R AQ Y+ + + ++ + +
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175
Query: 325 -----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
+ + + + +R D + + + F G+ +S+ + +
Sbjct: 176 KEQWGWNIVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234
Query: 380 LQDYEQALDLLPND 393
++ A+ ++
Sbjct: 235 TALFKLAVANNVHN 248
Score = 46.5 bits (111), Expect = 7e-06
Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 28/119 (23%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 334
G Y L A+ + +A+ I+ + TQ + + AA
Sbjct: 48 ERGVLYDSLGLRALARNDFSQALA-IRPDMPEVFNYLGIYLTQAGN----FDAAY----- 97
Query: 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+A+ + L +P A RG A + D PND
Sbjct: 98 -----EAFDSVLEL-------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Score = 38.8 bits (91), Expect = 0.002
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 5/99 (5%)
Query: 295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 354
+ + + Q + L + A N L
Sbjct: 17 PTLQQEVI---LARMEQILASRALT--DDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ P+ + G NF+ + ++ L+L P
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 110
Score = 32.3 bits (74), Expect = 0.23
Identities = 10/100 (10%), Positives = 24/100 (24%), Gaps = 10/100 (10%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
F L + + Q ++ + S + + + L A
Sbjct: 185 EFYLGNISE-QTLMERL---KADATDNTS------LAEHLSETNFYLGKYYLSLGDLDSA 234
Query: 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
L + +N + + L + +Q
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 44.4 bits (105), Expect = 5e-06
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 16/116 (13%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G KL + +A ++ + A ++ Q + +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQ----------------KEPEREEAWRSLGLTQAENE 65
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
AI + +++P ++ + + +N L L P +Q+
Sbjct: 66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 42.8 bits (101), Expect = 2e-05
Identities = 13/74 (17%), Positives = 20/74 (27%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
+ LK A + + EP +A G Q + A
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 388 DLLPNDQQILKEIA 401
L P D + +A
Sbjct: 79 MLDPKDIAVHAALA 92
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 43.5 bits (103), Expect = 1e-05
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
+ + + + A+ L +P A G+ + Q +E
Sbjct: 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77
Query: 385 QALDLLPN--DQQILKEIAFVRKQMRHHLNLE 414
L + DQQ++KE+ +++ LE
Sbjct: 78 SGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109
Score = 35.8 bits (83), Expect = 0.005
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 7/52 (13%)
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
+ + +N+ F G+ F+ L ALD P
Sbjct: 7 RLEAMLAQ-------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 45.0 bits (107), Expect = 3e-05
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
H +++ A + Y ++ + + R + ++ + AI +
Sbjct: 273 HIFLGQFEDAAEH---YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329
Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
L + +A + G A ++ E+ L+ EQ L L
Sbjct: 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 40.4 bits (95), Expect = 8e-04
Identities = 8/105 (7%), Positives = 26/105 (24%), Gaps = 7/105 (6%)
Query: 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348
N ++ + + S L + +
Sbjct: 14 ENVSSLGLGSGGGGTNS---HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAF 70
Query: 349 CDDILLMEPNNVK----ALFRRGRAQVSMNNFEQGLQDYEQALDL 389
+ +++ + G A + ++ + +Q ++ L L
Sbjct: 71 FQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115
Score = 38.1 bits (89), Expect = 0.005
Identities = 13/127 (10%), Positives = 30/127 (23%), Gaps = 18/127 (14%)
Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 328
+ + + G + V + + + + +A
Sbjct: 41 SDGGSSMCLELALEGERLCNAG-------DCRAGVAF---FQAAIQAGTEDL--RTLSAI 88
Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQD 382
+ Y +A+ L + K+ G M F++
Sbjct: 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC 148
Query: 383 YEQALDL 389
E+ L L
Sbjct: 149 CERHLTL 155
Score = 33.8 bits (78), Expect = 0.11
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
+ ++ A+ + + + ++ R+ A N+ + ++ A
Sbjct: 233 YYLLGDFQAAIEH---HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289
Query: 353 LLMEPNNVKALF-RRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEI 400
L + L R AQ + N L ++ A++ I +E+
Sbjct: 290 LALA----VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336
Score = 32.7 bits (75), Expect = 0.23
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 12/136 (8%)
Query: 263 NDKPLV---LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQK 319
D+ L + +V + D + +AV + Y ++ +
Sbjct: 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF---YQENLKLMRDL 216
Query: 320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSM 373
R A N+ ++ AI + L + +A G + + +
Sbjct: 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL 276
Query: 374 NNFEQGLQDYEQALDL 389
FE + Y++ L L
Sbjct: 277 GQFEDAAEHYKRTLAL 292
Score = 30.0 bits (68), Expect = 1.7
Identities = 8/93 (8%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
S + L + + ++ + L G + + G+
Sbjct: 11 ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDG-GSSMCLELALEGERLCNAGDCRAGVA 69
Query: 382 DYEQALDLLPNDQQ----ILKEIAFVRKQMRHH 410
++ A+ D + I ++ + +
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 42.4 bits (101), Expect = 3e-05
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
N GN Y+K +A Y+KA+ + A N+ K
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PRSAEAWYNLGNAYYKQG 49
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
Y AI L ++P + +A + G A ++++ ++ Y++AL+L P
Sbjct: 50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Score = 34.7 bits (81), Expect = 0.016
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ Y++A+ L +P + +A + G A ++++ ++ Y++AL+L P
Sbjct: 22 EYYQKALEL-------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Score = 26.6 bits (60), Expect = 9.9
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 322
N GN Y+K +A Y+KA+ + WYN Q + ++++
Sbjct: 40 NLGNAYYKQGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Query: 323 -SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359
A N+ K Y AI L ++P +
Sbjct: 99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 44.6 bits (106), Expect = 4e-05
Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
+ +++ A Y Y ++ +Q R+ + ++ + Y++AI+
Sbjct: 237 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406
L + +A + G A ++ N +Q + E+ L +I +E+ +
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREVGDKSGE 346
Query: 407 MRHHLNL 413
+ LNL
Sbjct: 347 LTARLNL 353
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 18/124 (14%)
Query: 272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN 331
ME + G K + V + + + + +A
Sbjct: 5 MEASCLELALEGERLCKSG-------DCRAGVSF---FEAAVQVGTEDL--KTLSAIYSQ 52
Query: 332 MAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
+ Y +A+ L + + KA G + NF++ + ++
Sbjct: 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 386 ALDL 389
LD+
Sbjct: 113 HLDI 116
Score = 34.6 bits (80), Expect = 0.051
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 9/116 (7%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
+ + + AV + Y ++ S R+ A N+
Sbjct: 144 FGCPGPQDVGEFPEEVRDALQAAVDF---YEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200
Query: 340 KAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
++ A+ + LL+ + +A G A + + FE + Y++ L L
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256
Score = 29.6 bits (67), Expect = 2.3
Identities = 8/65 (12%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-KAYKRAINLCDD 351
+ A + +A+ + + +++ +S A LN++ +Q+ +Y ++ +
Sbjct: 317 YTALGNHDQAMHF---AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373
Query: 352 ILLME 356
++
Sbjct: 374 NTEID 378
Score = 28.4 bits (64), Expect = 5.4
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395
L G + G+ +E A+ + D +
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK 44
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 43.7 bits (103), Expect = 7e-05
Identities = 13/156 (8%), Positives = 40/156 (25%), Gaps = 35/156 (22%)
Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY----------------------- 305
+ + + +G L RM +A + +KA
Sbjct: 69 NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128
Query: 306 ------IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL------ 353
+ Y Q+ + + + + + + ++ + + A
Sbjct: 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188
Query: 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
P K + Q+ ++ + ++ +
Sbjct: 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Score = 33.3 bits (76), Expect = 0.12
Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 8/137 (5%)
Query: 284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343
+EY K ++ ++A Y Q + A + +
Sbjct: 37 SEYAKAAVAFKNAKQLEQAKDA---YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93
Query: 344 RAINLCDDIL-----LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
A+ + P+ R + + + + Y+QA + N++++ +
Sbjct: 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQ 153
Query: 399 EIAFVRKQMRHHLNLEK 415
+ K R + +K
Sbjct: 154 AAELIGKASRLLVRQQK 170
Score = 32.2 bits (73), Expect = 0.27
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA-LLNMAAVQLKF-KAYKRAINLCDDI 352
A +K +A +I + + K Y +AA AAV K K ++A +
Sbjct: 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 412
NN ++LF +A + LQ +A+ + + E
Sbjct: 63 AEAHANN-RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121
Query: 413 LEKM 416
K+
Sbjct: 122 AGKL 125
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 42.1 bits (100), Expect = 1e-04
Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 17/112 (15%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
G Y L A+ K+A+ ++ + +A + L
Sbjct: 123 QRGLVYALLGERDKAEASLKQALA-LEDTPE----------------IRSALAELYLSMG 165
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
A+ L P ++ R A + E+ + +
Sbjct: 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 42.1 bits (100), Expect = 1e-04
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 17/118 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 334
KL ++ A K V + S++ Y A
Sbjct: 44 WLARTQLKLGLVNPALENGKTLVA-RTPRYLGGYMVLSEA----------YVALYRQAED 92
Query: 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
+ ++A+++ D + P +RG + ++ +QAL L
Sbjct: 93 RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
L + Y A+ L + L P + +AL+ R Q+ + L++ + +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 388 DLLPND 393
P
Sbjct: 67 ARTPRY 72
Score = 27.5 bits (62), Expect = 6.9
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
+ R G ++ ++ L +E+AL P D
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 40.5 bits (96), Expect = 1e-04
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
N GN Y+K +A Y+KA+ + A N+ K
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PNNAEAWYNLGNAYYKQG 57
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
Y AI L ++PNN +A + G A ++++ ++ Y++AL+L PN
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 34.3 bits (80), Expect = 0.021
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
A N+ K Y AI L ++PNN +A + G A ++++ ++ Y+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 385 QALDLLPND 393
+AL+L PN+
Sbjct: 68 KALELDPNN 76
Score = 27.0 bits (61), Expect = 5.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
N+ +A + G A ++++ ++ Y++AL+L PN
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 42.6 bits (101), Expect = 1e-04
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
+ +++ A Y Y ++ +Q R+ + ++ + Y++AI+
Sbjct: 233 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
L + +A + G A ++ N +Q + E+ L++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
Score = 36.8 bits (86), Expect = 0.009
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 14/110 (12%)
Query: 289 LNRM---HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
L + V + + + + +A + Y +A
Sbjct: 8 LALEGERLCKSGDCRAGVSF---FEAAVQVGTEDL--KTLSAIYSQLGNAYFYLHDYAKA 62
Query: 346 INLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
+ L + + KA G + NF++ + ++ LD+
Sbjct: 63 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112
Score = 33.8 bits (78), Expect = 0.082
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
D + + AV Y ++ S R+ A N+ ++ A
Sbjct: 146 QDTGEFPEDVRNALQAAVDL---YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
Query: 346 INLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
+ + LL+ + +A G A + + FE + Y++ L L
Sbjct: 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252
Score = 33.8 bits (78), Expect = 0.10
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLME----PNNVKALFRRGRAQVSMNNFEQGLQDY 383
L K + ++ + + + + G A ++++ + L+ +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 384 EQALDL 389
L L
Sbjct: 67 HHDLTL 72
Score = 31.8 bits (73), Expect = 0.38
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
H ++ AV + Q ++ ++ A N+ + ++ A
Sbjct: 193 HYLLGNFRDAVIA---HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 353 LLMEPNNVKALF-RRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEI 400
LL+ + L R AQ + N LQDYE+A+D I +E+
Sbjct: 250 LLLA----RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296
Score = 31.8 bits (73), Expect = 0.39
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 29/123 (23%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV----------------- 335
+ +A I + +++ + + AL N+ V
Sbjct: 93 LKVLGNFDEA---IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149
Query: 336 ---QLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
+ A + A++L ++ L + +A G + NF + +EQ
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209
Query: 387 LDL 389
L +
Sbjct: 210 LLI 212
Score = 30.7 bits (70), Expect = 0.98
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
+ L + + Y+KA+ Y + + + Q+ R A ++ + +A
Sbjct: 266 CYSLGNTYTLLQDYEKAIDY---HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322
Query: 346 INLC 349
++
Sbjct: 323 MHFA 326
Score = 29.9 bits (68), Expect = 1.5
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
Y +L + Y KA+ Y ++ + + + A N+ + A
Sbjct: 46 YSQLGNAYFYLHDYAKALEY---HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102
Query: 346 INLC 349
I C
Sbjct: 103 IVCC 106
Score = 28.8 bits (65), Expect = 4.0
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395
L G + G+ +E A+ + D +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK 40
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQAL 387
L + + A+ ++ L EP +A + G A + ++++ L +Y+ A+
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 388 DLLPND 393
+L P+
Sbjct: 63 ELNPDS 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 42.4 bits (99), Expect = 2e-04
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 20/147 (13%)
Query: 258 YVEAENDKPLVLNQMEDVIRTI--------KNSGNEYFKLNR---MHDAQRKYKKAVRYI 306
+ + + VL + E R N+ N R + Q+ + +
Sbjct: 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE---M 152
Query: 307 KWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR 366
+ + Q K+++ ++ + + + + + DIL + N A R
Sbjct: 153 NYITAI-IEEQPKNYQVWH-----HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206
Query: 367 GRAQVSMNNFEQGLQDYEQALDLLPND 393
++ LQ +Q L +
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 37.7 bits (87), Expect = 0.006
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDY 383
+ AV + + +RA L D + + N R S+ + + +
Sbjct: 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 155
Query: 384 EQALDLLPNDQQI 396
++ P + Q+
Sbjct: 156 TAIIEEQPKNYQV 168
Score = 33.1 bits (75), Expect = 0.14
Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF-- 376
K++ ++ + V +FK + + D +L + N +R + +
Sbjct: 198 KNYHAWQ-----HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252
Query: 377 ----EQGLQDYEQALDLLPNDQ 394
E+ +Q + + L+P+++
Sbjct: 253 RAVLEREVQYTLEMIKLVPHNE 274
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 40.3 bits (94), Expect = 4e-04
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
LL + L+ + +A+N+ + + + + FE ++
Sbjct: 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELA----QEL 62
Query: 387 LDLLPNDQQ 395
L +P + Q
Sbjct: 63 LATIPLEYQ 71
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 38.4 bits (90), Expect = 5e-04
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
+A LK RA+ L ++++ +P+ V + G+ ++ + + Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 385 QALDLLPN--DQQILKEIAFVRKQM----RHH 410
Q +++ Q+ L E+ + + HH
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
Score = 31.1 bits (71), Expect = 0.16
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
+P + + + + +N + L +E+ ++ P+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD 39
Score = 30.3 bits (69), Expect = 0.27
Identities = 8/106 (7%), Positives = 25/106 (23%), Gaps = 21/106 (19%)
Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
E+ K + A +++ V Y ++ + +
Sbjct: 12 ALAQEHLKHDNASRALALFEELVE----------------TDPDYVGTYYHLGKLYERLD 55
Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
AI+ + + + + + + + E
Sbjct: 56 RTDDAIDTYAQGIEVAREEGTQ-----KDLSELQDAKLKAEGLEHH 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 7e-04
Identities = 54/406 (13%), Positives = 113/406 (27%), Gaps = 120/406 (29%)
Query: 66 HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIY--PSLVKA 123
+ I+ F + + NF+ C + ++ K I K + I V
Sbjct: 17 QYKDILSVF--EDAFVDNFD----------CKDVQDM-PKSILSKEEIDHIIMSKDAVSG 63
Query: 124 MFRMLTF-----TSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT-NNCEIHLQR 177
R+ MV F + L + L+ + + T L
Sbjct: 64 TLRLFWTLLSKQEEMVQKF-VEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 178 LNVKLRKIEADLSILEAKHYYNQGALEKK--RGITEHKKKLETGRGKEI-SRKQYRDLVK 234
N K ++S L+ Q LE + + + G GK +
Sbjct: 122 DNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKV 176
Query: 235 KKKKKNGIF----GCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLN 290
+ K IF N VL ++ + ++++
Sbjct: 177 QCKMDFKIFWLNLKNC----------------NSPETVLEMLQKL----------LYQID 210
Query: 291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 350
++ + ++ + + + LK K Y+ + +
Sbjct: 211 PNWTSRSDHSSNIKL----RIHSIQAELRRL---------------LKSKPYENCLLVLL 251
Query: 351 D---------------ILLM--EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL--- 390
+ ILL L +S+++ L ++ LL
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKY 310
Query: 391 ----PND--QQILK----EIAFVRKQMRH---------HLNLEKMT 417
P D +++L ++ + + +R H+N +K+T
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Score = 39.1 bits (90), Expect = 0.003
Identities = 41/274 (14%), Positives = 83/274 (30%), Gaps = 93/274 (33%)
Query: 163 FLNTFTNNCEIHLQRLNV-KLRK-IEADLSIL---EAKHYYNQGAL-------------- 203
L T+ N + +N KL IE+ L++L E + +++ ++
Sbjct: 340 GLATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 204 ---EKKRGITE------HKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAR 254
+ + HK L + KE S + + K K
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKL-------------- 439
Query: 255 EVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWY---- 309
EN+ + I +++ + + D+ + Y +
Sbjct: 440 -------ENEY-----ALHRSIV-------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 310 ----NQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365
+ T FR + L+ ++ K + A N IL N +
Sbjct: 481 LKNIEHPERMTL---FRMVF----LDFRFLEQKIRHDSTAWNASGSIL-----NTLQQLK 528
Query: 366 RGRAQVSMNN--FEQGLQDYEQALDLLPNDQQIL 397
+ + N+ +E+ + LD LP ++ L
Sbjct: 529 FYKPYICDNDPKYERLVNAI---LDFLPKIEENL 559
Score = 35.2 bits (80), Expect = 0.045
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 41/116 (35%)
Query: 349 CDDILLMEPNNVKALFR-------RGRAQVSMNNF-EQGLQD------------------ 382
D I+ M + V R + V F E+ L+
Sbjct: 51 IDHII-MSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 383 ----YEQALDLLPNDQQILKEIAFVRKQMRHHLN--LEKMTYAR------MFQNGK 426
Y + D L ND Q+ + R Q L L ++ A+ + +GK
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 40.6 bits (95), Expect = 8e-04
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 12/145 (8%)
Query: 255 EVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNR--MHDAQRKYKKAVRYIKWYNQS 312
E +E + +L +++ + YF R QR+Y A IK++ ++
Sbjct: 73 EKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSA---IKFFKKA 129
Query: 313 QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFR 365
+SK R M+ K +++ + + ++
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 366 RGRAQVSMNNFEQGLQDYEQALDLL 390
+ + +E + +++A +
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMA 214
Score = 34.8 bits (80), Expect = 0.048
Identities = 13/132 (9%), Positives = 45/132 (34%), Gaps = 10/132 (7%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
+ + ++Q +Y+ A+ Y + ++ + ++ + A + + K +A
Sbjct: 227 LYNIGLCKNSQSQYEDAIPY---FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283
Query: 346 INLCDDILLM----EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD---LLPNDQQILK 398
+ + F ++ E+ +Q + L+ L + +
Sbjct: 284 HEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI 343
Query: 399 EIAFVRKQMRHH 410
++A + ++
Sbjct: 344 DVAKYYHERKNF 355
Score = 33.6 bits (77), Expect = 0.100
Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
N + + + ++KL K KA +++++ + +Q+ Y +
Sbjct: 256 ESNILPSLPQAYFLITQIHYKLG-------KIDKA---HEYHSKGMAYSQKAGDVIYLSE 305
Query: 328 A--LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
L ++ +A + + + +L + + NF++ + +
Sbjct: 306 FEFLKSLYLSGPDEEAIQGFFDFLESKMLY-ADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 386 ALDLLPNDQQILKE 399
+ Q I
Sbjct: 365 VEQV---RQLIQGG 375
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 16/131 (12%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDD 351
+ A R + + + + +A V L F A +
Sbjct: 76 ERMAGNWDAARRC---FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 352 ILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL------PNDQQILKE 399
L+ + A G N + Q + +A D+ +++
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTR 192
Query: 400 IAFVRKQMRHH 410
+ + HH
Sbjct: 193 LNGLEHHHHHH 203
Score = 29.6 bits (67), Expect = 1.5
Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 13/118 (11%)
Query: 306 IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM------EPNN 359
+ + + + A + V + A +
Sbjct: 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE 65
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDL---LPNDQ----QILKEIAFVRKQMRHH 410
+AL + G + N++ + + + +L LP D E+A V
Sbjct: 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 37.9 bits (89), Expect = 0.002
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
+ +++ A Y Y ++ +Q R+ + ++ + Y++AI+
Sbjct: 59 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
L + +A + G A ++ N +Q + E+ L++
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
Score = 35.6 bits (83), Expect = 0.013
Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
H ++ AV + Q ++ ++ A N+ + ++ A
Sbjct: 19 HYLLGNFRDAVIA---HEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75
Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406
LL+ ++ + G + ++E+ + + + L I +E+ +
Sbjct: 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-------AIAQELKDRIGE 128
Query: 407 MRHHLNL 413
R +L
Sbjct: 129 GRACWSL 135
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 37.1 bits (85), Expect = 0.003
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 328 ALLNMAAVQL---KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM----------- 373
LL ++ + + AI ++ LL++P +A++ G A S
Sbjct: 45 VLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK 104
Query: 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 415
+NF+ Q ++QA+D P++ LK + K + H K
Sbjct: 105 HNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK 146
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 38.3 bits (89), Expect = 0.004
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 269 LNQMEDVIRTIKNSGNEYFKLNR--MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT 326
L +E + + Y R Q++Y +A+ Y Y +++ +
Sbjct: 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY---YREAEKELPFVSDDIEKA 141
Query: 327 AALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
+A K ++ + + L +++LF ++++
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201
Query: 380 LQDYEQALDLL 390
L E AL+L
Sbjct: 202 LPHLEAALELA 212
Score = 37.1 bits (86), Expect = 0.008
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
+D + Y KA+ + + + +LLN+A + + A+
Sbjct: 192 YDDFKHYDKALPH---LEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 353 LLME-----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
+ K LF ++ Q E+ LD
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Score = 34.4 bits (79), Expect = 0.065
Identities = 15/149 (10%), Positives = 42/149 (28%), Gaps = 18/149 (12%)
Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 328
+ + ++ N N Y + + AV + + ++ +K ++
Sbjct: 215 IQNDRFIAISLLNIANSYDRSG-------DDQMAVEH---FQKA-AKVSREKVPDLLPKV 263
Query: 329 LLNMAAVQLKFKAYKRAINLCDDIL-LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
L ++ K ++A ++ L + + K ++ + L
Sbjct: 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323
Query: 388 DLL------PNDQQILKEIAFVRKQMRHH 410
+ + A V + H
Sbjct: 324 SYFEKKNLHAYIEACARSAAAVFESSCHF 352
Score = 33.6 bits (77), Expect = 0.12
Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 16/132 (12%)
Query: 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA- 328
+ + + + K + +KA ++ + + + Y
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAG-------QTQKA---FQFIEEGLDHITARSHKFYKELFL 304
Query: 329 -LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
L + + + ++ + L S +FEQ Y + L
Sbjct: 305 FLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
Query: 388 DLLPNDQQILKE 399
+ ILK
Sbjct: 364 KA---QEDILKG 372
Score = 28.6 bits (64), Expect = 3.8
Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 9/140 (6%)
Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-KTQQKHFRSYYTA 327
+ + +D++ + + + + Y + ++ + + YY
Sbjct: 45 MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY-- 102
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQ 381
+L + K Y AI + + + F+ A M +
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162
Query: 382 DYEQALDLLPNDQQILKEIA 401
QALD+ N
Sbjct: 163 HILQALDIYQNHPLYSIRTI 182
Score = 27.9 bits (62), Expect = 7.3
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 5/122 (4%)
Query: 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH---FRSYYTAALLNM 332
+ N + + + DA+ + + I+ + Q FR L
Sbjct: 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEP 71
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKA--LFRRGRAQVSMNNFEQGLQDYEQALDLL 390
+ + +K LF RG + + + + Y +A L
Sbjct: 72 GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131
Query: 391 PN 392
P
Sbjct: 132 PF 133
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 33.7 bits (77), Expect = 0.018
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 326 TAALLNMAAVQLKFKAYK----RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
TA L A L + + L + L +EP N AL ++F
Sbjct: 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIA-----NDHFISF-- 57
Query: 382 DYEQA-------LDLLPND---QQILKEIAFVRKQM 407
+++A LD + I++ I +K M
Sbjct: 58 RFQEAIDTWVLLLDSNDPNLDRVTIIESINKAKKLM 93
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 35.8 bits (82), Expect = 0.021
Identities = 10/98 (10%), Positives = 24/98 (24%), Gaps = 5/98 (5%)
Query: 300 KKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359
K+ + + + + Y A L + + + +E +
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQI----KAVSALVKGKTDESYQAINTGIDLEMS- 309
Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
G+ + Y A +L P +
Sbjct: 310 WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
Score = 29.3 bits (65), Expect = 2.3
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 357 PNNVKAL--FRRGRA---QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 411
P+ L F + + + + + + P E A V
Sbjct: 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH 250
Query: 412 NLEKMTYARMFQN 424
L++ A +
Sbjct: 251 PLDEKQLAALNTE 263
Score = 28.9 bits (64), Expect = 3.0
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF--------EQGLQDYEQAL 387
K+ RA L +I+ P A + + ++ + + +
Sbjct: 209 HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268
Query: 388 DLLPNDQQ 395
L +
Sbjct: 269 TLPELNNL 276
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 33.1 bits (77), Expect = 0.024
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
+ Y++A+ L +PNN +A + G A ++++ ++ Y++AL+L PN
Sbjct: 30 EYYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Score = 27.0 bits (61), Expect = 3.4
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
N+ +A + G A ++++ ++ Y++AL+L PN
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 41
>3p8c_E Probable protein brick1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 75
Score = 32.7 bits (74), Expect = 0.031
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 161 VSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAK 195
FLN+F +C L LN KL +E + +EA+
Sbjct: 33 ADFLNSFDMSCRSRLATLNEKLTALERRIEYIEAR 67
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 35.0 bits (80), Expect = 0.034
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 10/110 (9%)
Query: 290 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL- 348
+ + Y KA+ Y + Q + + A ++ Y A ++
Sbjct: 125 EILENDLHDYAKAIDC---YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181
Query: 349 ------CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
L + + ++G Q++ + + ++ PN
Sbjct: 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231
Score = 32.3 bits (73), Expect = 0.25
Identities = 15/154 (9%), Positives = 43/154 (27%), Gaps = 17/154 (11%)
Query: 273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM 332
E+ + Y ++ A + KA + ++ ++ +
Sbjct: 34 EEAADLCVQAATIYRLRKELNLAGDSFLKA---ADYQKKAGNE-------DEAGNTYVEA 83
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVS-MNNFEQGLQDYEQ 385
A++ ++ + + + F G + ++++ + + YE
Sbjct: 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143
Query: 386 ALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA 419
A + DQ + K + A
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the
SCAR-WAVE complex, ABI, structural protein; 1.50A
{Dictyostelium discoideum}
Length = 73
Score = 32.3 bits (73), Expect = 0.035
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 161 VSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAK 195
V FLN F + L LN KL ++ + LEA
Sbjct: 33 VEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEAT 67
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 29.8 bits (67), Expect = 0.81
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 306 IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 363
I + K ++ R Y + +A + K Y++A+ +L EP N +A
Sbjct: 55 IVLLEELLPKGSKEEQRDY----VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 29.3 bits (66), Expect = 0.98
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 295 AQRKYKKAVRYIKWYNQSQSKTQQKHF-----RSYYTA-ALLNMAAVQLKFKAYKRAINL 348
A+ Y A +K + F YT AL + + ++ A
Sbjct: 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQ 61
Query: 349 CDDILLMEPNNVK---ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
D++ P + K L + G +Q + Q +Q P
Sbjct: 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease;
HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB:
2y50_A* 2y6i_A*
Length = 785
Score = 30.6 bits (68), Expect = 1.0
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQ-RKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 328
N+++ +I ++ SG Y + + +A Y+ +YN S ++F+ A
Sbjct: 67 NRVQAIINALQESGRTYTANDMKGIETFTEVLRAGFYLGYYNDGLSYLNDRNFQDKCIPA 126
Query: 329 LLNMAA 334
++ +
Sbjct: 127 MIAIQK 132
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 29.4 bits (66), Expect = 1.2
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 363
L + K Y A D + E NN +
Sbjct: 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 30.3 bits (68), Expect = 1.3
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 8/109 (7%)
Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKR 344
L + A+ A N+ ++ + S + + A
Sbjct: 177 LAMLIQCSLARGDLDNARS---QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233
Query: 345 AINLCDDILLME----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
A N E RAQ+ + FE E+ +
Sbjct: 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282
Score = 29.2 bits (65), Expect = 2.9
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 368 RAQV--SMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
RAQV + N ++ + + AL+ LP + +A
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA 55
Score = 28.8 bits (64), Expect = 3.2
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 327 AALLNMAAVQLKFKAYKRAINLCDDILLME------PNNVKALFRRGRAQVSMNNFEQGL 380
A + V R++ L M + +L ++ + +
Sbjct: 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 113
Query: 381 QDYEQALDLLP 391
+ E+A L+
Sbjct: 114 ETQEKAFQLIN 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 30.1 bits (67), Expect = 1.3
Identities = 15/236 (6%), Positives = 63/236 (26%), Gaps = 19/236 (8%)
Query: 175 LQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVK 234
+L + + L + + + K++ E+ +++Y +
Sbjct: 53 AAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112
Query: 235 KKKKKNGIFGCVRQGFGVARE-VSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMH 293
+ + + ++ ++ L + + N Y + +
Sbjct: 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLK 172
Query: 294 DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 353
+++ ++ ++ + N A Y+ ++ + +
Sbjct: 173 KGIDLFEQILKQLE---------ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 354 LMEPNN------VKALFRRGRAQVSM-NNFEQGLQDYEQALDL--LPNDQQILKEI 400
+ + ++RG + + Y++A + + +
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEAL 279
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 29.0 bits (65), Expect = 1.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 338 KFKAYKRAINLCDDILLMEPNNVKAL 363
+ K Y++A+ +L EP N +A
Sbjct: 86 RLKEYEKALKYVRGLLQTEPQNNQAK 111
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 28.7 bits (64), Expect = 1.6
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 338 KFKAYKRAINLCDDILLMEPNNVKAL 363
K Y A D + E NN +
Sbjct: 90 KLGEYSMAKRYVDTLFEHERNNKQVG 115
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.3
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 205 KKRGITEHKKKLETGRGKEISRK-------QYRDLVKKKKKKN 240
++ + E +E ++K + + V+K K N
Sbjct: 99 QELDAASKVMEQEW---REKAKKDLEEWNQRQSEQVEKNKINN 138
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine,
glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis
orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5
c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A*
2vzu_A*
Length = 1032
Score = 29.3 bits (65), Expect = 3.0
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 248 QGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNS--------GNEYFKLNRMHDAQRKY 299
+G E E+D P+ M +++ G+++ R+
Sbjct: 424 EGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHPSVISFHIGSDFAPDRRIEQGYLDA 483
Query: 300 KKAVRYIKWYNQS 312
KA ++ +
Sbjct: 484 MKAADFLLPVIPA 496
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA,
protein degradation, structural genomics, NPPSFA; HET:
MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB:
2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A*
2z3p_A*
Length = 256
Score = 28.5 bits (63), Expect = 3.7
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 209 ITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC 245
+ +H L G EI R+ Y + + + +
Sbjct: 207 LNDHTASL--G-ACEIPRRDYLNYLNQMRLGRLPNNF 240
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 28.4 bits (63), Expect = 4.9
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 241 GIFGCVRQGFGVAREVSYVEAENDKPL 267
G+ CV + + ++ D+ +
Sbjct: 446 GLPDCVASAKTMIESIELEQSHTDESV 472
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta
sandwich, duplication of A half-domain; 2.01A
{Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Length = 221
Score = 28.0 bits (63), Expect = 5.6
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCT 48
Y+ F + S+ +EKVG EL + FRA+
Sbjct: 141 YLSF-NASLSKEKVGTFDTELVEEF-------FRAVVI 170
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide,
manganese, histidine biosynthesis, lyase; 3.00A
{Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Length = 207
Score = 27.5 bits (62), Expect = 6.5
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 17/64 (26%)
Query: 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH---FTGSHF 67
Y+ + ++ I ++VG +L +H F++L G LH G +
Sbjct: 123 YLGY-NLEIPTQRVGTYDTQLVEHF-------FQSLVNT------SGMTLHIRQLAGENS 168
Query: 68 HRII 71
H II
Sbjct: 169 HHII 172
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET:
MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 28.1 bits (63), Expect = 6.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 17 VSIGEEKVGRMVIELFKHIVPKT 39
VS +E V + + K I PK
Sbjct: 12 VSASKEDVHNAIKNIDKGIFPKA 34
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases,
histidine biosynthesis, LEFT-handed B-A-B CROS motif,
gene duplication; 2.30A {Filobasidiella neoformans}
SCOP: d.14.1.9 d.14.1.9
Length = 202
Score = 27.5 bits (62), Expect = 7.5
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH---FTGSHF 67
Y + + EKVG + E+ H+ ++ G LH G +
Sbjct: 121 YFMC-HLPFTREKVGDLSTEMVSHL-------LQSFAFA------AGVTLHIDSIRGENN 166
Query: 68 HRII 71
H I
Sbjct: 167 HHIA 170
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 27.7 bits (61), Expect = 9.0
Identities = 14/122 (11%), Positives = 36/122 (29%), Gaps = 7/122 (5%)
Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
L + E++ + E +R+ Q ++ ++
Sbjct: 199 ALERAEELCSQVNEGVREKENSDRLEWIQAH-------VQCEGLAEQLIFNSLTNCLGPR 251
Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
LL+ + + L +D LL+ + G ++ + + Y+ +
Sbjct: 252 KLLHSGKLYKTKSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPI 311
Query: 388 DL 389
L
Sbjct: 312 FL 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.400
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,520,461
Number of extensions: 398174
Number of successful extensions: 1644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 347
Length of query: 426
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,021,377
Effective search space: 1327054410
Effective search space used: 1327054410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)