RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6104
         (118 letters)



>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
           {Escherichia coli [TaxId: 562]}
          Length = 501

 Score = 26.9 bits (59), Expect = 0.72
 Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 33  WWCFLLSSIFTFILGL-VIVLLWRLFAFICCRKEPELSPNDP 73
               ++++    ++ L ++ L+ +++  I  R +      DP
Sbjct: 442 TM-LMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDP 482


>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 339

 Score = 25.1 bits (53), Expect = 2.4
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 8/50 (16%)

Query: 63  RKEPELSPNDPKQKEQKAIRQGKQEFEGTFMTEAKDWAGELISGQTTTGR 112
             E +LS NDP  + Q  +           + +   W          TG 
Sbjct: 5   EAEDKLSINDPLFERQWHLVNPSFPGSDINVLDL--WY------NNITGA 46


>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 209

 Score = 24.7 bits (53), Expect = 3.0
 Identities = 5/48 (10%), Positives = 17/48 (35%)

Query: 42  FTFILGLVIVLLWRLFAFICCRKEPELSPNDPKQKEQKAIRQGKQEFE 89
                     L  +    I  +     S  +P++  +  +++ + +F+
Sbjct: 140 EILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFK 187


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,627
Number of extensions: 17519
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 9
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)