RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6103
         (125 letters)



>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
           yoelii [TaxId: 73239]}
          Length = 219

 Score = 27.4 bits (60), Expect = 0.43
 Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 36  YCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVI 91
           +   P+ +  A ++   +    + +I  +++ +Q       +  P  +W +GD   
Sbjct: 131 FFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYT-TPVATPV-NWNEGDKCC 184


>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 111

 Score = 26.2 bits (57), Expect = 0.73
 Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 62  RVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAE 95
            + +Q +      Y    P + W  GD V  L  
Sbjct: 79  WISVQALGAAEDKYWF--PCYRWVVGDGVQSLPV 110


>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 186

 Score = 24.8 bits (53), Expect = 3.0
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 34  NKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVI 91
             +  DP     A  +    I   + D+   I+  QY         P+  WK+G+  +
Sbjct: 120 ATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPA-KWKEGEATL 176


>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 220

 Score = 24.8 bits (53), Expect = 3.3
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           +  E    +     +   PD +   +I+   +     D+I  ++  +Q   +  +   P 
Sbjct: 117 EKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVA-TPV 175

Query: 82  WDWKQGDDVI 91
            DWK GD V+
Sbjct: 176 -DWKDGDSVM 184


>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
          catalytic subunit alpha-1, AMPK1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 153

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 61 IRVIIQLMQYHNKAYLLNIPSWDWKQ 86
           ++ +QL Q  ++ YLL+  S D + 
Sbjct: 50 SKMSLQLYQVDSRTYLLDFRSIDDEI 75


>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant
          domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 101

 Score = 23.5 bits (50), Expect = 7.0
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 77 LNIPSWDWKQGDDVICLAE 95
          LN+   +W+ G+   C   
Sbjct: 68 LNVQKSNWEAGNTFTCSVL 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,065
Number of extensions: 20099
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 14
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)