Query psy6104
Match_columns 118
No_of_seqs 41 out of 43
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 17:42:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6104.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6104hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1orna_ a.96.1.1 (A:) Endonucl 33.5 5.1 0.00037 28.1 0.5 26 88-113 23-48 (214)
2 d2axti1 f.23.37.1 (I:1-35) Pho 23.0 22 0.0016 19.5 1.9 11 40-50 10-20 (35)
3 d1ppjd2 f.23.11.1 (D:196-241) 22.0 66 0.0048 18.0 5.3 24 28-51 3-26 (46)
4 d1keaa_ a.96.1.2 (A:) Thymine- 19.1 13 0.00095 26.0 0.4 27 88-114 23-52 (217)
5 d2b3tb1 e.38.1.1 (B:7-354) Pep 16.5 22 0.0016 27.0 1.2 12 94-105 112-123 (344)
6 d1gqea_ e.38.1.1 (A:) Polypept 16.3 23 0.0017 27.1 1.2 12 94-105 136-147 (362)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 14.6 53 0.0039 18.1 2.2 13 40-52 12-24 (37)
8 d1rrqa1 a.96.1.2 (A:9-229) Cat 14.6 19 0.0014 25.1 0.3 26 88-113 18-46 (221)
9 d2hi6a1 c.8.2.3 (A:1-132) Hypo 13.3 31 0.0023 22.8 1.1 13 104-116 43-55 (132)
10 d1rq0a_ e.38.1.1 (A:) Peptide 13.0 32 0.0023 26.1 1.2 12 94-105 99-110 (333)
No 1
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=33.46 E-value=5.1 Score=28.15 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.8
Q ss_pred eeeeehhhhhhHHHhHhhhccccceE
Q psy6104 88 FEGTFMTEAKDWAGELISGQTTTGRI 113 (118)
Q Consensus 88 ~evgwmt~~KDwag~LISaQT~tGRI 113 (118)
.++.|.+-+.-++++++|.||..-+|
T Consensus 23 ~~l~~~dp~~vLVs~iLsqqT~~~~v 48 (214)
T d1orna_ 23 CELVHRNPFELLIAVVLSAQCTDALV 48 (214)
T ss_dssp CCSCCSSHHHHHHHHHHHTTSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcChHHHH
Confidence 67889999999999999999987654
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.01 E-value=22 Score=19.53 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=8.6
Q ss_pred HHHHHHHHHHH
Q psy6104 40 SIFTFILGLVI 50 (118)
Q Consensus 40 SivTF~gGLli 50 (118)
..|+||.+||+
T Consensus 10 ~vV~fFv~lFi 20 (35)
T d2axti1 10 IVVTFFVLLFV 20 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 56889888875
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.95 E-value=66 Score=18.00 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy6104 28 LQERKWWCFLLSSIFTFILGLVIV 51 (118)
Q Consensus 28 ~~~R~~waFLlSSivTF~gGLliI 51 (118)
.++||.+.|-.--+..++.+++..
T Consensus 3 ~d~RK~mG~Kv~~~l~~l~~l~yy 26 (46)
T d1ppjd2 3 HDHRKRMGLKMLLMMGLLLPLVYA 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999988776666666665544
No 4
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=19.08 E-value=13 Score=26.04 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=21.3
Q ss_pred eeeeehh---hhhhHHHhHhhhccccceEE
Q psy6104 88 FEGTFMT---EAKDWAGELISGQTTTGRIL 114 (118)
Q Consensus 88 ~evgwmt---~~KDwag~LISaQT~tGRIL 114 (118)
+++-|.. -++-++++++|.||...+|.
T Consensus 23 r~lpWr~~~dp~~vLv~~iLsqqT~~~~v~ 52 (217)
T d1keaa_ 23 RDFPWRHTRDPYVILITEILLRRTTAGHVK 52 (217)
T ss_dssp CCCGGGGCCCHHHHHHHHHHTTTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHccCcHHHHH
Confidence 5676764 38999999999999877653
No 5
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=16.50 E-value=22 Score=26.97 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=10.6
Q ss_pred hhhhhHHHhHhh
Q psy6104 94 TEAKDWAGELIS 105 (118)
Q Consensus 94 t~~KDwag~LIS 105 (118)
+|+.|||+||+.
T Consensus 112 ~EA~dwA~~L~r 123 (344)
T d2b3tb1 112 DEAALFAGDLFR 123 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 789999999974
No 6
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=16.26 E-value=23 Score=27.11 Aligned_cols=12 Identities=58% Similarity=0.855 Sum_probs=10.6
Q ss_pred hhhhhHHHhHhh
Q psy6104 94 TEAKDWAGELIS 105 (118)
Q Consensus 94 t~~KDwag~LIS 105 (118)
+|+.|||+||..
T Consensus 136 ~EA~dfA~~L~R 147 (362)
T d1gqea_ 136 TEAQDWASMLER 147 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 789999999974
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=14.64 E-value=53 Score=18.09 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q psy6104 40 SIFTFILGLVIVL 52 (118)
Q Consensus 40 SivTF~gGLliIl 52 (118)
.+..||+||++-|
T Consensus 12 ~Fw~FFagLi~YL 24 (37)
T d1eysh2 12 AFWLFFFGLIIYL 24 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567888887643
No 8
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=14.60 E-value=19 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.2
Q ss_pred eeeeehhh---hhhHHHhHhhhccccceE
Q psy6104 88 FEGTFMTE---AKDWAGELISGQTTTGRI 113 (118)
Q Consensus 88 ~evgwmt~---~KDwag~LISaQT~tGRI 113 (118)
+++-|... ++-+++++||.||..-+|
T Consensus 18 r~lpWr~~~dp~~vLV~~iLsqqT~~~~v 46 (221)
T d1rrqa1 18 RDLPWRKDRDPYKVWVSEVMLQQTRVETV 46 (221)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTTSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCcHHHH
Confidence 66767654 899999999999976443
No 9
>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.32 E-value=31 Score=22.79 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=11.2
Q ss_pred hhhccccceEEEE
Q psy6104 104 ISGQTTTGRILVP 116 (118)
Q Consensus 104 ISaQT~tGRILVV 116 (118)
+.||...|+|||.
T Consensus 43 l~g~~~~gkILv~ 55 (132)
T d2hi6a1 43 IKGESVAGRILVF 55 (132)
T ss_dssp STTCBCTTSEEEE
T ss_pred ccCccccCcEEEe
Confidence 4699999999984
No 10
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=13.02 E-value=32 Score=26.10 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=10.5
Q ss_pred hhhhhHHHhHhh
Q psy6104 94 TEAKDWAGELIS 105 (118)
Q Consensus 94 t~~KDwag~LIS 105 (118)
+|+.|||+||..
T Consensus 99 ~EA~~fA~~L~R 110 (333)
T d1rq0a_ 99 EEAALFARDLFR 110 (333)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 789999999964
Done!