BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6105
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK L+ EG+R++K++TS+KKN+LNP YNEAL+FDV +V +V L I V+DYD I
Sbjct: 173 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 232
Query: 129 GSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWYPLME 170
G +E++G +G GR+HW EML NPR+PV W+ L+E
Sbjct: 233 GHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 18/101 (17%)
Query: 65 FDVPA-------NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVS 117
D+PA +PYVK+YL+ + R +K +T V + +LNP +NE F VP + +
Sbjct: 30 LDLPAKDSNGFSDPYVKIYLLPD--RKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK 87
Query: 118 LIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNP 158
L V D+DR +L+G + D+ LE+ + P
Sbjct: 88 LHFSVYDFDRFSRHDLIGQVVL---------DNLLELAEQP 119
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+DPYVK+YL+ + R +K +T V + +LNP +NE F VP
Sbjct: 41 SDPYVKIYLLPD--RKKKFQTKVHRKTLNPIFNETFQFSVP 79
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK L+ EG+R++K++TS+KKN+LNP YNEAL+FDV +V +V L I V+DYD I
Sbjct: 174 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 233
Query: 129 GSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWYPLME 170
G +E++G +G GR+HW EML NPR+PV W+ L+E
Sbjct: 234 GHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 276
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 18/101 (17%)
Query: 65 FDVPA-------NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVS 117
D+PA +PYVK+YL+ + R +K +T V + +LNP +NE F VP + +
Sbjct: 31 LDLPAKDSNGFSDPYVKIYLLPD--RKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK 88
Query: 118 LIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNP 158
L V D+DR +L+G + D+ LE+ + P
Sbjct: 89 LHFSVYDFDRFSRHDLIGQVVL---------DNLLELAEQP 120
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+DPYVK+YL+ + R +K +T V + +LNP +NE F VP
Sbjct: 42 SDPYVKIYLLPD--RKKKFQTKVHRKTLNPIFNETFQFSVP 80
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK++L+ GKR++KK+T++KKN+LNP+YNE+ F+VP + V +++ V+DYD+I
Sbjct: 171 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 230
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
G ++ +G +G + G HW +ML NPR+P+ QW+ L
Sbjct: 231 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 40 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
+++G + + + G + W ++
Sbjct: 98 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 125
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+DPYVKV+L+ + K+ K T V + +LNP +NE F VP
Sbjct: 40 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 78
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK++L+ GKR++KK+T++KKN+LNP+YNE+ F+VP + V +++ V+DYD+I
Sbjct: 39 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 98
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
G ++ +G +G + G HW +ML NPR+P+ QW+ L
Sbjct: 99 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 138
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK++L+ GKR++KK+T++KKN+LNP+YNE+ F+VP + V +++ V+DYD+I
Sbjct: 38 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 97
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
G ++ +G +G + G HW +ML NPR+P+ QW+ L
Sbjct: 98 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 137
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK++L+ GKR++KK+T++KKN+LNP+YNE+ F+VP + V +++ V+DYD+I
Sbjct: 46 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 105
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
G ++ +G +G + G HW +ML NPR+P+ QW+ L
Sbjct: 106 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 145
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 64/102 (62%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV L KRI KK+T VKK + N +NE +FD+P ++ ++S+ V+D +R
Sbjct: 51 SDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERG 110
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+E++G +G++ G G HW E+ D PR+ + +W+ L +
Sbjct: 111 SRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + KR+ KK+T KK +LNP +NE+ FD+P + + ++II V+D D++
Sbjct: 37 SDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKL 96
Query: 129 GSDELMGCTAIGSSFIGIGR-DHWLEMLDNPRQPVTQWYPL 168
++++G + S G G HW +M+ PRQPV QW+ L
Sbjct: 97 SRNDVIGKIYL-SWKSGPGEVKHWKDMIARPRQPVAQWHQL 136
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++P+VK++L + + K +T +KK +LNP +NE +D+ S++ SL I V DYD
Sbjct: 58 SDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
S++ +G +G S G HW E L N + + +W+ L
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 158
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++P+VK++L + + K +T +KK +LNP +NE +D+ S++ SL I V DYD
Sbjct: 58 SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
S++ +G +G S G HW E L N + + +W+ L
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 157
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++P+VK++L + + K +T +KK +LNP +NE +D+ S++ SL I V DYD
Sbjct: 36 SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 95
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
S++ +G +G S G HW E L N + + +W+ L
Sbjct: 96 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 135
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
+NPYVK YL+ + R K++TS+K++++NP Y+E L +++P S + +L V + R
Sbjct: 45 SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRF 104
Query: 129 GSDELMGCTAI 139
G + +G I
Sbjct: 105 GRNTFLGEAEI 115
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN 70
++PYVK YL+ + R K++TS+K++++NP Y+E L +++P +
Sbjct: 45 SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES 87
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+ L+ + + + K++T K +LNP +NE +F++ +V + L ++V D+DR
Sbjct: 41 SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDV-ERRLSVEVWDWDRT 99
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
++ MG + G S E+L + PV WY L+ G+
Sbjct: 100 SRNDFMGAMSFGVS----------ELL---KAPVDGWYKLLNQEEGE 133
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 38 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 95
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
+++G + + + G + W ++
Sbjct: 96 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 123
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+DPYVKV+L+ + K+ K T V + +LNP +NE F VP
Sbjct: 37 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 76
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 55 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
+++G + + + G + W ++
Sbjct: 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+DPYVKV+L+ + K+ K T V + +LNP +NE F VP
Sbjct: 54 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 93
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 55 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
+++G + + + G + W ++
Sbjct: 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+DPYVKV+L+ + K+ K T V + +LNP +NE F VP
Sbjct: 54 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 93
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 63 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 120
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
+++G + + + G + W ++
Sbjct: 121 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+DPYVKV+L+ + K+ K T V + +LNP +NE F VP
Sbjct: 63 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 101
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+ L+ + K K++T +++LNP +NE+ F + S+ D L +++ D+DR
Sbjct: 38 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 96
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
++ MG + G S E++ + P + WY L+ G+
Sbjct: 97 TRNDFMGSLSFGVS----------ELM---KMPASGWYKLLNQEEGE 130
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+ L+ + K K++T +++LNP +NE+ F + S+ D L +++ D+DR
Sbjct: 37 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 95
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
++ MG + G S E++ + P + WY L+ G+
Sbjct: 96 TRNDFMGSLSFGVS----------ELM---KMPASGWYKLLNQEEGE 129
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+ L+ + K K++T K+SLNP +NE F + S+ D L +++ D+D
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD-KDRRLSVEIWDWDLT 251
Query: 129 GSDELMGCTAIG-SSFIGIGRDHWLEML 155
++ MG + G S G D W ++L
Sbjct: 252 SRNDFMGSLSFGISELQKAGVDGWFKLL 279
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 26 SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV 67
++DPYVK+ L+ + K K++T K+SLNP +NE F +
Sbjct: 191 GLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+ L+ + K K++T K SLNP +NE F + S+ D L +++ D+D
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD-KDRRLSVEIWDWDLT 110
Query: 129 GSDELMGCTAIG-SSFIGIGRDHWLEML 155
++ MG + G S G D W ++L
Sbjct: 111 SRNDFMGSLSFGISELQKAGVDGWFKLL 138
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV 67
++DPYVK+ L+ + K K++T K SLNP +NE F +
Sbjct: 51 LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 65 FDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVI 123
F ++P+VK+YL+ + K K T VK+ +LNP +NE LF+ P V L ++V+
Sbjct: 43 FSGTSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100
Query: 124 DYDRIGSDELMGCTAI 139
DYDR ++ +G +I
Sbjct: 101 DYDRFSRNDPIGEVSI 116
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 22 RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKV 75
+ +DP+VK+YL+ + K K T VK+ +LNP +NE LF+ PY KV
Sbjct: 41 KDFSGTSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFE--GFPYEKV 90
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+ L+ + K K++T +++LNP +NE+ F + S+ D L +++ D+DR
Sbjct: 39 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 97
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
++ G + G S + + P + WY L+ G+
Sbjct: 98 TRNDFXGSLSFGVSELX-------------KXPASGWYKLLNQEEGE 131
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV 67
++DPYVK+ L+ + K K++T +++LNP +NE+ F +
Sbjct: 38 LSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 20 GNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 66
G++S P+ PYVKVYL+ G I KK+T + + +L+P Y ++L+FD
Sbjct: 47 GSKSTPA---PYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
PYVKVYL+ G I KK+T + + +L+P Y ++L+FD S V +I DY R
Sbjct: 54 PYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD--ESPQGKVLQVIVWGDYGRXDH 111
Query: 131 DELMGCTAI 139
G I
Sbjct: 112 KCFXGVAQI 120
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 48 TSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 107
T ++ L P + L A+PYVK++L+ + K RT +N+ NP +NE L +
Sbjct: 34 TIIRAKGLKPMDSNGL-----ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 108 -VPASNVNDVSLIIKVIDYDRIGSDELMGCT 137
+ ++ +L I V D D+ G +E +G T
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGET 119
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
+ADPYVK++L+ + K RT +N+ NP +NE L +
Sbjct: 49 LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 48 TSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 107
T ++ L P + L A+PYVK++L+ + K RT +N+ NP +NE L +
Sbjct: 32 TIIRAKGLKPMDSNGL-----ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 86
Query: 108 -VPASNVNDVSLIIKVIDYDRIGSDELMGCT 137
+ ++ +L I V D D+ G +E +G T
Sbjct: 87 GITEEDMQRKTLRISVCDEDKFGHNEFIGET 117
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
+ADPYVK++L+ + K RT +N+ NP +NE L +
Sbjct: 47 LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
+NPYVK+ L+ + K K+T VK+ + P + E F++P +L++ V+D+D+
Sbjct: 54 SNPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKF 111
Query: 129 GSDELMGCTAIGSSFIGIGR-DHWLEML 155
++G ++ + + + HW + L
Sbjct: 112 SRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 20 GNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
G+R + ++PYVK+ L+ + K K+T VK+ + P + E F++P
Sbjct: 46 GSRQDMAHSNPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFEIP 92
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 24/113 (21%)
Query: 69 ANPYVKVYL---------VCEGKRIRKKRTSVKKNSLNPFYNEALLF-DVPASNVNDVSL 118
++P+VKVYL V K+RT + SLNP +N+ +++ + + +L
Sbjct: 39 SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL 98
Query: 119 IIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDN-PRQPVTQWYPLME 170
+ V DYDR S++ +G I S LDN PR WYPL E
Sbjct: 99 EVTVWDYDRFSSNDFLGEVLIDLSSTS--------HLDNTPR-----WYPLKE 138
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYV++YL+ + +R +++T V K +LNP ++++ F V V +L + V +
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 129 GSDE--LMG--CTAIGSSFIGIGRDHWLEMLDN 157
S + L+G A+ S + G W ++ ++
Sbjct: 104 LSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV 67
+DPYV++YL+ + +R +++T V K +LNP ++++ F V
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 25 PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84
P DPYVK+ L+ E R+R ++T + +P ++E F V K LV R
Sbjct: 44 PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA 103
Query: 85 RKKRTS 90
+ R S
Sbjct: 104 SQSRQS 109
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
+PYVK+ L+ E R+R ++T + +P ++E F V + L+ +
Sbjct: 48 DPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSR 107
Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
L+GC + G ++ L P + ++ WY L+
Sbjct: 108 QSGLIGCXSFG-----------VKSLLTPDKEISGWYYLL 136
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 69 ANPYVKV--YLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYD 126
++PYVK+ Y+ E + + +T K +LNP +NE F V SN L+ +V D +
Sbjct: 42 SDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHR---LLFEVFDEN 98
Query: 127 RIGSDELMGCTAIGSSFI 144
R+ D+ +G + S +
Sbjct: 99 RLTRDDFLGQVDVPLSHL 116
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 6 SRSFRADNYCRPTIGNRSIPSVADPYVKV--YLVCEGKRIRKKRTSVKKNSLNPFYNEAL 63
SR R + + I +DPYVK+ Y+ E + + +T K +LNP +NE
Sbjct: 20 SRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEF 79
Query: 64 LFDVPANPYVKVYLVCEGKRIRK 86
F V + + ++ V + R+ +
Sbjct: 80 YFRVNPSNHRLLFEVFDENRLTR 102
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
P NPYVK+Y + + K+RT K +L P +N+ ++ V + L I + D
Sbjct: 41 PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 100
Query: 127 RIGSDELMGCTAIGSSFIG 145
R+ +E S F+G
Sbjct: 101 RVREEE--------SEFLG 111
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 19 IGNRSIPSVAD-----PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
+G + +PS D PYVK+Y + + K+RT K +L P +N+ ++
Sbjct: 28 LGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
P NPYVK+Y + + K+RT K +L P +N+ ++ V + L I + D
Sbjct: 38 PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 97
Query: 127 RIGSDELMGCTAIGSSFIG 145
R+ +E S F+G
Sbjct: 98 RVREEE--------SEFLG 108
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 19 IGNRSIPSVAD-----PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
+G + +PS D PYVK+Y + + K+RT K +L P +N+ ++
Sbjct: 25 LGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 106
NPYVK YL+ + + K++T + + + NP +NE L++
Sbjct: 41 NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
+PYVK YL+ + + K++T + + + NP +NE L++
Sbjct: 41 NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 69 ANPYVKVYLVCEGKRIRKK-RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYV+V L + +T K SLNP +NE +LF V + L+ +V D +R
Sbjct: 41 SDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV---HPQQHRLLFEVFDENR 97
Query: 128 IGSDELMG 135
+ D+ +G
Sbjct: 98 LTRDDFLG 105
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 1 SSSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKK-RTSVKKNSLNPFY 59
+ SR R + + I +DPYV+V L + +T K SLNP +
Sbjct: 14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKW 73
Query: 60 NEALLFDVPANPYVKVYLVCEGKRIRK 86
NE +LF V + ++ V + R+ +
Sbjct: 74 NEEILFRVHPQQHRLLFEVFDENRLTR 100
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 94 NSLNPFYNEALLFD---VPASNVNDVSLIIKVIDYDRIGSDELMGCTAI 139
N LNP +NE L FD +P + + +I+K D++ IG ++L+G +
Sbjct: 47 NELNPVWNEILEFDLRGIPLDFSSSLGIIVK--DFETIGQNKLIGTATV 93
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 69 ANPYVKVYLVCEGKRIRKK-RTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYD 126
++PYV+V L I +T K SLNP +NE +LF V P + ++ +V D +
Sbjct: 29 SDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRH----RILFEVFDEN 84
Query: 127 RIGSDELMGCTAI 139
R+ D+ +G +
Sbjct: 85 RLTRDDFLGQVDV 97
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 19 IGNRSIPSVADPYVKVYLVCEGKRIRKK-RTSVKKNSLNPFYNEALLFDVPANPYVKVYL 77
+ + I +DPYV+V L I +T K SLNP +NE +LF V + ++
Sbjct: 20 LAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFE 79
Query: 78 VCEGKRIRK 86
V + R+ +
Sbjct: 80 VFDENRLTR 88
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 64 LFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVI 123
+ D P +PYV++++ +KRT N +NP +NE F + + N L I ++
Sbjct: 38 MLDTP-DPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFILDPNQEN--VLEITLM 92
Query: 124 DYDRIGSDELMGCTAIGSSFIGIGR 148
D + + DE +G S + +G
Sbjct: 93 DANYV-MDETLGTATFTVSSMKVGE 116
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN 70
DPYV++++ +KRT N +NP +NE F + N
Sbjct: 43 DPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFILDPN 82
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 64 LFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVI 123
+ D P +PYV++++ +KRT N +NP +NE F + + N L I ++
Sbjct: 23 MLDTP-DPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFILDPNQEN--VLEITLM 77
Query: 124 DYDRIGSDELMGCTAIGSSFIGIGR 148
D + + DE +G S + +G
Sbjct: 78 DANYV-MDETLGTATFTVSSMKVGE 101
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
DPYV++++ +KRT N +NP +NE F
Sbjct: 28 DPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEF 62
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 64 LFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVI 123
+ D P +PYV++++ +KRT N +NP +NE F + + N L I ++
Sbjct: 38 MLDTP-DPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFILDPNQEN--VLEITLM 92
Query: 124 DYDRIGSDELMGCTAIGSSFIGIGR 148
D + + DE +G S + +G
Sbjct: 93 DANYV-MDETLGTATFTVSSMKVGE 116
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
DPYV++++ +KRT N +NP +NE F
Sbjct: 43 DPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEF 77
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 2 SSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNE 61
+SK S C + + +DPYV V + GK KKRT +LNP + E
Sbjct: 12 TSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQV---GKT--KKRTKTIYGNLNPVWEE 66
Query: 62 ALLFDVP-ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALL 105
F+ ++ +KV ++ E I+ + K + F + ++
Sbjct: 67 NFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTII 111
>pdb|4EKU|A Chain A, Crystal Structure Of Ferm Domain Of Proline-Rich Tyrosine
Kinase 2
Length = 392
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
PA P V V + E + +R + NS NP N L+ + + ++ I ++ R
Sbjct: 5 PAEPMVVVPVDVEKEDVRILKVCFYSNSFNPGKNFKLVKCTVQTEIREI--ITSILLSGR 62
Query: 128 IGSD-ELMGCTAIGSSFIGIGRDHWL 152
IG + L C + + HWL
Sbjct: 63 IGPNIRLAECYGLRLKHMKSDEIHWL 88
>pdb|3SKQ|A Chain A, Mdm38 Is A 14-3-3-Like Receptor And Associates With The
Protein Synthesis Machinery At The Inner Mitochondrial
Membrane
Length = 249
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 95 SLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS---DEL-MGCTAIGSSFIGIGRDH 150
SL PF N+ +L S + D+ K IDY+ + S +EL C + G G+ ++
Sbjct: 111 SLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRGMKAYGVSKED 170
Query: 151 -------WLEM 154
WLE+
Sbjct: 171 LVDNLKVWLEL 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,372,522
Number of Sequences: 62578
Number of extensions: 205914
Number of successful extensions: 585
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 92
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)