BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6103
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03720|SLO_DROME Calcium-activated potassium channel slowpoke OS=Drosophila
melanogaster GN=slo PE=1 SV=3
Length = 1200
Score = 226 bits (577), Expect = 2e-59, Method: Composition-based stats.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 22 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 429 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 488
Query: 82 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 489 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 532
>sp|Q95V25|SLO1_CAEEL Calcium-activated potassium channel slo-1 OS=Caenorhabditis elegans
GN=slo-1 PE=1 SV=2
Length = 1140
Score = 209 bits (531), Expect = 5e-54, Method: Composition-based stats.
Identities = 96/107 (89%), Positives = 101/107 (94%)
Query: 19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
S K+ +ADACLVLANKY +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct: 441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500
Query: 79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547
>sp|Q62976|KCMA1_RAT Calcium-activated potassium channel subunit alpha-1 OS=Rattus
norvegicus GN=Kcnma1 PE=1 SV=3
Length = 1209
Score = 186 bits (471), Expect = 5e-47, Method: Composition-based stats.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 475 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 534
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 535 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 582
>sp|Q08460|KCMA1_MOUSE Calcium-activated potassium channel subunit alpha-1 OS=Mus musculus
GN=Kcnma1 PE=1 SV=2
Length = 1209
Score = 186 bits (471), Expect = 5e-47, Method: Composition-based stats.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 474 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 533
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 534 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 581
>sp|Q8AYS8|KCMA1_CHICK Calcium-activated potassium channel subunit alpha-1 OS=Gallus
gallus GN=KCNMA1 PE=1 SV=2
Length = 1137
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 95/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 433 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 492
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLAPG STM+ANLF+MRSF
Sbjct: 493 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAPGLSTMLANLFSMRSF 540
>sp|Q28204|KCMA1_BOVIN Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus
GN=KCNMA1 PE=1 SV=2
Length = 1166
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 462 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 521
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 522 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 569
>sp|O18866|KCMA1_PIG Calcium-activated potassium channel subunit alpha-1 (Fragment)
OS=Sus scrofa GN=KCNMA1 PE=2 SV=2
Length = 1152
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 448 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 507
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 508 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 555
>sp|O18867|KCMA1_MACMU Calcium-activated potassium channel subunit alpha-1 (Fragment)
OS=Macaca mulatta GN=KCNMA1 PE=2 SV=1
Length = 1151
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 447 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 506
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 507 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 554
>sp|Q12791|KCMA1_HUMAN Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens
GN=KCNMA1 PE=1 SV=2
Length = 1236
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 474 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 533
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 534 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 581
>sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit alpha-1 OS=Oryctolagus
cuniculus GN=KCNMA1 PE=2 SV=1
Length = 1179
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 475 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 534
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 535 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 582
>sp|Q90ZC7|KCMA1_XENLA Calcium-activated potassium channel subunit alpha-1 OS=Xenopus
laevis GN=kcnma1 PE=2 SV=1
Length = 1196
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 93/108 (86%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 442 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 501
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 502 LLNIPSWNWKDGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 549
>sp|Q28265|KCMA1_CANFA Calcium-activated potassium channel subunit alpha-1 (Fragment)
OS=Canis familiaris GN=KCNMA1 PE=2 SV=2
Length = 1159
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 79/108 (73%), Positives = 93/108 (86%)
Query: 16 HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
H + K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+
Sbjct: 412 HDLARVKIESADACLILANKYCDDPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 471
Query: 76 LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
LLNIPSW+WK+GDD ICLAEL+LGFIAQSCLA G STM+ANLF++ SF
Sbjct: 472 LLNIPSWNWKEGDDAICLAELRLGFIAQSCLAQGLSTMLANLFSIGSF 519
>sp|A5LFX5|KCNU1_MACFA Potassium channel subfamily U member 1 OS=Macaca fascicularis
GN=KCNU1 PE=2 SV=1
Length = 1149
Score = 139 bits (351), Expect = 4e-33, Method: Composition-based stats.
Identities = 60/102 (58%), Positives = 74/102 (72%)
Query: 23 VHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82
V A+ACL++AN C D AED +NIMRV+SIKNY R+IIQ++Q HNK YL IPSW
Sbjct: 405 VESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSW 464
Query: 83 DWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFK 124
DW GD++IC AELKLGFIAQ CL PG T + +LF ++ K
Sbjct: 465 DWDAGDNIICFAELKLGFIAQGCLVPGLCTFLTSLFVEQNRK 506
>sp|A8MYU2|KCNU1_HUMAN Potassium channel subfamily U member 1 OS=Homo sapiens GN=KCNU1
PE=1 SV=2
Length = 1149
Score = 137 bits (346), Expect = 1e-32, Method: Composition-based stats.
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 23 VHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82
V A+ACL++AN C D AED +NIMRV+SIKNY R+IIQ++Q HNK YL IPSW
Sbjct: 405 VESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSW 464
Query: 83 DWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFK 124
+W GD++IC AELKLGFIAQ CL PG T + +LF ++ K
Sbjct: 465 NWDTGDNIICFAELKLGFIAQGCLVPGLCTFLTSLFVEQNKK 506
>sp|O54982|KCNU1_MOUSE Potassium channel subfamily U member 1 OS=Mus musculus GN=Kcnu1
PE=1 SV=2
Length = 1121
Score = 129 bits (325), Expect = 4e-30, Method: Composition-based stats.
Identities = 55/96 (57%), Positives = 69/96 (71%)
Query: 23 VHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82
V ++ACL+LAN +C D ED +NIMRV+SIKNY RVIIQ++Q NK +L IP+W
Sbjct: 405 VENSEACLILANHFCSDLHDEDNSNIMRVLSIKNYYPQTRVIIQILQSQNKVFLSKIPNW 464
Query: 83 DWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLF 118
DW GD+++C AELKLGFIAQ CL PG T + LF
Sbjct: 465 DWSAGDNILCFAELKLGFIAQGCLVPGLCTFLTTLF 500
>sp|Q6UVM3|KCNT2_HUMAN Potassium channel subfamily T member 2 OS=Homo sapiens GN=KCNT2
PE=1 SV=1
Length = 1135
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
+K+ +A+AC +L+++ D + D I+R ++K+++ + + +Q+++ NK ++
Sbjct: 373 AKMDDAEACFILSSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQILKPENKFHI---- 428
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANL 117
K D V+C E K +A +C+ P ST++ L
Sbjct: 429 ----KFADHVVCEEEFKYAMLALNCICPATSTLITLL 461
>sp|Q6UVM4|KCNT2_RAT Potassium channel subfamily T member 2 OS=Rattus norvegicus
GN=Kcnt2 PE=1 SV=1
Length = 1142
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
+K+ A+AC +L+++ D + D I+R ++K+++ + + +Q+++ NK ++
Sbjct: 373 AKMDNAEACFILSSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQILKPENKFHI---- 428
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANL 117
K D V+C E K +A +C+ P ST++ L
Sbjct: 429 ----KFADHVVCEEEFKYAMLALNCICPATSTLITLL 461
>sp|Q6ZPR4|KCNT1_MOUSE Potassium channel subfamily T member 1 OS=Mus musculus GN=Kcnt1
PE=2 SV=2
Length = 1224
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
+K+ +AC +L+++ D A D I+R ++K+++ + + +Q+++ NK ++
Sbjct: 412 AKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV---- 467
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANL 117
K D V+C E K +A +C+ P ST++ L
Sbjct: 468 ----KFADHVVCEEECKYAMLALNCICPATSTLITLL 500
>sp|Q5JUK3|KCNT1_HUMAN Potassium channel subfamily T member 1 OS=Homo sapiens GN=KCNT1
PE=2 SV=2
Length = 1230
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
+K+ +AC +L+++ D A D I+R ++K+++ + + +Q+++ NK ++
Sbjct: 426 AKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV---- 481
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANL 117
K D V+C E K +A +C+ P ST++ L
Sbjct: 482 ----KFADHVVCEEECKYAMLALNCICPATSTLITLL 514
>sp|Q9Z258|KCNT1_RAT Potassium channel subfamily T member 1 OS=Rattus norvegicus
GN=Kcnt1 PE=1 SV=1
Length = 1237
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
+K+ +AC +L+++ D A D I+R ++K+++ + + +Q+++ NK ++
Sbjct: 426 AKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV---- 481
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANL 117
K D V+C E K +A +C+ P ST++ L
Sbjct: 482 ----KFADHVVCEEECKYAMLALNCICPATSTLITLL 514
>sp|Q8QFV0|KCNT1_CHICK Potassium channel subfamily T member 1 OS=Gallus gallus GN=KCNT1
PE=2 SV=1
Length = 1201
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
+K+ +AC +L+++ D A D I+R ++K+++ + + +Q+++ NK ++
Sbjct: 424 AKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHV---- 479
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANL 117
K D V+C E K +A +C+ P ST++ L
Sbjct: 480 ----KFADHVVCEEECKYAMLALNCVCPATSTLITLL 512
>sp|Q89A21|REP_BUCBP ATP-dependent DNA helicase rep OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rep PE=3 SV=1
Length = 670
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 44 DAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
D +I+ +IS KN D+ RVI+Q + H Y
Sbjct: 304 DYGSIVEIISAKNEEDEARVILQTLMLHKSNY 335
>sp|Q0BUF0|COBQ_GRABC Cobyric acid synthase OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=cobQ PE=3 SV=1
Length = 481
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 42 AEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGF- 100
AEDAA+++R +S S + + + ++ ++ N D +D + L + G
Sbjct: 230 AEDAADLLRGLSAPTRSGNTVIAVPML-----PHIANFDDLDPLAAEDSVTLVMVPPGQP 284
Query: 101 --IAQSCLAPGFSTMMANLFAMR 121
+A + + PG T++A+L A+R
Sbjct: 285 LPVADAIIIPGSKTVIADLAALR 307
>sp|B6YST9|SYL_THEON Leucine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=leuS PE=3 SV=1
Length = 967
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 54 IKNYSDDIRVIIQLMQYHN--KAYLLNIPSWDWKQGDDV 90
+KN +DI+ II++ + + +AY+ P W W+ + V
Sbjct: 839 VKNLIEDIKEIIRVAKIEDAKRAYIYTAPEWKWRVAEAV 877
>sp|P45614|Y714_MYCCT Uncharacterized RNA pseudouridine synthase MCAP_0714 OS=Mycoplasma
capricolum subsp. capricolum (strain California kid /
ATCC 27343 / NCTC 10154) GN=MCAP_0714 PE=3 SV=2
Length = 302
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 8 SDDMQCGNHQNSNSKVHEADACLVLAN--KYCQDPDAEDAANIMRVISIKNYSDDIRVII 65
+D +Q + N NS +AD LV N KYCQ N++ V I IR ++
Sbjct: 185 NDFLQVNGYINYNSNTQKADFSLVEKNNYKYCQTEFKLVNKNLILVKLITGKKHQIRSVL 244
Query: 66 QLMQYHNKAYLLNIPSWDWKQGDD--VICLAELKLGF 100
Y+N +LN ++ K+ +D +I LA K+ F
Sbjct: 245 SF--YNNP--ILNDFRYNGKKENDQKMIYLAAFKIEF 277
>sp|Q9V0B9|SYL_PYRAB Leucine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=leuS PE=3 SV=1
Length = 967
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 54 IKNYSDDIRVIIQLMQYHN--KAYLLNIPSWDWK 85
IK+ +DI+ II++ + + +AY+ P W WK
Sbjct: 839 IKSLIEDIKEIIEVAKIESPKRAYIYTAPEWKWK 872
>sp|B1ZZ32|MNMA_OPITP tRNA-specific 2-thiouridylase MnmA OS=Opitutus terrae (strain DSM
11246 / PB90-1) GN=mnmA PE=3 SV=1
Length = 378
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 41 DAEDAANIMRVISIKNYSDDIRVIIQLMQYHNK--AYLLNIPSWDWKQGDDVICLAELKL 98
D EDA + I I + RV+ + +Y + AYLL+ + D++C E+K
Sbjct: 54 DIEDARRVATQIGI-----EFRVVNLMREYRERVVAYLLDGYARGLTPNPDIMCNREVKF 108
Query: 99 GFIAQSCLAPGFSTMMANLFAMR 121
G GF+ + +A R
Sbjct: 109 GVFRSWAKDHGFAAIATGHYAQR 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,046,491
Number of Sequences: 539616
Number of extensions: 1508180
Number of successful extensions: 2852
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2821
Number of HSP's gapped (non-prelim): 35
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)