BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6103
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NAF|A Chain A, Structure Of The Intracellular Gating Ring From The Human
High- Conductance Ca2+ Gated K+ Channel (Bk Channel)
Length = 798
Score = 182 bits (461), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 120 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 179
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 180 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 227
>pdb|3MT5|A Chain A, Crystal Structure Of The Human Bk Gating Apparatus
Length = 726
Score = 181 bits (460), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 70 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 129
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 130 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 177
>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|B Chain B, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|C Chain C, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|D Chain D, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|E Chain E, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|F Chain F, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|G Chain G, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|H Chain H, Open Structure Of The Bk Channel Gating Ring
Length = 696
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 93/108 (86%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 70 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 129
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELK GFIAQSCLA G STM+ANLF+MRS+
Sbjct: 130 LLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGLSTMLANLFSMRSY 177
>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring
pdb|4HPF|B Chain B, Structure Of The Human Slo3 Gating Ring
Length = 722
Score = 136 bits (343), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 23 VHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82
V A+ACL++AN C D AED +NIMRV+SIKNY R+IIQ++Q HNK YL IPSW
Sbjct: 77 VESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSW 136
Query: 83 DWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFK 124
+W GD++IC AELKLGFIAQ CL PG T + +LF ++ K
Sbjct: 137 NWDTGDNIICFAELKLGFIAQGCLVPGLCTFLTSLFVEQNKK 178
>pdb|2CRV|A Chain A, Solution Structure Of C-Terminal Domain Of Mitochondrial
Translational Initiationfactor 2
Length = 120
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 51 VISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGF 110
+ S+K++ DDI VI M + L+ ++K GD VIC E K+ ++ PGF
Sbjct: 60 LTSLKHHKDDISVIKTGM---DCGLSLDEEKVEFKPGDQVICYEENKV--PTKTSWDPGF 114
Query: 111 S 111
S
Sbjct: 115 S 115
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 54 IKNYS--DDIRVIIQLMQYHNKAYLLNIPSWDWK---QGDDVICLAELKLGFIAQSCLAP 108
+KNY+ D + II + + + LN+PS DW GD + E LG + + P
Sbjct: 856 LKNYANHDTWKNIIVMYNPNKTSQTLNLPSGDWTIVGLGDQI---GEKSLGHVMGNVQVP 912
Query: 109 GFSTMM 114
ST++
Sbjct: 913 AISTLI 918
>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme
pdb|1PRX|B Chain B, Horf6 A Novel Human Peroxidase Enzyme
Length = 224
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 55 KNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96
+N+ + +RV+I L K + DWK GD V+ L +
Sbjct: 155 RNFDEILRVVISLQLTAEKRVATPV---DWKDGDSVMVLPTI 193
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 54 IKNYSDDIRVIIQLMQYHN--KAYLLNIPSWDWKQGDDV 90
I++ +DI+ II++ + N +AY+ W WK + V
Sbjct: 839 IRSVMEDIKEIIEVAKIENAKRAYIYTAEDWKWKVAEVV 877
>pdb|3EC7|A Chain A, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|B Chain B, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|C Chain C, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|D Chain D, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|E Chain E, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|F Chain F, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|G Chain G, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|H Chain H, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
Length = 357
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 33 ANKY--CQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYL 76
ANKY C+ P A AA+ RVI + + V I + ++K Y+
Sbjct: 110 ANKYVFCEKPLAVTAADCQRVIEAEQKNGKRXVQIGFXRRYDKGYV 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,599,577
Number of Sequences: 62578
Number of extensions: 125133
Number of successful extensions: 297
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 10
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)