Query psy6103
Match_columns 125
No_of_seqs 102 out of 150
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:40:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hpf_A Potassium channel subfa 100.0 1.8E-28 6.1E-33 213.8 9.5 112 11-122 61-176 (722)
2 3mt5_A Potassium large conduct 99.9 7.8E-25 2.7E-29 192.4 9.6 114 10-123 60-177 (726)
3 3naf_A Calcium-activated potas 99.9 3.7E-24 1.3E-28 189.7 11.0 113 10-122 110-226 (798)
4 1lnq_A MTHK channels, potassiu 98.8 2E-08 6.7E-13 79.4 8.4 89 17-119 169-257 (336)
5 2aef_A Calcium-gated potassium 98.3 2.1E-06 7.1E-11 64.2 8.0 89 17-119 63-151 (234)
6 4hpf_A Potassium channel subfa 98.2 2.3E-06 8E-11 74.5 6.4 110 10-120 446-580 (722)
7 4gx0_A TRKA domain protein; me 98.1 3.3E-06 1.1E-10 70.9 6.7 79 17-111 184-262 (565)
8 1id1_A Putative potassium chan 98.1 1.7E-05 5.9E-10 55.6 8.3 88 17-118 63-151 (153)
9 3naf_A Calcium-activated potas 97.9 2.2E-05 7.6E-10 70.0 7.7 111 10-121 462-629 (798)
10 3fwz_A Inner membrane protein 97.9 4.7E-05 1.6E-09 52.9 7.3 78 17-108 63-140 (140)
11 4gx0_A TRKA domain protein; me 97.8 5.7E-05 1.9E-09 63.4 7.3 83 17-113 400-482 (565)
12 3l4b_C TRKA K+ channel protien 97.5 0.00012 4.3E-09 54.0 5.6 82 17-112 57-138 (218)
13 3mt5_A Potassium large conduct 97.5 5.5E-05 1.9E-09 66.8 4.2 111 10-121 438-605 (726)
14 3llv_A Exopolyphosphatase-rela 97.4 0.00076 2.6E-08 46.1 7.7 79 17-110 62-140 (141)
15 3l9w_A Glutathione-regulated p 97.0 0.0011 3.9E-08 54.4 6.3 80 17-110 60-140 (413)
16 1lss_A TRK system potassium up 96.4 0.017 5.9E-07 38.4 7.7 78 18-110 62-139 (140)
17 4g65_A TRK system potassium up 96.3 0.0069 2.3E-07 50.3 6.0 87 17-111 60-146 (461)
18 3c85_A Putative glutathione-re 95.8 0.024 8.1E-07 40.2 6.2 75 18-106 97-172 (183)
19 2hmt_A YUAA protein; RCK, KTN, 95.3 0.019 6.6E-07 38.2 4.2 80 17-110 62-141 (144)
20 2g1u_A Hypothetical protein TM 95.0 0.11 3.7E-06 35.9 7.4 74 17-105 76-149 (155)
21 4g65_A TRK system potassium up 94.7 0.095 3.3E-06 43.4 7.4 90 7-111 278-371 (461)
22 2lq1_A De novo designed antifr 28.2 10 0.00035 19.1 -0.3 11 106-116 6-16 (26)
23 3dev_A SH1221; alpha-beta prot 20.9 1.8E+02 0.0061 22.5 5.5 50 21-76 10-63 (320)
24 2x0j_A Malate dehydrogenase; o 20.4 2.1E+02 0.0071 21.9 5.7 52 21-73 65-123 (294)
No 1
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=213.82 Aligned_cols=112 Identities=53% Similarity=0.996 Sum_probs=106.6
Q ss_pred cccCc----ccccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCC
Q psy6103 11 MQCGN----HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQ 86 (125)
Q Consensus 11 ~~~~~----~DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ 86 (125)
++.|+ +||.||++++|+|||||++++..++.++|++||+++|++|+++|+++|+||+++++|+.|+.+++.|.+++
T Consensus 61 ~i~Gs~~~~~dL~ra~i~~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p~~~iivq~~~~~n~~~~~~~~~~~~~g 140 (722)
T 4hpf_A 61 FISGSAMKWEDLRRVAVESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSWNWDT 140 (722)
T ss_dssp CCBCCSSCHHHHHHHTGGGSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCTTCCEEEECSSGGGGGHHHHSTTCCTTT
T ss_pred EEEcCCCCHHHHHhcCcccCCEEEEeCCCccCCchhhHHHHHHHHHHHHHhCCCCCEEEEECChhhHHHHHhhhhhhhcC
Confidence 45554 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhhcc
Q psy6103 87 GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRS 122 (125)
Q Consensus 87 ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~~s 122 (125)
+|+|||.+|+|+++||++|+|||++|++.||+++.+
T Consensus 141 ad~VI~~~el~~~lla~s~~~PG~stli~~Ll~~~~ 176 (722)
T 4hpf_A 141 GDNIICFAELKLGFIAQGCLVPGLCTFLTSLFVEQN 176 (722)
T ss_dssp TCEEECHHHHHHHHHHHHHHSTTHHHHHHHTTCCCC
T ss_pred CCeEEeHHHHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 999999999999999999999999999999998764
No 2
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=99.91 E-value=7.8e-25 Score=192.36 Aligned_cols=114 Identities=72% Similarity=1.192 Sum_probs=107.0
Q ss_pred ccccCcc----cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCC
Q psy6103 10 DMQCGNH----QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWK 85 (125)
Q Consensus 10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~ 85 (125)
.++.|+. ||.||++++|++|||+++++..++..+|++||+++|++|+++|+++|++|+++++++.++.++|+|+++
T Consensus 60 ~fI~Gdat~~edL~RA~I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP~i~IVA~~~~~en~~~L~ri~sw~~A 139 (726)
T 3mt5_A 60 EFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWK 139 (726)
T ss_dssp EEECCCTTSHHHHHHTTGGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCTTSCEEEEESCHHHHGGGGGSTTCCTT
T ss_pred EEEEeCCCCHHHHHhcChhhcCEEEEEcCccccCCcccHHHHHHHHHHHHHhCCCCCEEEEECCHHHHHHHhhccchhhc
Confidence 3455554 799999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhhccc
Q psy6103 86 QGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123 (125)
Q Consensus 86 ~ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~~s~ 123 (125)
|||+|||.++++..+||++|++||+++++.||+++++.
T Consensus 140 GAd~VI~~~el~g~LLAqs~l~PGlst~i~~LLs~~s~ 177 (726)
T 3mt5_A 140 EGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 177 (726)
T ss_dssp TTCEEEEHHHHHHHHHHHHHHSTTHHHHHHTTTSCCCC
T ss_pred CCCEEEehHHHHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999987543
No 3
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=189.68 Aligned_cols=113 Identities=73% Similarity=1.205 Sum_probs=107.0
Q ss_pred ccccCc----ccccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCC
Q psy6103 10 DMQCGN----HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWK 85 (125)
Q Consensus 10 ~~~~~~----~DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~ 85 (125)
.++.|+ +||.||++++|++|||+++++..++..+|++||+++|++|+++|+++|++|+.+++++.++.++++|+++
T Consensus 110 ~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP~i~IIa~~~~~en~~~L~~~~sw~~A 189 (798)
T 3naf_A 110 EFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWK 189 (798)
T ss_dssp EEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHSTTCCEEEEESCTTGGGSGGGCTTCCTT
T ss_pred EEEEcCCCCHHHHHhcCHhhCCEEEEECCccccCCccchHHHHHHHHHHHHHCCCCCEEEEECCHhHHHHHHhcccchhc
Confidence 355666 4799999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhhcc
Q psy6103 86 QGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRS 122 (125)
Q Consensus 86 ~ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~~s 122 (125)
|||+|||.++++..+||++|++||+++++.||+++++
T Consensus 190 GAd~VI~~~el~g~LLAqs~l~PGls~~i~~LLs~~~ 226 (798)
T 3naf_A 190 EGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRS 226 (798)
T ss_dssp TTCEEEEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCC
T ss_pred CCCEEEehHHHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998754
No 4
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.78 E-value=2e-08 Score=79.37 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=80.7
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
+|.+|.+++|++++++.+ +|..|++.++.+|.++|+.+++++...+++...+..+ |+|.||+.++.
T Consensus 169 ~L~~a~i~~a~~vi~~~~--------~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~ 234 (336)
T 1lnq_A 169 DLEKANVRGARAVIVDLE--------SDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMA------GADQVISPFVI 234 (336)
T ss_dssp HHHHTCSTTEEEEEECCS--------SHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHHT------TCSEEECHHHH
T ss_pred HHHhcChhhccEEEEcCC--------ccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHc------CCCEEEChhHh
Confidence 589999999999999875 3899999999999999999999999999998887654 48999999999
Q ss_pred HHHHHHhhcccCChHHHHHHHHh
Q psy6103 97 KLGFIAQSCLAPGFSTMMANLFA 119 (125)
Q Consensus 97 k~~lLA~sc~~PG~sTli~NL~~ 119 (125)
....|++.+..||+..++.+++.
T Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~ 257 (336)
T 1lnq_A 235 SGRLMSRSIDDGYEAMFVQDVLA 257 (336)
T ss_dssp HHHHHHHTSSCSHHHHHHHHHTS
T ss_pred HHHHHHHHHhCccHHHHHHHHHc
Confidence 99999999999999888867764
No 5
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=98.31 E-value=2.1e-06 Score=64.23 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=78.3
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.++.+..|++|+++.+ .|..|++.++.+|.++|++++++.+-.+++...+..+ |+|.||+.++.
T Consensus 63 ~l~~a~i~~ad~vi~~~~--------~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~ 128 (234)
T 2aef_A 63 DLEKANVRGARAVIVDLE--------SDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMA------GADQVISPFVI 128 (234)
T ss_dssp HHHHTTCTTCSEEEECCS--------CHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHHH------TCSEEECHHHH
T ss_pred HHHhcCcchhcEEEEcCC--------CcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHHC------CCCEEECHHHH
Confidence 578899999999999875 3789999999999999999999999999988777654 48999999999
Q ss_pred HHHHHHhhcccCChHHHHHHHHh
Q psy6103 97 KLGFIAQSCLAPGFSTMMANLFA 119 (125)
Q Consensus 97 k~~lLA~sc~~PG~sTli~NL~~ 119 (125)
-...|++.+..|++..++..++.
T Consensus 129 ~a~~l~~~~~~~~~~~~~~~~~~ 151 (234)
T 2aef_A 129 SGRLMSRSIDDGYEAMFVQDVLA 151 (234)
T ss_dssp HHHHHHHTSSCSHHHHHHHHHHC
T ss_pred HHHHHHHHHcCccHHHHHHHHhc
Confidence 99999999999998888755543
No 6
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=98.17 E-value=2.3e-06 Score=74.52 Aligned_cols=110 Identities=12% Similarity=0.149 Sum_probs=81.3
Q ss_pred ccccCcc----cccccccCcccEEEEccCCCCC--CchhHHHHHHHHHHhhhhcC-------CCCcEEEEecccchHhhh
Q psy6103 10 DMQCGNH----QNSNSKVHEADACLVLANKYCQ--DPDAEDAANIMRVISIKNYS-------DDIRVIIQLMQYHNKAYL 76 (125)
Q Consensus 10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~~~--d~~~~D~~tILr~laVK~~~-------p~~~i~vqil~~e~k~~l 76 (125)
|+..|.. ||.||++..|+.|+||+..... ++.-.|..+|+.++.|+++. |++++++|+..+.|...+
T Consensus 446 y~~~GSpl~~~DL~ragi~~a~~vVIl~~~~~~~~~~~~~D~~tI~~~~~I~~l~~~~~~~~~~i~iitEL~~~sN~~fl 525 (722)
T 4hpf_A 446 YILPGCALYSGDLHAANIEQCSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDEKSNCRKVPILTELKNPSNIHFI 525 (722)
T ss_dssp EEEESCTTCHHHHHHTTGGGCSEEEEECCCCCC-----CCSHHHHHHHHHHHSCCC-------CCCEEEECSSGGGHHHH
T ss_pred EEEECCcCCHHHHHhcCcccccEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHhhhhccCCCCcEEEEecCcccchhh
Confidence 4556664 8999999999999999976442 34446999999999999984 789999999999998887
Q ss_pred hcC---CCCCCCC---------CCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhh
Q psy6103 77 LNI---PSWDWKQ---------GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAM 120 (125)
Q Consensus 77 ~~a---~~w~~~~---------ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~ 120 (125)
... ..|.... +-.|. ...+=..||.|+.+-|.+.|++..|+..
T Consensus 526 ~~~~~~~~~~~~~~~~~s~~FAsG~vf-s~smldsLl~qsf~n~~i~~ii~~Ll~g 580 (722)
T 4hpf_A 526 EQLGGLEGSLQETNLHLSTAFSTGTVF-SGSFLDSLLATAFYNYHVLELLQMLVTG 580 (722)
T ss_dssp HHHHTCCTTTCCSSGGGSHHHHHTSEE-CGGGGGTHHHHHHHCHHHHHHHHHHHHS
T ss_pred cccccchhcccCcccccchhhhcccEe-HHHHHHHHHHHHHhcHHHHHHHHHHhcC
Confidence 422 2222111 12344 4455566999999999999999999864
No 7
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.15 E-value=3.3e-06 Score=70.94 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=68.0
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
+|.+|.+++|++++++.+ |..|++.++.+|.++ ++++++..-.+++..++..+ |+|+||+.++.
T Consensus 184 ~L~~a~i~~a~~vi~t~~---------D~~n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~ 247 (565)
T 4gx0_A 184 VLAGLRVAAARSIIANLS---------DPDNANLCLTVRSLC-QTPIIAVVKEPVHGELLRLA------GANQVVPLTRI 247 (565)
T ss_dssp HHHHTTGGGCSEEEECSC---------HHHHHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHH------TCSEEECHHHH
T ss_pred HHHhcCcccCCEEEEeCC---------cHHHHHHHHHHHHhc-CceEEEEECCHHHHHHHHHc------CCCEEEChHHH
Confidence 599999999999998432 678899999999999 99999999999999888765 49999999999
Q ss_pred HHHHHHhhcccCChH
Q psy6103 97 KLGFIAQSCLAPGFS 111 (125)
Q Consensus 97 k~~lLA~sc~~PG~s 111 (125)
....|++.+..||..
T Consensus 248 ~~~~la~~~~~p~~~ 262 (565)
T 4gx0_A 248 LGRYLGIRATTCGAL 262 (565)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccc
Confidence 999999999999985
No 8
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=98.08 E-value=1.7e-05 Score=55.58 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=75.7
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.++.+..|++|+++.+. |..|++.+...|..+|..++++..-.+++...+..+ |+|.||+.+++
T Consensus 63 ~l~~a~i~~ad~vi~~~~~--------d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~ 128 (153)
T 1id1_A 63 VLKKAGIDRCRAILALSDN--------DADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLF 128 (153)
T ss_dssp HHHHHTTTTCSEEEECSSC--------HHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTT------CCSEEECHHHH
T ss_pred HHHHcChhhCCEEEEecCC--------hHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHH
Confidence 4788899999999999863 788999999999999999999999999988777654 48999999999
Q ss_pred HHHHHHhhcccCCh-HHHHHHHH
Q psy6103 97 KLGFIAQSCLAPGF-STMMANLF 118 (125)
Q Consensus 97 k~~lLA~sc~~PG~-sTli~NL~ 118 (125)
-...|++....|++ ...+.+++
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~ 151 (153)
T 1id1_A 129 GSEILARVLNGEEINNDMLVSML 151 (153)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHTT
T ss_pred HHHHHHHHHhCCCCcHHHHHHHh
Confidence 99999999999988 55555544
No 9
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=97.92 E-value=2.2e-05 Score=69.96 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=82.9
Q ss_pred ccccCcc----cccccccCcccEEEEccCCC--CCCchhHHHHHHHHHHhhhh---------------------------
Q psy6103 10 DMQCGNH----QNSNSKVHEADACLVLANKY--CQDPDAEDAANIMRVISIKN--------------------------- 56 (125)
Q Consensus 10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~--~~d~~~~D~~tILr~laVK~--------------------------- 56 (125)
++..|.+ ||+||++..|++|+||+++. +.|+...|+.+||.++=||.
T Consensus 462 y~v~Gspl~~~dL~~anI~~a~~~VIls~~~~~~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~~~~~~~~~~~~~~~~ 541 (798)
T 3naf_A 462 SILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSP 541 (798)
T ss_dssp EBCBSCTTCHHHHHHTTSTTCSEEEEEESSCTTCCCSSSTTHHHHHHHHHHHHCCCC-----------------------
T ss_pred EEecCCCCCHHHHHHhCHHhCCEEEEEcCCCCCCCChhhhhHHHHHhhhhhhhhcccccccccccccccccccccccccc
Confidence 4566665 89999999999999999963 44777799999977666554
Q ss_pred ---------------cCCCCcEEEEecccchHhhhhcCCCCCCCC---------CCeEeEhHHHHHHHHHhhcccCChHH
Q psy6103 57 ---------------YSDDIRVIIQLMQYHNKAYLLNIPSWDWKQ---------GDDVICLAELKLGFIAQSCLAPGFST 112 (125)
Q Consensus 57 ---------------~~p~~~i~vqil~~e~k~~l~~a~~w~~~~---------ad~vIc~~elk~~lLA~sc~~PG~sT 112 (125)
++|++++++|+-.+.|...+..-. .+..+ |..-+-...+-..|+.+..+.|-+.|
T Consensus 542 ~~~~~~~~~~~~~~~~~~~ipiitEL~~~~ni~fl~~~~-~~~~~~~~~~~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~ 620 (798)
T 3naf_A 542 DNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDD-DDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILT 620 (798)
T ss_dssp ---------------CTTCCCEEEEESSTTGGGGGSCCT-TCCTTCCGGGSHHHHHTSEEETTHHHHHHHHHHHCTHHHH
T ss_pred ccccccchhhccccccCCCCceEEEecCCCccccccccC-CCccCcceeecccccccceeHHHHHHHHHHHHHhCHHHHH
Confidence 357899999999999987775311 11111 12233445566779999999999999
Q ss_pred HHHHHHhhc
Q psy6103 113 MMANLFAMR 121 (125)
Q Consensus 113 li~NL~~~~ 121 (125)
++.-|++..
T Consensus 621 il~~lvtGg 629 (798)
T 3naf_A 621 LIRTLVTGG 629 (798)
T ss_dssp HHHHHHSCS
T ss_pred HHHHHHhCC
Confidence 999998753
No 10
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=97.87 E-value=4.7e-05 Score=52.86 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=66.6
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.++.+..|+++++..+. |..+.+-+..+|..+|++++++-.-.+++...+..+ |+|.||+.++.
T Consensus 63 ~l~~a~i~~ad~vi~~~~~--------~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~ 128 (140)
T 3fwz_A 63 IMQLAHLECAKWLILTIPN--------GYEAGEIVASARAKNPDIEIIARAHYDDEVAYITER------GANQVVMGERE 128 (140)
T ss_dssp HHHHTTGGGCSEEEECCSC--------HHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHH
T ss_pred HHHhcCcccCCEEEEECCC--------hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHC------CCCEEECchHH
Confidence 3888999999999988763 667777788899999999999999999998888765 49999999999
Q ss_pred HHHHHHhhcccC
Q psy6103 97 KLGFIAQSCLAP 108 (125)
Q Consensus 97 k~~lLA~sc~~P 108 (125)
-..-|++....|
T Consensus 129 ~a~~i~~~l~~~ 140 (140)
T 3fwz_A 129 IARTMLELLETP 140 (140)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhhCC
Confidence 998888877665
No 11
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=97.76 E-value=5.7e-05 Score=63.39 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=71.7
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.++.+++|++++++.+. |..|++.++.+|.++|++++++..-.+++...+..+ |+|.||+.++.
T Consensus 400 ~L~~agi~~ad~vi~~~~~--------d~~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~ 465 (565)
T 4gx0_A 400 TLRQAGIDRASGIIVTTND--------DSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAA------GADFVVSNASV 465 (565)
T ss_dssp HHHHHTTTSCSEEEECCSC--------HHHHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHH------TCSEEEEHHHH
T ss_pred HHHhcCccccCEEEEECCC--------chHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHc------CCCEEEccchH
Confidence 4999999999999999973 899999999999999999999999999998887665 49999999999
Q ss_pred HHHHHHhhcccCChHHH
Q psy6103 97 KLGFIAQSCLAPGFSTM 113 (125)
Q Consensus 97 k~~lLA~sc~~PG~sTl 113 (125)
-...+++....|.+..+
T Consensus 466 ~~~~i~~~~~~~~~~~~ 482 (565)
T 4gx0_A 466 GANILGNLLEHKESAFL 482 (565)
T ss_dssp HHHHHHHHHHCC-----
T ss_pred HHHHHHHHhcchhhhhh
Confidence 99999998887766543
No 12
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=97.54 E-value=0.00012 Score=53.95 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=72.2
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.++.+..|+++++..+. |..|++.+...|..+|..++++..-.+++...+..+ |+|.||+.++.
T Consensus 57 ~l~~a~i~~ad~vi~~~~~--------d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~ 122 (218)
T 3l4b_C 57 ILRDAEVSKNDVVVILTPR--------DEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTL 122 (218)
T ss_dssp HHHHHTCCTTCEEEECCSC--------HHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHH
T ss_pred HHHhcCcccCCEEEEecCC--------cHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHH
Confidence 4888999999999998763 778899999999999999999999999998887665 48999999999
Q ss_pred HHHHHHhhcccCChHH
Q psy6103 97 KLGFIAQSCLAPGFST 112 (125)
Q Consensus 97 k~~lLA~sc~~PG~sT 112 (125)
-...|++....|++..
T Consensus 123 ~~~~l~~~~~~~~~~~ 138 (218)
T 3l4b_C 123 ITNTVEALIFPDEFSS 138 (218)
T ss_dssp HHHHHHHHHCTTSCEE
T ss_pred HHHHHHHHhccCCceE
Confidence 9999999999998754
No 13
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=97.54 E-value=5.5e-05 Score=66.84 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=77.6
Q ss_pred ccccCcc----cccccccCcccEEEEccCCC--CCCchhHHHHHHHHHHhhhhc--------------------------
Q psy6103 10 DMQCGNH----QNSNSKVHEADACLVLANKY--CQDPDAEDAANIMRVISIKNY-------------------------- 57 (125)
Q Consensus 10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~--~~d~~~~D~~tILr~laVK~~-------------------------- 57 (125)
|+..|.+ ||.||++..|++|+||+.+. ..|+.-.|..+||.+|-||..
T Consensus 438 y~~~Gspl~~~dL~~~~i~~c~~cvils~~~~~~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (726)
T 3mt5_A 438 SILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSP 517 (726)
T ss_dssp EEEESCTTCHHHHHHTTGGGCSEEEEEECC----------CHHHHHHHHHHHTCEEC-----------------------
T ss_pred EEecCCcCChHhHHHhCHhhCCEEEEecCCCCCcCCcccchhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 4456665 89999999999999999854 457777899999999777764
Q ss_pred ----------------CCCCcEEEEecccchHhhhhcCCCCCC---------CCCCeEeEhHHHHHHHHHhhcccCChHH
Q psy6103 58 ----------------SDDIRVIIQLMQYHNKAYLLNIPSWDW---------KQGDDVICLAELKLGFIAQSCLAPGFST 112 (125)
Q Consensus 58 ----------------~p~~~i~vqil~~e~k~~l~~a~~w~~---------~~ad~vIc~~elk~~lLA~sc~~PG~sT 112 (125)
++++++++|+..+.|...+..-. .+. ..|...+-...+--.||.+..+.|-+.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~i~iitEL~~~sni~fl~~~~-~~~~~~~~~~~~~fa~G~~f~~s~ldsl~~~~~~n~~i~~ 596 (726)
T 3mt5_A 518 DNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDD-DDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILT 596 (726)
T ss_dssp ------------CCEEGGGSCEEEEESCGGGGTTSCSSS-CCCTTSCGGGSHHHHTTCEEEGGGGGTHHHHHHHCHHHHH
T ss_pred ccCccchhhhcccccccCCCceEEEecCCccceeeeecc-ccCCCcceeecccccccceehHHHHHHHHHHHHhhHHHHH
Confidence 35789999999999987765311 011 1122334444555669999999999999
Q ss_pred HHHHHHhhc
Q psy6103 113 MMANLFAMR 121 (125)
Q Consensus 113 li~NL~~~~ 121 (125)
++..|++..
T Consensus 597 ~~~~litgg 605 (726)
T 3mt5_A 597 LIRTLVTGG 605 (726)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHhCC
Confidence 999998764
No 14
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=97.38 E-value=0.00076 Score=46.10 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=67.4
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.++.+..|+++|+..+ .|..+++.+..+|..+ ..++++..-.+++...+..+ |+|.||+.++.
T Consensus 62 ~l~~~~~~~~d~vi~~~~--------~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~ 126 (141)
T 3llv_A 62 FYRSLDLEGVSAVLITGS--------DDEFNLKILKALRSVS-DVYAIVRVSSPKKKEEFEEA------GANLVVLVADA 126 (141)
T ss_dssp HHHHSCCTTCSEEEECCS--------CHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHHHHT------TCSEEEEHHHH
T ss_pred HHHhCCcccCCEEEEecC--------CHHHHHHHHHHHHHhC-CceEEEEEcChhHHHHHHHc------CCCEEECHHHH
Confidence 377888899999998776 3778899999999999 89999999999888777665 48999999999
Q ss_pred HHHHHHhhcccCCh
Q psy6103 97 KLGFIAQSCLAPGF 110 (125)
Q Consensus 97 k~~lLA~sc~~PG~ 110 (125)
-...|++....|+.
T Consensus 127 ~~~~l~~~i~~p~~ 140 (141)
T 3llv_A 127 VKQAFMDKIKKMET 140 (141)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCccc
Confidence 99999999999975
No 15
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.01 E-value=0.0011 Score=54.37 Aligned_cols=80 Identities=9% Similarity=-0.021 Sum_probs=66.9
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.+|.+.+|+++++..+. |..|+..+..+|.++|+++|++-.-.+++...+..+| +|.||..+..
T Consensus 60 ~L~~agi~~A~~viv~~~~--------~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~~G------ad~Vi~~~~~ 125 (413)
T 3l9w_A 60 LLESAGAAKAEVLINAIDD--------PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAG------VEKPERETFE 125 (413)
T ss_dssp HHHHTTTTTCSEEEECCSS--------HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHTT------CSSCEETTHH
T ss_pred HHHhcCCCccCEEEECCCC--------hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCC------CCEEECccHH
Confidence 3889999999999998873 8899999999999999999999999999888887654 9999988777
Q ss_pred HHHHHHhhcc-cCCh
Q psy6103 97 KLGFIAQSCL-APGF 110 (125)
Q Consensus 97 k~~lLA~sc~-~PG~ 110 (125)
-...|+...+ .-|+
T Consensus 126 ~a~~la~~~L~~lg~ 140 (413)
T 3l9w_A 126 GALKTGRLALESLGL 140 (413)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 7766666555 3344
No 16
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=96.41 E-value=0.017 Score=38.39 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=57.2
Q ss_pred ccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHHH
Q psy6103 18 NSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELK 97 (125)
Q Consensus 18 L~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~elk 97 (125)
|.++.+..|+.||+.... |..+..-....+.+.|. ++++..-.+++...+..+ +++.|++.+++-
T Consensus 62 l~~~~~~~~d~vi~~~~~--------~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~ 126 (140)
T 1lss_A 62 LEDAGIEDADMYIAVTGK--------EEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERL------GVDVVVSPELIA 126 (140)
T ss_dssp HHHTTTTTCSEEEECCSC--------HHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHT------TCSEEECHHHHH
T ss_pred HHHcCcccCCEEEEeeCC--------chHHHHHHHHHHHcCCC-EEEEEecCHhHHHHHHHc------CCCEEECHHHHH
Confidence 556778899999999752 23344444556777775 888888888877766554 489999999999
Q ss_pred HHHHHhhcccCCh
Q psy6103 98 LGFIAQSCLAPGF 110 (125)
Q Consensus 98 ~~lLA~sc~~PG~ 110 (125)
...+++....|++
T Consensus 127 ~~~~~~~~~~p~~ 139 (140)
T 1lss_A 127 ANYIEKLIERPGI 139 (140)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHhccCCC
Confidence 9999999998874
No 17
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=96.25 E-value=0.0069 Score=50.27 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=69.8
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.+|.+++|++++.+.+. |..|++..+..|..+|..++++-+-.|++..+......-..-+.|.+|+.+++
T Consensus 60 ~L~~Agi~~ad~~ia~t~~--------De~Nl~~~~~Ak~~~~~~~~iar~~~~~~~~~~~~l~~~~~~giD~iIsPe~~ 131 (461)
T 4g65_A 60 VLHEAGAQDADMLVAVTNT--------DETNMAACQVAFTLFNTPNRIARIRSPQYLAQKEALFKSGAIPVDHLIAPEEL 131 (461)
T ss_dssp HHHHHTTTTCSEEEECCSC--------HHHHHHHHHHHHHHHCCSSEEEECCCHHHHTTHHHHTTTSSSCCSEEECHHHH
T ss_pred HHHhcCCCcCCEEEEEcCC--------hHHHHHHHHHHHHhcCCccceeEeccchhhhhhhhhhhcccCCcceeecHHHH
Confidence 3999999999998887763 99999999999999999999999988875432211110011468999999999
Q ss_pred HHHHHHhhcccCChH
Q psy6103 97 KLGFIAQSCLAPGFS 111 (125)
Q Consensus 97 k~~lLA~sc~~PG~s 111 (125)
-...+++-...||..
T Consensus 132 ~a~~I~~~i~~p~~~ 146 (461)
T 4g65_A 132 VTSYIERLIQYPGAL 146 (461)
T ss_dssp HHHHHHHHHTSTTCS
T ss_pred HHHHHHHhccCCCeE
Confidence 999999999999863
No 18
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.76 E-value=0.024 Score=40.21 Aligned_cols=75 Identities=8% Similarity=-0.080 Sum_probs=58.5
Q ss_pred cccc-ccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 18 NSNS-KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 18 L~Ra-~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
|.++ .+..|+.||+.... |..+..-+..+|..+|..++++....+++...+..+ |++.|++.++.
T Consensus 97 l~~~~~~~~ad~vi~~~~~--------~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~ 162 (183)
T 3c85_A 97 WERILDTGHVKLVLLAMPH--------HQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLES------GVDAAFNIYSE 162 (183)
T ss_dssp HHTBCSCCCCCEEEECCSS--------HHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHH------TCSEEEEHHHH
T ss_pred HHhccCCCCCCEEEEeCCC--------hHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHc------CCCEEEchHHH
Confidence 6777 78999999997652 455666667889999999999988888777766554 58999999998
Q ss_pred HHHHHHhhcc
Q psy6103 97 KLGFIAQSCL 106 (125)
Q Consensus 97 k~~lLA~sc~ 106 (125)
-...|++..+
T Consensus 163 ~a~~l~~~~~ 172 (183)
T 3c85_A 163 AGSGFARHVC 172 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 19
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.34 E-value=0.019 Score=38.23 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=60.6
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
+|.++.+..++.+++.+.. + ...++......|.+.|. ++++..-.+++...+..+ +++.+++.++.
T Consensus 62 ~l~~~~~~~~d~vi~~~~~---~----~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~ 127 (144)
T 2hmt_A 62 ELLSLGIRNFEYVIVAIGA---N----IQASTLTTLLLKELDIP-NIWVKAQNYYHHKVLEKI------GADRIIHPEKD 127 (144)
T ss_dssp HHHTTTGGGCSEEEECCCS---C----HHHHHHHHHHHHHTTCS-EEEEECCSHHHHHHHHHH------TCSEEECHHHH
T ss_pred HHHhcCCCCCCEEEECCCC---c----hHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHc------CCCEEECccHH
Confidence 4666778899999988763 1 13455666778888886 888888777776666544 48999999999
Q ss_pred HHHHHHhhcccCCh
Q psy6103 97 KLGFIAQSCLAPGF 110 (125)
Q Consensus 97 k~~lLA~sc~~PG~ 110 (125)
-...|++....|+.
T Consensus 128 ~~~~l~~~~~~~~~ 141 (144)
T 2hmt_A 128 MGVKIAQSLSDENV 141 (144)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccc
Confidence 99999988887764
No 20
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.01 E-value=0.11 Score=35.94 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=57.5
Q ss_pred cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103 17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL 96 (125)
Q Consensus 17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el 96 (125)
.|.++.+..|+.||+.... |..+......+|..+|..++++..-.+++...+..+ +++ +|+.+++
T Consensus 76 ~l~~~~~~~ad~Vi~~~~~--------~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~ 140 (155)
T 2g1u_A 76 TLKECGMEKADMVFAFTND--------DSTNFFISMNARYMFNVENVIARVYDPEKIKIFEEN------GIK-TICPAVL 140 (155)
T ss_dssp HHHTTTGGGCSEEEECSSC--------HHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTT------TCE-EECHHHH
T ss_pred HHHHcCcccCCEEEEEeCC--------cHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHH
Confidence 3666778899999998763 445566666778788999999999988888777654 478 9999999
Q ss_pred HHHHHHhhc
Q psy6103 97 KLGFIAQSC 105 (125)
Q Consensus 97 k~~lLA~sc 105 (125)
-...|++..
T Consensus 141 ~a~~l~~~l 149 (155)
T 2g1u_A 141 MIEKVKEFI 149 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887653
No 21
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=94.67 E-value=0.095 Score=43.36 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=73.8
Q ss_pred cccccccCcc---c-ccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCC
Q psy6103 7 ESDDMQCGNH---Q-NSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82 (125)
Q Consensus 7 ~~~~~~~~~~---D-L~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w 82 (125)
++...++|+. + |..+++.+|++++-+.+. |..|||..+-.|++... ++++-+-.+++...+..
T Consensus 278 ~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~--------De~Ni~~~llAk~~gv~-kvIa~vn~~~~~~l~~~---- 344 (461)
T 4g65_A 278 ENTIVFCGDAADQELLTEENIDQVDVFIALTNE--------DETNIMSAMLAKRMGAK-KVMVLIQRGAYVDLVQG---- 344 (461)
T ss_dssp TTSEEEESCTTCHHHHHHTTGGGCSEEEECCSC--------HHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHCS----
T ss_pred CCceEEeccccchhhHhhcCchhhcEEEEcccC--------cHHHHHHHHHHHHcCCc-cccccccccchhhhhhc----
Confidence 3456677776 2 899999999999999874 99999999999998864 88888888887766644
Q ss_pred CCCCCCeEeEhHHHHHHHHHhhcccCChH
Q psy6103 83 DWKQGDDVICLAELKLGFIAQSCLAPGFS 111 (125)
Q Consensus 83 ~~~~ad~vIc~~elk~~lLA~sc~~PG~s 111 (125)
.+.|.+|.........+.+....|++.
T Consensus 345 --~gid~visp~~~~a~~I~~~i~~~~v~ 371 (461)
T 4g65_A 345 --GVIDVAISPQQATISALLTHVRRADIV 371 (461)
T ss_dssp --SSSCEEECHHHHHHHHHHHHHHHTTCC
T ss_pred --cccceeeCHHHHHHHHHHHHhhccccc
Confidence 458999999999988888888777653
No 22
>2lq1_A De novo designed antifreeze peptide 3; AFP, antifreeze protein; NMR {Synthetic}
Probab=28.19 E-value=10 Score=19.06 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=8.6
Q ss_pred ccCChHHHHHH
Q psy6103 106 LAPGFSTMMAN 116 (125)
Q Consensus 106 ~~PG~sTli~N 116 (125)
+.||+||.++-
T Consensus 6 lspglstaltg 16 (26)
T 2lq1_A 6 LSPGLSTALTG 16 (26)
T ss_dssp SHHHHHHHHHH
T ss_pred cCccceehccc
Confidence 57999988764
No 23
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=20.86 E-value=1.8e+02 Score=22.46 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=34.6
Q ss_pred cccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhh----cCCCCcEEEEecccchHhhh
Q psy6103 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKN----YSDDIRVIIQLMQYHNKAYL 76 (125)
Q Consensus 21 a~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~----~~p~~~i~vqil~~e~k~~l 76 (125)
-.++.++.++|+.-.+. |...|=.+++++. ..|+.++++..-.|++...+
T Consensus 10 ~~i~~~~~i~I~~H~~P------D~DaigSalal~~~l~~~~~~k~v~~~~~~~~~~~fl 63 (320)
T 3dev_A 10 QRVKEAETIIIHRHVRP------DPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFI 63 (320)
T ss_dssp HHHHTCSEEEEECBSSC------CHHHHHHHHHHHHHHHHHCTTSEEEECCCCCGGGTTT
T ss_pred HHHhcCCeEEEEeCCCC------CchHHHHHHHHHHHHHHhCCCCEEEEeCCCcchhhhc
Confidence 34678999999998765 7777777777775 56777777654344454443
No 24
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=20.40 E-value=2.1e+02 Score=21.91 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=35.6
Q ss_pred cccCcccEEEEccCC-CCCCchhHH----HHHHHHHH--hhhhcCCCCcEEEEecccchH
Q psy6103 21 SKVHEADACLVLANK-YCQDPDAED----AANIMRVI--SIKNYSDDIRVIIQLMQYHNK 73 (125)
Q Consensus 21 a~~~~A~AvfILad~-~~~d~~~~D----~~tILr~l--aVK~~~p~~~i~vqil~~e~k 73 (125)
..++.|+-|+|.+-. ........| ...|++.+ +++.++|+..+++ +-.|-+.
T Consensus 65 ~~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlv-vsNPvd~ 123 (294)
T 2x0j_A 65 SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV-VTNPMDV 123 (294)
T ss_dssp GGGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEE-CSSSHHH
T ss_pred HHhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEE-ecCcchh
Confidence 357899999999973 333344444 56677765 7888999986544 6667554
Done!