RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6103
(125 letters)
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel,
gating ring, rossman fold, transport, ION trans; 3.10A
{Homo sapiens}
Length = 798
Score = 114 bits (286), Expect = 4e-31
Identities = 81/105 (77%), Positives = 92/105 (87%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+LLNIP
Sbjct: 125 VKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIP 184
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
SW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 185 SWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIK 229
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M,
alpha member 1; potassium channel, membrane protein,
transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Length = 726
Score = 107 bits (267), Expect = 2e-28
Identities = 81/105 (77%), Positives = 92/105 (87%)
Query: 21 SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
K+ ADACL+LANKYC DPDAEDA+NIMRVISIKNY IR+I Q++QYHNKA+LLNIP
Sbjct: 75 VKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIP 134
Query: 81 SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
SW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 135 SWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIK 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.002
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 6 HESDDMQCGNHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMR-VISIKNYSDDI--- 61
H D + G HQ + V + + + D +D ++ + ++S + D I
Sbjct: 4 HHHMDFETGEHQYQYKDILS-----VFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMS 57
Query: 62 --------RVIIQLMQYHNKAY------LLNIPSWDW 84
R+ L+ + +L ++ +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKF 93
Score = 28.7 bits (63), Expect = 0.56
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 18/96 (18%)
Query: 31 VLANKYCQDPDAEDAANIMRV--ISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGD 88
+A C + + ++ +++KN + V+ L + LL +W
Sbjct: 165 WVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQK------LLYQIDPNWTSRS 217
Query: 89 DVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFK 124
D +L++ I + L + ++
Sbjct: 218 DHSSNIKLRIHSIQAE---------LRRLLKSKPYE 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.62
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 44 DAANIMRVISIKNYSDDIRVII-----------QLMQYHNKAYLLNIPSWDWKQGDDVIC 92
DA + R +++ + + ++ QL + NK L P+ + D+
Sbjct: 2 DAYS-TRPLTLSH--GSLEHVLLVPTASFFIASQLQEQFNKI--LPEPTEGFAADDEPTT 56
Query: 93 LAELK---LGFIAQSCLAPGFSTMMANL-FAMRSFKT 125
AEL LG+++ L + F+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 26.6 bits (59), Expect = 2.1
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 16/98 (16%)
Query: 23 VHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82
V A A +V D+ I ++ I+ + +R+I + +Y N L
Sbjct: 69 VRGARAVIVDLE--------SDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMA--- 117
Query: 83 DWKQG-DDVICLAELKLGFIAQSCLAPGFSTMMANLFA 119
G D VI + +++S + + ++ A
Sbjct: 118 ----GADQVISPFVISGRLMSRSIDDGYEAMFVQDVLA 151
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 26.4 bits (59), Expect = 2.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 61 IRVI--IQLMQYHNKAYLLNIPSWDWKQGDDVI 91
+RV+ +QL A P DWK GD V+
Sbjct: 161 LRVVISLQLTAEKRVA----TPV-DWKDGDSVM 188
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 26.4 bits (58), Expect = 2.6
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 77 LNIPSWDWKQGDDVICLAE 95
LN+ +W+ G+ C
Sbjct: 401 LNVQKSNWEAGNTFTCSVL 419
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 26.4 bits (59), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 61 IRVI--IQLMQYHNKAYLLNIPSWDWKQGDDVI 91
+RVI +QL A P+ DW+ GD +
Sbjct: 157 LRVIDSLQLTAQKKVA----TPA-DWQPGDRCM 184
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 26.4 bits (58), Expect = 2.9
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 77 LNIPSWDWKQGDDVICLAE 95
L + W+QG+ C
Sbjct: 420 LTVDKSRWQQGNVFSCSVM 438
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 26.4 bits (58), Expect = 3.2
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 77 LNIPSWDWKQGDDVICLAE 95
L + +W + + C
Sbjct: 411 LRVEKKNWVERNSYSCSVV 429
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 3.5
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 53 SIKNYSDD------IRVIIQ 66
S+K Y+DD I+ ++
Sbjct: 28 SLKLYADDSAPALAIKATME 47
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 61 IRVI--IQLMQYHNKAYLLNIPSWDWKQGDDVI 91
+RV+ +QL A P +W +GD
Sbjct: 158 LRVLKSLQLTYTTPVA----TPV-NWNEGDKCC 185
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 25.4 bits (56), Expect = 5.0
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 23 VHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82
+ A L L++ DA N V+S K+ S D++ ++ + N + +
Sbjct: 69 IDRCRAILALSD--------NDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMV--- 117
Query: 83 DWKQGDDVICLAELKLGFIAQSCLAPGFSTMM 114
D ++ +A+ + M
Sbjct: 118 ---HPDIILSPQLFGSEILARVLNGEEINNDM 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.132 0.405
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,919,766
Number of extensions: 103680
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 17
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)