RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6104
         (118 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.16
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 36/115 (31%)

Query: 14  SILISTATSDIDICLQERKWWCFL--LSSIFTFIL-----GL--------VIVLLWRLFA 58
            +L+ TA+            +     L   F  IL     G            L+ +   
Sbjct: 19  VLLVPTAS------------FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66

Query: 59  FICCRKEPELSPNDPKQKEQKAIRQGKQEFEGTFMTEAKD---WAGELISGQTTT 110
           ++       + P+   Q +Q  +     EFE  ++    D    A +L+    TT
Sbjct: 67  YV----SSLVEPSKVGQFDQ-VLNLCLTEFENCYLEG-NDIHALAAKLLQENDTT 115


>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved
           hypothetical protein, NPPSFA; 2.50A {Pyrococcus
           horikoshii}
          Length = 339

 Score = 28.0 bits (63), Expect = 0.60
 Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 3/27 (11%)

Query: 89  EGTFMTEAKDWAGELISGQ---TTTGR 112
            G F TE      + +      T TGR
Sbjct: 230 AGPFPTEMPMEEADRLGLVEYGTVTGR 256


>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell
          A cleavage on PAIR of basic residues, disease mutation,
          disul bond, glycoprotein; NMR {Homo sapiens}
          Length = 79

 Score = 26.8 bits (59), Expect = 0.86
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 33 WWCFLLSSIFTFILGLVIVLLWRLFAFICCRKE 65
              L       ++GL  +L+W+L   I  RKE
Sbjct: 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRKE 43


>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
           juncti cytoplasmic vesicle, membrane, phosphoprotein;
           HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
          Length = 109

 Score = 26.6 bits (59), Expect = 1.4
 Identities = 4/23 (17%), Positives = 8/23 (34%)

Query: 31  RKWWCFLLSSIFTFILGLVIVLL 53
           +K    +   I   I+   I  +
Sbjct: 85  KKIMIIICCVILGIIIASTIGGI 107


>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 26.5 bits (59), Expect = 2.3
 Identities = 3/30 (10%), Positives = 8/30 (26%)

Query: 34  WCFLLSSIFTFILGLVIVLLWRLFAFICCR 63
              +L++     +G V      +       
Sbjct: 97  AGLILAAAVMLFMGFVPWATSSIAVMFVLL 126


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 25.9 bits (56), Expect = 3.4
 Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 16/48 (33%)

Query: 54  WRLFAFICCRKEPELSPNDPKQKEQKA--IRQGKQEFEGTFMTEAKDW 99
           WR        +   L   D   K  +     + K++ E        +W
Sbjct: 90  WRE------EQRKRLQELDAASKVMEQEWREKAKKDLE--------EW 123


>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
           {Plasmodium falciparum} SCOP: c.37.1.10
          Length = 442

 Score = 25.9 bits (58), Expect = 3.9
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)

Query: 89  EGTFMTEAKDWAGELIS--GQ---TTTGR 112
            G F+TE  +  G+ +   G    TTT R
Sbjct: 283 CGPFLTELNNDVGQYLREKGHEYGTTTKR 311


>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
           associated factor, PURA, purine ribonucleotide
           biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
           PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
           1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
           1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
           ...
          Length = 432

 Score = 25.9 bits (58), Expect = 4.0
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 5/29 (17%)

Query: 89  EGTFMTEAKDWAGELIS--GQ---TTTGR 112
            G F TE  D  GE +   G     TTGR
Sbjct: 276 AGPFPTELNDETGEFLRKQGNEYGATTGR 304


>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein;
           1.60A {Pectobacterium atrosepticum}
          Length = 108

 Score = 24.8 bits (55), Expect = 5.2
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 72  DPKQKEQKAIRQGKQEFEGTFMTEAKDW 99
           DP  K+Q   +  +++   T +      
Sbjct: 80  DPSAKKQADNKTIQEKRNNTRLEHHHHH 107


>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
           single-stranded DNA, isomerase/DNA complex; HET: DNA;
           2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
           2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
          Length = 659

 Score = 25.3 bits (56), Expect = 6.0
 Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 76  KEQKAIRQGKQEFEGTFMTEAKDWAGELIS 105
                I + +  ++  FM        +LI 
Sbjct: 576 SVLTQISEKQCRYQ-DFMQPLVGTLYQLID 604


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,727,697
Number of extensions: 85003
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 20
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)