Query psy6104
Match_columns 118
No_of_seqs 41 out of 43
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 17:42:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9j_B Integrin beta-3; transm 92.2 0.19 6.5E-06 30.4 3.9 34 31-64 8-41 (43)
2 2knc_B Integrin beta-3; transm 91.6 0.095 3.2E-06 35.2 2.2 34 31-64 9-42 (79)
3 1s4x_A Integrin beta-3; cell a 55.9 1.8 6.2E-05 28.4 -0.6 19 45-63 11-29 (67)
4 2k9y_A Ephrin type-A receptor 35.2 23 0.00079 19.9 2.0 28 34-64 12-39 (41)
5 3s8f_C Cytochrome C oxidase po 29.2 37 0.0013 19.7 2.2 16 42-57 11-26 (34)
6 3s8f_B Cytochrome C oxidase su 22.5 78 0.0027 23.2 3.5 17 29-45 14-30 (168)
7 1w8x_P Protein P16, protein S, 20.3 56 0.0019 23.2 2.2 14 45-58 11-24 (117)
8 2hi6_A UPF0107 protein AF0055; 20.2 35 0.0012 25.0 1.1 13 104-116 44-56 (141)
9 2kv9_B Integrin beta-3; platel 20.1 31 0.0011 23.1 0.8 19 46-64 20-38 (75)
10 3arc_I Photosystem II reaction 18.6 65 0.0022 19.2 1.9 12 39-50 9-20 (38)
No 1
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=92.24 E-value=0.19 Score=30.40 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy6104 31 RKWWCFLLSSIFTFILGLVIVLLWRLFAFICCRK 64 (118)
Q Consensus 31 R~~waFLlSSivTF~gGLliIliwR~i~~~cc~k 64 (118)
-.++..+-....+-+.||+++++||++.++-=||
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Drr 41 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRK 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHHheehhh
Confidence 3445555555557889999999999997665444
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=91.59 E-value=0.095 Score=35.21 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy6104 31 RKWWCFLLSSIFTFILGLVIVLLWRLFAFICCRK 64 (118)
Q Consensus 31 R~~waFLlSSivTF~gGLliIliwR~i~~~cc~k 64 (118)
-.+...+-....+.+.||+++++||++.++-=||
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i~Drr 42 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRK 42 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778999999999999997665554
No 3
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=55.89 E-value=1.8 Score=28.45 Aligned_cols=19 Identities=16% Similarity=-0.197 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q psy6104 45 ILGLVIVLLWRLFAFICCR 63 (118)
Q Consensus 45 ~gGLliIliwR~i~~~cc~ 63 (118)
+.||+++++|+++.++-=|
T Consensus 11 liGl~lLliwKll~~i~Dr 29 (67)
T 1s4x_A 11 SGLVPRGSHMKLLITIHDR 29 (67)
T ss_dssp ----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 6799999999999655444
No 4
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=35.24 E-value=23 Score=19.93 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy6104 34 WCFLLSSIFTFILGLVIVLLWRLFAFICCRK 64 (118)
Q Consensus 34 waFLlSSivTF~gGLliIliwR~i~~~cc~k 64 (118)
.+.+.-+.+ +|+.++++.=++.+.+|||
T Consensus 12 ~~~I~~~vv---~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 12 NLAVIGGVA---VGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp STHHHHHHH---HHHHHHHHHHHHHHSSSSS
T ss_pred eEEEEeehh---HHHHHHHHHHHHheeEeee
Confidence 455555554 5555444111333345554
No 5
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=29.21 E-value=37 Score=19.67 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6104 42 FTFILGLVIVLLWRLF 57 (118)
Q Consensus 42 vTF~gGLliIliwR~i 57 (118)
+.|+.|++|++.|=..
T Consensus 11 ~V~ilg~~I~i~W~~v 26 (34)
T 3s8f_C 11 VILVLTLTILVFWLGV 26 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577888888887655
No 6
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=22.52 E-value=78 Score=23.24 Aligned_cols=17 Identities=41% Similarity=0.919 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy6104 29 QERKWWCFLLSSIFTFI 45 (118)
Q Consensus 29 ~~R~~waFLlSSivTF~ 45 (118)
-||+|..|-++.++.|+
T Consensus 14 ~e~~w~~~~~~~~~~f~ 30 (168)
T 3s8f_B 14 YEKGWLAFSLAMLFVFI 30 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46667666666666554
No 7
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=20.30 E-value=56 Score=23.23 Aligned_cols=14 Identities=43% Similarity=0.845 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q psy6104 45 ILGLVIVLLWRLFA 58 (118)
Q Consensus 45 ~gGLliIliwR~i~ 58 (118)
-|||++||||--|+
T Consensus 11 ggglvliliwlwfr 24 (117)
T 1w8x_P 11 GGGLVLILIWLWFR 24 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHc
Confidence 48999999997775
No 8
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=20.25 E-value=35 Score=25.02 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=11.6
Q ss_pred hhhccccceEEEE
Q psy6104 104 ISGQTTTGRILVP 116 (118)
Q Consensus 104 ISaQT~tGRILVV 116 (118)
+.||...|||||.
T Consensus 44 L~G~siagkILv~ 56 (141)
T 2hi6_A 44 IKGESVAGRILVF 56 (141)
T ss_dssp STTCBCTTSEEEE
T ss_pred cCCCcccCeEEEe
Confidence 6799999999985
No 9
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=20.14 E-value=31 Score=23.05 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q psy6104 46 LGLVIVLLWRLFAFICCRK 64 (118)
Q Consensus 46 gGLliIliwR~i~~~cc~k 64 (118)
.+|++++||+++.++-=|+
T Consensus 20 ~~~~~LliwKll~~i~DrR 38 (75)
T 2kv9_B 20 HMSPECLIWKLLITIHDRK 38 (75)
T ss_dssp --CHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHhhHHHH
Confidence 4678899999996554443
No 10
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=18.57 E-value=65 Score=19.23 Aligned_cols=12 Identities=25% Similarity=0.406 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q psy6104 39 SSIFTFILGLVI 50 (118)
Q Consensus 39 SSivTF~gGLli 50 (118)
-..|+||.+|++
T Consensus 9 y~vV~ffvsLFi 20 (38)
T 3arc_I 9 YIVVTFFVLLFV 20 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 457888888875
Done!