Query psy6105
Match_columns 194
No_of_seqs 216 out of 1686
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 17:43:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 5.1E-35 1.1E-39 243.8 16.7 162 7-170 167-420 (421)
2 cd08407 C2B_Synaptotagmin-13 C 100.0 1.1E-30 2.4E-35 187.1 12.6 123 6-169 14-138 (138)
3 cd08406 C2B_Synaptotagmin-12 C 100.0 4.5E-30 9.8E-35 183.8 12.3 123 6-169 14-136 (136)
4 cd08692 C2B_Tac2-N C2 domain s 100.0 9.6E-29 2.1E-33 175.1 13.7 120 7-168 14-135 (135)
5 cd08408 C2B_Synaptotagmin-14_1 100.0 3.2E-28 6.9E-33 174.9 13.4 124 6-169 14-138 (138)
6 cd08409 C2B_Synaptotagmin-15 C 99.9 9.8E-27 2.1E-31 167.2 13.8 121 6-168 14-136 (137)
7 cd08402 C2B_Synaptotagmin-1 C2 99.9 8.8E-27 1.9E-31 167.3 13.1 122 7-169 15-136 (136)
8 cd08404 C2B_Synaptotagmin-4 C2 99.9 6.1E-26 1.3E-30 162.9 13.5 122 6-168 14-135 (136)
9 cd08410 C2B_Synaptotagmin-17 C 99.9 4.6E-26 9.9E-31 163.3 12.7 121 7-168 14-135 (135)
10 cd08405 C2B_Synaptotagmin-7 C2 99.9 3.4E-26 7.5E-31 164.2 12.0 123 6-169 14-136 (136)
11 cd08403 C2B_Synaptotagmin-3-5- 99.9 5.1E-26 1.1E-30 162.9 12.7 123 5-168 12-134 (134)
12 cd08384 C2B_Rabphilin_Doc2 C2 99.9 5.9E-26 1.3E-30 162.4 11.8 122 6-168 12-133 (133)
13 cd00276 C2B_Synaptotagmin C2 d 99.9 1.7E-23 3.6E-28 149.6 13.9 122 6-168 13-134 (134)
14 cd08677 C2A_Synaptotagmin-13 C 99.9 5.9E-24 1.3E-28 147.3 9.9 103 6-153 13-117 (118)
15 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 5.7E-23 1.2E-27 151.4 13.0 125 3-168 23-161 (162)
16 cd08682 C2_Rab11-FIP_classI C2 99.9 9.7E-23 2.1E-27 144.4 12.4 125 9-188 1-125 (126)
17 cd04028 C2B_RIM1alpha C2 domai 99.9 2E-22 4.3E-27 145.4 13.4 114 7-176 29-144 (146)
18 cd08381 C2B_PI3K_class_II C2 d 99.9 8.2E-23 1.8E-27 143.9 10.8 108 7-168 13-121 (122)
19 cd08393 C2A_SLP-1_2 C2 domain 99.9 1.3E-22 2.7E-27 143.6 10.9 111 6-169 14-125 (125)
20 cd08392 C2A_SLP-3 C2 domain fi 99.9 2.9E-22 6.4E-27 142.1 11.3 113 6-168 14-127 (128)
21 cd04029 C2A_SLP-4_5 C2 domain 99.9 4.2E-22 9E-27 140.9 11.6 111 6-169 14-125 (125)
22 cd08680 C2_Kibra C2 domain fou 99.9 2.8E-22 6.1E-27 141.3 10.0 113 5-168 12-124 (124)
23 cd08395 C2C_Munc13 C2 domain t 99.9 2.4E-21 5.1E-26 135.6 13.0 111 8-172 1-114 (120)
24 cd04010 C2B_RasA3 C2 domain se 99.9 4.3E-21 9.4E-26 139.1 12.4 127 8-175 1-127 (148)
25 KOG0696|consensus 99.9 2.3E-22 5E-27 163.2 3.9 114 8-176 181-294 (683)
26 cd08685 C2_RGS-like C2 domain 99.9 4.8E-21 1E-25 134.3 9.7 108 6-168 11-119 (119)
27 cd08387 C2A_Synaptotagmin-8 C2 99.8 2.2E-20 4.7E-25 131.9 11.2 110 6-170 15-124 (124)
28 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.5E-20 3.3E-25 133.3 10.3 121 8-186 1-123 (127)
29 cd08389 C2A_Synaptotagmin-14_1 99.8 2.4E-20 5.1E-25 131.8 11.0 110 5-170 14-124 (124)
30 cd08688 C2_KIAA0528-like C2 do 99.8 1.7E-20 3.8E-25 129.8 10.0 106 9-170 1-109 (110)
31 cd04016 C2_Tollip C2 domain pr 99.8 5.7E-20 1.2E-24 128.9 12.4 118 8-190 3-121 (121)
32 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.3E-20 7.2E-25 131.0 11.0 109 6-169 15-123 (124)
33 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.3E-20 9.4E-25 134.4 11.9 127 9-190 2-131 (150)
34 KOG2059|consensus 99.8 1.5E-20 3.2E-25 159.5 9.9 167 6-189 4-274 (800)
35 cd04030 C2C_KIAA1228 C2 domain 99.8 4.3E-20 9.4E-25 130.8 10.6 111 6-169 15-127 (127)
36 cd08379 C2D_MCTP_PRT_plant C2 99.8 7.7E-20 1.7E-24 129.0 11.7 103 9-172 2-113 (126)
37 cd08521 C2A_SLP C2 domain firs 99.8 4.9E-20 1.1E-24 129.8 10.7 110 6-168 13-123 (123)
38 cd08388 C2A_Synaptotagmin-4-11 99.8 1.1E-19 2.4E-24 129.0 11.8 113 6-170 15-128 (128)
39 cd04031 C2A_RIM1alpha C2 domai 99.8 9.2E-20 2E-24 128.8 10.8 111 5-169 14-125 (125)
40 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.8E-19 3.8E-24 126.8 11.4 109 8-176 1-110 (121)
41 cd08386 C2A_Synaptotagmin-7 C2 99.8 2E-19 4.4E-24 127.0 11.2 110 6-170 15-125 (125)
42 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 5.1E-19 1.1E-23 124.7 12.5 106 8-173 1-106 (123)
43 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.5E-19 9.8E-24 126.6 10.9 129 9-191 2-133 (133)
44 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.2E-18 2.5E-23 122.6 12.7 120 9-192 2-121 (121)
45 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.2E-18 2.7E-23 123.3 12.9 123 5-192 2-124 (126)
46 cd04050 C2B_Synaptotagmin-like 99.8 1.1E-18 2.3E-23 119.8 11.5 102 9-171 2-103 (105)
47 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 2.6E-18 5.7E-23 120.8 12.8 108 8-174 1-108 (121)
48 cd04024 C2A_Synaptotagmin-like 99.8 2.3E-18 4.9E-23 122.0 12.2 109 8-174 2-113 (128)
49 cd04036 C2_cPLA2 C2 domain pre 99.8 1.7E-18 3.6E-23 121.4 11.2 108 9-174 2-109 (119)
50 cd04017 C2D_Ferlin C2 domain f 99.8 2.7E-18 5.9E-23 123.0 12.2 133 8-193 2-134 (135)
51 cd08390 C2A_Synaptotagmin-15-1 99.8 2.3E-18 5E-23 121.3 11.7 110 6-170 13-123 (123)
52 cd08376 C2B_MCTP_PRT C2 domain 99.8 2E-18 4.3E-23 120.4 11.0 103 9-171 2-104 (116)
53 KOG1030|consensus 99.8 1E-18 2.3E-23 126.0 9.7 92 8-148 7-98 (168)
54 cd08675 C2B_RasGAP C2 domain s 99.8 4E-18 8.6E-23 122.4 12.7 132 9-182 1-132 (137)
55 cd08378 C2B_MCTP_PRT_plant C2 99.8 2E-18 4.3E-23 121.4 9.9 118 9-188 2-119 (121)
56 cd04015 C2_plant_PLD C2 domain 99.8 7.6E-18 1.6E-22 123.7 13.1 100 69-190 58-157 (158)
57 cd08681 C2_fungal_Inn1p-like C 99.8 2.7E-18 5.8E-23 120.1 10.2 103 8-170 2-104 (118)
58 cd08382 C2_Smurf-like C2 domai 99.8 4.8E-18 1E-22 119.8 11.4 107 8-174 1-109 (123)
59 cd04018 C2C_Ferlin C2 domain t 99.8 4.7E-18 1E-22 123.5 11.0 130 8-176 1-131 (151)
60 cd04011 C2B_Ferlin C2 domain s 99.8 3.9E-18 8.5E-23 118.1 9.9 106 8-170 5-110 (111)
61 cd08375 C2_Intersectin C2 doma 99.8 1.3E-17 2.8E-22 119.6 12.3 117 5-176 13-129 (136)
62 cd04041 C2A_fungal C2 domain f 99.8 3.3E-18 7.1E-23 118.5 8.9 93 8-143 2-96 (111)
63 cd04026 C2_PKC_alpha_gamma C2 99.8 7.3E-18 1.6E-22 120.1 10.9 115 7-176 13-127 (131)
64 KOG1013|consensus 99.8 1.1E-19 2.4E-24 142.7 0.6 165 7-171 93-356 (362)
65 cd04027 C2B_Munc13 C2 domain s 99.8 1.1E-17 2.5E-22 118.5 10.7 102 8-172 2-114 (127)
66 cd08676 C2A_Munc13-like C2 dom 99.8 1.2E-17 2.7E-22 121.5 11.0 119 5-168 26-153 (153)
67 cd08373 C2A_Ferlin C2 domain f 99.8 2.4E-17 5.2E-22 116.8 12.1 117 13-193 2-118 (127)
68 cd08678 C2_C21orf25-like C2 do 99.8 2.6E-17 5.7E-22 116.5 12.2 121 10-193 2-122 (126)
69 cd04009 C2B_Munc13-like C2 dom 99.7 2.4E-17 5.2E-22 117.8 11.4 101 5-144 14-116 (133)
70 cd04039 C2_PSD C2 domain prese 99.7 2.1E-17 4.6E-22 113.9 10.7 89 9-144 3-95 (108)
71 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.9E-17 6.3E-22 114.9 11.3 103 8-173 2-104 (119)
72 cd04037 C2E_Ferlin C2 domain f 99.7 4.4E-17 9.5E-22 115.1 11.8 106 9-161 2-107 (124)
73 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.8E-17 6.2E-22 115.2 10.7 107 8-175 2-114 (121)
74 cd04046 C2_Calpain C2 domain p 99.7 7.7E-17 1.7E-21 114.1 12.5 101 7-171 3-103 (126)
75 cd08690 C2_Freud-1 C2 domain f 99.7 1.1E-16 2.4E-21 116.5 13.0 132 8-189 5-137 (155)
76 cd08383 C2A_RasGAP C2 domain ( 99.7 1.8E-16 3.9E-21 110.6 12.9 116 8-189 1-116 (117)
77 cd04043 C2_Munc13_fungal C2 do 99.7 3.6E-16 7.8E-21 110.5 14.1 108 8-170 2-110 (126)
78 cd08394 C2A_Munc13 C2 domain f 99.7 1.1E-16 2.5E-21 112.0 9.9 101 8-172 3-103 (127)
79 cd08691 C2_NEDL1-like C2 domai 99.7 4.2E-16 9E-21 111.6 12.3 117 8-172 2-123 (137)
80 cd04014 C2_PKC_epsilon C2 doma 99.7 4.3E-16 9.3E-21 111.1 12.3 104 7-169 4-117 (132)
81 cd04038 C2_ArfGAP C2 domain pr 99.7 2.4E-16 5.2E-21 114.0 10.2 111 8-169 3-114 (145)
82 cd04032 C2_Perforin C2 domain 99.7 4.7E-16 1E-20 109.9 11.5 91 7-145 28-118 (127)
83 cd04045 C2C_Tricalbin-like C2 99.7 2.7E-16 5.9E-21 110.4 10.2 105 8-173 2-106 (120)
84 cd04049 C2_putative_Elicitor-r 99.7 4.5E-16 9.7E-21 109.8 10.6 106 8-171 2-109 (124)
85 cd04051 C2_SRC2_like C2 domain 99.7 4.9E-16 1.1E-20 109.7 10.6 109 9-172 2-116 (125)
86 cd04048 C2A_Copine C2 domain f 99.7 5E-16 1.1E-20 109.0 10.3 103 13-170 6-114 (120)
87 cd04040 C2D_Tricalbin-like C2 99.7 1.1E-15 2.4E-20 106.3 11.3 104 9-171 1-104 (115)
88 KOG1011|consensus 99.7 2.9E-16 6.4E-21 133.0 9.5 90 69-170 1145-1237(1283)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.7 1.6E-15 3.4E-20 106.9 10.6 98 7-146 15-113 (123)
90 cd04044 C2A_Tricalbin-like C2 99.6 3E-15 6.4E-20 105.4 11.1 120 8-192 3-124 (124)
91 cd04013 C2_SynGAP_like C2 doma 99.6 5.8E-15 1.3E-19 106.4 11.3 123 5-192 9-140 (146)
92 KOG1028|consensus 99.6 2.6E-15 5.6E-20 125.8 9.6 109 69-193 188-296 (421)
93 cd04047 C2B_Copine C2 domain s 99.6 1.9E-15 4E-20 104.4 6.7 92 13-144 6-98 (110)
94 cd08686 C2_ABR C2 domain in th 99.6 1.1E-14 2.3E-19 100.8 10.0 84 9-142 1-91 (118)
95 cd08374 C2F_Ferlin C2 domain s 99.6 1.6E-14 3.6E-19 102.3 10.6 117 8-146 1-123 (133)
96 cd04021 C2_E3_ubiquitin_ligase 99.6 1.9E-14 4.1E-19 101.7 10.9 105 8-172 3-110 (125)
97 cd04052 C2B_Tricalbin-like C2 99.6 2.6E-14 5.7E-19 98.9 9.8 98 69-192 13-110 (111)
98 cd00275 C2_PLC_like C2 domain 99.6 7E-14 1.5E-18 98.8 12.0 109 7-173 2-113 (128)
99 PLN03008 Phospholipase D delta 99.5 1.2E-13 2.7E-18 121.4 9.9 103 69-193 77-179 (868)
100 PF00168 C2: C2 domain; Inter 99.5 2.6E-13 5.7E-18 88.5 7.3 85 9-138 1-85 (85)
101 PLN03200 cellulose synthase-in 99.4 4E-13 8.8E-18 127.6 9.4 102 8-170 1981-2082(2102)
102 COG5038 Ca2+-dependent lipid-b 99.4 3.2E-12 6.9E-17 114.6 11.5 99 69-173 1061-1165(1227)
103 KOG1328|consensus 99.3 6E-13 1.3E-17 114.2 3.1 98 8-144 948-1047(1103)
104 smart00239 C2 Protein kinase C 99.3 5.8E-11 1.3E-15 79.2 9.9 95 9-148 2-96 (101)
105 KOG1326|consensus 99.3 4.5E-12 9.7E-17 111.9 4.6 58 8-68 614-671 (1105)
106 PLN02223 phosphoinositide phos 99.3 1.3E-11 2.9E-16 104.6 7.3 80 69-150 435-514 (537)
107 cd00030 C2 C2 domain. The C2 d 99.3 7.3E-11 1.6E-15 78.4 9.4 102 9-168 1-102 (102)
108 KOG1328|consensus 99.2 1.4E-12 3E-17 112.0 0.7 145 12-188 119-300 (1103)
109 PLN02230 phosphoinositide phos 99.2 4.2E-11 9.1E-16 103.2 6.8 80 69-150 496-575 (598)
110 PLN02222 phosphoinositide phos 99.2 8.7E-11 1.9E-15 101.1 7.7 80 69-150 479-558 (581)
111 PLN02952 phosphoinositide phos 99.2 8.6E-11 1.9E-15 101.5 7.6 90 69-175 497-586 (599)
112 KOG0169|consensus 99.1 5.1E-11 1.1E-15 103.3 5.3 135 8-150 582-721 (746)
113 PLN02228 Phosphoinositide phos 99.1 6.9E-10 1.5E-14 95.4 8.9 80 69-150 458-538 (567)
114 COG5038 Ca2+-dependent lipid-b 99.1 1.4E-09 3E-14 98.1 11.0 69 69-144 732-800 (1227)
115 KOG1031|consensus 99.1 6.4E-10 1.4E-14 94.1 8.2 130 9-189 5-136 (1169)
116 KOG1326|consensus 99.0 9.3E-11 2E-15 103.8 1.5 54 8-66 207-260 (1105)
117 PLN02270 phospholipase D alpha 98.9 1.1E-08 2.4E-13 90.5 8.9 103 69-193 47-150 (808)
118 cd08684 C2A_Tac2-N C2 domain f 98.8 9.5E-10 2.1E-14 71.2 1.3 66 86-153 36-102 (103)
119 KOG0905|consensus 98.8 2.6E-09 5.5E-14 96.3 3.2 91 69-171 1545-1636(1639)
120 cd04052 C2B_Tricalbin-like C2 98.7 6E-08 1.3E-12 66.9 6.8 54 22-79 7-62 (111)
121 KOG1011|consensus 98.7 1.8E-08 4E-13 86.4 4.2 82 69-172 316-408 (1283)
122 KOG1264|consensus 98.6 1.7E-07 3.7E-12 82.2 9.5 77 70-148 1086-1164(1267)
123 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.5E-07 3.4E-12 63.4 6.7 85 10-147 2-89 (109)
124 PLN03008 Phospholipase D delta 98.5 1.6E-07 3.4E-12 83.5 5.8 40 25-68 74-113 (868)
125 cd04010 C2B_RasA3 C2 domain se 98.5 9.8E-08 2.1E-12 69.2 3.7 42 69-110 19-60 (148)
126 KOG2059|consensus 98.5 2.1E-07 4.6E-12 80.4 6.2 88 69-176 26-113 (800)
127 KOG1013|consensus 98.5 8.5E-08 1.8E-12 76.3 3.1 102 7-108 233-349 (362)
128 KOG1327|consensus 98.4 1.2E-06 2.6E-11 74.4 8.4 74 69-145 157-235 (529)
129 cd08683 C2_C2cd3 C2 domain fou 98.4 7E-07 1.5E-11 62.2 5.1 88 69-168 33-143 (143)
130 PLN02352 phospholipase D epsil 98.3 3.1E-06 6.7E-11 75.1 7.8 97 69-193 36-132 (758)
131 PLN02223 phosphoinositide phos 98.2 4.1E-06 8.8E-11 71.7 6.9 72 7-78 409-487 (537)
132 KOG2060|consensus 98.2 1.2E-06 2.6E-11 71.0 3.3 93 69-175 291-384 (405)
133 cd08374 C2F_Ferlin C2 domain s 98.0 1.3E-05 2.8E-10 57.0 5.3 72 69-142 25-98 (133)
134 PLN02952 phosphoinositide phos 98.0 9.6E-05 2.1E-09 64.6 11.2 73 6-78 469-549 (599)
135 cd08677 C2A_Synaptotagmin-13 C 97.9 8.4E-06 1.8E-10 56.7 2.5 32 47-78 50-85 (118)
136 PLN02230 phosphoinositide phos 97.9 2.6E-05 5.5E-10 68.0 5.7 72 7-78 469-548 (598)
137 cd08395 C2C_Munc13 C2 domain t 97.9 1.1E-05 2.5E-10 56.4 2.8 22 47-68 41-62 (120)
138 PLN02222 phosphoinositide phos 97.8 7.9E-05 1.7E-09 64.9 7.9 71 7-77 452-530 (581)
139 cd04047 C2B_Copine C2 domain s 97.8 3.8E-05 8.2E-10 52.6 4.8 39 69-108 21-60 (110)
140 KOG0905|consensus 97.8 1.1E-05 2.5E-10 73.5 2.6 58 9-66 1526-1583(1639)
141 cd08686 C2_ABR C2 domain in th 97.7 5.7E-05 1.2E-09 52.5 4.8 32 48-79 35-66 (118)
142 PLN02228 Phosphoinositide phos 97.7 0.00017 3.8E-09 62.6 7.6 71 7-77 431-510 (567)
143 KOG0169|consensus 97.6 0.00033 7.2E-09 61.8 8.2 71 7-77 616-691 (746)
144 cd08407 C2B_Synaptotagmin-13 C 97.6 0.00011 2.4E-09 52.7 4.4 65 8-79 21-93 (138)
145 cd08406 C2B_Synaptotagmin-12 C 97.5 0.00011 2.3E-09 52.6 3.7 34 46-79 54-91 (136)
146 cd08397 C2_PI3K_class_III C2 d 97.5 0.00046 1E-08 50.6 6.9 76 69-144 30-107 (159)
147 cd04028 C2B_RIM1alpha C2 domai 97.5 5.9E-05 1.3E-09 54.5 2.1 22 47-68 70-91 (146)
148 cd04036 C2_cPLA2 C2 domain pre 97.5 0.00051 1.1E-08 47.7 6.6 32 48-79 39-72 (119)
149 cd08680 C2_Kibra C2 domain fou 97.4 9.9E-05 2.1E-09 51.9 2.1 34 45-78 53-90 (124)
150 cd04029 C2A_SLP-4_5 C2 domain 97.4 0.00013 2.8E-09 51.3 2.5 31 48-78 57-91 (125)
151 PLN02964 phosphatidylserine de 97.4 0.00042 9E-09 61.2 6.1 77 70-152 69-146 (644)
152 cd08392 C2A_SLP-3 C2 domain fi 97.4 0.00012 2.7E-09 51.7 2.4 32 47-78 56-91 (128)
153 cd08381 C2B_PI3K_class_II C2 d 97.3 9.5E-05 2.1E-09 51.8 1.5 33 47-79 52-89 (122)
154 cd08393 C2A_SLP-1_2 C2 domain 97.3 0.00011 2.4E-09 51.7 1.6 56 7-68 20-77 (125)
155 cd08692 C2B_Tac2-N C2 domain s 97.3 0.00016 3.4E-09 51.5 2.3 25 45-69 52-77 (135)
156 cd08690 C2_Freud-1 C2 domain f 97.3 0.00016 3.4E-09 52.8 2.0 6 117-122 129-134 (155)
157 cd08401 C2A_RasA2_RasA3 C2 dom 97.2 0.00024 5.3E-09 49.6 2.7 19 59-77 49-68 (121)
158 cd08685 C2_RGS-like C2 domain 97.2 0.0002 4.4E-09 49.9 2.3 22 47-68 51-72 (119)
159 cd08408 C2B_Synaptotagmin-14_1 97.2 0.0003 6.5E-09 50.4 2.8 24 45-68 54-77 (138)
160 cd08409 C2B_Synaptotagmin-15 C 97.2 0.00033 7.2E-09 50.0 2.9 33 46-78 53-89 (137)
161 PLN02270 phospholipase D alpha 97.1 0.001 2.2E-08 59.7 6.3 56 9-68 10-84 (808)
162 KOG1030|consensus 97.1 0.00075 1.6E-08 49.3 4.4 56 8-79 12-74 (168)
163 cd08682 C2_Rab11-FIP_classI C2 97.1 0.00033 7.2E-09 49.2 2.6 11 9-19 6-16 (126)
164 cd04030 C2C_KIAA1228 C2 domain 97.0 0.00044 9.4E-09 48.4 2.3 21 48-68 57-77 (127)
165 cd08691 C2_NEDL1-like C2 domai 97.0 0.0014 3E-08 46.9 4.9 35 44-78 45-80 (137)
166 cd08410 C2B_Synaptotagmin-17 C 97.0 0.00042 9.2E-09 49.3 2.1 23 46-68 53-75 (135)
167 cd08388 C2A_Synaptotagmin-4-11 97.0 0.00051 1.1E-08 48.5 2.5 12 8-19 22-33 (128)
168 cd04048 C2A_Copine C2 domain f 97.0 0.001 2.3E-08 46.2 4.0 21 48-68 43-63 (120)
169 PF00792 PI3K_C2: Phosphoinosi 97.0 0.0056 1.2E-07 44.0 7.9 75 70-144 3-85 (142)
170 cd08378 C2B_MCTP_PRT_plant C2 97.0 0.0011 2.3E-08 46.4 3.8 30 51-80 35-66 (121)
171 cd08380 C2_PI3K_like C2 domain 97.0 0.0026 5.6E-08 46.4 6.0 76 69-144 28-107 (156)
172 cd04009 C2B_Munc13-like C2 dom 96.9 0.00038 8.3E-09 49.4 1.4 24 45-68 56-79 (133)
173 cd08382 C2_Smurf-like C2 domai 96.9 0.0016 3.4E-08 45.6 4.3 32 48-79 37-68 (123)
174 cd04039 C2_PSD C2 domain prese 96.9 0.00068 1.5E-08 46.4 2.3 12 57-68 50-61 (108)
175 cd04041 C2A_fungal C2 domain f 96.9 0.00078 1.7E-08 46.2 2.6 12 57-68 50-61 (111)
176 cd04033 C2_NEDD4_NEDD4L C2 dom 96.9 0.0024 5.3E-08 45.0 5.1 34 45-78 40-74 (133)
177 cd04043 C2_Munc13_fungal C2 do 96.9 0.002 4.3E-08 45.0 4.6 31 48-78 40-72 (126)
178 cd08387 C2A_Synaptotagmin-8 C2 96.9 0.00068 1.5E-08 47.3 2.2 21 48-68 55-75 (124)
179 KOG3837|consensus 96.9 0.00091 2E-08 55.3 3.1 106 69-189 388-503 (523)
180 cd08384 C2B_Rabphilin_Doc2 C2 96.8 0.00071 1.5E-08 47.9 2.1 31 48-78 54-88 (133)
181 cd00030 C2 C2 domain. The C2 d 96.8 0.0019 4.2E-08 41.9 4.0 11 69-79 20-30 (102)
182 cd04014 C2_PKC_epsilon C2 doma 96.8 0.0025 5.5E-08 45.0 4.7 24 55-78 58-81 (132)
183 cd08521 C2A_SLP C2 domain firs 96.8 0.00077 1.7E-08 46.8 2.0 21 48-68 56-76 (123)
184 cd08404 C2B_Synaptotagmin-4 C2 96.8 0.00091 2E-08 47.6 2.4 22 47-68 55-76 (136)
185 cd08390 C2A_Synaptotagmin-15-1 96.8 0.0011 2.5E-08 46.0 2.7 21 48-68 54-74 (123)
186 cd08385 C2A_Synaptotagmin-1-5- 96.8 0.0009 2E-08 46.7 2.1 31 48-78 55-89 (124)
187 cd04016 C2_Tollip C2 domain pr 96.7 0.0013 2.7E-08 46.1 2.5 14 56-69 46-59 (121)
188 cd04050 C2B_Synaptotagmin-like 96.7 0.00092 2E-08 45.3 1.7 28 51-78 39-68 (105)
189 cd04021 C2_E3_ubiquitin_ligase 96.7 0.0035 7.6E-08 43.9 4.7 22 58-79 48-69 (125)
190 cd04031 C2A_RIM1alpha C2 domai 96.7 0.00077 1.7E-08 47.0 1.3 21 48-68 57-77 (125)
191 cd08389 C2A_Synaptotagmin-14_1 96.7 0.001 2.2E-08 46.7 1.8 20 48-68 55-75 (124)
192 cd04054 C2A_Rasal1_RasA4 C2 do 96.6 0.0016 3.5E-08 45.3 2.6 13 8-20 6-18 (121)
193 cd08402 C2B_Synaptotagmin-1 C2 96.6 0.0013 2.8E-08 46.8 2.1 32 48-79 56-91 (136)
194 cd08398 C2_PI3K_class_I_alpha 96.6 0.012 2.7E-07 43.0 7.3 75 69-144 26-106 (158)
195 cd04022 C2A_MCTP_PRT_plant C2 96.6 0.0014 3.1E-08 46.0 2.3 11 9-19 7-17 (127)
196 cd08405 C2B_Synaptotagmin-7 C2 96.6 0.0011 2.3E-08 47.2 1.6 33 47-79 55-91 (136)
197 cd04042 C2A_MCTP_PRT C2 domain 96.6 0.0017 3.7E-08 45.2 2.6 25 55-79 44-69 (121)
198 cd08678 C2_C21orf25-like C2 do 96.6 0.0017 3.7E-08 45.5 2.6 26 53-78 40-66 (126)
199 cd04018 C2C_Ferlin C2 domain t 96.6 0.0015 3.2E-08 47.6 2.2 68 7-79 5-84 (151)
200 cd08693 C2_PI3K_class_I_beta_d 96.6 0.013 2.7E-07 43.7 7.3 91 70-167 28-136 (173)
201 cd04015 C2_plant_PLD C2 domain 96.6 0.0021 4.5E-08 47.1 3.0 57 8-68 8-94 (158)
202 cd08386 C2A_Synaptotagmin-7 C2 96.5 0.0017 3.6E-08 45.4 2.3 10 9-18 23-32 (125)
203 cd08376 C2B_MCTP_PRT C2 domain 96.5 0.0017 3.6E-08 44.7 2.2 10 9-18 7-16 (116)
204 cd04038 C2_ArfGAP C2 domain pr 96.5 0.0048 1E-07 44.5 4.5 12 8-19 8-19 (145)
205 KOG0696|consensus 96.5 0.00071 1.5E-08 56.5 0.1 23 46-68 219-241 (683)
206 cd08403 C2B_Synaptotagmin-3-5- 96.5 0.0017 3.7E-08 46.0 1.9 33 47-79 54-90 (134)
207 cd04020 C2B_SLP_1-2-3-4 C2 dom 96.4 0.0014 3.1E-08 48.2 1.5 32 48-79 68-104 (162)
208 cd04025 C2B_RasA1_RasA4 C2 dom 96.4 0.0022 4.8E-08 44.7 2.4 21 59-79 47-69 (123)
209 PF15627 CEP76-C2: CEP76 C2 do 96.4 0.044 9.6E-07 39.9 9.0 96 85-192 45-151 (156)
210 cd08676 C2A_Munc13-like C2 dom 96.4 0.0052 1.1E-07 44.8 4.0 35 44-78 89-125 (153)
211 cd08391 C2A_C2C_Synaptotagmin_ 96.3 0.0055 1.2E-07 42.3 3.9 9 9-17 8-16 (121)
212 KOG1265|consensus 96.3 0.0036 7.9E-08 56.3 3.5 76 69-150 720-800 (1189)
213 cd04032 C2_Perforin C2 domain 96.3 0.0021 4.5E-08 45.4 1.7 31 48-78 63-96 (127)
214 cd08375 C2_Intersectin C2 doma 96.3 0.0024 5.1E-08 45.6 1.8 26 53-78 56-83 (136)
215 cd08688 C2_KIAA0528-like C2 do 96.3 0.0031 6.7E-08 43.1 2.2 32 48-79 36-72 (110)
216 cd04024 C2A_Synaptotagmin-like 96.2 0.007 1.5E-07 42.2 3.8 10 9-18 8-17 (128)
217 cd04012 C2A_PI3K_class_II C2 d 96.2 0.051 1.1E-06 40.3 8.4 48 97-144 62-119 (171)
218 cd08373 C2A_Ferlin C2 domain f 96.1 0.0036 7.8E-08 43.9 2.2 29 51-79 33-65 (127)
219 cd08399 C2_PI3K_class_I_gamma 96.1 0.023 4.9E-07 42.5 6.4 74 71-144 32-122 (178)
220 cd00276 C2B_Synaptotagmin C2 d 96.1 0.0051 1.1E-07 43.2 2.9 32 48-79 55-90 (134)
221 cd04037 C2E_Ferlin C2 domain f 96.1 0.0044 9.6E-08 43.4 2.3 26 53-78 43-70 (124)
222 cd04044 C2A_Tricalbin-like C2 96.0 0.0056 1.2E-07 42.4 2.7 22 57-78 50-72 (124)
223 cd08695 C2_Dock-B C2 domains f 96.0 0.027 6E-07 42.3 6.3 60 84-143 52-113 (189)
224 cd08383 C2A_RasGAP C2 domain ( 96.0 0.005 1.1E-07 42.3 2.1 15 55-69 40-54 (117)
225 PF12416 DUF3668: Cep120 prote 95.9 0.032 7E-07 45.8 7.1 91 71-173 20-116 (340)
226 cd08681 C2_fungal_Inn1p-like C 95.9 0.01 2.3E-07 40.8 3.7 25 55-79 45-71 (118)
227 cd04019 C2C_MCTP_PRT_plant C2 95.9 0.005 1.1E-07 44.7 2.1 12 57-68 46-57 (150)
228 cd04046 C2_Calpain C2 domain p 95.9 0.0046 1E-07 43.4 1.9 13 130-142 108-120 (126)
229 cd04017 C2D_Ferlin C2 domain f 95.9 0.0061 1.3E-07 43.3 2.5 10 9-18 8-17 (135)
230 cd04035 C2A_Rabphilin_Doc2 C2 95.9 0.0053 1.1E-07 42.7 2.0 32 48-79 56-92 (123)
231 cd04026 C2_PKC_alpha_gamma C2 95.9 0.0061 1.3E-07 42.9 2.3 31 48-78 54-87 (131)
232 cd08377 C2C_MCTP_PRT C2 domain 95.9 0.0056 1.2E-07 42.2 2.1 10 59-68 48-57 (119)
233 cd04027 C2B_Munc13 C2 domain s 95.8 0.0063 1.4E-07 42.7 2.3 7 133-139 119-125 (127)
234 smart00142 PI3K_C2 Phosphoinos 95.8 0.033 7.2E-07 37.5 5.5 58 69-126 32-91 (100)
235 KOG2060|consensus 95.6 0.029 6.3E-07 46.1 5.5 73 7-79 269-343 (405)
236 cd08400 C2_Ras_p21A1 C2 domain 95.6 0.0096 2.1E-07 41.8 2.4 14 55-68 44-57 (126)
237 smart00239 C2 Protein kinase C 95.6 0.027 5.9E-07 36.6 4.5 32 48-79 39-72 (101)
238 cd04040 C2D_Tricalbin-like C2 95.6 0.0093 2E-07 40.8 2.2 27 52-78 40-68 (115)
239 cd08694 C2_Dock-A C2 domains f 95.6 0.058 1.3E-06 40.7 6.6 61 82-142 50-114 (196)
240 PF00168 C2: C2 domain; Inter 95.4 0.016 3.5E-07 36.8 2.8 31 48-78 38-70 (85)
241 PF14429 DOCK-C2: C2 domain in 95.3 0.067 1.4E-06 40.1 6.3 60 85-144 59-121 (184)
242 cd08394 C2A_Munc13 C2 domain f 95.2 0.017 3.6E-07 40.7 2.5 14 55-68 41-54 (127)
243 cd00275 C2_PLC_like C2 domain 94.7 0.021 4.6E-07 39.7 2.0 34 45-78 43-79 (128)
244 PLN03200 cellulose synthase-in 94.5 0.068 1.5E-06 53.1 5.5 23 46-68 2013-2035(2102)
245 cd04051 C2_SRC2_like C2 domain 93.6 0.041 8.8E-07 38.3 1.7 18 52-69 42-59 (125)
246 KOG1327|consensus 93.5 0.13 2.8E-06 44.5 4.6 54 9-62 138-192 (529)
247 PF10358 NT-C2: N-terminal C2 93.5 1.2 2.5E-05 31.6 9.1 82 95-192 49-136 (143)
248 cd08684 C2A_Tac2-N C2 domain f 93.3 0.031 6.8E-07 36.6 0.5 54 13-68 5-59 (103)
249 cd08679 C2_DOCK180_related C2 92.9 0.52 1.1E-05 35.1 6.8 56 88-143 55-115 (178)
250 PF15625 CC2D2AN-C2: CC2D2A N- 92.7 3.1 6.6E-05 30.7 11.0 87 70-172 38-126 (168)
251 cd08696 C2_Dock-C C2 domains f 92.7 0.64 1.4E-05 34.8 6.9 61 84-144 53-119 (179)
252 cd08398 C2_PI3K_class_I_alpha 92.4 1.7 3.7E-05 31.8 8.7 69 7-79 8-82 (158)
253 cd08697 C2_Dock-D C2 domains f 92.3 1.3 2.8E-05 33.3 8.1 60 84-143 55-123 (185)
254 cd08683 C2_C2cd3 C2 domain fou 91.5 0.19 4E-06 35.5 2.6 39 27-68 32-72 (143)
255 PLN02964 phosphatidylserine de 91.1 0.38 8.2E-06 43.0 4.8 46 28-78 68-116 (644)
256 cd08399 C2_PI3K_class_I_gamma 90.4 3.5 7.5E-05 30.8 8.7 72 6-78 9-85 (178)
257 cd08693 C2_PI3K_class_I_beta_d 90.0 0.92 2E-05 33.7 5.4 71 6-78 7-83 (173)
258 PLN02352 phospholipase D epsil 89.4 0.4 8.6E-06 43.5 3.5 33 29-68 37-69 (758)
259 KOG1264|consensus 85.8 1.1 2.3E-05 41.0 3.9 70 7-77 1065-1136(1267)
260 PF14924 DUF4497: Protein of u 85.6 1.1 2.4E-05 30.7 3.3 89 102-193 11-108 (112)
261 smart00142 PI3K_C2 Phosphoinos 85.0 4.3 9.3E-05 27.1 5.9 72 7-78 11-88 (100)
262 KOG4027|consensus 83.8 15 0.00032 26.9 8.3 81 64-144 21-111 (187)
263 cd08380 C2_PI3K_like C2 domain 82.0 3.6 7.8E-05 29.8 4.9 74 4-78 5-84 (156)
264 KOG1329|consensus 81.4 2.7 5.9E-05 38.7 4.7 102 70-192 139-241 (887)
265 KOG0906|consensus 80.5 3.1 6.8E-05 37.1 4.6 75 69-143 47-123 (843)
266 KOG1265|consensus 80.0 1.2 2.7E-05 40.9 2.1 90 7-101 703-799 (1189)
267 PF15627 CEP76-C2: CEP76 C2 do 79.9 4.6 0.0001 29.5 4.7 61 5-68 7-69 (156)
268 cd08689 C2_fungal_Pkc1p C2 dom 79.6 1.2 2.7E-05 30.3 1.6 15 54-68 42-56 (109)
269 PF11618 DUF3250: Protein of u 77.0 10 0.00022 25.8 5.5 75 86-172 12-91 (107)
270 cd08695 C2_Dock-B C2 domains f 68.1 8.7 0.00019 29.0 3.8 34 43-76 52-85 (189)
271 cd08694 C2_Dock-A C2 domains f 65.6 58 0.0013 24.8 9.1 32 42-73 51-82 (196)
272 KOG3837|consensus 65.3 1.9 4.1E-05 36.4 -0.2 42 27-68 387-428 (523)
273 cd08687 C2_PKN-like C2 domain 65.0 33 0.00072 22.8 5.5 50 86-143 22-71 (98)
274 KOG0904|consensus 55.1 16 0.00034 34.0 3.7 54 71-124 365-420 (1076)
275 PF00792 PI3K_C2: Phosphoinosi 49.5 67 0.0014 22.7 5.7 49 30-78 4-60 (142)
276 PF07162 B9-C2: Ciliary basal 49.2 76 0.0017 23.2 6.1 47 97-143 56-103 (168)
277 KOG1031|consensus 42.4 22 0.00049 31.6 2.6 21 48-68 40-61 (1169)
278 PF15532 Toxin_53: Putative to 41.5 92 0.002 21.0 4.8 56 7-63 34-93 (102)
279 cd08697 C2_Dock-D C2 domains f 40.7 49 0.0011 24.9 3.9 31 42-72 54-84 (185)
280 cd08397 C2_PI3K_class_III C2 d 40.2 79 0.0017 23.0 4.9 55 25-79 27-87 (159)
281 KOG0694|consensus 39.1 16 0.00035 32.9 1.2 51 69-127 28-78 (694)
282 PF14429 DOCK-C2: C2 domain in 36.6 33 0.00071 25.5 2.4 35 44-78 59-97 (184)
283 KOG2419|consensus 33.6 1.5 3.3E-05 39.0 -5.7 34 28-67 305-338 (975)
284 PF14909 SPATA6: Spermatogenes 33.3 1.8E+02 0.004 20.8 7.0 69 69-143 20-98 (140)
285 PF01060 DUF290: Transthyretin 31.0 96 0.0021 19.5 3.7 26 117-142 13-38 (80)
286 KOG0694|consensus 29.4 24 0.00053 31.8 0.8 40 25-68 25-64 (694)
287 cd08696 C2_Dock-C C2 domains f 27.2 2.1E+02 0.0046 21.4 5.4 31 42-72 52-82 (179)
288 PF13987 YedD: YedD-like prote 26.2 75 0.0016 21.4 2.5 41 130-170 25-68 (111)
289 PF14909 SPATA6: Spermatogenes 25.9 1.5E+02 0.0033 21.2 4.2 35 27-66 19-53 (140)
290 PF06219 DUF1005: Protein of u 21.8 1.7E+02 0.0038 25.1 4.4 65 116-188 95-166 (460)
291 KOG4428|consensus 20.9 1.9E+02 0.0042 26.2 4.6 57 69-125 51-108 (813)
292 PRK10397 lipoprotein; Provisio 20.9 95 0.0021 21.9 2.3 41 130-170 49-92 (137)
No 1
>KOG1028|consensus
Probab=100.00 E-value=5.1e-35 Score=243.81 Aligned_cols=162 Identities=42% Similarity=0.734 Sum_probs=153.6
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC------------------
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP------------------ 68 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~------------------ 68 (194)
..|-+.+..|++|+++|..|.+||||++++.|+ +..+.+|++.++|+||+|||+|.|.+.
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPd--k~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPD--KKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCC--CCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 467899999999999998889999999999998 577899999999999999999999977
Q ss_pred --------------------------------------------------------------------------CCceeE
Q psy6105 69 --------------------------------------------------------------------------ANPYVK 74 (194)
Q Consensus 69 --------------------------------------------------------------------------~dpyv~ 74 (194)
+|+||+
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk 324 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVK 324 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEE
Confidence 899999
Q ss_pred EEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHH
Q psy6105 75 VYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEM 154 (194)
Q Consensus 75 v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~ 154 (194)
+++........+++|.+++++.||+|||+|.|.++.+.+.+..|.|+|||++.++.+++||++.++....+.|..||.+|
T Consensus 325 ~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m 404 (421)
T KOG1028|consen 325 VTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEM 404 (421)
T ss_pred EEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCCCchHHHHHHHH
Confidence 99998888899999999999999999999999999999998999999999999999999999999999988899999999
Q ss_pred hhCCCCceEeEEEccC
Q psy6105 155 LDNPRQPVTQWYPLME 170 (194)
Q Consensus 155 l~~p~~~~~~W~~L~~ 170 (194)
+.+|+.++++||.|.+
T Consensus 405 ~~~p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 405 LNSPRKPVAQWHSLRS 420 (421)
T ss_pred HhCccCceeeeEeccc
Confidence 9999999999999975
No 2
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.97 E-value=1.1e-30 Score=187.07 Aligned_cols=123 Identities=28% Similarity=0.481 Sum_probs=107.2
Q ss_pred ceeEEEeeccCCCCCCCCCC--CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIP--SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKR 83 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~--g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~ 83 (194)
+..|.+.++.|+||.++|.+ +.+||||+|++.++.+ +
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~-----------------------------------------k 52 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNA-----------------------------------------K 52 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCc-----------------------------------------c
Confidence 45689999999999999843 5589999999987621 1
Q ss_pred eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105 84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT 163 (194)
Q Consensus 84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~ 163 (194)
..+++|+++++++||+|||+|.|.++.+++.+..|.|+|||++.++++++||++.+++.+.+.+.+||.+|+.+|+++++
T Consensus 53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va 132 (138)
T cd08407 53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIA 132 (138)
T ss_pred cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchh
Confidence 23667778888888888888889888888888899999999999999999999999999999999999999999999999
Q ss_pred eEEEcc
Q psy6105 164 QWYPLM 169 (194)
Q Consensus 164 ~W~~L~ 169 (194)
+||.|.
T Consensus 133 ~WH~L~ 138 (138)
T cd08407 133 MWHQLH 138 (138)
T ss_pred EEEECC
Confidence 999984
No 3
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.97 E-value=4.5e-30 Score=183.83 Aligned_cols=123 Identities=37% Similarity=0.627 Sum_probs=107.3
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...|.+.++.|+||+++|..|.+||||+|+|.++++. ..
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~-----------------------------------------~~ 52 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRK-----------------------------------------IS 52 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcc-----------------------------------------cc
Confidence 4579999999999999999999999999999876211 12
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
+++|+++++++||+|||+|.|.++.+++.+..|.|+|||++.++++++||++.|+..+.+.+.+||.+|+.+|++++++|
T Consensus 53 k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~W 132 (136)
T cd08406 53 KKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMW 132 (136)
T ss_pred ccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEe
Confidence 45677777778888888888888777777889999999999999999999999999999999999999999999999999
Q ss_pred EEcc
Q psy6105 166 YPLM 169 (194)
Q Consensus 166 ~~L~ 169 (194)
|.|.
T Consensus 133 H~l~ 136 (136)
T cd08406 133 HPLR 136 (136)
T ss_pred eecC
Confidence 9984
No 4
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.96 E-value=9.6e-29 Score=175.06 Aligned_cols=120 Identities=22% Similarity=0.363 Sum_probs=95.2
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..|-+.++.|++|++++..+..||||+|+|... +++..+
T Consensus 14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-----------------------------------------~k~~~K 52 (135)
T cd08692 14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-----------------------------------------GGLLYK 52 (135)
T ss_pred CeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-----------------------------------------CCccee
Confidence 457788888888887765666677777777755 233346
Q ss_pred eeceeecCCC-CCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC-CcchhhHHHHhhCCCCceEe
Q psy6105 87 KRTSVKKNSL-NPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI-GIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 87 ~kT~~~~~t~-nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~W~~~l~~p~~~~~~ 164 (194)
+||++++++. +|+|||+|.|+++.+.. +..|.|+|||++..+++++||++.++.++. +.+.+||.+|+.+|++++++
T Consensus 53 kKT~v~k~t~~~P~fNEsF~Fdv~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~ 131 (135)
T cd08692 53 KKTRLVKSSNGQVKWGETMIFPVTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTK 131 (135)
T ss_pred ecCccEECCCCCceecceEEEeCCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeE
Confidence 6777777764 57788888888776543 578999999999999999999999999874 45799999999999999999
Q ss_pred EEEc
Q psy6105 165 WYPL 168 (194)
Q Consensus 165 W~~L 168 (194)
||.|
T Consensus 132 WH~L 135 (135)
T cd08692 132 WHSL 135 (135)
T ss_pred eecC
Confidence 9987
No 5
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.96 E-value=3.2e-28 Score=174.89 Aligned_cols=124 Identities=23% Similarity=0.475 Sum_probs=107.4
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...|.+.++.|+||++++..|.+||||++++.|..+ ....
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~----------------------------------------~~~~ 53 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG----------------------------------------QEIS 53 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC----------------------------------------ccee
Confidence 457899999999999999999999999999997511 1112
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc-chhhHHHHhhCCCCceEe
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI-GRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~W~~~l~~p~~~~~~ 164 (194)
+++|++++++.||+|||+|.|.++.+++.+..|.++|||++.++++++||++.+++...+. +.+||.+|+.+|++++++
T Consensus 54 ~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~ 133 (138)
T cd08408 54 KSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCR 133 (138)
T ss_pred eccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeE
Confidence 5677778888888888888888887778788999999999999999999999999998875 679999999999999999
Q ss_pred EEEcc
Q psy6105 165 WYPLM 169 (194)
Q Consensus 165 W~~L~ 169 (194)
||+|+
T Consensus 134 WH~l~ 138 (138)
T cd08408 134 WHTLL 138 (138)
T ss_pred eeecC
Confidence 99985
No 6
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.95 E-value=9.8e-27 Score=167.15 Aligned_cols=121 Identities=23% Similarity=0.432 Sum_probs=102.8
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
+..|.+.++.|+||++.| .+.+||||+|.+.+..+. ..
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~-----------------------------------------~~ 51 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKV-----------------------------------------VK 51 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEE-----------------------------------------ee
Confidence 467899999999999999 888999999999876211 12
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCC--CCCcchhhHHHHhhCCCCceE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSS--FIGIGRDHWLEMLDNPRQPVT 163 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~--~~~~~~~~W~~~l~~p~~~~~ 163 (194)
+++|++++++.||+|||+|.|.++.+++.+..|.|+|||++..+++++||++.|+.. ..+.+.+||.+|+..|+++++
T Consensus 52 ~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~ 131 (137)
T cd08409 52 TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIK 131 (137)
T ss_pred eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCcee
Confidence 556777777888888888888887777777899999999998999999999999975 446779999999999999999
Q ss_pred eEEEc
Q psy6105 164 QWYPL 168 (194)
Q Consensus 164 ~W~~L 168 (194)
+||.|
T Consensus 132 ~WH~l 136 (137)
T cd08409 132 RWHAL 136 (137)
T ss_pred EEEeC
Confidence 99998
No 7
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.95 E-value=8.8e-27 Score=167.28 Aligned_cols=122 Identities=38% Similarity=0.762 Sum_probs=101.7
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..+++.++.|++|+.+|..|.+||||+|++.+.+.... +
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~-----------------------------------------~ 53 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK-----------------------------------------K 53 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccc-----------------------------------------e
Confidence 46899999999999999999999999999976421111 4
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
++|++++++.||+|||+|.|.++.+++....|.|+|||++.++++++||++.|++...+.+.+||.+|+..|++++++||
T Consensus 54 ~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh 133 (136)
T cd08402 54 KKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWH 133 (136)
T ss_pred eeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEE
Confidence 45666666677777777777766555555689999999999999999999999999998899999999999999999999
Q ss_pred Ecc
Q psy6105 167 PLM 169 (194)
Q Consensus 167 ~L~ 169 (194)
.|+
T Consensus 134 ~~~ 136 (136)
T cd08402 134 TLQ 136 (136)
T ss_pred EcC
Confidence 985
No 8
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.94 E-value=6.1e-26 Score=162.90 Aligned_cols=122 Identities=35% Similarity=0.653 Sum_probs=104.0
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
+..+.+.+++|++|+.+|..|.+||||+|++.+..... .
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~-----------------------------------------~ 52 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRI-----------------------------------------S 52 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCcee-----------------------------------------e
Confidence 56799999999999999999999999999997651111 2
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
+++|++++++.||+|+|+|.|.++...+....|.|+|||++.++++++||++.+++...+.+..||.+|+..|++++.+|
T Consensus 53 ~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~W 132 (136)
T cd08404 53 KKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEW 132 (136)
T ss_pred eEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEE
Confidence 45677777777888888888877665555568999999999999999999999999998788999999999999999999
Q ss_pred EEc
Q psy6105 166 YPL 168 (194)
Q Consensus 166 ~~L 168 (194)
|.|
T Consensus 133 h~l 135 (136)
T cd08404 133 HML 135 (136)
T ss_pred Eec
Confidence 998
No 9
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.94 E-value=4.6e-26 Score=163.33 Aligned_cols=121 Identities=31% Similarity=0.558 Sum_probs=102.9
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..++++++.|++|+.+|..|.+||||+|++.+.... ..+
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~-----------------------------------------~~~ 52 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKL-----------------------------------------IKT 52 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcc-----------------------------------------cce
Confidence 468999999999999999999999999998764110 124
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc-chhhHHHHhhCCCCceEeE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI-GRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~W~~~l~~p~~~~~~W 165 (194)
++|++++++.||+|||+|.|.++.+++.+..|.|+|||++..+++++||++.|+....+. +.+||.+|+..|++++++|
T Consensus 53 ~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~w 132 (135)
T cd08410 53 KKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQW 132 (135)
T ss_pred EcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEe
Confidence 677777788888888888888876666666899999999999999999999999877665 6799999999999999999
Q ss_pred EEc
Q psy6105 166 YPL 168 (194)
Q Consensus 166 ~~L 168 (194)
|.|
T Consensus 133 h~l 135 (135)
T cd08410 133 HSL 135 (135)
T ss_pred ecC
Confidence 987
No 10
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.94 E-value=3.4e-26 Score=164.18 Aligned_cols=123 Identities=37% Similarity=0.704 Sum_probs=103.1
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
+..|.+.++.|++|+.+|..|.+||||+|.+.+.+... .
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~-----------------------------------------~ 52 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRV-----------------------------------------E 52 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcc-----------------------------------------c
Confidence 45799999999999999999999999999997641111 1
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
+++|++++++.||+|||+|.|.++.+.+.+..|.|+|||++.++++++||++.+++...+.+.+||.+|+..|++++++|
T Consensus 53 ~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~w 132 (136)
T cd08405 53 KKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQW 132 (136)
T ss_pred cccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEE
Confidence 45666667777777777777776655555568999999999999999999999999999889999999999999999999
Q ss_pred EEcc
Q psy6105 166 YPLM 169 (194)
Q Consensus 166 ~~L~ 169 (194)
|.|+
T Consensus 133 h~l~ 136 (136)
T cd08405 133 HRLK 136 (136)
T ss_pred EecC
Confidence 9984
No 11
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.94 E-value=5.1e-26 Score=162.91 Aligned_cols=123 Identities=52% Similarity=0.919 Sum_probs=102.6
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
.+..++++++.|++|+++|..|.+||||+|++.+.+...
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~----------------------------------------- 50 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRL----------------------------------------- 50 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCccc-----------------------------------------
Confidence 356799999999999999999999999999997642111
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
.+++|++++++.||.|||+|.|.+..+.+....|.|+|||++.++++++||++.|++...+.+.+||.+|+..|++++++
T Consensus 51 ~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~ 130 (134)
T cd08403 51 KKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQ 130 (134)
T ss_pred ceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeE
Confidence 24566666667777777777777665555556799999999999999999999999998888999999999999999999
Q ss_pred EEEc
Q psy6105 165 WYPL 168 (194)
Q Consensus 165 W~~L 168 (194)
||.|
T Consensus 131 wh~~ 134 (134)
T cd08403 131 WHQL 134 (134)
T ss_pred eecC
Confidence 9987
No 12
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.94 E-value=5.9e-26 Score=162.35 Aligned_cols=122 Identities=30% Similarity=0.501 Sum_probs=102.1
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...|.++++.|++|+++|..|.+||||+|.+.++.....
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~----------------------------------------- 50 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKS----------------------------------------- 50 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccC-----------------------------------------
Confidence 457899999999999999999999999999987622111
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
+++|++++++.||+|||+|.|.+...++....|.++|||++..+++++||++.+++...+...+||.+|+.+|++++++|
T Consensus 51 ~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~w 130 (133)
T cd08384 51 KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAW 130 (133)
T ss_pred CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChhee
Confidence 45666666677777777777776655555568999999999988999999999999988888899999999999999999
Q ss_pred EEc
Q psy6105 166 YPL 168 (194)
Q Consensus 166 ~~L 168 (194)
|.|
T Consensus 131 h~l 133 (133)
T cd08384 131 HTL 133 (133)
T ss_pred ecC
Confidence 987
No 13
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.91 E-value=1.7e-23 Score=149.59 Aligned_cols=122 Identities=40% Similarity=0.715 Sum_probs=100.4
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
+..+.+.++.|++|+.++..+.+||||++++.+......
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~----------------------------------------- 51 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLK----------------------------------------- 51 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEee-----------------------------------------
Confidence 467999999999999999999999999999987622222
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
+++|++++++.||.|||+|.|.+....+....|.|+|||++.++++++||++.++++..+.+.+||.+|+..|++++++|
T Consensus 52 ~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~w 131 (134)
T cd00276 52 KKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARW 131 (134)
T ss_pred eecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEe
Confidence 44555566666677777777766555444568999999999888999999999999997778999999999999999999
Q ss_pred EEc
Q psy6105 166 YPL 168 (194)
Q Consensus 166 ~~L 168 (194)
|.|
T Consensus 132 h~~ 134 (134)
T cd00276 132 HKL 134 (134)
T ss_pred eeC
Confidence 987
No 14
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.91 E-value=5.9e-24 Score=147.28 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=84.3
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...|.+.++.|++|+ . .|.+||||+|+|++..+ . .
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k-~-----------------------------------------~ 47 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEG-Q-----------------------------------------K 47 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcC-c-----------------------------------------c
Confidence 456889999999998 3 46699999999986411 1 1
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC--CcchhhHHH
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI--GIGRDHWLE 153 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~--~~~~~~W~~ 153 (194)
+++|+++++++||+|||+|.|.++.+++.+..|.|+|||+|.++++++||++.+++... +.|.+||.+
T Consensus 48 k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 48 EAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 45677777777888888888888888888889999999999999999999999999964 678889975
No 15
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.90 E-value=5.7e-23 Score=151.41 Aligned_cols=125 Identities=25% Similarity=0.398 Sum_probs=100.1
Q ss_pred CCCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCe
Q psy6105 3 SKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGK 82 (194)
Q Consensus 3 ~~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~ 82 (194)
++....+++.+++|++|+++|..|.+||||+|++.+......
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~-------------------------------------- 64 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKS-------------------------------------- 64 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCc--------------------------------------
Confidence 345667999999999999999999999999999987522222
Q ss_pred EeEEeeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC-------------Ccch
Q psy6105 83 RIRKKRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI-------------GIGR 148 (194)
Q Consensus 83 ~~~~~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~-------------~~~~ 148 (194)
+++|++++++.||+|||+|.|.+ ..+++.+..|.|+|||++.++++++||++.+++..+ +.+.
T Consensus 65 ---~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~ 141 (162)
T cd04020 65 ---KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEI 141 (162)
T ss_pred ---ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHH
Confidence 45666666666777777776663 233445568999999999999999999999999874 4567
Q ss_pred hhHHHHhhCCCCceEeEEEc
Q psy6105 149 DHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L 168 (194)
.||.+|+++|++.+.+-.+|
T Consensus 142 ~~w~~~~~~p~~~~~~~~~~ 161 (162)
T cd04020 142 LLWQKMLDNPNSWVEGTLPL 161 (162)
T ss_pred HHHHHHHhCCCCeEEEEEec
Confidence 89999999999999988877
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.90 E-value=9.7e-23 Score=144.39 Aligned_cols=125 Identities=20% Similarity=0.295 Sum_probs=92.1
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
.|++++.|++|+++|..|.+||||+|.++.. +.+|+++++|+||+|||.|.|.+...
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~-----~~kT~v~~~t~nP~Wne~f~F~v~~~------------------ 57 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKE-----KYSTSVKEKTTSPVWKEECSFELPGL------------------ 57 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCe-----eeeeeeecCCCCCEeCceEEEEecCc------------------
Confidence 4789999999999999999999999999654 56777777777777777776654300
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
..++.....|.++|||++.++++++||++.|+++. +...++....+||+|
T Consensus 58 --------------------~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~----------l~~~~~~~~~~W~~L 107 (126)
T cd08682 58 --------------------LSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLND----------LDEDKGRRRTRWFKL 107 (126)
T ss_pred --------------------ccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHH----------hhccCCCcccEEEEC
Confidence 00112335899999999999899999999999974 333456678899999
Q ss_pred cCCCCCCccccCCCCcceee
Q psy6105 169 METVPGQIPLSHSSNLPSSL 188 (194)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (194)
.+... .+....|++.++|
T Consensus 108 ~~~~~--~~~~~~Gei~l~~ 125 (126)
T cd08682 108 ESKPG--KDDKERGEIEVDI 125 (126)
T ss_pred cCCCC--CCccccceEEEEe
Confidence 87543 3344556666544
No 17
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.89 E-value=2e-22 Score=145.43 Aligned_cols=114 Identities=28% Similarity=0.444 Sum_probs=89.2
Q ss_pred eeEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 7 RSFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
..|.+.++.|+||+++| ..|.+||||+++|.++.+.. .
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~-----------------------------------------~ 67 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI-----------------------------------------A 67 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc-----------------------------------------c
Confidence 46889999999999874 67899999999999872211 2
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEE-ecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVI-DYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~-d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
+++|+++++++||+|||+|.|.+. +.+..|.|+|| |++.++++++||++.|+|+.+. .+.....
T Consensus 68 k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~ 132 (146)
T cd04028 68 KKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD------------LSNLVIG 132 (146)
T ss_pred ceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc------------CCCCcee
Confidence 556666677777777777777775 34568999999 5888889999999999999763 2556789
Q ss_pred EEEccCCCCCCc
Q psy6105 165 WYPLMETVPGQI 176 (194)
Q Consensus 165 W~~L~~~~~~~~ 176 (194)
||+|.+..+...
T Consensus 133 Wy~L~~~~~~~~ 144 (146)
T cd04028 133 WYKLFPTSSLVD 144 (146)
T ss_pred EEecCCcccccC
Confidence 999998776543
No 18
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.89 E-value=8.2e-23 Score=143.94 Aligned_cols=108 Identities=27% Similarity=0.472 Sum_probs=87.3
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..+++.++.|++|+++| .|.+||||+|++.++.... .+
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~-----------------------------------------~~ 50 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKT-----------------------------------------TK 50 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccC-----------------------------------------Cc
Confidence 46899999999999999 9999999999999862111 25
Q ss_pred eeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
++|++++++.||+|||+|.|.+ +.+++....|.|+|||++.++++++||++.|+|..+.. +.....|
T Consensus 51 ~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W 118 (122)
T cd08381 51 RKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDL------------SQETEKW 118 (122)
T ss_pred eeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEecccccc------------CCCccce
Confidence 6677777777777777777775 44556667999999999999999999999999997642 4556899
Q ss_pred EEc
Q psy6105 166 YPL 168 (194)
Q Consensus 166 ~~L 168 (194)
|+|
T Consensus 119 ~~L 121 (122)
T cd08381 119 YPL 121 (122)
T ss_pred EEC
Confidence 987
No 19
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.89 E-value=1.3e-22 Score=143.63 Aligned_cols=111 Identities=27% Similarity=0.446 Sum_probs=89.7
Q ss_pred ceeEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 6 SRSFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
...|.+.++.|+||+++|.. |.+||||++++.|+....
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~----------------------------------------- 52 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNR----------------------------------------- 52 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCcc-----------------------------------------
Confidence 45799999999999999986 899999999999862111
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
.+++|++++++.||+|||+|.|.+..+++....|.++|||++.++++++||++.|+|.... ++.....
T Consensus 53 ~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~------------~~~~~~~ 120 (125)
T cd08393 53 GKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD------------WSNTQPT 120 (125)
T ss_pred ccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc------------cCCCCcc
Confidence 1456777777777777777777776666666799999999999999999999999999763 2456788
Q ss_pred EEEcc
Q psy6105 165 WYPLM 169 (194)
Q Consensus 165 W~~L~ 169 (194)
||+|+
T Consensus 121 W~~L~ 125 (125)
T cd08393 121 WYPLQ 125 (125)
T ss_pred eEECc
Confidence 99985
No 20
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.88 E-value=2.9e-22 Score=142.14 Aligned_cols=113 Identities=23% Similarity=0.355 Sum_probs=91.1
Q ss_pred ceeEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 6 SRSFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
...|.+.++.|+||+++|.. |.+||||++++.|+.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~----------------------------------------- 52 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHN----------------------------------------- 52 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccc-----------------------------------------
Confidence 46789999999999999975 999999999999872111
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
.+++|++++++.||+|||+|.|.++.+++.+..|.++|||++.++++++||++.|+|.... +........+
T Consensus 53 ~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~---------~~~~~~~~~~ 123 (128)
T cd08392 53 SKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD---------FEDTDSQRFL 123 (128)
T ss_pred ceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc---------cCCCCccccc
Confidence 2557777777778888888888877767777899999999999999999999999998763 1122456789
Q ss_pred EEEc
Q psy6105 165 WYPL 168 (194)
Q Consensus 165 W~~L 168 (194)
||+|
T Consensus 124 W~~l 127 (128)
T cd08392 124 WYPL 127 (128)
T ss_pred eEEC
Confidence 9998
No 21
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.88 E-value=4.2e-22 Score=140.92 Aligned_cols=111 Identities=27% Similarity=0.442 Sum_probs=88.5
Q ss_pred ceeEEEeeccCCCCCCCCC-CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 6 SRSFRADNYCRPTIGNRSI-PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~-~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
...|.+.++.|++|+++|. .|.+||||+|++.|+.....
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~---------------------------------------- 53 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQS---------------------------------------- 53 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcccc----------------------------------------
Confidence 5578999999999999876 48999999999988622121
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
+++|++++++.||+|||+|.|.++.+++.+..|.|+|||++.++++++||++.|++.... +....+.
T Consensus 54 -~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~ 120 (125)
T cd04029 54 -KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN------------FDSQHEE 120 (125)
T ss_pred -ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc------------ccCCccc
Confidence 446666666677777777777776656666789999999999999999999999999773 3677899
Q ss_pred EEEcc
Q psy6105 165 WYPLM 169 (194)
Q Consensus 165 W~~L~ 169 (194)
||+|+
T Consensus 121 w~~l~ 125 (125)
T cd04029 121 CLPLH 125 (125)
T ss_pred EEECc
Confidence 99985
No 22
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.88 E-value=2.8e-22 Score=141.27 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=92.9
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
....|.+.++.|+||++++..|.+||||+++|.|+.++ ..
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~----------------------------------------~~ 51 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSS----------------------------------------TS 51 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCC----------------------------------------CC
Confidence 34579999999999999999999999999999987211 00
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
.+++|++++++.||+|||+|.|.++.+++.+..|.++||+++.++++++||++.|+|+.+.. .+....+
T Consensus 52 ~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~-----------~~~~~~~ 120 (124)
T cd08680 52 CLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFES-----------SEEMSTK 120 (124)
T ss_pred ceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccC-----------CCccccc
Confidence 15577777788888888888999888888889999999999999999999999999986631 1335678
Q ss_pred EEEc
Q psy6105 165 WYPL 168 (194)
Q Consensus 165 W~~L 168 (194)
||+|
T Consensus 121 Wy~l 124 (124)
T cd08680 121 WYNL 124 (124)
T ss_pred cccC
Confidence 9876
No 23
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.87 E-value=2.4e-21 Score=135.61 Aligned_cols=111 Identities=24% Similarity=0.339 Sum_probs=83.6
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcC--CeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCE--GKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~--~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
.|++.++.|++|+.+| .|.+||||+|++... +.+. +
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~-----------------------------------------~ 38 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKK-----------------------------------------R 38 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccc-----------------------------------------c
Confidence 3789999999999998 499999999998631 0111 2
Q ss_pred EeeceeecCCCCCcccceEEEEecCC-CCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPAS-NVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~-~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
+++|+++.+++||+|||+|.|.+..+ .+....|.+.|||++..+++++||++.+++..+. ++.....
T Consensus 39 k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~------------~~~~~~~ 106 (120)
T cd08395 39 KFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIA------------QAGSCAC 106 (120)
T ss_pred EeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCc------------CCCcEEE
Confidence 44566666666666666666766543 3445689999999998888999999999998763 3667889
Q ss_pred EEEccCCC
Q psy6105 165 WYPLMETV 172 (194)
Q Consensus 165 W~~L~~~~ 172 (194)
|++|....
T Consensus 107 w~~L~~~~ 114 (120)
T cd08395 107 WLPLGRRI 114 (120)
T ss_pred EEECcCcc
Confidence 99997653
No 24
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.86 E-value=4.3e-21 Score=139.10 Aligned_cols=127 Identities=24% Similarity=0.365 Sum_probs=94.8
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+++.++.|++|++ .+|.+||||+|++.+...+..+++|+++++|+||+|||+|.|.+..+ .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~---------~------- 62 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTID---------S------- 62 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecc---------c-------
Confidence 37899999999988 67999999999999854344577889999999999999998875411 0
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
.+ +.+.+.++.+++....|.|.|||++.++++++||++.|++..+..+ ......||+
T Consensus 63 ~~------------~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~ 119 (148)
T cd04010 63 SP------------EKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYF 119 (148)
T ss_pred cc------------ccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceee
Confidence 00 1112334444555568999999999888999999999999876421 135689999
Q ss_pred ccCCCCCC
Q psy6105 168 LMETVPGQ 175 (194)
Q Consensus 168 L~~~~~~~ 175 (194)
|.+...-.
T Consensus 120 L~~~~~~~ 127 (148)
T cd04010 120 LQPREEKS 127 (148)
T ss_pred cCCccccc
Confidence 98875333
No 25
>KOG0696|consensus
Probab=99.85 E-value=2.3e-22 Score=163.18 Aligned_cols=114 Identities=29% Similarity=0.494 Sum_probs=95.6
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+-+++.-|+||.+||-+|.+||||++.|.|+.+. ..++
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~-----------------------------------------~sKq 219 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKN-----------------------------------------ESKQ 219 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcc-----------------------------------------hhhh
Confidence 46788999999999999999999999999987221 1367
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
+|++++.++||+|||+|+|++.+.+.+ +.|.|+|||||..++++|+|...++++++ + ..++.+||+
T Consensus 220 KTkTik~~LNP~wNEtftf~Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl----------~---K~p~~GWyK 285 (683)
T KOG0696|consen 220 KTKTIKATLNPVWNETFTFKLKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISEL----------Q---KAPVDGWYK 285 (683)
T ss_pred hhhhhhhhcCccccceeEEeccccccc-ceeEEEEecccccccccccceecccHHHH----------h---hcchhhHHH
Confidence 777788888888888888888777754 58999999999999999999999999854 3 556889999
Q ss_pred ccCCCCCCc
Q psy6105 168 LMETVPGQI 176 (194)
Q Consensus 168 L~~~~~~~~ 176 (194)
|+++++|+.
T Consensus 286 lLsqeEGEy 294 (683)
T KOG0696|consen 286 LLSQEEGEY 294 (683)
T ss_pred HhhhhcCce
Confidence 999998875
No 26
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.85 E-value=4.8e-21 Score=134.30 Aligned_cols=108 Identities=22% Similarity=0.414 Sum_probs=84.4
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...|.+.+++|+||+++| .|.+||||+++|+|+.... .
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~-----------------------------------------~ 48 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVR-----------------------------------------F 48 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCc-----------------------------------------c
Confidence 457999999999999999 8899999999999862111 1
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC-CCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG-SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~-~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
+++|++++++.||+|||+|.|.+..+++.. .|.++|||++... .+++||++.|++.++. .+..+.+
T Consensus 49 ~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~ 115 (119)
T cd08685 49 RQKTSTVPDSANPLFHETFSFDVNERDYQK-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIV------------NQKEISG 115 (119)
T ss_pred eEeCccccCCCCCccccEEEEEcChHHhCC-EEEEEEECCCCCcCCCEEEEEEEecHHHhc------------cCccccc
Confidence 556777777777777777777776555443 6889999988775 4789999999998552 2566789
Q ss_pred EEEc
Q psy6105 165 WYPL 168 (194)
Q Consensus 165 W~~L 168 (194)
||.|
T Consensus 116 Wy~l 119 (119)
T cd08685 116 WYYL 119 (119)
T ss_pred eEeC
Confidence 9987
No 27
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.84 E-value=2.2e-20 Score=131.93 Aligned_cols=110 Identities=22% Similarity=0.453 Sum_probs=85.6
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...+++.++.|++|+++|..|.+||||+|++.+.. ..
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~----------------------------------------- 51 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR--SN----------------------------------------- 51 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC--CC-----------------------------------------
Confidence 34689999999999999999999999999998651 11
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
.++|++++++.||+|||+|.|.++..++....|.|+|||++.++++++||++.++++++.. +.....|
T Consensus 52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~------------~~~~~~W 119 (124)
T cd08387 52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDL------------SEKLDLW 119 (124)
T ss_pred cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccC------------CCCcceE
Confidence 2345555556666666666666655555556899999999999999999999999997642 4467899
Q ss_pred EEccC
Q psy6105 166 YPLME 170 (194)
Q Consensus 166 ~~L~~ 170 (194)
|+|++
T Consensus 120 ~~l~~ 124 (124)
T cd08387 120 RKIQS 124 (124)
T ss_pred EECcC
Confidence 99974
No 28
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=1.5e-20 Score=133.25 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=85.7
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.|++++++|++|+++|..|.+||||++++++. +.+|+++++++||.|||.|.|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-----~~rT~v~~~t~nP~Wne~f~f---------------------- 53 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ-----KKRTRTKPKDLNPVWNEKLVF---------------------- 53 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCE-----EecceeEcCCCCCccceEEEE----------------------
Confidence 37899999999999999999999999998753 445655555555555555554
Q ss_pred eceeecCCCCCcccceEEEEecCC-CCCCceEEEEEEecCCCC-CCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPAS-NVNDVSLIIKVIDYDRIG-SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~-~l~~~~l~i~V~d~~~~~-~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
.+... .+....|.|+|||++.++ ++++||++.++++.+. .++....+|
T Consensus 54 -------------------~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~-----------~~~~~~~~w 103 (127)
T cd04022 54 -------------------NVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFV-----------PPSEAVVQR 103 (127)
T ss_pred -------------------EccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcC-----------CCCCccceE
Confidence 33221 122347999999998886 8999999999998653 235667899
Q ss_pred EEccCCCCCCccccCCCCcce
Q psy6105 166 YPLMETVPGQIPLSHSSNLPS 186 (194)
Q Consensus 166 ~~L~~~~~~~~~~~~~~~~~~ 186 (194)
|+|.......+ .+|...|.+
T Consensus 104 ~~L~~~~~~~~-~~G~l~l~~ 123 (127)
T cd04022 104 YPLEKRGLFSR-VRGEIGLKV 123 (127)
T ss_pred eEeeeCCCCCC-ccEEEEEEE
Confidence 99987543332 344444433
No 29
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.84 E-value=2.4e-20 Score=131.78 Aligned_cols=110 Identities=19% Similarity=0.335 Sum_probs=90.1
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
.+..|.+.++.|+||+++|.+|.+||||++.+.|.. ..
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~--~~---------------------------------------- 51 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK--KQ---------------------------------------- 51 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC--cc----------------------------------------
Confidence 456899999999999999999999999999998761 11
Q ss_pred EEeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT 163 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~ 163 (194)
+++|+++++ .||+|||+|.|. +..+++.+..|.++|||++.++++++||++.|+|+... ++....
T Consensus 52 -~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~------------~~~~~~ 117 (124)
T cd08389 52 -RAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLN------------LEGETT 117 (124)
T ss_pred -eeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccC------------CCCCce
Confidence 445666555 677777777776 66666777799999999999999999999999999764 366789
Q ss_pred eEEEccC
Q psy6105 164 QWYPLME 170 (194)
Q Consensus 164 ~W~~L~~ 170 (194)
.||+|+|
T Consensus 118 ~w~~L~p 124 (124)
T cd08389 118 VWLTLEP 124 (124)
T ss_pred EEEeCCC
Confidence 9999975
No 30
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.84 E-value=1.7e-20 Score=129.77 Aligned_cols=106 Identities=23% Similarity=0.419 Sum_probs=80.0
Q ss_pred EEEeeccCCCCCCCCC-CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 9 FRADNYCRPTIGNRSI-PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~-~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
+.+++++|++|+.+|. .|.+||||++++++. ++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~----------------------------------------------~~ 34 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST----------------------------------------------TY 34 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe----------------------------------------------eE
Confidence 4789999999999984 788999999988532 34
Q ss_pred eceeecCCCCCcc-cceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhh-CCCCceEeE
Q psy6105 88 RTSVKKNSLNPFY-NEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLD-NPRQPVTQW 165 (194)
Q Consensus 88 kT~~~~~t~nP~~-~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~-~p~~~~~~W 165 (194)
+|+++++++||+| ||+|.|.++...+.+..|.|+|||++.++++++||++.+++..+ +. ..+..+.+|
T Consensus 35 kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l----------~~~~~~~~~~~w 104 (110)
T cd08688 35 KTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL----------LLKDSVSQISGW 104 (110)
T ss_pred ecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHh----------cccCCccccCCe
Confidence 4555555566666 66666666555444468999999999999999999999999844 33 124458899
Q ss_pred EEccC
Q psy6105 166 YPLME 170 (194)
Q Consensus 166 ~~L~~ 170 (194)
|+|.+
T Consensus 105 ~~l~~ 109 (110)
T cd08688 105 FPIYD 109 (110)
T ss_pred EEccc
Confidence 99975
No 31
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=5.7e-20 Score=128.86 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=84.2
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.|+++++.|++++..+ .|.+||||+|.++.. +.+|+++.+
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~-----~~kT~v~~~---------------------------------- 42 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHA-----VYETPTAYN---------------------------------- 42 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECCE-----EEEeEEccC----------------------------------
Confidence 5899999999988777 789999999999643 334444433
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCC-CCcchhhHHHHhhCCCCceEeEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSF-IGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~-~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
++.||+|||+|.|.+.... ..|.|+|||+|.+++|++||++.+++.. +. +++.+..||
T Consensus 43 ------~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~------------~g~~~~~W~ 101 (121)
T cd04016 43 ------GAKNPRWNKTIQCTLPEGV---DSIYIEIFDERAFTMDERIAWTHITIPESVF------------NGETLDDWY 101 (121)
T ss_pred ------CCCCCccCeEEEEEecCCC---cEEEEEEEeCCCCcCCceEEEEEEECchhcc------------CCCCccccE
Confidence 1455556665666654321 3799999999999999999999999962 31 366789999
Q ss_pred EccCCCCCCccccCCCCcceeeee
Q psy6105 167 PLMETVPGQIPLSHSSNLPSSLSC 190 (194)
Q Consensus 167 ~L~~~~~~~~~~~~~~~~~~~~~~ 190 (194)
+|.+.... ...|.+.++|+|
T Consensus 102 ~L~~~~~~----~~~g~i~l~l~y 121 (121)
T cd04016 102 SLSGKQGE----DKEGMINLVFSY 121 (121)
T ss_pred eCcCccCC----CCceEEEEEEeC
Confidence 99874422 244566655654
No 32
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.84 E-value=3.3e-20 Score=130.95 Aligned_cols=109 Identities=28% Similarity=0.512 Sum_probs=84.8
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
+..+++.+++|++|+++|..|.+||||+|++.+.. ..
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~--~~----------------------------------------- 51 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KK----------------------------------------- 51 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC--CC-----------------------------------------
Confidence 45799999999999999999999999999998751 11
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
+++|++++++.||+|||+|.|.+...++....|.|+|||++.++++++||++.++++.+.. +...++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~------------~~~~~~W 119 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL------------GHVTEEW 119 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccC------------CCCcceE
Confidence 3355555556666666666666654444456899999999999999999999999997642 5567889
Q ss_pred EEcc
Q psy6105 166 YPLM 169 (194)
Q Consensus 166 ~~L~ 169 (194)
+.|.
T Consensus 120 ~~l~ 123 (124)
T cd08385 120 RDLE 123 (124)
T ss_pred EEcc
Confidence 9885
No 33
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=4.3e-20 Score=134.38 Aligned_cols=127 Identities=21% Similarity=0.209 Sum_probs=89.9
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
|++.++.|++|+++|..|.+||||+|.+++. ..+|+++.++
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~-----~~kTk~~~~~---------------------------------- 42 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ-----VLRTRPSQTR---------------------------------- 42 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCE-----EeeeEeccCC----------------------------------
Confidence 7899999999999999999999999999753 4455544331
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
+.||+|||.|.|.+.... ...|.|.|+|++..+++++||++.|++..+..+ ..++....+||+|
T Consensus 43 ------t~nP~WNE~F~f~v~~~~--~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~--------~~~~~~~~~W~~L 106 (150)
T cd04019 43 ------NGNPSWNEELMFVAAEPF--EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERR--------VDDRPVPSRWFSL 106 (150)
T ss_pred ------CCCCcccCcEEEEecCcc--CCeEEEEEEEecCCCCCCeEEEEEEEHHHCccc--------CCCCccCCceEEC
Confidence 345555555555543211 237889999999888899999999999876432 1235678999999
Q ss_pred cCCCC---CCccccCCCCcceeeee
Q psy6105 169 METVP---GQIPLSHSSNLPSSLSC 190 (194)
Q Consensus 169 ~~~~~---~~~~~~~~~~~~~~~~~ 190 (194)
.+... +.++....|.+.+.|++
T Consensus 107 ~~~~~~~~~~k~~k~~g~l~l~i~~ 131 (150)
T cd04019 107 ERPGGAMEQKKKRKFASRIHLRLCL 131 (150)
T ss_pred cCCCCcccccccCcccccEEEEEEe
Confidence 98643 22344556666666654
No 34
>KOG2059|consensus
Probab=99.83 E-value=1.5e-20 Score=159.50 Aligned_cols=167 Identities=22% Similarity=0.403 Sum_probs=135.1
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-----------------
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP----------------- 68 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~----------------- 68 (194)
..++++++.-|+||++.+..|.+||||.|.+..+ ...+|.++.+++.|.|.|.|+|.++
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E----~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~ 79 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE----EVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKR 79 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecch----hhhhhhhhhhhcCCccccceEEecCcceeeEEEEEecccccc
Confidence 4689999999999999999999999999999864 4799999999999999999999988
Q ss_pred -----------------------------------------------------------------------CCceeEEEE
Q psy6105 69 -----------------------------------------------------------------------ANPYVKVYL 77 (194)
Q Consensus 69 -----------------------------------------------------------------------~dpyv~v~l 77 (194)
+|||++|..
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~ 159 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL 159 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee
Confidence 899999998
Q ss_pred EcCCeEeEEeeceeecCCCCCcccceEEEEecCCC-------------CCCceEEEEEEe-cCCCCCCceeEEEEeCCCC
Q psy6105 78 VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASN-------------VNDVSLIIKVID-YDRIGSDELMGCTAIGSSF 143 (194)
Q Consensus 78 ~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~-------------l~~~~l~i~V~d-~~~~~~~~~iG~~~i~l~~ 143 (194)
.+..+ ....+|.+++.+.+|.|+|.|.|.+..+. -....|.+++|+ .+....++|+|++.+++..
T Consensus 160 ~g~~~-~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~ 238 (800)
T KOG2059|consen 160 CGPSK-LKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDV 238 (800)
T ss_pred cccch-hhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhh
Confidence 65433 33479999999999999999999875541 012468889998 5666679999999999975
Q ss_pred CCcchhhHHHHhhCCCCceEeEEEccCCCCCCcccc--CCCCcceeee
Q psy6105 144 IGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS--HSSNLPSSLS 189 (194)
Q Consensus 144 ~~~~~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~--~~~~~~~~~~ 189 (194)
.. .....+.||.|+|.+.|++... ..|.+.+.+.
T Consensus 239 ~~------------~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~ 274 (800)
T KOG2059|consen 239 LR------------QKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVT 274 (800)
T ss_pred hh------------hccCccceEEEecCCCcccCCCCCCccceeeeEE
Confidence 42 1456689999999998887544 3334444443
No 35
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.83 E-value=4.3e-20 Score=130.81 Aligned_cols=111 Identities=25% Similarity=0.447 Sum_probs=86.2
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...+++.+++|++|+.+|..+.+||||+|.+.+++....
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~----------------------------------------- 53 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKST----------------------------------------- 53 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCc-----------------------------------------
Confidence 357899999999999999999999999999987522122
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC--CCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI--GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT 163 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~--~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~ 163 (194)
+++|++++++.||+|||+|.|.+....+....|.|.|||++.+ +++++||++.+++..+.. +....
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~------------~~~~~ 121 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL------------SKGFT 121 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccc------------cCCcc
Confidence 4566666666677777777776655555556899999998875 689999999999987632 45678
Q ss_pred eEEEcc
Q psy6105 164 QWYPLM 169 (194)
Q Consensus 164 ~W~~L~ 169 (194)
+||+|.
T Consensus 122 ~W~~L~ 127 (127)
T cd04030 122 QWYDLT 127 (127)
T ss_pred ceEECc
Confidence 999984
No 36
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=7.7e-20 Score=129.04 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=78.0
Q ss_pred EEEeeccCCC---CCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 9 FRADNYCRPT---IGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 9 ~r~~~~~a~~---l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
|.+++++|++ |.++|..|.+||||+|.++.. +.+|+++++++||+|||+|.
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~-----~~rTk~~~~~~nP~WnE~f~--------------------- 55 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPK-----WVRTRTVEDSSNPRWNEQYT--------------------- 55 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCE-----EeEcCcccCCCCCcceeEEE---------------------
Confidence 6799999999 899999999999999998654 44555555555555555555
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC------CCCceeEEEEeCCCCCCcchhhHHHHhhCCC
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI------GSDELMGCTAIGSSFIGIGRDHWLEMLDNPR 159 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~------~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~ 159 (194)
|.+.... ..|.|+|||++.+ .++++||++.+++..+. .+
T Consensus 56 --------------------f~v~~~~---~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~------------~~ 100 (126)
T cd08379 56 --------------------WPVYDPC---TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLE------------DD 100 (126)
T ss_pred --------------------EEecCCC---CEEEEEEEECCCccccccCCCCceEEEEEEEHHHcc------------CC
Confidence 4442211 2689999998876 38999999999998653 25
Q ss_pred CceEeEEEccCCC
Q psy6105 160 QPVTQWYPLMETV 172 (194)
Q Consensus 160 ~~~~~W~~L~~~~ 172 (194)
.....||+|.+..
T Consensus 101 ~~~~~~~~L~~~~ 113 (126)
T cd08379 101 RVYAHSYPLLSLN 113 (126)
T ss_pred CEEeeEEEeEeCC
Confidence 6678999998755
No 37
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.83 E-value=4.9e-20 Score=129.81 Aligned_cols=110 Identities=29% Similarity=0.492 Sum_probs=86.7
Q ss_pred ceeEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 6 SRSFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
...+++.++.|++|+.++ ..|.+||||+|++.+......
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~---------------------------------------- 52 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQS---------------------------------------- 52 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCc----------------------------------------
Confidence 457899999999999999 788999999999987521111
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
+++|++++++.||+|||+|.|.+...++....|.|+|||++.++++++||++.++++... .+....+
T Consensus 53 -~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~------------~~~~~~~ 119 (123)
T cd08521 53 -KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD------------LDSQQSE 119 (123)
T ss_pred -eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEeccccc------------ccCCCcc
Confidence 456666666777777777777766555555689999999999999999999999998763 2556789
Q ss_pred EEEc
Q psy6105 165 WYPL 168 (194)
Q Consensus 165 W~~L 168 (194)
||+|
T Consensus 120 w~~l 123 (123)
T cd08521 120 WYPL 123 (123)
T ss_pred EEEC
Confidence 9987
No 38
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.83 E-value=1.1e-19 Score=129.00 Aligned_cols=113 Identities=21% Similarity=0.333 Sum_probs=83.4
Q ss_pred ceeEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 6 SRSFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
+..+++.+++|++|+++|.. |.+||||+|.+.+. ..++.+|+++++|+||.|||+|.|.
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~--~~~~~kT~v~~~t~nP~wnE~F~f~------------------ 74 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE--KEHKVKTRVLRKTRNPVYDETFTFY------------------ 74 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC--cCceeeccEEcCCCCCceeeEEEEc------------------
Confidence 46799999999999999986 89999999999876 2223455555555555555555541
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
.+...++.+..|.++|||++.++++++||++.++|..+.. ..+.+.+.
T Consensus 75 ----------------------~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~ 122 (128)
T cd08388 75 ----------------------GIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLV 122 (128)
T ss_pred ----------------------ccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEE
Confidence 2333333445899999999999999999999999997742 11456889
Q ss_pred EEEccC
Q psy6105 165 WYPLME 170 (194)
Q Consensus 165 W~~L~~ 170 (194)
|.+|+|
T Consensus 123 ~~~~~~ 128 (128)
T cd08388 123 SREIQP 128 (128)
T ss_pred EEeccC
Confidence 999975
No 39
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=9.2e-20 Score=128.75 Aligned_cols=111 Identities=27% Similarity=0.441 Sum_probs=84.1
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
....+++.+++|++|+.+|..+.+||||+|++.+......
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~---------------------------------------- 53 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKS---------------------------------------- 53 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccc----------------------------------------
Confidence 3567999999999999999999999999999987521111
Q ss_pred EEeeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT 163 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~ 163 (194)
+++|++++++.||+|||+|.|.+ ...++....|.|+|||++.++++++||++.++++... .....
T Consensus 54 -~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-------------~~~~~ 119 (125)
T cd04031 54 -KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-------------LDDEP 119 (125)
T ss_pred -cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-------------ccCCc
Confidence 45666666667777777777764 2234445689999999999999999999999998621 12236
Q ss_pred eEEEcc
Q psy6105 164 QWYPLM 169 (194)
Q Consensus 164 ~W~~L~ 169 (194)
.||+|+
T Consensus 120 ~W~~L~ 125 (125)
T cd04031 120 HWYPLQ 125 (125)
T ss_pred ceEECc
Confidence 899985
No 40
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=1.8e-19 Score=126.75 Aligned_cols=109 Identities=25% Similarity=0.319 Sum_probs=78.7
Q ss_pred eEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 8 SFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
+++++++.|++|++++ ..|.+||||+|.+... ...+|+++++|
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~----~~~kT~v~~kt-------------------------------- 44 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE----EVFRTKTVEKS-------------------------------- 44 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCc----cEEEeeEEECC--------------------------------
Confidence 4778899999999974 5678999999998532 13445444444
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
+||+|||+|.|.++.. ...|.+.|||++.++++++||.+.++++.+.. +.....||
T Consensus 45 ---------~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~------------~~~~~~w~ 100 (121)
T cd08401 45 ---------LCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHK------------YYGKDTWF 100 (121)
T ss_pred ---------CCCccCCeEEEEcCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccC------------CCCcEeeE
Confidence 4555555555554422 13789999999999999999999999986532 55678999
Q ss_pred EccCCCCCCc
Q psy6105 167 PLMETVPGQI 176 (194)
Q Consensus 167 ~L~~~~~~~~ 176 (194)
+|++...+.+
T Consensus 101 ~L~~~~~~~~ 110 (121)
T cd08401 101 PLQPVDADSE 110 (121)
T ss_pred EEEccCCCCc
Confidence 9998755443
No 41
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.82 E-value=2e-19 Score=127.04 Aligned_cols=110 Identities=25% Similarity=0.480 Sum_probs=82.5
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
...+++.+++|++|+.+|..|.+||||++.+.++. ..+.+|+++++++||.|||+|.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~~~kT~v~~~t~~P~Wne~f~--------------------- 71 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNLNPHWNETFL--------------------- 71 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC--CcceeeeeecCCCCCccceeEE---------------------
Confidence 56799999999999999999999999999997651 2234555555555555555554
Q ss_pred EeeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
|.+ +.+.+....|.++|||++.++++++||++.+++..+. .+.....
T Consensus 72 --------------------f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~ 119 (125)
T cd08386 72 --------------------FEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTF 119 (125)
T ss_pred --------------------EcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcce
Confidence 432 1222334589999999999999999999999999764 2566789
Q ss_pred EEEccC
Q psy6105 165 WYPLME 170 (194)
Q Consensus 165 W~~L~~ 170 (194)
||.|+|
T Consensus 120 W~~l~~ 125 (125)
T cd08386 120 WKDLKP 125 (125)
T ss_pred EEecCC
Confidence 999975
No 42
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=5.1e-19 Score=124.71 Aligned_cols=106 Identities=21% Similarity=0.392 Sum_probs=78.2
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.|++++++|++|+++|..|.+||||+|++... ..+|+++++|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~-----~~kT~v~~~t~-------------------------------- 43 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ-----TLETSVVKKSC-------------------------------- 43 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCE-----EEeceeecCCC--------------------------------
Confidence 37899999999999999999999999998532 34455555554
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
||+|||+|.|.+.... ...|.|+|||++.++++++||++.+++..+.. +.....||.
T Consensus 44 ---------nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~------------~~~~~~w~~ 100 (123)
T cd04025 44 ---------YPRWNEVFEFELMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ------------AKQEEGWFR 100 (123)
T ss_pred ---------CCccCcEEEEEcCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHccc------------CCCCCCEEE
Confidence 4555555555443322 24799999999999999999999999975531 334578999
Q ss_pred ccCCCC
Q psy6105 168 LMETVP 173 (194)
Q Consensus 168 L~~~~~ 173 (194)
|.+...
T Consensus 101 L~~~~~ 106 (123)
T cd04025 101 LLPDPR 106 (123)
T ss_pred CCCCCC
Confidence 998653
No 43
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=4.5e-19 Score=126.59 Aligned_cols=129 Identities=22% Similarity=0.343 Sum_probs=91.4
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
|++++++|++|+.+|..|.+||||+|++.+.... ....+++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~---------------------------------------~~~~~~k 42 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGN---------------------------------------GEIDSVQ 42 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCC---------------------------------------Cccccee
Confidence 7899999999999999999999999999854000 0011345
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCC---CceEeE
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPR---QPVTQW 165 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~---~~~~~W 165 (194)
|.+++++.||+|||+|.|.+... ...|.++|||++.++++++||++.++++++..+ .+. .....|
T Consensus 43 T~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~---------~~~~~~~~~~~~ 110 (133)
T cd04033 43 TKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTE---------TPGNERRYTFKD 110 (133)
T ss_pred eeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCc---------Cccccccccchh
Confidence 66666667777777777766432 247899999999999999999999999865321 111 245699
Q ss_pred EEccCCCCCCccccCCCCcceeeeec
Q psy6105 166 YPLMETVPGQIPLSHSSNLPSSLSCL 191 (194)
Q Consensus 166 ~~L~~~~~~~~~~~~~~~~~~~~~~~ 191 (194)
|+|.+..... ...|++.+++.||
T Consensus 111 ~~l~~~~~~~---~~~G~l~~~~~~~ 133 (133)
T cd04033 111 YLLRPRSSKS---RVKGHLRLYMAYL 133 (133)
T ss_pred eeeeecCCCC---cceeEEEEEEeeC
Confidence 9998653322 2466777667765
No 44
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.2e-18 Score=122.58 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=86.6
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+++.+..|++|+.+|..|.+||||++.+... ...+|+++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~----~~~kT~~~------------------------------------- 40 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGK----TVYKSKTI------------------------------------- 40 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCE----EEEEeeec-------------------------------------
Confidence 6899999999999999999999999987531 23444444
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
+++.||+|||+|.|.+.. .. ..|.|+|||++.++++++||++.+++..+. .+.....|++|
T Consensus 41 ----~~t~nP~Wne~f~f~v~~--~~-~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~------------~~~~~~~~~~L 101 (121)
T cd04042 41 ----YKNLNPVWDEKFTLPIED--VT-QPLYIKVFDYDRGLTDDFMGSAFVDLSTLE------------LNKPTEVKLKL 101 (121)
T ss_pred ----cCCCCCccceeEEEEecC--CC-CeEEEEEEeCCCCCCCcceEEEEEEHHHcC------------CCCCeEEEEEC
Confidence 445555555555555432 12 479999999999999999999999998653 26678899999
Q ss_pred cCCCCCCccccCCCCcceeeeecC
Q psy6105 169 METVPGQIPLSHSSNLPSSLSCLN 192 (194)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~ 192 (194)
.+... ....|.+.+.+++-|
T Consensus 102 ~~~~~----~~~~G~l~l~~~~~~ 121 (121)
T cd04042 102 EDPNS----DEDLGYISLVVTLTP 121 (121)
T ss_pred CCCCC----ccCceEEEEEEEECC
Confidence 76543 124556666566543
No 45
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=1.2e-18 Score=123.31 Aligned_cols=123 Identities=21% Similarity=0.315 Sum_probs=87.3
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
..+.|++.++.|++|+++ +.+||||+|.+... ...+|++
T Consensus 2 ~~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~----~~~kT~v---------------------------------- 40 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVK---HVPHPYCVISLNEV----KVARTKV---------------------------------- 40 (126)
T ss_pred ceeEEEEEEEEeeCCCCC---CCCCeeEEEEECCE----eEEEeec----------------------------------
Confidence 467899999999999875 47899999999532 1233333
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
+ ++.||.|||+|.|.+....+ ..+.|.|||++.++++++||++.+++..+. ++...+.
T Consensus 41 -------~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~------------~~~~~~~ 98 (126)
T cd08400 41 -------R-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQ------------NGQETDE 98 (126)
T ss_pred -------C-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHcc------------CCCcccE
Confidence 2 24556666666665433332 267889999999999999999999998653 2566789
Q ss_pred EEEccCCCCCCccccCCCCcceeeeecC
Q psy6105 165 WYPLMETVPGQIPLSHSSNLPSSLSCLN 192 (194)
Q Consensus 165 W~~L~~~~~~~~~~~~~~~~~~~~~~~~ 192 (194)
||+|.+... .+....|++.++++|.+
T Consensus 99 W~~L~~~~~--~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 99 WYPLSSASP--LKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEcccCCC--CCCCcCcEEEEEEEEEc
Confidence 999988643 22335577888888764
No 46
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.80 E-value=1.1e-18 Score=119.82 Aligned_cols=102 Identities=22% Similarity=0.308 Sum_probs=76.2
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
|.+.++.|++|+..+..|.+||||+|+++.. .. +
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~-----~~-----------------------------------------k 35 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKT-----TQ-----------------------------------------K 35 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCE-----EE-----------------------------------------e
Confidence 5789999999999999999999999998642 33 4
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
|++++++.||+|||+|.|.+.... ...|.|+|+|++. +++||++.+++. +++..++....+||+|
T Consensus 36 T~v~~~t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~----------~l~~~~~~~~~~w~~L 100 (105)
T cd04050 36 SKVKERTNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT---GKSLGSLTLPLS----------ELLKEPDLTLDQPFPL 100 (105)
T ss_pred CccccCCCCCcccceEEEEeCCCC--CCEEEEEEEECCC---CCccEEEEEEHH----------HhhccccceeeeeEec
Confidence 444445555566666666654322 2378999999875 789999999997 4555566678999999
Q ss_pred cCC
Q psy6105 169 MET 171 (194)
Q Consensus 169 ~~~ 171 (194)
.+.
T Consensus 101 ~~~ 103 (105)
T cd04050 101 DNS 103 (105)
T ss_pred CCC
Confidence 764
No 47
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.79 E-value=2.6e-18 Score=120.81 Aligned_cols=108 Identities=23% Similarity=0.358 Sum_probs=78.1
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
+|.++++.|++|+++|..|.+||||+|.+... ...+|+++++|+||.|||.|
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~----~~~kT~v~~~t~nP~Wne~f------------------------ 52 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNE----VIIRTATVWKTLNPFWGEEY------------------------ 52 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCE----eeeeeeeEcCCCCCcccceE------------------------
Confidence 47899999999999999999999999998532 13455555555555555544
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
.|.+... ...|.|.|||++.++++++||++.+++..+ . ..+....+|++
T Consensus 53 -----------------~~~~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~----------~-~~~~~~~~W~~ 101 (121)
T cd04054 53 -----------------TVHLPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVI----------S-AHPRGIDGWMN 101 (121)
T ss_pred -----------------EEeeCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHh----------c-cCCCCCCcEEE
Confidence 4444321 137889999999999999999999997532 2 23445789999
Q ss_pred ccCCCCC
Q psy6105 168 LMETVPG 174 (194)
Q Consensus 168 L~~~~~~ 174 (194)
|++...+
T Consensus 102 L~~~~~~ 108 (121)
T cd04054 102 LTEVDPD 108 (121)
T ss_pred CeeeCCC
Confidence 9876533
No 48
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=2.3e-18 Score=122.04 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=78.8
Q ss_pred eEEEeeccCCCCCCCCC--CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105 8 SFRADNYCRPTIGNRSI--PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR 85 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~--~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~ 85 (194)
.+++.+++|++|+++|. .|.+||||++.++.. +.+|+++++|+||.|||.
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~-----~~kT~~~~~t~~P~Wne~----------------------- 53 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQ-----RFKTQTIPNTLNPKWNYW----------------------- 53 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCE-----EEecceecCCcCCccCCc-----------------------
Confidence 47899999999999998 899999999987532 345555555555555544
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhC-CCCceEe
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDN-PRQPVTQ 164 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~-p~~~~~~ 164 (194)
|.|.+.. .....|.|+|||++.++++++||++.+++..+ +.. ......+
T Consensus 54 ------------------f~~~~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~----------~~~~~~~~~~~ 103 (128)
T cd04024 54 ------------------CEFPIFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEV----------FADGKTGQSDK 103 (128)
T ss_pred ------------------EEEEecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHh----------hcccccCccce
Confidence 4444432 12248999999999988999999999999744 221 1234679
Q ss_pred EEEccCCCCC
Q psy6105 165 WYPLMETVPG 174 (194)
Q Consensus 165 W~~L~~~~~~ 174 (194)
||+|.+...+
T Consensus 104 w~~L~~~~~~ 113 (128)
T cd04024 104 WITLKSTRPG 113 (128)
T ss_pred eEEccCcccC
Confidence 9999987554
No 49
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.79 E-value=1.7e-18 Score=121.41 Aligned_cols=108 Identities=25% Similarity=0.320 Sum_probs=83.4
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+++.+++|++|+..|..|.+||||++.+.+.. .. +++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~-----------------------------------------~~k 38 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DE-----------------------------------------KKR 38 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--Cc-----------------------------------------cCc
Confidence 67899999999999999999999999986430 11 345
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
|++++++.||+|||+|.|.+.... ...|.|+|||++.+ ++++||++.++++.+. ++.....|++|
T Consensus 39 T~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~------------~g~~~~~~~~L 103 (119)
T cd04036 39 TKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV-MDDHLGTVLFDVSKLK------------LGEKVRVTFSL 103 (119)
T ss_pred cceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC-CCcccEEEEEEHHHCC------------CCCcEEEEEEC
Confidence 666666677777777777665432 24799999999988 8999999999998653 36778999999
Q ss_pred cCCCCC
Q psy6105 169 METVPG 174 (194)
Q Consensus 169 ~~~~~~ 174 (194)
.+...|
T Consensus 104 ~~~~~g 109 (119)
T cd04036 104 NPQGKE 109 (119)
T ss_pred CCCCCc
Confidence 876433
No 50
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=2.7e-18 Score=122.99 Aligned_cols=133 Identities=21% Similarity=0.378 Sum_probs=92.4
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
-+|+.++.|++|+++|..|.+||||+|.+... +.+|+++++|+||.|||.|.|.+. .+. +
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~v~~~t~nP~Wne~~~f~~~-------~~~-~------- 61 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQ-----SQETEVIKETLSPTWDQTLIFDEV-------ELY-G------- 61 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCe-----eeEeeeEcCCCCCccCcEEEEeee-------ecc-C-------
Confidence 47999999999999999999999999998643 567888888888888887776421 000 0
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
+|.. +. . ....|.|+|||++..+++++||++.+.......+ . .++.+..+||+
T Consensus 62 ---------~~~~-------~~-~--~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~--~------~~~~~~~~W~~ 114 (135)
T cd04017 62 ---------SPEE-------IA-Q--NPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDL--E------EDFPPKLQWFP 114 (135)
T ss_pred ---------ChHH-------hh-c--CCCEEEEEEEeCcCCCCCccceEEEeeeeeeccc--C------CCCCCCceEEE
Confidence 0000 00 0 1137899999999999999999999743221110 0 14677889999
Q ss_pred ccCCCCCCccccCCCCcceeeeecCC
Q psy6105 168 LMETVPGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 168 L~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (194)
|.... ...|++.++++.++.
T Consensus 115 L~~~~------~~~Geil~~~~~~~~ 134 (135)
T cd04017 115 IYKGG------QSAGELLAAFELIEV 134 (135)
T ss_pred eecCC------CchhheeEEeEEEEe
Confidence 96432 256788888877664
No 51
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.79 E-value=2.3e-18 Score=121.26 Aligned_cols=110 Identities=21% Similarity=0.334 Sum_probs=84.2
Q ss_pred ceeEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 6 SRSFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
...+.+.++.|++|+++| ..|.+||||++++.++. ..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~---------------------------------------- 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RR---------------------------------------- 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CC----------------------------------------
Confidence 456899999999999999 68899999999998651 11
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
.++|++++++.||+|||+|.|.++...+....|.|.|||++..+++++||++.++|+.+.. ......
T Consensus 51 -~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~ 117 (123)
T cd08390 51 -SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL------------VKGGVV 117 (123)
T ss_pred -ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceec------------CCCceE
Confidence 2345555556666666666666655444445899999999998889999999999997642 455679
Q ss_pred EEEccC
Q psy6105 165 WYPLME 170 (194)
Q Consensus 165 W~~L~~ 170 (194)
|++|.+
T Consensus 118 w~~L~~ 123 (123)
T cd08390 118 WRDLEP 123 (123)
T ss_pred EEeCCC
Confidence 999964
No 52
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=2e-18 Score=120.44 Aligned_cols=103 Identities=24% Similarity=0.209 Sum_probs=78.1
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+++.++.|++|+++|..|.+||||++++... +.+|+++++|+||.|||.|.
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~Wne~f~------------------------ 52 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNE-----KYKSKVCSKTLNPQWLEQFD------------------------ 52 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCE-----eEecccccCCCCCceeEEEE------------------------
Confidence 6889999999999999999999999998532 34555555555555555554
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
|.+... ....|.|+|||++.++++++||++.++++.+. .+.....|++|
T Consensus 53 -----------------f~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~------------~~~~~~~w~~L 101 (116)
T cd08376 53 -----------------LHLFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALP------------REQTHSLELEL 101 (116)
T ss_pred -----------------EEecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCC------------CCCceEEEEEc
Confidence 444322 12478999999999989999999999998653 25667899999
Q ss_pred cCC
Q psy6105 169 MET 171 (194)
Q Consensus 169 ~~~ 171 (194)
.+.
T Consensus 102 ~~~ 104 (116)
T cd08376 102 EDG 104 (116)
T ss_pred cCC
Confidence 764
No 53
>KOG1030|consensus
Probab=99.78 E-value=1e-18 Score=125.99 Aligned_cols=92 Identities=30% Similarity=0.370 Sum_probs=72.9
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.||+.+..|.+|..+|..+++||||.+.++.+ +.+|+
T Consensus 7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q-----~lkT~-------------------------------------- 43 (168)
T KOG1030|consen 7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ-----KLKTR-------------------------------------- 43 (168)
T ss_pred EEEEEEEeecCeeeeccccCCCCeEEEEECCe-----eeeee--------------------------------------
Confidence 58999999999999999999999999999876 44444
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
++++++||+|||.|+|.+.... ..|.++|||+|.++.||+||.+.|++..+-.+.
T Consensus 44 ---~v~~n~NPeWNe~ltf~v~d~~---~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 44 ---VVYKNLNPEWNEELTFTVKDPN---TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ---eecCCCCCcccceEEEEecCCC---ceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence 4445555555555566664432 489999999999999999999999998765433
No 54
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.78 E-value=4e-18 Score=122.37 Aligned_cols=132 Identities=20% Similarity=0.311 Sum_probs=99.1
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
|+++++.|++|+.+ ..|.+||||+|++... ....+.+|++++++.||.|||.|.|.+... ..+. .
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~--------~~~~---~-- 65 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIG--------FSYE---K-- 65 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccc--------cccc---c--
Confidence 57899999999999 7899999999999842 234578999999999999999999885511 0000 0
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
+ .+.+...++....|.|+|||++.++++++||++.+++..+. .......||+|
T Consensus 66 ----~-----------~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L 118 (137)
T cd08675 66 ----K-----------SFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFL 118 (137)
T ss_pred ----c-----------ccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEec
Confidence 0 02233455566789999999998889999999999998653 24567899999
Q ss_pred cCCCCCCccccCCC
Q psy6105 169 METVPGQIPLSHSS 182 (194)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (194)
.+..+.....+-+|
T Consensus 119 ~~~~~~~~~~~~~~ 132 (137)
T cd08675 119 QPREAPGTRSSNDG 132 (137)
T ss_pred CCcCCCCCCccccC
Confidence 99876655444443
No 55
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=2e-18 Score=121.41 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=77.8
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
|+++++.|++|+++ .+||||++.++.. +. +
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~-----~~-----------------------------------------k 31 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNY-----KG-----------------------------------------S 31 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCc-----cc-----------------------------------------c
Confidence 57888889988877 6788888887532 33 4
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
|++++++.||+|||+|.|.+.. +....|.++|||++.. ++++||++.++++.+..+.. ..+....+||+|
T Consensus 32 T~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~-------~~~~~~~~W~~L 101 (121)
T cd08378 32 TKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVP-------PDSPLAPQWYRL 101 (121)
T ss_pred ccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCC-------CCCCCCcceEEc
Confidence 4445555555555555555432 1335899999999877 78999999999987632110 013346799999
Q ss_pred cCCCCCCccccCCCCcceee
Q psy6105 169 METVPGQIPLSHSSNLPSSL 188 (194)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (194)
.+... ...+|...|.+++
T Consensus 102 ~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 102 EDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred cCCCC--CccceEEEEEEEe
Confidence 98764 2344554544443
No 56
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=7.6e-18 Score=123.69 Aligned_cols=100 Identities=28% Similarity=0.440 Sum_probs=78.2
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
+||||+|.+.+. ...+|++++++.||+|||+|.|.+.... ..|.++|+|++.++ +++||++.++++.+.
T Consensus 58 sDPYv~V~l~~~----~~~rT~v~~~~~nP~WnE~F~~~~~~~~---~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~--- 126 (158)
T cd04015 58 SDPYATVDLAGA----RVARTRVIENSENPVWNESFHIYCAHYA---SHVEFTVKDNDVVG-AQLIGRAYIPVEDLL--- 126 (158)
T ss_pred cCeEEEEEECCe----EeeEEEEeCCCCCCccceEEEEEccCCC---CEEEEEEEeCCCcC-CcEEEEEEEEhHHcc---
Confidence 688998888432 2468888888999999999998875322 47999999998875 589999999998653
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeee
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSC 190 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~ 190 (194)
.+....+|++|.+. +.++..+.+.+.+++.|
T Consensus 127 ---------~g~~~~~w~~L~~~--~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 127 ---------SGEPVEGWLPILDS--NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ---------CCCCcceEEECcCC--CCCCCCCCCEEEEEEEE
Confidence 25677899999875 35577777888888776
No 57
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=2.7e-18 Score=120.10 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=75.6
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+++++.+|++|+.+|..|.+||||+|.++.. +.+|+++.
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~----------------------------------- 41 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGV-----TKKTKTDF----------------------------------- 41 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCC-----cccccccc-----------------------------------
Confidence 58999999999999999999999999998653 33343332
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
+++.||+|||.|.|.+... ....|.|+|||++..+ +++||++.+++..+ +. +....+||+
T Consensus 42 -----~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~----------~~--~~~~~~w~~ 101 (118)
T cd08681 42 -----RGGQHPEWDEELRFEITED--KKPILKVAVFDDDKRK-PDLIGDTEVDLSPA----------LK--EGEFDDWYE 101 (118)
T ss_pred -----CCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCCC-CcceEEEEEecHHH----------hh--cCCCCCcEE
Confidence 2245566666666655433 1248999999998876 89999999999853 22 334689999
Q ss_pred ccC
Q psy6105 168 LME 170 (194)
Q Consensus 168 L~~ 170 (194)
|..
T Consensus 102 L~~ 104 (118)
T cd08681 102 LTL 104 (118)
T ss_pred ecc
Confidence 975
No 58
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.77 E-value=4.8e-18 Score=119.80 Aligned_cols=107 Identities=21% Similarity=0.360 Sum_probs=79.2
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+++++++|++|+.+|..|.+||||++++.+. . .+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~----~-----------------------------------------~~ 35 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGG----Q-----------------------------------------TH 35 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCc----c-----------------------------------------ce
Confidence 37999999999999999999999999998521 1 34
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCC--CceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS--DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~--~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
+|++++++.||.|||+|.|.+.. ...|.|+|||++.+++ +++||++.+++.++ +. .......|
T Consensus 36 kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l----------~~-~~~~~~~~ 100 (123)
T cd08382 36 STDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAV----------LP-LKDTGYQR 100 (123)
T ss_pred EccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHc----------cc-cCCCccce
Confidence 55555556666666666666643 2489999999988865 58999999999854 22 23344679
Q ss_pred EEccCCCCC
Q psy6105 166 YPLMETVPG 174 (194)
Q Consensus 166 ~~L~~~~~~ 174 (194)
++|++....
T Consensus 101 ~~l~~~~~~ 109 (123)
T cd08382 101 LDLRKLKKS 109 (123)
T ss_pred eEeecCCCC
Confidence 999777654
No 59
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=4.7e-18 Score=123.49 Aligned_cols=130 Identities=26% Similarity=0.314 Sum_probs=86.0
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
+|.++++.|++|+++|.++... +.+ . ..+ .+.-.+||||+|.+.+. +.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~-~~~-----~-----~~~----------------~~~~~~DPYV~V~~~g~-----~~ 48 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMAN-VKK-----A-----FLG----------------EKKELVDPYVEVSFAGQ-----KV 48 (151)
T ss_pred CeEEEEEEeCCCCccChhhhcc-cee-----c-----ccc----------------CCCCCcCcEEEEEECCE-----ee
Confidence 4778999999999998654211 000 0 000 00001467777766432 45
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC-cchhhHHHHhhCCCCceEeEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~W~~~l~~p~~~~~~W~ 166 (194)
+|++++++.||+|||+|.|.+..+... ..|.|+|||+|..+++++||.+.+++..+. .+.+.|. .....+|+
T Consensus 49 kT~v~~~t~nPvWNE~f~f~v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~l------p~~~p~W~ 121 (151)
T cd04018 49 KTSVKKNSYNPEWNEQIVFPEMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFL------PTFGPSFV 121 (151)
T ss_pred ecceEcCCCCCCcceEEEEEeeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccC------CccCceEE
Confidence 777777888888888888876444333 489999999999999999999999998543 2223332 12346999
Q ss_pred EccCCCCCCc
Q psy6105 167 PLMETVPGQI 176 (194)
Q Consensus 167 ~L~~~~~~~~ 176 (194)
.|++.+.+..
T Consensus 122 ~lyg~~~~~~ 131 (151)
T cd04018 122 NLYGSPREYS 131 (151)
T ss_pred EeecCccccc
Confidence 9999876654
No 60
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=3.9e-18 Score=118.10 Aligned_cols=106 Identities=28% Similarity=0.349 Sum_probs=76.3
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.++++++.|++|+ +|.+||||+++++.. +++|+++++++||.|||.|.|.+.
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~-----~~kT~~~~~t~nP~wne~f~f~~~------------------- 56 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQ-----KKYTSVKKGTNCPFYNEYFFFNFH------------------- 56 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCE-----eeeeeEEeccCCCccccEEEEecC-------------------
Confidence 6899999999998 678999999998743 445666666666666666554422
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
.+..++.+..|.|+|||++.++++++||++.++++.+..+.. .....+|++
T Consensus 57 --------------------~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~---------~~~~~~w~~ 107 (111)
T cd04011 57 --------------------ESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPD---------HAFLRKWLL 107 (111)
T ss_pred --------------------CCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCC---------CcceEEEEE
Confidence 011122345899999999998889999999999997643222 245689999
Q ss_pred ccC
Q psy6105 168 LME 170 (194)
Q Consensus 168 L~~ 170 (194)
|.+
T Consensus 108 L~~ 110 (111)
T cd04011 108 LTD 110 (111)
T ss_pred eeC
Confidence 965
No 61
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=1.3e-17 Score=119.56 Aligned_cols=117 Identities=24% Similarity=0.318 Sum_probs=83.5
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
+--.+++.++.|++|++.|..|.+||||++.++.. ..+|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~-----~~kT------------------------------------ 51 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ-----EHKT------------------------------------ 51 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCE-----eeec------------------------------------
Confidence 44578999999999999999999999999998532 3444
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~ 164 (194)
++++++.||.|||+|.|.+... ....|.|+|||++.++++++||++.+++.++..+.. ..+.+..+
T Consensus 52 -----~vi~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~~~ 117 (136)
T cd08375 52 -----KVVSDTLNPKWNSSMQFFVKDL--EQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETK-------ESKGPITK 117 (136)
T ss_pred -----cccCCCCCCccCceEEEEecCc--cCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccc-------cCCCcEEE
Confidence 4444555555555555555321 224899999999999999999999999986543211 22456788
Q ss_pred EEEccCCCCCCc
Q psy6105 165 WYPLMETVPGQI 176 (194)
Q Consensus 165 W~~L~~~~~~~~ 176 (194)
|..|.....|+.
T Consensus 118 ~~~~~~~~~g~i 129 (136)
T cd08375 118 RLLLHEVPTGEV 129 (136)
T ss_pred EeccccccceeE
Confidence 998865554543
No 62
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=3.3e-18 Score=118.54 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=68.7
Q ss_pred eEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 8 SFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
.+++.++.|++|+.+|.. |.+||||+|++.+.+ ....+|+++++
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~--------------------------------- 46 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRK--------------------------------- 46 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECC---------------------------------
Confidence 478999999999999998 999999999997541 12344444444
Q ss_pred eeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSF 143 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 143 (194)
+.||+|||+|.|.+...++ ....|.++|||++.++++++||++.+++..
T Consensus 47 --------t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 47 --------DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred --------CCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 4555555555554433322 235899999999999999999999999974
No 63
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.76 E-value=7.3e-18 Score=120.07 Aligned_cols=115 Identities=30% Similarity=0.534 Sum_probs=87.3
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..+++.+++|++|+..|..|.+||||+|.+.+.+.... .
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~-----------------------------------------~ 51 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNET-----------------------------------------K 51 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCc-----------------------------------------e
Confidence 56899999999999999999999999999976422122 3
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
++|++++++.+|.|||+|.|.+...+. ...|.|+|||++..+++++||++.++++.+ + ......||
T Consensus 52 ~rT~v~~~~~~P~wne~f~~~~~~~~~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l----------~---~~~~~~w~ 117 (131)
T cd04026 52 QKTKTIKKTLNPVWNETFTFDLKPADK-DRRLSIEVWDWDRTTRNDFMGSLSFGVSEL----------I---KMPVDGWY 117 (131)
T ss_pred ecceeecCCCCCCccceEEEeCCchhc-CCEEEEEEEECCCCCCcceeEEEEEeHHHh----------C---cCccCceE
Confidence 455555566666666666666544332 348999999999888999999999999754 2 22668999
Q ss_pred EccCCCCCCc
Q psy6105 167 PLMETVPGQI 176 (194)
Q Consensus 167 ~L~~~~~~~~ 176 (194)
+|.+..+|..
T Consensus 118 ~L~~~~~~~~ 127 (131)
T cd04026 118 KLLNQEEGEY 127 (131)
T ss_pred ECcCcccccc
Confidence 9999887764
No 64
>KOG1013|consensus
Probab=99.75 E-value=1.1e-19 Score=142.69 Aligned_cols=165 Identities=26% Similarity=0.377 Sum_probs=147.9
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC------------------
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP------------------ 68 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~------------------ 68 (194)
..+-.....|.+|.++|++|..|||+++.++|..++..+.+|++..+++||.|+|+-.+..-
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 34456667789999999999999999999999877777899999999999999998877533
Q ss_pred --------------------------------------------------------------------------------
Q psy6105 69 -------------------------------------------------------------------------------- 68 (194)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (194)
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng 252 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNG 252 (362)
T ss_pred ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCC
Confidence
Q ss_pred -CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105 69 -ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 69 -~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
+||||++.+.+.-.+..+++|.+.+++.+|.|++.|.|.+.+..|....+.|+|||++..+..+++|-+..++...+.-
T Consensus 253 ~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr~~v 332 (362)
T KOG1013|consen 253 YSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRRGEV 332 (362)
T ss_pred CCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccccchh
Confidence 8999999998776777889999999999999999999999999998889999999999988999999999888888778
Q ss_pred hhhHHHHhhCCCCceEeEEEccCC
Q psy6105 148 RDHWLEMLDNPRQPVTQWYPLMET 171 (194)
Q Consensus 148 ~~~W~~~l~~p~~~~~~W~~L~~~ 171 (194)
..||.+.+..+......||.|...
T Consensus 333 ~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 333 HKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred hcCccccccccccccccccccccc
Confidence 899999999999999999999763
No 65
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=1.1e-17 Score=118.51 Aligned_cols=102 Identities=27% Similarity=0.430 Sum_probs=74.2
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.|++.+++|++|+.+|..|.+||||+|+++.. ..+|+++++|+||.|||.|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~~v~~t~~P~Wne~f~----------------------- 53 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKT-----KKRTKTIPQNLNPVWNEKFH----------------------- 53 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCE-----eeecceecCCCCCccceEEE-----------------------
Confidence 58999999999999999999999999998532 34555555555555555554
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-----------CCCceeEEEEeCCCCCCcchhhHHHHhh
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-----------GSDELMGCTAIGSSFIGIGRDHWLEMLD 156 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-----------~~~~~iG~~~i~l~~~~~~~~~W~~~l~ 156 (194)
|.+... ...|.|+|||+|.. +.+++||++.+++..+.
T Consensus 54 ------------------f~~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~----------- 101 (127)
T cd04027 54 ------------------FECHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS----------- 101 (127)
T ss_pred ------------------EEecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc-----------
Confidence 433211 13688889998742 47899999999997542
Q ss_pred CCCCceEeEEEccCCC
Q psy6105 157 NPRQPVTQWYPLMETV 172 (194)
Q Consensus 157 ~p~~~~~~W~~L~~~~ 172 (194)
.....||.|.+..
T Consensus 102 ---~~~~~w~~L~~~~ 114 (127)
T cd04027 102 ---GEMDVWYNLEKRT 114 (127)
T ss_pred ---CCCCeEEECccCC
Confidence 2346899998765
No 66
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.75 E-value=1.2e-17 Score=121.50 Aligned_cols=119 Identities=23% Similarity=0.392 Sum_probs=87.5
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE--EEee-------EEecCCCCceeeeeEEEecCCCceeEE
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR--KKRT-------SVKKNSLNPFYNEALLFDVPANPYVKV 75 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~--~~~T-------~~~~~t~nP~w~e~f~f~~~~dpyv~v 75 (194)
-...+++.++.|++|.++|..|.+||||+|.+.+...... +.++ ...++.+++
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 87 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPA------------------ 87 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccc------------------
Confidence 3567899999999999999999999999999976421110 0111 111111111
Q ss_pred EEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHh
Q psy6105 76 YLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEML 155 (194)
Q Consensus 76 ~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l 155 (194)
...++|.+++++.||.|||+|.|.+... ....|.|+|||++ +++||++.++++.+.
T Consensus 88 --------~~~~kT~v~~~tlnP~WnE~F~f~v~~~--~~~~L~i~V~D~d----d~~IG~v~i~l~~l~---------- 143 (153)
T cd08676 88 --------KSIKVTEVKPQTLNPVWNETFRFEVEDV--SNDQLHLDIWDHD----DDFLGCVNIPLKDLP---------- 143 (153)
T ss_pred --------cccEecceecCCCCCccccEEEEEeccC--CCCEEEEEEEecC----CCeEEEEEEEHHHhC----------
Confidence 1367899999999999999999998532 3458999999987 889999999997542
Q ss_pred hCCCCceEeEEEc
Q psy6105 156 DNPRQPVTQWYPL 168 (194)
Q Consensus 156 ~~p~~~~~~W~~L 168 (194)
+..+.+||+|
T Consensus 144 ---~~~~d~W~~L 153 (153)
T cd08676 144 ---SCGLDSWFKL 153 (153)
T ss_pred ---CCCCCCeEeC
Confidence 2346899987
No 67
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=2.4e-17 Score=116.80 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=81.1
Q ss_pred eccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeeceee
Q psy6105 13 NYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVK 92 (194)
Q Consensus 13 ~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~~~ 92 (194)
+.+|++|+. ..|.+||||+|++... +. +|+++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~-----~~-----------------------------------------kT~v~ 33 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGV-----KK-----------------------------------------KTRVL 33 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCE-----ee-----------------------------------------eccee
Confidence 467888877 6778888888887532 33 44444
Q ss_pred cCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEccCCC
Q psy6105 93 KNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV 172 (194)
Q Consensus 93 ~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~ 172 (194)
+++.||+|||+|.|.+.........|.|+|||++..+++++||++.++++.+.. +.....|++|.+..
T Consensus 34 ~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~------------~~~~~~~~~L~~~~ 101 (127)
T cd08373 34 ENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVS------------EGLLEVTEPLLDSN 101 (127)
T ss_pred CCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHccc------------CCceEEEEeCcCCC
Confidence 445555555555555533222345899999999999899999999999986532 45678999997644
Q ss_pred CCCccccCCCCcceeeeecCC
Q psy6105 173 PGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~ 193 (194)
. .+ ..+.+.+.++|.|.
T Consensus 102 ~--~~--~~~~l~l~~~~~~~ 118 (127)
T cd08373 102 G--RP--TGATISLEVSYQPP 118 (127)
T ss_pred C--Cc--ccEEEEEEEEEeCC
Confidence 2 22 23578888888875
No 68
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=2.6e-17 Score=116.48 Aligned_cols=121 Identities=18% Similarity=0.289 Sum_probs=82.2
Q ss_pred EEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeec
Q psy6105 10 RADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRT 89 (194)
Q Consensus 10 r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT 89 (194)
-+++++|++|+. ..|.+||||++.+... ..+.+|
T Consensus 2 ~v~v~~A~~L~~--~~g~~dpyv~v~~~~~---~~~~kT----------------------------------------- 35 (126)
T cd08678 2 LVKNIKANGLSE--AAGSSNPYCVLEMDEP---PQKYQS----------------------------------------- 35 (126)
T ss_pred EEEEEEecCCCC--CCCCcCCEEEEEECCC---CcEEEe-----------------------------------------
Confidence 478899999987 7789999999998521 113344
Q ss_pred eeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEcc
Q psy6105 90 SVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169 (194)
Q Consensus 90 ~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~ 169 (194)
++++++.||+|||.|.|.+... ...|.|+|||++..+++++||++.++++.+. . +.....||+|+
T Consensus 36 ~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~----------~--~~~~~~~~~L~ 100 (126)
T cd08678 36 STQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELR----------K--NPSGRQIFPLQ 100 (126)
T ss_pred EEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhc----------c--CCceeEEEEec
Confidence 4444455555555555555322 2479999999999989999999999998542 1 33457899998
Q ss_pred CCCCCCccccCCCCcceeeeecCC
Q psy6105 170 ETVPGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~ 193 (194)
+.... .....|.+.+.+.+.++
T Consensus 101 ~~~~~--~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 101 GRPYE--GDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCCCC--CCCcceEEEEEEEEecc
Confidence 76431 22345666666666543
No 69
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.75 E-value=2.4e-17 Score=117.76 Aligned_cols=101 Identities=29% Similarity=0.453 Sum_probs=79.9
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
....+++.+++|++|+.++..|.+||||+|++.+.... + ..
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~--------------~-------------------------~~ 54 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF--------------P-------------------------DV 54 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcC--------------c-------------------------cc
Confidence 34679999999999999999999999999999865100 0 01
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCC--CCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASN--VNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI 144 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~--l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 144 (194)
.+++|+++++++||+|||+|.|.+...+ .....|.|+|||++.++++++||++.++++++
T Consensus 55 ~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l 116 (133)
T cd04009 55 PTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116 (133)
T ss_pred cccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHC
Confidence 2567777788888888888888775432 23468999999999999999999999999865
No 70
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=2.1e-17 Score=113.85 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=64.1
Q ss_pred EEEeeccCCCCCCCCCC----CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 9 FRADNYCRPTIGNRSIP----SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~----g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
+++++.+|++|++.|.. +.+||||+|+++.. +.+|+++++
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~-----~~kT~v~~~------------------------------- 46 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRR-----VFRTSWRRH------------------------------- 46 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECCE-----eEeeeeecC-------------------------------
Confidence 78999999999988742 35899999887422 334444444
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI 144 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 144 (194)
++||+|||.|.|.+..... ...|.|.|||++.++++++||++.++|+.+
T Consensus 47 ----------t~nPvWne~f~f~v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l 95 (108)
T cd04039 47 ----------TLNPVFNERLAFEVYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQEL 95 (108)
T ss_pred ----------CCCCcccceEEEEEeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHH
Confidence 4555555555555543332 248999999999999999999999999854
No 71
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=2.9e-17 Score=114.94 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=75.1
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.++++++.|++|+.+|..+.+||||+|++... ..+|++++++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----~~~T~~~~~t--------------------------------- 43 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNA-----RLQTHTIYKT--------------------------------- 43 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCE-----eeecceecCC---------------------------------
Confidence 47899999999999999999999999988532 2344444444
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
.||.|+|+|.|.+.. + ...|.|+|||++..+++++||++.+++..+. ....+||+
T Consensus 44 --------~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~--------------~~~~~~~~ 98 (119)
T cd08377 44 --------LNPEWNKIFTFPIKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIK--------------NGERKWYA 98 (119)
T ss_pred --------cCCccCcEEEEEecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCC--------------CCCceEEE
Confidence 555555555554432 1 2478999999998889999999999997542 22358999
Q ss_pred ccCCCC
Q psy6105 168 LMETVP 173 (194)
Q Consensus 168 L~~~~~ 173 (194)
|.+...
T Consensus 99 l~~~~~ 104 (119)
T cd08377 99 LKDKKL 104 (119)
T ss_pred CcccCC
Confidence 987543
No 72
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=4.4e-17 Score=115.05 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=78.5
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+|+.+++|++|+++|..|.+||||+++++.. ....+|+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~--------------------------------------- 39 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDN--------------------------------------- 39 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceee---------------------------------------
Confidence 6899999999999999999999999999643 1123333
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP 161 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~ 161 (194)
+++++.||+|||+|.|.+.... ...|.|+|||++.++++++||++.+++....- ..||..++..|...
T Consensus 40 --~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~ 107 (124)
T cd04037 40 --YIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDLLGSDDLIGETVIDLEDRFF-SKHRATCGLPPTYE 107 (124)
T ss_pred --EEECCCCCccceEEEEEecCCC--CCEEEEEEEECCCCCCCceeEEEEEeeccccc-chHHHhccCCCccc
Confidence 3444555555555555543221 24899999999999999999999999986543 67888887776554
No 73
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.74 E-value=2.8e-17 Score=115.22 Aligned_cols=107 Identities=23% Similarity=0.346 Sum_probs=76.2
Q ss_pred eEEEeeccCCCCCCCCC------CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCC
Q psy6105 8 SFRADNYCRPTIGNRSI------PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG 81 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~------~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~ 81 (194)
.+++.+++|++|+.+|. .|.+||||+|+++.. ..+|+++++++||.|||.|.
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~-----~~kT~~~~~t~~P~W~e~f~----------------- 59 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ-----TFKSKVIKENLNPKWNEVYE----------------- 59 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE-----eEEccccCCCCCCcccceEE-----------------
Confidence 37899999999999885 368999999988642 45555555555555555544
Q ss_pred eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105 82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP 161 (194)
Q Consensus 82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~ 161 (194)
|.+... ....|.|+|||++.. ++++||++.+++..+. . +..
T Consensus 60 ------------------------~~v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~----------~--~~~ 100 (121)
T cd08391 60 ------------------------AVVDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVE----------K--KGF 100 (121)
T ss_pred ------------------------EEeCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhc----------c--cCc
Confidence 444321 124899999999888 8899999999997542 1 344
Q ss_pred eEeEEEccCCCCCC
Q psy6105 162 VTQWYPLMETVPGQ 175 (194)
Q Consensus 162 ~~~W~~L~~~~~~~ 175 (194)
..+||+|.+...|.
T Consensus 101 ~~~w~~L~~~~~G~ 114 (121)
T cd08391 101 IDEWLPLEDVKSGR 114 (121)
T ss_pred cceEEECcCCCCce
Confidence 68999998764443
No 74
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=7.7e-17 Score=114.11 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=75.3
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..+++.+++|++|.+.|..|.+||||++.+... ..+|+++++|+||.|||.|.|
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~-----~~kT~v~~~t~nP~Wne~f~f--------------------- 56 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE-----SVRSPVQKDTLSPEFDTQAIF--------------------- 56 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCE-----EEEeCccCCCCCCcccceEEE---------------------
Confidence 358999999999999999999999999987643 455666666666666665553
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
.+... ...|.|+|||++.+ ++++||++.+++... .....+|+
T Consensus 57 --------------------~~~~~---~~~l~i~V~d~~~~-~d~~lG~~~~~l~~~--------------~~~~~~~~ 98 (126)
T cd04046 57 --------------------YRKKP---RSPIKIQVWNSNLL-CDEFLGQATLSADPN--------------DSQTLRTL 98 (126)
T ss_pred --------------------EecCC---CCEEEEEEEECCCC-CCCceEEEEEecccC--------------CCcCceEE
Confidence 33221 24899999999887 489999999999754 23345889
Q ss_pred EccCC
Q psy6105 167 PLMET 171 (194)
Q Consensus 167 ~L~~~ 171 (194)
+|+..
T Consensus 99 ~l~~~ 103 (126)
T cd04046 99 PLRKR 103 (126)
T ss_pred EcccC
Confidence 99743
No 75
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.73 E-value=1.1e-16 Score=116.49 Aligned_cols=132 Identities=19% Similarity=0.243 Sum_probs=86.0
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+.+...-+-+|++.+.++.+||||++++.-......+.+|+++++|+||+|||.|.|.+. . ..
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~-----------~-----~~ 68 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNIN-----------R-----KH 68 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEec-----------c-----cc
Confidence 3444444444488888889999999999742222444666777777777777766665532 0 00
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-CCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
+ .|. ..+....|.|+|||++.+ ++|++||++.++|+.+.. ...+..|+
T Consensus 69 ~----------------~~~---R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~------------~~~~~~~~ 117 (155)
T cd08690 69 R----------------SFQ---RVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLET------------KCEIHESV 117 (155)
T ss_pred c----------------hhh---hhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccc------------cCcceEEE
Confidence 0 010 022345899999999876 579999999999987642 33456799
Q ss_pred EccCCCCCCccccCCCCcceeee
Q psy6105 167 PLMETVPGQIPLSHSSNLPSSLS 189 (194)
Q Consensus 167 ~L~~~~~~~~~~~~~~~~~~~~~ 189 (194)
+|.. +.++.-|..++.+++.
T Consensus 118 ~L~~---~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 118 DLMD---GRKATGGKLEVKVRLR 137 (155)
T ss_pred Ehhh---CCCCcCCEEEEEEEec
Confidence 9863 5556667667666554
No 76
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.72 E-value=1.8e-16 Score=110.56 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=78.0
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
++++++..|++|+.+ |.+||||++++... ...
T Consensus 1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~~----~~~----------------------------------------- 32 (117)
T cd08383 1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQV----EVA----------------------------------------- 32 (117)
T ss_pred CeEEEEEEecCCCcC---CCCCceEEEEECCE----EeE-----------------------------------------
Confidence 478899999999876 78999999988532 123
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
+|+++++ .||.|||+|.|.+...++....|.|.+||.+...++.++|.+.|..... +.....||+
T Consensus 33 kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~--------------~~~~~~w~~ 97 (117)
T cd08383 33 RTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL--------------GQGKDEWFP 97 (117)
T ss_pred ecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC--------------CCcceeEEE
Confidence 3444444 5556666666655544444457888899987777778888877766433 556789999
Q ss_pred ccCCCCCCccccCCCCcceeee
Q psy6105 168 LMETVPGQIPLSHSSNLPSSLS 189 (194)
Q Consensus 168 L~~~~~~~~~~~~~~~~~~~~~ 189 (194)
|.+...+.. ..|++.+.+.
T Consensus 98 L~~~~~~~~---~~G~l~l~~~ 116 (117)
T cd08383 98 LTPVDPDSE---VQGSVRLRAR 116 (117)
T ss_pred CccCCCCCC---cCceEEEEEE
Confidence 988764321 4455555554
No 77
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.72 E-value=3.6e-16 Score=110.54 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=78.0
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.|.+.+++|++|+.++..|.+||||++.+... ... .+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~-----------------------------------------~~ 38 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG--KRR-----------------------------------------IA 38 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC--Cee-----------------------------------------ee
Confidence 36789999999999999999999999986532 112 33
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCC-CCceEeEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNP-RQPVTQWY 166 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p-~~~~~~W~ 166 (194)
+|++++++.||.|||+|.|.+... ....|.|+|||++.++++++||++.++++.. .... +.....|+
T Consensus 39 kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~----------~~~~~~~~~~~w~ 106 (126)
T cd04043 39 KTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPK----------RFGDDGLPREIWL 106 (126)
T ss_pred cccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHH----------HcCCCCCCceEEE
Confidence 555555556666666666665443 1247999999999888999999999999743 1111 34567899
Q ss_pred EccC
Q psy6105 167 PLME 170 (194)
Q Consensus 167 ~L~~ 170 (194)
+|.+
T Consensus 107 ~l~~ 110 (126)
T cd04043 107 DLDT 110 (126)
T ss_pred EcCC
Confidence 9975
No 78
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.1e-16 Score=112.03 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=71.2
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.|-+++..||+|++++ ..||||.|.++.. +.
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~-----k~----------------------------------------- 33 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNV-----KS----------------------------------------- 33 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCE-----Ee-----------------------------------------
Confidence 4778999999997655 4589999998643 33
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
+|++.++ .||.|||+|.|.+.. .. ..|.|+|||++.+ .|++||++.|+|..+.. .......+||+
T Consensus 34 kT~v~~~-~nP~WnE~F~F~~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~----------~~~~~~~~Wy~ 98 (127)
T cd08394 34 TTIAVRG-SQPCWEQDFMFEINR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQ----------SNEEGPGEWLT 98 (127)
T ss_pred EeeECCC-CCCceeeEEEEEEcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHccc----------CCCCCCCccEe
Confidence 4444443 266666666666532 22 3599999999876 89999999999986532 22334479999
Q ss_pred ccCCC
Q psy6105 168 LMETV 172 (194)
Q Consensus 168 L~~~~ 172 (194)
|.+.-
T Consensus 99 L~~~~ 103 (127)
T cd08394 99 LDSEV 103 (127)
T ss_pred cChHH
Confidence 99763
No 79
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.70 E-value=4.2e-16 Score=111.61 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=82.4
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.|-+..++|++|+ +|..|.+||||++++.+.... +... +..+ ..++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~-------~~~~-----------------------~~~~---~~~~ 47 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRH-------IFPA-----------------------LPHH---GQEC 47 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcc-------cccc-----------------------cccc---ccee
Confidence 3668899999998 888899999999999875110 0000 0000 1267
Q ss_pred eceeecCCCCCcc-cceEEEEecCCCCCCceEEEEEEecCCCCC---CceeEEEEeCCCCCCcchhhHHHHhhCC-CCce
Q psy6105 88 RTSVKKNSLNPFY-NEALLFDVPASNVNDVSLIIKVIDYDRIGS---DELMGCTAIGSSFIGIGRDHWLEMLDNP-RQPV 162 (194)
Q Consensus 88 kT~~~~~t~nP~~-~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~---~~~iG~~~i~l~~~~~~~~~W~~~l~~p-~~~~ 162 (194)
+|.++++++||+| ||+|.|.+... ..|.|+|||++..+. +++||++.+++.++- ..+ ....
T Consensus 48 kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~----------~~~~~~~~ 113 (137)
T cd08691 48 RTSIVENTINPVWHREQFVFVGLPT----DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLL----------ERHAIGDQ 113 (137)
T ss_pred eeeeEcCCCCCceEceEEEEEcCCC----CEEEEEEEecCCCCCccCCceEEEEEEEHHHhc----------ccccCCce
Confidence 7888888888888 88888877532 379999999765433 799999999998542 221 2236
Q ss_pred EeEEEccCCC
Q psy6105 163 TQWYPLMETV 172 (194)
Q Consensus 163 ~~W~~L~~~~ 172 (194)
..||+|....
T Consensus 114 ~~~~~l~k~~ 123 (137)
T cd08691 114 ELSYTLGRRT 123 (137)
T ss_pred EEEEECCcCC
Confidence 7899997554
No 80
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.70 E-value=4.3e-16 Score=111.12 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=74.7
Q ss_pred eeEEEeeccCCCCCCCCCC----------CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEE
Q psy6105 7 RSFRADNYCRPTIGNRSIP----------SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVY 76 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~----------g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~ 76 (194)
-.+++.++.|++|.+.|.. |.+||||++.+... ...+|+++
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~----~~~kT~~~------------------------- 54 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDT----HIGKTSTK------------------------- 54 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCE----EEeEEeEc-------------------------
Confidence 4689999999999998863 57888988888532 12344444
Q ss_pred EEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhh
Q psy6105 77 LVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLD 156 (194)
Q Consensus 77 l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~ 156 (194)
+++.||.|||+|.|.+.. ...|.|.|||++.++++++||++.++|+.+. .
T Consensus 55 ----------------~~t~~P~Wne~f~~~v~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~----------~ 104 (132)
T cd04014 55 ----------------PKTNSPVWNEEFTTEVHN----GRNLELTVFHDAAIGPDDFVANCTISFEDLI----------Q 104 (132)
T ss_pred ----------------CCCCCCCcceeEEEEcCC----CCEEEEEEEeCCCCCCCceEEEEEEEhHHhc----------c
Confidence 445555555555555531 2478999999988889999999999998542 2
Q ss_pred CCCCceEeEEEcc
Q psy6105 157 NPRQPVTQWYPLM 169 (194)
Q Consensus 157 ~p~~~~~~W~~L~ 169 (194)
..+.....|++|.
T Consensus 105 ~~~~~~~~w~~L~ 117 (132)
T cd04014 105 RGSGSFDLWVDLE 117 (132)
T ss_pred cCCCcccEEEEcc
Confidence 2245578999996
No 81
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=2.4e-16 Score=113.97 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=76.5
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+++.++.|++|+.+|. +.+||||+++++.. ..+|+++++++||.||
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~-----~~kT~vvk~t~nP~Wn--------------------------- 49 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQ-----KVKTRVIKKNLNPVWN--------------------------- 49 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECCE-----EEEeeeEcCCCCCeec---------------------------
Confidence 47899999999999997 89999999998643 4455555555555555
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchh-hHHHHhhCCCCceEeEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRD-HWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~-~W~~~l~~p~~~~~~W~ 166 (194)
|+|.|.+... ...|.|+|||++.++++++||.+.+++..+..... +|..-+ ..+..+.+|.
T Consensus 50 --------------E~f~f~i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~ 111 (145)
T cd04038 50 --------------EELTLSVPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVL 111 (145)
T ss_pred --------------ccEEEEecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEe
Confidence 4444544322 24789999999999999999999999987644322 222222 2244566787
Q ss_pred Ecc
Q psy6105 167 PLM 169 (194)
Q Consensus 167 ~L~ 169 (194)
+-.
T Consensus 112 ~~~ 114 (145)
T cd04038 112 PSV 114 (145)
T ss_pred cCC
Confidence 753
No 82
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=4.7e-16 Score=109.89 Aligned_cols=91 Identities=23% Similarity=0.213 Sum_probs=61.3
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..++++++.|++|+ .+..|.+||||+|++... +
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~----------------------------------------------~ 60 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQ----------------------------------------------E 60 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCCCCeEEEEEECCc----------------------------------------------c
Confidence 46667777777775 355566677777666422 3
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG 145 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~ 145 (194)
++|++++++.||+|||+|.|...... ....|.|+|||++.++++++||++.+++.+..
T Consensus 61 ~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 61 KRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred ccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 45555555566666666655421111 23589999999999999999999999998653
No 83
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.7e-16 Score=110.38 Aligned_cols=105 Identities=25% Similarity=0.379 Sum_probs=77.5
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+++.+.+|++|+..|..|.+||||++.+... ...+|.+++++.||.|||.
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~----~~~kT~~~~~t~~P~Wne~------------------------- 52 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI----VKGRTVTISNTLNPVWDEV------------------------- 52 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCE----EeeceeEECCCcCCccCce-------------------------
Confidence 47899999999999999999999999998421 2345555555555555544
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
|.|.+... ...|.|+|||++.++++++||++.+++.++ + +...+.||.
T Consensus 53 ----------------f~~~v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l----------~---~~~~~~~~~ 100 (120)
T cd04045 53 ----------------LYVPVTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDL----------I---KKNEDGKYV 100 (120)
T ss_pred ----------------EEEEecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHh----------h---CCCCCceEE
Confidence 44444322 138999999999999999999999999744 3 225689999
Q ss_pred ccCCCC
Q psy6105 168 LMETVP 173 (194)
Q Consensus 168 L~~~~~ 173 (194)
|....+
T Consensus 101 ~~~~~~ 106 (120)
T cd04045 101 EYDDEE 106 (120)
T ss_pred ecCCCc
Confidence 988763
No 84
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.68 E-value=4.5e-16 Score=109.80 Aligned_cols=106 Identities=20% Similarity=0.318 Sum_probs=76.8
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecC-CCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKN-SLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
.|++.+++|++|+..+..+.+||||+|.+... ..+|+++++ ++||.|||.|.
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~t~nP~Wne~f~---------------------- 54 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQ-----ERKSKVAKGDGRNPEWNEKFK---------------------- 54 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCE-----eeeeeEcCCCCCCCcccceEE----------------------
Confidence 47899999999999999999999999998532 344444442 45555555554
Q ss_pred eeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW 165 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W 165 (194)
|.+..... ....|.|.|||++.++++++||++.+++.++ +. +.....|
T Consensus 55 -------------------f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l----------~~--~~~~~~~ 103 (124)
T cd04049 55 -------------------FTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL----------FE--EGVEPGT 103 (124)
T ss_pred -------------------EEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHh----------hh--CCCCcCc
Confidence 44433211 1247899999999988999999999999743 32 3456899
Q ss_pred EEccCC
Q psy6105 166 YPLMET 171 (194)
Q Consensus 166 ~~L~~~ 171 (194)
+.|.+.
T Consensus 104 ~~l~p~ 109 (124)
T cd04049 104 AELVPA 109 (124)
T ss_pred eEeecc
Confidence 999885
No 85
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=4.9e-16 Score=109.74 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=79.6
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+++.+++|++|+..+..+.+||||+|++.+. .+ ++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~----~~-----------------------------------------~~ 36 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPS----HK-----------------------------------------QS 36 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCC----cc-----------------------------------------cc
Confidence 7899999999999999999999999999752 12 34
Q ss_pred ceeec-CCCCCcccceEEEEecCCCC--CCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCC---Cce
Q psy6105 89 TSVKK-NSLNPFYNEALLFDVPASNV--NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPR---QPV 162 (194)
Q Consensus 89 T~~~~-~t~nP~~~e~f~f~v~~~~l--~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~---~~~ 162 (194)
|.+.. ++.||.|||.|.|.+....+ ....|.++|||++.++++++||++.+++.++ +.... ...
T Consensus 37 T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l----------~~~~~~~~~~~ 106 (125)
T cd04051 37 TPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL----------LDGASPAGELR 106 (125)
T ss_pred cccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHh----------hcccCCCCcce
Confidence 44432 35666666666666654421 2358999999999888999999999999854 33322 135
Q ss_pred EeEEEccCCC
Q psy6105 163 TQWYPLMETV 172 (194)
Q Consensus 163 ~~W~~L~~~~ 172 (194)
..||+|....
T Consensus 107 ~~~~~l~~~~ 116 (125)
T cd04051 107 FLSYQLRRPS 116 (125)
T ss_pred eEEEEeECCC
Confidence 7899998643
No 86
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.68 E-value=5e-16 Score=108.97 Aligned_cols=103 Identities=24% Similarity=0.333 Sum_probs=74.1
Q ss_pred eccCCCCCCCCCCCCCCcEEEEEEEcCC--eEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeece
Q psy6105 13 NYCRPTIGNRSIPSVADPYVKVYLVCEG--KRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTS 90 (194)
Q Consensus 13 ~~~a~~l~~~d~~g~~dpyv~v~l~~~~--~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~ 90 (194)
.++|++|+.+|..|.+||||+|++.+.. +... .++|+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~-----------------------------------------~~kT~ 44 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVE-----------------------------------------IGRTE 44 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEE-----------------------------------------eccEe
Confidence 3788999999999999999999998762 1222 45555
Q ss_pred eecCCCCCcccceEEEEecCCCCCCceEEEEEEecCC----CCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105 91 VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR----IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 91 ~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
+++++.||+|+|+|.|.+..+.. ..|.|+|||++. ++++++||++.+++..+ +. +.....|+
T Consensus 45 vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l----------~~--~~~~~~~~ 110 (120)
T cd04048 45 VIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI----------VS--SPGQKLTL 110 (120)
T ss_pred EeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH----------hc--CCCcEEEE
Confidence 66666666666666665433222 379999999987 78999999999999843 32 34456789
Q ss_pred EccC
Q psy6105 167 PLME 170 (194)
Q Consensus 167 ~L~~ 170 (194)
+|.+
T Consensus 111 ~l~~ 114 (120)
T cd04048 111 PLKG 114 (120)
T ss_pred EccC
Confidence 8843
No 87
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=1.1e-15 Score=106.28 Aligned_cols=104 Identities=29% Similarity=0.421 Sum_probs=77.8
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+++.+++|++|+..+..|.+||||+|.+.+. ... +
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~----~~~-----------------------------------------~ 35 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGE----KVF-----------------------------------------K 35 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCC----cce-----------------------------------------e
Confidence 5788999999999999899999999998532 123 4
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
|+++.++.+|.|||+|.|.+... ....|.|+|||++..+++++||++.+++..+.. +.....|.+|
T Consensus 36 T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~------------~~~~~~~~~L 101 (115)
T cd04040 36 TKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEP------------EETTELTLPL 101 (115)
T ss_pred eceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCC------------CCcEEEEEEC
Confidence 44445555666666666655432 234899999999998899999999999975431 4567899999
Q ss_pred cCC
Q psy6105 169 MET 171 (194)
Q Consensus 169 ~~~ 171 (194)
.+.
T Consensus 102 ~~~ 104 (115)
T cd04040 102 DGQ 104 (115)
T ss_pred cCC
Confidence 764
No 88
>KOG1011|consensus
Probab=99.67 E-value=2.9e-16 Score=132.99 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCceeEEEEEcC--CeEeEEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCCCC
Q psy6105 69 ANPYVKVYLVCE--GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG 145 (194)
Q Consensus 69 ~dpyv~v~l~~~--~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~ 145 (194)
--|||+|.+.+. +.+.++..|+.+.++..|.|||+|.|-+..+.- ....|.+.|.|+-..+.|..+|...+.|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 478999999743 335667778888999999999999998876543 34578899999887788999999999998653
Q ss_pred cchhhHHHHhhCCCCceEeEEEccC
Q psy6105 146 IGRDHWLEMLDNPRQPVTQWYPLME 170 (194)
Q Consensus 146 ~~~~~W~~~l~~p~~~~~~W~~L~~ 170 (194)
. ....+.|++|.-
T Consensus 1225 ~------------kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1225 D------------KGSCACWVPLGR 1237 (1283)
T ss_pred h------------cCceeEeeeccc
Confidence 1 456789999954
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1.6e-15 Score=106.86 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=75.1
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
..+++.++.|++|++.+..+.+||||++.+.+...... .
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~-----------------------------------------~ 53 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKAT-----------------------------------------K 53 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCC-----------------------------------------c
Confidence 46899999999999999999999999999976521111 4
Q ss_pred eeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc
Q psy6105 87 KRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI 146 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~ 146 (194)
++|++++++.||+|||+|.|. +....+....|.|+|||++.+ .+++||++.++++++..
T Consensus 54 ~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 54 LRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred eeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCC
Confidence 566666666777777777774 333334445899999999888 88999999999997743
No 90
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=3e-15 Score=105.37 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=80.0
Q ss_pred eEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 8 SFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
.+++.+++|++|+..+ ..|.+||||++.+... ....+|+++++
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~--------------------------------- 46 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKD--------------------------------- 46 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecC---------------------------------
Confidence 4789999999999766 4567899999998752 12344444444
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE-eE
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT-QW 165 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~-~W 165 (194)
+.||.|||.|.|.+.. ....|.|+|||++..+++++||++.+++.++.. . .... .|
T Consensus 47 --------~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~----------~--~~~~~~~ 103 (124)
T cd04044 47 --------TSNPVWNETKYILVNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQ----------N--PEQENLT 103 (124)
T ss_pred --------CCCCcceEEEEEEeCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhcc----------C--ccccCcc
Confidence 4555555555554431 124899999999988899999999999985432 1 1222 34
Q ss_pred EEccCCCCCCccccCCCCcceeeeecC
Q psy6105 166 YPLMETVPGQIPLSHSSNLPSSLSCLN 192 (194)
Q Consensus 166 ~~L~~~~~~~~~~~~~~~~~~~~~~~~ 192 (194)
+.|.. +.+ ..|.+.+++.|+|
T Consensus 104 ~~~~~---~~k---~~G~i~~~l~~~p 124 (124)
T cd04044 104 KNLLR---NGK---PVGELNYDLRFFP 124 (124)
T ss_pred hhhhc---CCc---cceEEEEEEEeCC
Confidence 55532 222 2378888888876
No 91
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=5.8e-15 Score=106.42 Aligned_cols=123 Identities=16% Similarity=0.195 Sum_probs=83.3
Q ss_pred CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
-+.+|++.++.|++|++++ +|||.|.|... ...+|+++.++.||+|+|.|.|
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~----~vaRT~v~~~~~nP~W~E~F~f------------------- 60 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKT----LYARTTSKLKTDTLFWGEHFEF------------------- 60 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCE----EEEEEEEEcCCCCCcceeeEEe-------------------
Confidence 4578999999999999876 69999998754 2346666666555555555554
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecC-CC---CCCceeEEEEeCCCCCCcchhhHHHHhhCCCC
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYD-RI---GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQ 160 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~-~~---~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~ 160 (194)
..... . ..|.|.|+..+ .. .++++||.+.|++..+. .+.
T Consensus 61 ----------------------~~~~~-~--~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~------------~~~ 103 (146)
T cd04013 61 ----------------------SNLPP-V--SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVS------------SRQ 103 (146)
T ss_pred ----------------------cCCCc-c--cEEEEEEEEccCccccccCCcEEEEEEEEHHHhc------------CCC
Confidence 32111 1 25777776433 22 26789999999997442 378
Q ss_pred ceEeEEEccCCCCCCc-----cccCCCCcceeeeecC
Q psy6105 161 PVTQWYPLMETVPGQI-----PLSHSSNLPSSLSCLN 192 (194)
Q Consensus 161 ~~~~W~~L~~~~~~~~-----~~~~~~~~~~~~~~~~ 192 (194)
.+++||+|.+...+.. .....+.+.+++.|.+
T Consensus 104 ~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 104 FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 8999999998775531 1335567888877754
No 92
>KOG1028|consensus
Probab=99.61 E-value=2.6e-15 Score=125.79 Aligned_cols=109 Identities=28% Similarity=0.487 Sum_probs=92.5
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
+||||++++.+.. ..+.+|++.++++||+|||+|.|.++..++....|.++|||+|.|+++++||++.++|.....
T Consensus 188 sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~-- 263 (421)
T KOG1028|consen 188 SDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDL-- 263 (421)
T ss_pred CCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccc--
Confidence 7999999998664 468899999999999999999999988888889999999999999999999999999876531
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (194)
......|+.|++........ + |++-++|.|+|.
T Consensus 264 ----------~~~~~~w~~l~~~~~~~~~~-~-gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 264 ----------LSTTLFWKDLQPSSTDSEEL-A-GELLLSLCYLPT 296 (421)
T ss_pred ----------cccceeeeccccccCCcccc-c-ceEEEEEEeecC
Confidence 33367899999975444322 2 899999999985
No 93
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.60 E-value=1.9e-15 Score=104.41 Aligned_cols=92 Identities=22% Similarity=0.388 Sum_probs=63.4
Q ss_pred eccCCCCCCCCCCCCCCcEEEEEEEcCC-eEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeecee
Q psy6105 13 NYCRPTIGNRSIPSVADPYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSV 91 (194)
Q Consensus 13 ~~~a~~l~~~d~~g~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~~ 91 (194)
.++|++|+.+|..|.+||||+|++.+.. ......+|.++++++||.|| .|.|.+.
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~----------------------- 61 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ----------------------- 61 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH-----------------------
Confidence 4688999999999999999999988652 22234555555555555555 3332210
Q ss_pred ecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105 92 KKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI 144 (194)
Q Consensus 92 ~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 144 (194)
.+...+. ...|.|+|||++.++++++||++.++++.+
T Consensus 62 ---------------~l~~~~~-~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l 98 (110)
T cd04047 62 ---------------KLCNGDY-DRPIKIEVYDYDSSGKHDLIGEFETTLDEL 98 (110)
T ss_pred ---------------HhcCCCc-CCEEEEEEEEeCCCCCCcEEEEEEEEHHHH
Confidence 0111111 248999999999999999999999999854
No 94
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.60 E-value=1.1e-14 Score=100.85 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=59.8
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
|.+.++.|++|+ |.+||||++.+.+.++... +++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~-----------------------------------------~~K 34 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVK-----------------------------------------KAK 34 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccce-----------------------------------------eee
Confidence 467888999994 5689999998876522122 455
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEec-------CCCCCCceeEEEEeCCC
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDY-------DRIGSDELMGCTAIGSS 142 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~-------~~~~~~~~iG~~~i~l~ 142 (194)
|+++++++||+|||+|.|.+.. ...|.+.|||+ |..++|++||...+.|+
T Consensus 35 Tk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 35 TRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred eeeecCCCCCccceEEEEEeCC----CCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 5556666666666666666642 24899999997 56688999988888886
No 95
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=1.6e-14 Score=102.35 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=83.7
Q ss_pred eEEEeeccCCCCCCC--CCCCC--CCcEEEEEEEcCCeEeEEEeeEEecCCCC--ceeeeeEEEecCCCceeEEEEEcCC
Q psy6105 8 SFRADNYCRPTIGNR--SIPSV--ADPYVKVYLVCEGKRIRKKRTSVKKNSLN--PFYNEALLFDVPANPYVKVYLVCEG 81 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~--d~~g~--~dpyv~v~l~~~~~~~~~~~T~~~~~t~n--P~w~e~f~f~~~~dpyv~v~l~~~~ 81 (194)
.+|+.++-|++++.. +..|. +||||++.|.+. ...+++|.+..+++| |.||+.|.|.+.--|--...+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~---- 74 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIV---- 74 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeE----
Confidence 389999999996654 44774 999999999986 566899999999999 999999999865111000000
Q ss_pred eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc
Q psy6105 82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI 146 (194)
Q Consensus 82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~ 146 (194)
..++. -.|. + -..+.+....|.|+|||.|.+++|++||.+.++|..+.+
T Consensus 75 ---~~~~~--------~~~~----~-~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 75 ---VIKKE--------HFWS----L-DETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred ---EEeec--------cccc----c-CcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 01111 0111 0 001334456999999999999999999999999987653
No 96
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.59 E-value=1.9e-14 Score=101.72 Aligned_cols=105 Identities=26% Similarity=0.257 Sum_probs=70.3
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+++.+.+|+.+ ..+..+.+||||+|++... ...+|+++++|
T Consensus 3 ~L~V~i~~a~l~-~~~~~~~~dPyv~v~~~~~----~~~kT~v~~~t--------------------------------- 44 (125)
T cd04021 3 QLQITVESAKLK-SNSKSFKPDPYVEVTVDGQ----PPKKTEVSKKT--------------------------------- 44 (125)
T ss_pred eEEEEEEeeECC-CCCcCCCCCeEEEEEECCc----ccEEeeeeCCC---------------------------------
Confidence 578899999844 4445788999999988532 23444444444
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc---eEe
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP---VTQ 164 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~---~~~ 164 (194)
.+|+|||+|.|.+.. ...|.|+|||++..+.+++||++.++++.+ +..+... +..
T Consensus 45 --------~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l----------~~~~~~~~~~~~~ 102 (125)
T cd04021 45 --------SNPKWNEHFTVLVTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDI----------LKNHNGKLENVKL 102 (125)
T ss_pred --------CCCccccEEEEEeCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHh----------HhhcCCCccceEE
Confidence 455555555554432 137999999999999999999999999754 3222222 345
Q ss_pred EEEccCCC
Q psy6105 165 WYPLMETV 172 (194)
Q Consensus 165 W~~L~~~~ 172 (194)
|++|....
T Consensus 103 ~~~~~~~~ 110 (125)
T cd04021 103 TLNLSSEN 110 (125)
T ss_pred EEEEEccC
Confidence 99997544
No 97
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=2.6e-14 Score=98.90 Aligned_cols=98 Identities=24% Similarity=0.343 Sum_probs=74.7
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
+||||++.+.+. ..++|++++++.||+|||.|.|.+... ....|.|.|+|++.+ ++++||++.++|..+
T Consensus 13 ~dPYv~v~v~~~----~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l---- 81 (111)
T cd04052 13 LSPYAELYLNGK----LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDL---- 81 (111)
T ss_pred CCceEEEEECCE----EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHH----
Confidence 699999999432 357888888999999999999988543 335799999999988 899999999999743
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN 192 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~ 192 (194)
+.. .....+||+|.+. ..|.+.+++.+.|
T Consensus 82 ------~~~-~~~~~~w~~L~~~--------~~G~i~~~~~~~p 110 (111)
T cd04052 82 ------IDA-TSVGQQWFPLSGN--------GQGRIRISALWKP 110 (111)
T ss_pred ------Hhh-hhccceeEECCCC--------CCCEEEEEEEEec
Confidence 322 3345799999762 2345565566655
No 98
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.57 E-value=7e-14 Score=98.85 Aligned_cols=109 Identities=24% Similarity=0.290 Sum_probs=82.0
Q ss_pred eeEEEeeccCCCCCCCC--CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105 7 RSFRADNYCRPTIGNRS--IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d--~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~ 84 (194)
+.+++++++|++|+.++ ..+..||||++++..... + ..
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~-----~-----------------------------------~~ 41 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPA-----D-----------------------------------DS 41 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCC-----C-----------------------------------CC
Confidence 46899999999999988 578899999999975410 0 01
Q ss_pred EEeeceeecCCC-CCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105 85 RKKRTSVKKNSL-NPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT 163 (194)
Q Consensus 85 ~~~kT~~~~~t~-nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~ 163 (194)
.+++|++++++. ||+|||+|.|.+...+. ..|.++|||++.. ++++||++.++++.+.. ..
T Consensus 42 ~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~--~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~---------------g~ 103 (128)
T cd00275 42 AKFKTKVVKNNGFNPVWNETFEFDVTVPEL--AFLRFVVYDEDSG-DDDFLGQACLPLDSLRQ---------------GY 103 (128)
T ss_pred CcEeeeeecCCCcCCccCCcEEEEEeCCCe--EEEEEEEEeCCCC-CCcEeEEEEEEhHHhcC---------------ce
Confidence 256777766554 88888888888764432 4789999999888 89999999999985531 14
Q ss_pred eEEEccCCCC
Q psy6105 164 QWYPLMETVP 173 (194)
Q Consensus 164 ~W~~L~~~~~ 173 (194)
+|++|.....
T Consensus 104 ~~~~l~~~~~ 113 (128)
T cd00275 104 RHVPLLDSKG 113 (128)
T ss_pred EEEEecCCCC
Confidence 6888876543
No 99
>PLN03008 Phospholipase D delta
Probab=99.49 E-value=1.2e-13 Score=121.40 Aligned_cols=103 Identities=22% Similarity=0.368 Sum_probs=87.5
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
+||||+|.+... +..+|++++++.||+|||+|.|.+... ...|+++|+|+|.++ +++||++.|++..+.
T Consensus 77 SDPYV~I~Lg~~----rv~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~--- 145 (868)
T PLN03008 77 SDPYVTVVVPQA----TLARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIA--- 145 (868)
T ss_pred CCceEEEEECCc----ceeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcC---
Confidence 899999999432 366999999999999999999998653 248999999999996 589999999998663
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (194)
++..+.+|++|.... .+|..+.+.+.+++.|.|.
T Consensus 146 ---------~Ge~vd~Wl~Ll~~~--~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 146 ---------SGERISGWFPVLGAS--GKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred ---------CCCceEEEEEccccC--CCCCCCCcEEEEEEEEEEc
Confidence 377889999999865 4788889999999988775
No 100
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.46 E-value=2.6e-13 Score=88.53 Aligned_cols=85 Identities=31% Similarity=0.466 Sum_probs=66.3
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
|++.+++|++|+..+..+..||||++.+..... . .++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~-----------------------------------------~~~ 37 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--T-----------------------------------------KYK 37 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--E-----------------------------------------EEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--e-----------------------------------------eee
Confidence 678999999999999899999999999987511 1 345
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEE
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTA 138 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~ 138 (194)
|.+++++.+|.|+|+|.|.+...... .|.|+|||++.++++++||++.
T Consensus 38 T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 38 TKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp ECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence 55666666677777677765555443 4999999999998899999974
No 101
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.43 E-value=4e-13 Score=127.57 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=74.0
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
.+++++.+|+||. +..|.+||||++.++.+ . ++
T Consensus 1981 ~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~----~-----------------------------------------~~ 2013 (2102)
T PLN03200 1981 SLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG----P-----------------------------------------PR 2013 (2102)
T ss_pred ceEEEEeeccccc--cccCCCCCeEEEEECCC----C-----------------------------------------cc
Confidence 4788999999997 44688999999998843 1 33
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
||++++++.||+|||.|+|.+..+... ..|.|+|||+|.+++ +.||.+.|++... + .+..+..||+
T Consensus 2014 kTkvvk~~~nP~Wne~f~~~~~~p~~~-~~l~iev~d~d~f~k-d~~G~~~i~l~~v----------v--~~~~~~~~~~ 2079 (2102)
T PLN03200 2014 QTKVVSHSSSPEWKEGFTWAFDSPPKG-QKLHISCKSKNTFGK-SSLGKVTIQIDRV----------V--MEGTYSGEYS 2079 (2102)
T ss_pred cccccCCCCCCCcccceeeeecCCCCC-CceEEEEEecCccCC-CCCceEEEEHHHH----------h--cCceeeeeee
Confidence 555555555566666555544333322 379999999999955 5999999999854 2 2678899999
Q ss_pred ccC
Q psy6105 168 LME 170 (194)
Q Consensus 168 L~~ 170 (194)
|.+
T Consensus 2080 L~~ 2082 (2102)
T PLN03200 2080 LNP 2082 (2102)
T ss_pred cCc
Confidence 986
No 102
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.39 E-value=3.2e-12 Score=114.63 Aligned_cols=99 Identities=25% Similarity=0.344 Sum_probs=74.4
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
+||||++.+.+. ..++|+++++++||+|||.+..++..... ..+.|.|+|+|...+++.||.+.++|..+..+.
T Consensus 1061 sDpfv~~~ln~k----~vyktkv~KktlNPvwNEe~~i~v~~r~~--D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1061 SDPFVKLFLNEK----SVYKTKVVKKTLNPVWNEEFTIEVLNRVK--DVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred CCceEEEEecce----ecccccchhccCCCCccccceEeeecccc--ceEEEEEeecccCCCccccccccccHhhcCcCC
Confidence 899999998544 38999999999999999999998875543 489999999999999999999999999876543
Q ss_pred -hhHHHHhhCC-----CCceEeEEEccCCCC
Q psy6105 149 -DHWLEMLDNP-----RQPVTQWYPLMETVP 173 (194)
Q Consensus 149 -~~W~~~l~~p-----~~~~~~W~~L~~~~~ 173 (194)
..|.-.+..+ +....-|+.+.+.-.
T Consensus 1135 ~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038 1135 TTNSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred ccceeeeccCcceEecccEeecceecchhhh
Confidence 2333222221 233445666655543
No 103
>KOG1328|consensus
Probab=99.33 E-value=6e-13 Score=114.21 Aligned_cols=98 Identities=21% Similarity=0.369 Sum_probs=82.0
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
++-+.++.|+++.+.|.+|.+||||.|.++|. |.|. . ...+
T Consensus 948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~-----------------------~~fp-----------~-----v~~q 988 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPK-----------------------FRFP-----------A-----VPVQ 988 (1103)
T ss_pred chhhhhhccccccccCCCCCCCCeEEEEeccc-----------------------cccc-----------c-----chhh
Confidence 34467899999999999999999999999985 1111 0 1267
Q ss_pred eceeecCCCCCcccceEEEEecCCCCC--CceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVN--DVSLIIKVIDYDRIGSDELMGCTAIGSSFI 144 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~--~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 144 (194)
+|+++++|+||+|+|+|.|.|+++... .+.|.++|.|+|-++.++|-|++.+.|+.+
T Consensus 989 ~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 989 KTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred hhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCC
Confidence 889999999999999999998887543 568999999999999999999999999875
No 104
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.27 E-value=5.8e-11 Score=79.25 Aligned_cols=95 Identities=35% Similarity=0.507 Sum_probs=71.8
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+++.+++|++|...+..+..+|||++.+.+.. . ..++
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~-----------------------------------------~~~~ 38 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--K-----------------------------------------EKKK 38 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--c-----------------------------------------ceEe
Confidence 67888999999888766778899998887651 0 1456
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
|+++.++.+|.|||.|.|.+.... ...|.|+|||.+..+.+.++|.+.+++..+..+.
T Consensus 39 T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 39 TKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 666666667888887777765543 3589999999888778899999999987665433
No 105
>KOG1326|consensus
Probab=99.26 E-value=4.5e-12 Score=111.93 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=50.7
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
--|+.+..|-+|.+.|.+|.+||||+|.++.. ....+...+.+|+||+|++.|.+...
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~---~~~d~~~yip~tlnPVfgkmfel~~~ 671 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK---RTLDRAHYIPNTLNPVFGKMFELECL 671 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccc---hhhhhhhcCcCCCCcHHHHHHHhhcc
Confidence 35799999999999999999999999999864 33478899999999999999988655
No 106
>PLN02223 phosphoinositide phospholipase C
Probab=99.26 E-value=1.3e-11 Score=104.57 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=68.8
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
.||||+|.+.+......+++|.+..++.||+|||+|.|.+..+++ +.|.|.|+|+|..+.+++||+..+++..+..|+
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEVYDYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEEEecCCCCCCcEEEEEecchHHhcCCc
Confidence 689999999876555566778877889999999999999987776 589999999999889999999999999887666
Q ss_pred hh
Q psy6105 149 DH 150 (194)
Q Consensus 149 ~~ 150 (194)
.|
T Consensus 513 R~ 514 (537)
T PLN02223 513 RA 514 (537)
T ss_pred ee
Confidence 44
No 107
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.25 E-value=7.3e-11 Score=78.43 Aligned_cols=102 Identities=31% Similarity=0.472 Sum_probs=68.0
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k 88 (194)
+.+.+++|++|......+..+|||.+.+... ...+|.++.++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~----~~~~T~~~~~~---------------------------------- 42 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK----QKFKTKVVKNT---------------------------------- 42 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC----ceEecceeCCC----------------------------------
Confidence 3567788888877666777888888887641 13444444444
Q ss_pred ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
.||.|+|.|.|.+... ....|.|+|++++..+.+.+||.+.+++..+. .......+|++|
T Consensus 43 -------~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~-----------~~~~~~~~~~~l 102 (102)
T cd00030 43 -------LNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL-----------DSGKEGELWLPL 102 (102)
T ss_pred -------CCCcccceEEEEccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh-----------hcCCcCcceecC
Confidence 4555555555544331 22489999999888877899999999997553 235556677765
No 108
>KOG1328|consensus
Probab=99.24 E-value=1.4e-12 Score=112.04 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=92.8
Q ss_pred eeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEE-EeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeece
Q psy6105 12 DNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRK-KRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTS 90 (194)
Q Consensus 12 ~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~-~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~ 90 (194)
-.+-|++|.++|.+|.+|||+++.+.|...+... .--+-.+..+.-.|..+ ++-+ -+..+-|+
T Consensus 119 s~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~---------------GpiP-AKlIkats 182 (1103)
T KOG1328|consen 119 SLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDT---------------GPIP-AKLIKATS 182 (1103)
T ss_pred HHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccC---------------CCCc-HHHhhhcc
Confidence 3567899999999999999999999886211110 00011111111110000 0000 01245688
Q ss_pred eecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC------------------------------------CCcee
Q psy6105 91 VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG------------------------------------SDELM 134 (194)
Q Consensus 91 ~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~------------------------------------~~~~i 134 (194)
+++.|+||.|+|.|.|.| +++....+.+.|||+|.-. .|+|+
T Consensus 183 vk~~TLnPkW~EkF~F~I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFL 260 (1103)
T KOG1328|consen 183 VKKKTLNPKWSEKFQFTI--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFL 260 (1103)
T ss_pred cccccCCcchhhheeeeh--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccc
Confidence 899999999999999998 5666679999999987422 38999
Q ss_pred EEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceee
Q psy6105 135 GCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188 (194)
Q Consensus 135 G~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~ 188 (194)
|.+.|++.++. -..+.+||+|++++... ..+|.-+|-.++
T Consensus 261 GciNipl~EiP-------------~~Gld~WFkLepRS~~S-~VqG~~~LklwL 300 (1103)
T KOG1328|consen 261 GCINIPLAEIP-------------PDGLDQWFKLEPRSDKS-KVQGQVKLKLWL 300 (1103)
T ss_pred cccccchhcCC-------------cchHHHHhccCcccccc-cccceEEEEEEE
Confidence 99999999885 44556677887765433 233444444444
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.18 E-value=4.2e-11 Score=103.25 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=70.5
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
.||||+|.+.+.+....+++|++..++.||+|||+|.|.+..+++ +.|.|.|+|+|..+.++|||+.+|++..+.+|+
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc
Confidence 599999999876655567788888899999999999999887776 589999999999889999999999999988777
Q ss_pred hh
Q psy6105 149 DH 150 (194)
Q Consensus 149 ~~ 150 (194)
.|
T Consensus 574 R~ 575 (598)
T PLN02230 574 HA 575 (598)
T ss_pred ce
Confidence 66
No 110
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.16 E-value=8.7e-11 Score=101.12 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
.||||+|.+.+.+....+++|+++.++.||+|||+|.|.+..+++ +.|.+.|+|+|..+.+++||+..|++..+..|+
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc
Confidence 689999999865555567789999999999999999999877776 589999999998888999999999999988777
Q ss_pred hh
Q psy6105 149 DH 150 (194)
Q Consensus 149 ~~ 150 (194)
.|
T Consensus 557 R~ 558 (581)
T PLN02222 557 RA 558 (581)
T ss_pred ce
Confidence 66
No 111
>PLN02952 phosphoinositide phospholipase C
Probab=99.16 E-value=8.6e-11 Score=101.48 Aligned_cols=90 Identities=26% Similarity=0.365 Sum_probs=75.0
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
.||||+|.+.+.+....+++|+++.++.||+|||+|.|.+..+++ +.|.|.|+|+|..+.++++|+..|++..+..|+
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc
Confidence 589999999876555667899999999999999999999887766 589999999999889999999999999875433
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCC
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQ 175 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~ 175 (194)
+|.+|.+.....
T Consensus 575 ---------------R~VpL~~~~G~~ 586 (599)
T PLN02952 575 ---------------RSVPLHDKKGEK 586 (599)
T ss_pred ---------------eeEeCcCCCCCC
Confidence 478887655433
No 112
>KOG0169|consensus
Probab=99.14 E-value=5.1e-11 Score=103.26 Aligned_cols=135 Identities=25% Similarity=0.384 Sum_probs=94.7
Q ss_pred eEEEeeccCCCCCCCCC---CCCCCcEEEEEEEcCCeEeEEEeeEEecCC-CCceeeeeEEEecCCCceeEEEEEcCCeE
Q psy6105 8 SFRADNYCRPTIGNRSI---PSVADPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVPANPYVKVYLVCEGKR 83 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~---~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~~~~dpyv~v~l~~~~~~ 83 (194)
-||+.+.|..-|.+.-. ++.-+| +-.+.+. ....+-+++.+- .-|.++.+- |.-.+||||.|.+.+-+..
T Consensus 582 ~Fr~NGgCGYVlKP~~L~~~~~~F~P--~~~~~~~---~~tL~IkI~sGq~~~~~~~~~~-~~~~~dP~v~VeI~Gvp~D 655 (746)
T KOG0169|consen 582 MFRANGGCGYVLKPDFLLDSGSTFDP--KSNLPPV---KKTLKIKIISGQGWLPDFGKTK-FGEISDPDVYVEIAGVPAD 655 (746)
T ss_pred hhccCCCccceECcHHHcCCCCccCC--CCCCCCC---CceeEEEEEecCcccCCCCCCc-ccccCCCCEEEEEcccccc
Confidence 37888889888876533 333444 1111111 111223333333 333333221 1112689999998877777
Q ss_pred eEEeece-eecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhh
Q psy6105 84 IRKKRTS-VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDH 150 (194)
Q Consensus 84 ~~~~kT~-~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~ 150 (194)
...++|+ +..++.||.|+|+|.|.+..+++ +.|.+.|+|+|..++|+|+|+.+|++..+.+|+.|
T Consensus 656 ~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 656 CAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred hhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEEecCCCCcccccceeeccHHHhhCceee
Confidence 7789999 55689999999999999998888 58999999999999999999999999999888887
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=99.06 E-value=6.9e-10 Score=95.41 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=69.2
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcc-cceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFY-NEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~-~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
.||||+|.+.+.+....+++|+++.++.||+| +|+|.|.+..+++ +.|.+.|+|+|..+.+++||+..|+++.+..|
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lRf~V~D~d~~~~d~figq~~lPv~~Lr~G 535 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLWFKVQDYDNDTQNDFAGQTCLPLPELKSG 535 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEEEEEEeCCCCCCCCEEEEEEcchhHhhCC
Confidence 58999999986655556789999888899999 9999999887776 58999999999888999999999999988766
Q ss_pred hhh
Q psy6105 148 RDH 150 (194)
Q Consensus 148 ~~~ 150 (194)
+.|
T Consensus 536 YR~ 538 (567)
T PLN02228 536 VRA 538 (567)
T ss_pred eeE
Confidence 655
No 114
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=98.05 Aligned_cols=69 Identities=32% Similarity=0.530 Sum_probs=56.4
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI 144 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 144 (194)
+|||++|.+.. ..+++|-....++||+|++.+.-.+.... ..|.+...|+...+.|..||++.+..+..
T Consensus 732 ~dPya~v~~n~----~~k~rti~~~~~~npiw~~i~Yv~v~sk~---~r~~l~~~~~~~sgddr~lg~~~i~vsn~ 800 (1227)
T COG5038 732 SDPYATVLVNN----LVKYRTIYGSSTLNPIWNEILYVPVTSKN---QRLTLECMDYEESGDDRNLGEVNINVSNV 800 (1227)
T ss_pred cccceEEEecc----eeEEEEecccCccccceeeeEEEEecCCc---cEEeeeeecchhccccceeceeeeeeeee
Confidence 89999998854 46899999999999999997766654322 25778888888899999999999999865
No 115
>KOG1031|consensus
Probab=99.05 E-value=6.4e-10 Score=94.12 Aligned_cols=130 Identities=18% Similarity=0.344 Sum_probs=94.6
Q ss_pred EEEeeccCCCCCCCCCCC-CCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105 9 FRADNYCRPTIGNRSIPS-VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g-~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~ 87 (194)
+-+....||+|+-||... ..|.||.|++... ..
T Consensus 5 l~vki~a~r~lpvmdkasd~tdafveik~~n~----------------------------------------------t~ 38 (1169)
T KOG1031|consen 5 LGVKIKAARHLPVMDKASDLTDAFVEIKFANT----------------------------------------------TF 38 (1169)
T ss_pred ceeEEEeccCCcccccccccchheeEEEeccc----------------------------------------------ce
Confidence 446667778888777544 4566776666543 44
Q ss_pred eceeecCCCCCccc-ceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105 88 RTSVKKNSLNPFYN-EALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY 166 (194)
Q Consensus 88 kT~~~~~t~nP~~~-e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~ 166 (194)
+|.+-.+++||.|| +.|.|++...++++..|.|.+.|+|..+.++-||.+.|+++-+.-+.. .+.....+..+.+|+
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~a--aqavhgkgtvisgw~ 116 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEA--AQAVHGKGTVISGWF 116 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhH--HhhhcCCceEEeeee
Confidence 55555566777776 568898988899889999999999999999999999999986542111 122334477889999
Q ss_pred EccCCCCCCccccCCCCcceeee
Q psy6105 167 PLMETVPGQIPLSHSSNLPSSLS 189 (194)
Q Consensus 167 ~L~~~~~~~~~~~~~~~~~~~~~ 189 (194)
++.+..-|-+ |..|+-|++.
T Consensus 117 pifdtihgir---geinvivkvd 136 (1169)
T KOG1031|consen 117 PIFDTIHGIR---GEINVIVKVD 136 (1169)
T ss_pred ecceeccccc---ceeEEEEEEe
Confidence 9999876655 7777776653
No 116
>KOG1326|consensus
Probab=99.01 E-value=9.3e-11 Score=103.80 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=50.0
Q ss_pred eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEe
Q psy6105 8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 66 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~ 66 (194)
-+|+..+.|++|.+.|..+.+|||+.+.+... .+.|.++.+|+||.|+++..|.
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~q-----s~~T~~v~~tl~ptwdq~~~f~ 260 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQ-----SKETEVVPGTLNPTWDQTIIFD 260 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccc-----cceeEeecCcCCCCccceeecc
Confidence 46888899999999999999999999999876 7999999999999999999985
No 117
>PLN02270 phospholipase D alpha
Probab=98.86 E-value=1.1e-08 Score=90.46 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=83.4
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCC-CCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
+||||.|.+... +..+|+++.+. .||+|+|+|...+.-.. ..++++|.|.+.++. .+||.+.|+...+
T Consensus 47 ~~~y~tv~~~~a----~v~rtr~~~~~~~~p~w~e~f~i~~ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~~--- 115 (808)
T PLN02270 47 SQLYATIDLEKA----RVGRTRKIENEPKNPRWYESFHIYCAHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEEI--- 115 (808)
T ss_pred CCceEEEEeCCc----EEEEEeecCCCCCCCccccceEEeeccCc---ceEEEEEecCCccCc-eEEEEEEEEHHHh---
Confidence 799999998654 58899999874 69999998887664322 489999999998865 6999999999744
Q ss_pred hhhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105 148 RDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 148 ~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (194)
+. +..+.+||+|... +.+|..+...+.+++.|.+.
T Consensus 116 -------~~--g~~i~~~~~~~~~--~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 116 -------LD--GEEVDRWVEILDN--DKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred -------cC--CCccccEEeccCC--CCCcCCCCCEEEEEEEEEEc
Confidence 21 6679999999884 47788888999999988764
No 118
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.84 E-value=9.5e-10 Score=71.21 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=59.2
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc-chhhHHH
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI-GRDHWLE 153 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~W~~ 153 (194)
..||+...+..||+|.|+|.|.+...++.+..|.+.|+. ...+.+.||.+.+++.+.+. +.+||.+
T Consensus 36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCCHHHhhhhhc
Confidence 678888999999999999999999899999999999987 56788999999999999885 6789975
No 119
>KOG0905|consensus
Probab=98.81 E-value=2.6e-09 Score=96.26 Aligned_cols=91 Identities=25% Similarity=0.498 Sum_probs=79.9
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
+||||+.++.+..++..++||+++++|.||.|||.+.+. ++.+.+.++.|.++||..+.+..+.++|.+.|+|....-
T Consensus 1545 P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l- 1623 (1639)
T KOG0905|consen 1545 PDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDL- 1623 (1639)
T ss_pred CCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcch-
Confidence 689999999999999999999999999999999999998 777778888999999999998899999999999987631
Q ss_pred hhhHHHHhhCCCCceEeEEEccCC
Q psy6105 148 RDHWLEMLDNPRQPVTQWYPLMET 171 (194)
Q Consensus 148 ~~~W~~~l~~p~~~~~~W~~L~~~ 171 (194)
.+...+||+|...
T Consensus 1624 -----------~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1624 -----------LKESVGWYNLGAC 1636 (1639)
T ss_pred -----------hhhhcceeecccc
Confidence 3334599999654
No 120
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.70 E-value=6e-08 Score=66.92 Aligned_cols=54 Identities=30% Similarity=0.349 Sum_probs=42.0
Q ss_pred CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCC--CceeEEEEEc
Q psy6105 22 RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA--NPYVKVYLVC 79 (194)
Q Consensus 22 ~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~~ 79 (194)
...+|.+||||+|.+... ...+|++++++.||.|||.|.|.+.. +-.+.+.+.+
T Consensus 7 ~~~~G~~dPYv~v~v~~~----~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d 62 (111)
T cd04052 7 ESKTGLLSPYAELYLNGK----LVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD 62 (111)
T ss_pred cccCCCCCceEEEEECCE----EEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEE
Confidence 346889999999999642 35789999999999999999998763 3445555543
No 121
>KOG1011|consensus
Probab=98.67 E-value=1.8e-08 Score=86.40 Aligned_cols=82 Identities=29% Similarity=0.488 Sum_probs=64.9
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-----------CCCceeEEE
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-----------GSDELMGCT 137 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-----------~~~~~iG~~ 137 (194)
+||||.+.++.. +++|+++...+||+|||.|.|+..... ..|.+.|||.|.. .+|+|+|+.
T Consensus 316 sdpyvt~qv~kt-----krrtrti~~~lnpvw~ekfhfechnst---drikvrvwded~dlksklrqkl~resddflgqt 387 (1283)
T KOG1011|consen 316 SDPYVTAQVGKT-----KRRTRTIHQELNPVWNEKFHFECHNST---DRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQT 387 (1283)
T ss_pred CCCcEEEeeccc-----chhhHhhhhccchhhhhheeeeecCCC---ceeEEEEecCcccHHHHHHHHhhhcccccccce
Confidence 899999988654 789999999999999999999876543 4899999997632 379999999
Q ss_pred EeCCCCCCcchhhHHHHhhCCCCceEeEEEccCCC
Q psy6105 138 AIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV 172 (194)
Q Consensus 138 ~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~ 172 (194)
.|.+..+ ...+.-||+|.-+.
T Consensus 388 vievrtl--------------sgemdvwynlekrt 408 (1283)
T KOG1011|consen 388 VIEVRTL--------------SGEMDVWYNLEKRT 408 (1283)
T ss_pred eEEEEec--------------ccchhhhcchhhcc
Confidence 9988765 33455677775543
No 122
>KOG1264|consensus
Probab=98.65 E-value=1.7e-07 Score=82.23 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=62.3
Q ss_pred CceeEEEEEcCCeEeE-EeeceeecCCCCCccc-ceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105 70 NPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYN-EALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 70 dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~-e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
.|||.|.+.+..-... .+.|.++.+.+||+|| |.|+|++..+++ +.|.+.|+|.|.++...|||++..++..+..|
T Consensus 1086 cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~--A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1086 CPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF--AFLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred CCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce--EEEEEEEecccccCCcceeeeeecchhhhhcc
Confidence 4778887765443333 4455567789999999 999999988876 58999999999999999999999999987655
Q ss_pred h
Q psy6105 148 R 148 (194)
Q Consensus 148 ~ 148 (194)
.
T Consensus 1164 f 1164 (1267)
T KOG1264|consen 1164 F 1164 (1267)
T ss_pred c
Confidence 4
No 123
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.62 E-value=1.5e-07 Score=63.41 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=60.1
Q ss_pred EEeeccCCCCCCCC---CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105 10 RADNYCRPTIGNRS---IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK 86 (194)
Q Consensus 10 r~~~~~a~~l~~~d---~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~ 86 (194)
.+++.||||+.-.+ ..+.+||||.|++... .+
T Consensus 2 ~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~---------------------------------------------~k 36 (109)
T cd08689 2 TITITSARDVDHIASPRFSKRPETYVSIKVEDV---------------------------------------------ER 36 (109)
T ss_pred EEEEEEEecCccccchhhccCCCcEEEEEECCE---------------------------------------------EE
Confidence 46777888887666 5666777777777642 25
Q ss_pred eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105 87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
.+|+. +.||.|||+|.|.+. . ...++|+|||+.. ...--||..-+.++.+-.+
T Consensus 37 aRTr~---srnd~WnE~F~i~Vd--k--~nEiel~VyDk~~-~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 37 ARTKP---SRNDRWNEDFEIPVE--K--NNEEEVIVYDKGG-DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred EeccC---CCCCcccceEEEEec--C--CcEEEEEEEeCCC-CeecceeeehhhHHHHHHH
Confidence 55555 478999999888883 2 2489999999754 2455789999998876443
No 124
>PLN03008 Phospholipase D delta
Probab=98.51 E-value=1.6e-07 Score=83.55 Aligned_cols=40 Identities=33% Similarity=0.485 Sum_probs=34.5
Q ss_pred CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 25 PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 25 ~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
.+.+||||+|.|+.. ++.+|+++++++||+|||.|.|.+.
T Consensus 74 ~~tSDPYV~I~Lg~~----rv~RTrVi~n~~NPvWNE~F~f~va 113 (868)
T PLN03008 74 VITSDPYVTVVVPQA----TLARTRVLKNSQEPLWDEKFNISIA 113 (868)
T ss_pred cCCCCceEEEEECCc----ceeeEEeCCCCCCCCcceeEEEEec
Confidence 357899999999543 3679999999999999999999986
No 125
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.51 E-value=9.8e-08 Score=69.24 Aligned_cols=42 Identities=43% Similarity=0.706 Sum_probs=36.1
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecC
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA 110 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~ 110 (194)
+||||+|.+.+......+++|+++++++||+|||+|.|.+..
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~ 60 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTI 60 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEec
Confidence 799999999875444457899999999999999999999853
No 126
>KOG2059|consensus
Probab=98.51 E-value=2.1e-07 Score=80.44 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=73.4
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
.|+|+.|.+..+ ...+|.++.+++.|.|.|.|.|.++.. . ..|.+-|||.| +++|+.||.+.|.-..+
T Consensus 26 ~D~yC~v~lD~E----~v~RT~tv~ksL~PF~gEe~~~~iP~~-F--~~l~fYv~D~d-~~~D~~IGKvai~re~l---- 93 (800)
T KOG2059|consen 26 RDCYCTVNLDQE----EVCRTATVEKSLCPFFGEEFYFEIPRT-F--RYLSFYVWDRD-LKRDDIIGKVAIKREDL---- 93 (800)
T ss_pred cCcceEEeecch----hhhhhhhhhhhcCCccccceEEecCcc-e--eeEEEEEeccc-cccccccceeeeeHHHH----
Confidence 799999998654 478999999999999999999999753 2 48999999999 89999999999876533
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCCc
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQI 176 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~ 176 (194)
...| ....|+.|++..++..
T Consensus 94 ------~~~~--~~d~W~~L~~VD~dsE 113 (800)
T KOG2059|consen 94 ------HMYP--GKDTWFSLQPVDPDSE 113 (800)
T ss_pred ------hhCC--CCccceeccccCCChh
Confidence 3333 6789999999988774
No 127
>KOG1013|consensus
Probab=98.49 E-value=8.5e-08 Score=76.30 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=78.1
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-CC-ceeEEEEEcCC---
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-AN-PYVKVYLVCEG--- 81 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-~d-pyv~v~l~~~~--- 81 (194)
..+-+.......|.++|.+|-+||||+.++.++-+...+++|.+.++|+||.||+.|.|.+. +| .|+++.+....
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~ 312 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI 312 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC
Confidence 34556666668889999999999999999999877888999999999999999999999987 22 46666654211
Q ss_pred ----------eEeEEeeceeecCCCCCcccceEEEEe
Q psy6105 82 ----------KRIRKKRTSVKKNSLNPFYNEALLFDV 108 (194)
Q Consensus 82 ----------~~~~~~kT~~~~~t~nP~~~e~f~f~v 108 (194)
.....+++.+.+....+.|++.+.|..
T Consensus 313 G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ 349 (362)
T KOG1013|consen 313 GKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFER 349 (362)
T ss_pred CcCccCCCcccccccccchhhcCcccccccccccccc
Confidence 122356677777778888887766653
No 128
>KOG1327|consensus
Probab=98.42 E-value=1.2e-06 Score=74.43 Aligned_cols=74 Identities=28% Similarity=0.463 Sum_probs=59.7
Q ss_pred CCceeEEEEE-cCCeEeEEeeceeecCCCCCcccceEEEEecCCCCC----CceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105 69 ANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVN----DVSLIIKVIDYDRIGSDELMGCTAIGSSF 143 (194)
Q Consensus 69 ~dpyv~v~l~-~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~----~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 143 (194)
+|||..++-. +.+.....++|.+++++++|.|.+ |.++...+. +..++|.+||++..+++++||.+...+..
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~ 233 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSE 233 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHH
Confidence 8999988776 566677889999999999999995 554444332 36899999999999999999999987765
Q ss_pred CC
Q psy6105 144 IG 145 (194)
Q Consensus 144 ~~ 145 (194)
..
T Consensus 234 ~~ 235 (529)
T KOG1327|consen 234 LQ 235 (529)
T ss_pred hc
Confidence 53
No 129
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.38 E-value=7e-07 Score=62.23 Aligned_cols=88 Identities=25% Similarity=0.437 Sum_probs=65.2
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecC-------------CCCCCceEEEEEEecCC--------
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-------------SNVNDVSLIIKVIDYDR-------- 127 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~-------------~~l~~~~l~i~V~d~~~-------- 127 (194)
-++||++.+..-+ .....+|+++.++.-|.|+..+.|..+. +-+....+.++||+...
T Consensus 33 VN~yv~i~lSFl~-~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 33 VNSYVTIHLSFLP-EKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred cceEEEEEeccCC-CCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 5689988865211 1247889999999999999999997541 23456689999998532
Q ss_pred --CCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 128 --IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 128 --~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
..+|-+||.+.|++. ++|.+ +..+++||++
T Consensus 112 ~~~~~DilLG~v~IPl~----------~Ll~~-rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLR----------DLLTK-RSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHH----------HHhhc-ccCccccccC
Confidence 235668999999996 55544 8999999986
No 130
>PLN02352 phospholipase D epsilon
Probab=98.26 E-value=3.1e-06 Score=75.07 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=71.1
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
.+|||.|.+... +..+| .+.-||+|+|+|...+.- ..+..++++|.| ...+||.+.|+...+
T Consensus 36 ~~~y~tv~~~~~----~v~rt---~~~~~p~w~e~f~i~~ah--~~~~~~~f~vk~-----~~~~ig~~~~p~~~~---- 97 (758)
T PLN02352 36 KATYVTIKIGNK----KVAKT---SHEYDRVWNQTFQILCAH--PLDSTITITLKT-----KCSILGRFHIQAHQI---- 97 (758)
T ss_pred CCceEEEEeCCc----EEecC---CCCCCCccccceeEEeee--ecCCcEEEEEec-----CCeEEEEEEEEHHHh----
Confidence 589999998543 46677 555699999988776532 222479999987 368999999998743
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (194)
+.. +..+++||+|... +.+|..+ ..+.+++.|.|.
T Consensus 98 ------~~g-~~~~~~~~~~~~~--~~~p~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 98 ------VTE-ASFINGFFPLIME--NGKPNPE-LKLRFMLWFRPA 132 (758)
T ss_pred ------hCC-CcccceEEEcccC--CCCCCCC-CEEEEEEEEEEh
Confidence 321 2338999999884 4667766 788888888765
No 131
>PLN02223 phosphoinositide phospholipase C
Probab=98.20 E-value=4.1e-06 Score=71.70 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=52.5
Q ss_pred eeEEEeeccCCCCCC-----CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCC-C-ceeEEEEE
Q psy6105 7 RSFRADNYCRPTIGN-----RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-N-PYVKVYLV 78 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~-----~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~-d-pyv~v~l~ 78 (194)
+.+.+++++++.++. .+.....||||+|.+.+......+++|.+..++.||+|||+|.|.+.. + .++++.+.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 568899999998741 123456899999999864334456778888899999999999998762 2 24555554
No 132
>KOG2060|consensus
Probab=98.19 E-value=1.2e-06 Score=70.96 Aligned_cols=93 Identities=32% Similarity=0.527 Sum_probs=77.4
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEe-cCCCCCCceeEEEEeCCCCCCcc
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVID-YDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d-~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
++|||+|+++.++....+.+|+...+|++|.|-+...|+-++. ...|.++||- +..+..+.|+|.+++-++++.
T Consensus 291 ~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~---~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~-- 365 (405)
T KOG2060|consen 291 PAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP---GKYLQGTVWGDYGRMDHKSFMGVAQIMLDELN-- 365 (405)
T ss_pred cCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC---ccEEEEEEeccccccchHHHhhHHHHHhhhhc--
Confidence 7899999999999989999999999999999999999876553 3589999985 777788899999999988653
Q ss_pred hhhHHHHhhCCCCceEeEEEccCCCCCC
Q psy6105 148 RDHWLEMLDNPRQPVTQWYPLMETVPGQ 175 (194)
Q Consensus 148 ~~~W~~~l~~p~~~~~~W~~L~~~~~~~ 175 (194)
.-..++..||+|.+..+-.
T Consensus 366 ---------ls~~~~igwyKlfgsssl~ 384 (405)
T KOG2060|consen 366 ---------LSSSPVIGWYKLFGSSSLV 384 (405)
T ss_pred ---------cccccceeeeeccCCccCC
Confidence 2244789999999875433
No 133
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.01 E-value=1.3e-05 Score=57.00 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCC--CcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCC
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLN--PFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSS 142 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~n--P~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~ 142 (194)
+|+||++.+.+. ...+++|.+..+++| |.||++|.|++.........+.+..++....+..+.+....+.+.
T Consensus 25 sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lq 98 (133)
T cd08374 25 SDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQ 98 (133)
T ss_pred cCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEE
Confidence 799999999764 346899999999999 999999999976654433233333333222233345555555443
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=97.98 E-value=9.6e-05 Score=64.55 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=52.6
Q ss_pred ceeEEEeeccCCCCCCC------CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCC--ceeEEEE
Q psy6105 6 SRSFRADNYCRPTIGNR------SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN--PYVKVYL 77 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~------d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~d--pyv~v~l 77 (194)
...+.++++++..++.. |.....||||+|.+.+......+.+|+++.++.||+|||+|.|.+... .++++.+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35788999999887421 112345999999998643345577999999999999999999986632 3455544
Q ss_pred E
Q psy6105 78 V 78 (194)
Q Consensus 78 ~ 78 (194)
.
T Consensus 549 ~ 549 (599)
T PLN02952 549 R 549 (599)
T ss_pred E
Confidence 4
No 135
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=97.88 E-value=8.4e-06 Score=56.66 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=25.3
Q ss_pred eeEEecCCCCceeeeeEEEecC----CCceeEEEEE
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVP----ANPYVKVYLV 78 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~----~dpyv~v~l~ 78 (194)
+|+++++|+||+|||+|.|.++ .+.-+.+.+.
T Consensus 50 kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 50 QTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4899999999999999999988 3334555554
No 136
>PLN02230 phosphoinositide phospholipase C 4
Probab=97.87 E-value=2.6e-05 Score=67.99 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=52.1
Q ss_pred eeEEEeeccCCCCCCC------CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCC-C-ceeEEEEE
Q psy6105 7 RSFRADNYCRPTIGNR------SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-N-PYVKVYLV 78 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~------d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~-d-pyv~v~l~ 78 (194)
..+.++++++.+++.. +.....||||+|.+.+......+++|++..++.||+|||+|.|.+.. + .++++.+.
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5788999999976421 22345799999999864333456788999999999999999998652 2 34555443
No 137
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.86 E-value=1.1e-05 Score=56.36 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.0
Q ss_pred eeEEecCCCCceeeeeEEEecC
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+|+++.+|+||+|||+|.|.+.
T Consensus 41 kTkv~~~tlnPvwNE~f~F~v~ 62 (120)
T cd08395 41 ATKSKNNNWSPKYNETFQFILG 62 (120)
T ss_pred eeEEecCCCCCccCcEEEEEee
Confidence 4788899999999999999987
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=97.82 E-value=7.9e-05 Score=64.86 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=50.7
Q ss_pred eeEEEeeccCCCCC---C---CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCC--ceeEEEE
Q psy6105 7 RSFRADNYCRPTIG---N---RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN--PYVKVYL 77 (194)
Q Consensus 7 ~~~r~~~~~a~~l~---~---~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~d--pyv~v~l 77 (194)
..+++.++++.+++ + .+.....||||+|.+.+......+++|+++.++.||+|||+|.|.+..- .++++.+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 46889999998642 1 1223467999999997533344567899999999999999999986522 3444444
No 139
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=97.82 E-value=3.8e-05 Score=52.58 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=31.1
Q ss_pred CCceeEEEEEcCC-eEeEEeeceeecCCCCCcccceEEEEe
Q psy6105 69 ANPYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDV 108 (194)
Q Consensus 69 ~dpyv~v~l~~~~-~~~~~~kT~~~~~t~nP~~~e~f~f~v 108 (194)
+|||+++++.+.. .....++|++++++.||+|| +|.|.+
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~ 60 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL 60 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH
Confidence 7999999987543 44567999999999999999 555543
No 140
>KOG0905|consensus
Probab=97.80 E-value=1.1e-05 Score=73.52 Aligned_cols=58 Identities=28% Similarity=0.447 Sum_probs=51.6
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEe
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 66 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~ 66 (194)
+-+=+..|++|+-..-+..+||||+.+|.|+.++..++||+++++|.||.|||+..|.
T Consensus 1526 LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~ 1583 (1639)
T KOG0905|consen 1526 LTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD 1583 (1639)
T ss_pred EEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec
Confidence 4566788999966665778999999999999888889999999999999999999987
No 141
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=97.74 E-value=5.7e-05 Score=52.46 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=24.9
Q ss_pred eEEecCCCCceeeeeEEEecCCCceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPANPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~ 79 (194)
|+++++|+||+|||.|.|.+...-...+.+.+
T Consensus 35 Tk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d 66 (118)
T cd08686 35 TRVCRDTTEPNWNEEFEIELEGSQTLRILCYE 66 (118)
T ss_pred eeeecCCCCCccceEEEEEeCCCCEEEEEEEE
Confidence 67899999999999999998754455555543
No 142
>PLN02228 Phosphoinositide phospholipase C
Probab=97.66 E-value=0.00017 Score=62.61 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=51.0
Q ss_pred eeEEEeeccCCCCC---CC---CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCcee-eeeEEEecCCC--ceeEEEE
Q psy6105 7 RSFRADNYCRPTIG---NR---SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFY-NEALLFDVPAN--PYVKVYL 77 (194)
Q Consensus 7 ~~~r~~~~~a~~l~---~~---d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w-~e~f~f~~~~d--pyv~v~l 77 (194)
..+++++++++.|+ .. +.....||||+|.+.+......+.+|++++++.||+| ||.|.|.+... .++++.+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 46889999999873 12 2233579999999975433445679999999999999 99999986522 3444444
No 143
>KOG0169|consensus
Probab=97.58 E-value=0.00033 Score=61.78 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=52.7
Q ss_pred eeEEEeeccCCCC-CCCCCC---CCCCcEEEEEEEcCCeEeEEEeeE-EecCCCCceeeeeEEEecCCCceeEEEE
Q psy6105 7 RSFRADNYCRPTI-GNRSIP---SVADPYVKVYLVCEGKRIRKKRTS-VKKNSLNPFYNEALLFDVPANPYVKVYL 77 (194)
Q Consensus 7 ~~~r~~~~~a~~l-~~~d~~---g~~dpyv~v~l~~~~~~~~~~~T~-~~~~t~nP~w~e~f~f~~~~dpyv~v~l 77 (194)
..|.++++.+++. +..+.+ ..+||||.|.+.+........+|+ +..++.||.|+|+|+|.+...-++-|++
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF 691 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRF 691 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEE
Confidence 3699999999954 444433 468999999987655566678899 7778899999999999987433333333
No 144
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=97.57 E-value=0.00011 Score=52.68 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=40.9
Q ss_pred eEEEeeccCCCC---CCCCCCCCCCcEEEEEE-EcCCeEeEEEeeEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105 8 SFRADNYCRPTI---GNRSIPSVADPYVKVYL-VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC 79 (194)
Q Consensus 8 ~~r~~~~~a~~l---~~~d~~g~~dpyv~v~l-~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~ 79 (194)
-++|++|...+. ...|. -.--++.-.- .-. +++|+++++++||+|||.|.|.++. +..+.+.+.+
T Consensus 21 V~karnL~~~d~~~~~~~Dp--YVKv~l~~~~~k~~-----kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 21 VIKAKNLHSDQLKLLLGIDV--SVKVTLKHQNAKLK-----KKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred EEEecCCCccccCCCCCCCe--EEEEEEEcCCcccc-----eeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 467888888762 22342 1112222110 113 6889999999999999999999883 4445555543
No 145
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=97.52 E-value=0.00011 Score=52.62 Aligned_cols=34 Identities=41% Similarity=0.739 Sum_probs=26.9
Q ss_pred EeeEEecCCCCceeeeeEEEecC----CCceeEEEEEc
Q psy6105 46 KRTSVKKNSLNPFYNEALLFDVP----ANPYVKVYLVC 79 (194)
Q Consensus 46 ~~T~~~~~t~nP~w~e~f~f~~~----~dpyv~v~l~~ 79 (194)
++|+++++|+||+|||+|.|.++ .+.-+++.+.+
T Consensus 54 ~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 54 KKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred cCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 46899999999999999999987 34445665543
No 146
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.50 E-value=0.00046 Score=50.61 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCceeEEEEEcCCeEe-EEeeceeecCCCCCcccceEEEEecCCCCC-CceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105 69 ANPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVPASNVN-DVSLIIKVIDYDRIGSDELMGCTAIGSSFI 144 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 144 (194)
++.||.+.+..++..+ ....|..+..+..+.|||.+.|++...++. ++.|.|+||+.+..+....||.+.++|-..
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 6789999887665432 234566666667789999999998777663 578999999977656678999999999764
No 147
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=97.50 E-value=5.9e-05 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.910 Sum_probs=20.0
Q ss_pred eeEEecCCCCceeeeeEEEecC
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+|+++++|+||+|||+|.|.+.
T Consensus 70 KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 70 KTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred eceecCCCCCCccCCeEEEEEc
Confidence 4789999999999999999875
No 148
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=97.48 E-value=0.00051 Score=47.68 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=24.3
Q ss_pred eEEecCCCCceeeeeEEEecCC--CceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA--NPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~~ 79 (194)
|+++++++||.|||.|.|.+.. +..+++.+.+
T Consensus 39 T~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d 72 (119)
T cd04036 39 TKTIKNSINPVWNETFEFRIQSQVKNVLELTVMD 72 (119)
T ss_pred cceecCCCCCccceEEEEEeCcccCCEEEEEEEE
Confidence 6788899999999999998763 3345555544
No 149
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=97.39 E-value=9.9e-05 Score=51.92 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=26.9
Q ss_pred EEeeEEecCCCCceeeeeEEEecC----CCceeEEEEE
Q psy6105 45 KKRTSVKKNSLNPFYNEALLFDVP----ANPYVKVYLV 78 (194)
Q Consensus 45 ~~~T~~~~~t~nP~w~e~f~f~~~----~dpyv~v~l~ 78 (194)
+++|+++++++||+|||+|.|.++ .+--+.+++.
T Consensus 53 ~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 53 LFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred eEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 568999999999999999999987 3344555544
No 150
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=97.36 E-value=0.00013 Score=51.31 Aligned_cols=31 Identities=32% Similarity=0.595 Sum_probs=23.0
Q ss_pred eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV 78 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~ 78 (194)
|+++++++||.|||+|.|.++. +-.+.+.+.
T Consensus 57 T~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 57 TSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred eeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 4678899999999999999872 334455544
No 151
>PLN02964 phosphatidylserine decarboxylase
Probab=97.36 E-value=0.00042 Score=61.21 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=59.6
Q ss_pred CceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC-cch
Q psy6105 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG-IGR 148 (194)
Q Consensus 70 dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~-~~~ 148 (194)
|+|..+...+. +..+|...++|.||+||+.-.|.+.+.+.. ...+.|||.+.++.++++|.+.+++..+. .+.
T Consensus 69 ~~~~~~~~~g~----~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 69 DKWLACVSFGE----QTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFETNRLSKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred CcEEEEEEecc----eeeeeccccccCCcccchhhceEeccCCcc--eEEEEEEecCCCCHHHhhhheeecHhhccHHHH
Confidence 56554433333 489999999999999999999988776654 46999999999999999999999886643 334
Q ss_pred hhHH
Q psy6105 149 DHWL 152 (194)
Q Consensus 149 ~~W~ 152 (194)
+++.
T Consensus 143 ~elk 146 (644)
T PLN02964 143 ESAC 146 (644)
T ss_pred HHHH
Confidence 4443
No 152
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=97.36 E-value=0.00012 Score=51.68 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=24.6
Q ss_pred eeEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV 78 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~ 78 (194)
+|+++++++||+|||+|.|.++. +-.+.+.+.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 57899999999999999999872 234444443
No 153
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=97.33 E-value=9.5e-05 Score=51.79 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=25.0
Q ss_pred eeEEecCCCCceeeeeEEEec-C----CCceeEEEEEc
Q psy6105 47 RTSVKKNSLNPFYNEALLFDV-P----ANPYVKVYLVC 79 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~-~----~dpyv~v~l~~ 79 (194)
+|+++++++||.|||+|.|.+ + .+..+.+.+.+
T Consensus 52 kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 52 KTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred eCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 478899999999999999986 3 23455555543
No 154
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=97.31 E-value=0.00011 Score=51.67 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=34.1
Q ss_pred eeEEEeeccCCCCC--CCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 7 RSFRADNYCRPTIG--NRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 7 ~~~r~~~~~a~~l~--~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
..++|++|.+.+.. ..| --.--|+.- -....... +|+++++|+||+|||+|.|.+.
T Consensus 20 ~vi~a~~L~~~d~~~g~~d--pyVkv~l~p-~~~~~~~~---kT~v~~~t~nP~~nE~f~f~v~ 77 (125)
T cd08393 20 HVIQCQDLAAADPKKQRSD--PYVKTYLLP-DKSNRGKR---KTSVKKKTLNPVFNETLRYKVE 77 (125)
T ss_pred EEEEeCCCCCcCCCCCCCC--cEEEEEEEc-CCCccccc---cCccCcCCCCCccCceEEEECC
Confidence 35788888887753 223 112122210 00000112 5899999999999999999986
No 155
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=97.29 E-value=0.00016 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.4
Q ss_pred EEeeEEecCCC-CceeeeeEEEecCC
Q psy6105 45 KKRTSVKKNSL-NPFYNEALLFDVPA 69 (194)
Q Consensus 45 ~~~T~~~~~t~-nP~w~e~f~f~~~~ 69 (194)
++||+++++|+ ||+|||+|.|+++.
T Consensus 52 KkKT~v~k~t~~~P~fNEsF~Fdv~~ 77 (135)
T cd08692 52 KKKTRLVKSSNGQVKWGETMIFPVTQ 77 (135)
T ss_pred eecCccEECCCCCceecceEEEeCCc
Confidence 68899999996 69999999999883
No 156
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=97.26 E-value=0.00016 Score=52.80 Aligned_cols=6 Identities=50% Similarity=0.617 Sum_probs=2.4
Q ss_pred eEEEEE
Q psy6105 117 SLIIKV 122 (194)
Q Consensus 117 ~l~i~V 122 (194)
.|++.|
T Consensus 129 ~l~v~i 134 (155)
T cd08690 129 KLEVKV 134 (155)
T ss_pred EEEEEE
Confidence 344444
No 157
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=97.24 E-value=0.00024 Score=49.61 Aligned_cols=19 Identities=21% Similarity=0.712 Sum_probs=12.8
Q ss_pred eeeeEEEecCCC-ceeEEEE
Q psy6105 59 YNEALLFDVPAN-PYVKVYL 77 (194)
Q Consensus 59 w~e~f~f~~~~d-pyv~v~l 77 (194)
|||.|.|.+..+ -.+.+.+
T Consensus 49 WnE~F~f~v~~~~~~l~~~v 68 (121)
T cd08401 49 FGEDFYFEIPRTFRHLSFYI 68 (121)
T ss_pred cCCeEEEEcCCCCCEEEEEE
Confidence 999999998732 3344443
No 158
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=97.23 E-value=0.0002 Score=49.89 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.1
Q ss_pred eeEEecCCCCceeeeeEEEecC
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+|+++++|+||.|||+|.|.+.
T Consensus 51 kT~v~~~t~~P~~nE~F~f~v~ 72 (119)
T cd08685 51 KTSTVPDSANPLFHETFSFDVN 72 (119)
T ss_pred eCccccCCCCCccccEEEEEcC
Confidence 5788999999999999999976
No 159
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=97.18 E-value=0.0003 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=22.6
Q ss_pred EEeeEEecCCCCceeeeeEEEecC
Q psy6105 45 KKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 45 ~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+++|+++++++||+|||+|.|.++
T Consensus 54 ~~kT~v~~~t~nPvfnEtF~f~i~ 77 (138)
T cd08408 54 KSKTSIRRGQPDPEFKETFVFQVA 77 (138)
T ss_pred eccceeecCCCCCcEeeeEEEECC
Confidence 579999999999999999999987
No 160
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=97.17 E-value=0.00033 Score=50.03 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=25.6
Q ss_pred EeeEEecCCCCceeeeeEEEecCCC----ceeEEEEE
Q psy6105 46 KRTSVKKNSLNPFYNEALLFDVPAN----PYVKVYLV 78 (194)
Q Consensus 46 ~~T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~ 78 (194)
++|+++++++||.|||.|.|.++.+ ..+.+.+.
T Consensus 53 ~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 53 KKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred eecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 3788999999999999999998732 34555554
No 161
>PLN02270 phospholipase D alpha
Probab=97.15 E-value=0.001 Score=59.71 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=44.3
Q ss_pred EEEeeccCCCCCCCC------------------CCCCCCcEEEEEEEcCCeEeEEEeeEEecCC-CCceeeeeEEEecC
Q psy6105 9 FRADNYCRPTIGNRS------------------IPSVADPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVP 68 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d------------------~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~~~ 68 (194)
|-+.+..|++|+.+| ..+.+||||.|.+... ...+|.++.+. .||.|+|.|...+.
T Consensus 10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a----~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA----RVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc----EEEEEeecCCCCCCCccccceEEeec
Confidence 557778888887632 1357899999999864 57899999885 69999999988765
No 162
>KOG1030|consensus
Probab=97.14 E-value=0.00075 Score=49.32 Aligned_cols=56 Identities=29% Similarity=0.331 Sum_probs=34.1
Q ss_pred eEEEeeccCCCC-CCCCC-----CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-CCceeEEEEEc
Q psy6105 8 SFRADNYCRPTI-GNRSI-----PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-ANPYVKVYLVC 79 (194)
Q Consensus 8 ~~r~~~~~a~~l-~~~d~-----~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-~dpyv~v~l~~ 79 (194)
-.|+.+|.++|. ...|- -|... .+-..... ++||+|||.|+|.+. ++.-+++.+.+
T Consensus 12 v~~g~~L~~rD~~~sSDPyVVl~lg~q~--lkT~~v~~--------------n~NPeWNe~ltf~v~d~~~~lkv~VyD 74 (168)
T KOG1030|consen 12 VKRGKNLAIRDFLGSSDPYVVLELGNQK--LKTRVVYK--------------NLNPEWNEELTFTVKDPNTPLKVTVYD 74 (168)
T ss_pred EEeecCeeeeccccCCCCeEEEEECCee--eeeeeecC--------------CCCCcccceEEEEecCCCceEEEEEEe
Confidence 467888888888 55452 11111 22222222 689999999999987 44445555543
No 163
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=97.14 E-value=0.00033 Score=49.16 Aligned_cols=11 Identities=9% Similarity=-0.043 Sum_probs=5.4
Q ss_pred EEEeeccCCCC
Q psy6105 9 FRADNYCRPTI 19 (194)
Q Consensus 9 ~r~~~~~a~~l 19 (194)
++|++|.+.+.
T Consensus 6 ~~A~~L~~~d~ 16 (126)
T cd08682 6 LQARGLLCKGK 16 (126)
T ss_pred EECcCCcCCCC
Confidence 45555555443
No 164
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=97.02 E-value=0.00044 Score=48.45 Aligned_cols=21 Identities=52% Similarity=0.855 Sum_probs=19.0
Q ss_pred eEEecCCCCceeeeeEEEecC
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~ 68 (194)
|+++++++||.|||+|.|.+.
T Consensus 57 T~v~~~~~nP~wne~f~f~i~ 77 (127)
T cd04030 57 TSVKKDNLNPVFDETFEFPVS 77 (127)
T ss_pred cccccCCCCCEECeEEEEecC
Confidence 578889999999999999976
No 165
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=97.02 E-value=0.0014 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=28.4
Q ss_pred EEEeeEEecCCCCcee-eeeEEEecCCCceeEEEEE
Q psy6105 44 RKKRTSVKKNSLNPFY-NEALLFDVPANPYVKVYLV 78 (194)
Q Consensus 44 ~~~~T~~~~~t~nP~w-~e~f~f~~~~dpyv~v~l~ 78 (194)
.+.+|.++++|+||+| ||.|.|.+..+-.+.+.+.
T Consensus 45 ~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~ 80 (137)
T cd08691 45 QECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVK 80 (137)
T ss_pred ceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEE
Confidence 4789999999999999 9999998864445555554
No 166
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=97.01 E-value=0.00042 Score=49.33 Aligned_cols=23 Identities=48% Similarity=0.986 Sum_probs=21.0
Q ss_pred EeeEEecCCCCceeeeeEEEecC
Q psy6105 46 KRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 46 ~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
++|+++++|+||.|||+|.|.++
T Consensus 53 ~kT~v~~~t~nP~wnE~F~f~i~ 75 (135)
T cd08410 53 KKTSCMRGTIDPFYNESFSFKVP 75 (135)
T ss_pred EcCccccCCCCCccceeEEEeCC
Confidence 55889999999999999999986
No 167
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=97.01 E-value=0.00051 Score=48.50 Aligned_cols=12 Identities=0% Similarity=-0.186 Sum_probs=6.2
Q ss_pred eEEEeeccCCCC
Q psy6105 8 SFRADNYCRPTI 19 (194)
Q Consensus 8 ~~r~~~~~a~~l 19 (194)
.++|++|.+.+.
T Consensus 22 Vi~a~~L~~~~~ 33 (128)
T cd08388 22 IIECRDLPAMDE 33 (128)
T ss_pred EEEeECCCCCCC
Confidence 345556655443
No 168
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=96.99 E-value=0.001 Score=46.18 Aligned_cols=21 Identities=38% Similarity=0.437 Sum_probs=18.5
Q ss_pred eEEecCCCCceeeeeEEEecC
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~ 68 (194)
|.++++++||+|||.|.|.+.
T Consensus 43 T~vi~~t~nP~wne~f~f~~~ 63 (120)
T cd04048 43 TEVIKNNLNPDFVTTFTVDYY 63 (120)
T ss_pred EeEeCCCCCCCceEEEEEEEE
Confidence 678899999999999999754
No 169
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.99 E-value=0.0056 Score=43.95 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=54.6
Q ss_pred CceeEEEEEcCCeEeE--EeeceeecCC-CCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCC----ceeEEEEeCC
Q psy6105 70 NPYVKVYLVCEGKRIR--KKRTSVKKNS-LNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSD----ELMGCTAIGS 141 (194)
Q Consensus 70 dpyv~v~l~~~~~~~~--~~kT~~~~~t-~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~----~~iG~~~i~l 141 (194)
+.||.+.+..++..+. ...|.....+ ..+.|+|.+.|++...++ .++.|.|+||..+..... ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 4578888876666555 3367766666 799999999999766555 357899999996655444 7999999999
Q ss_pred CCC
Q psy6105 142 SFI 144 (194)
Q Consensus 142 ~~~ 144 (194)
-..
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 764
No 170
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=96.96 E-value=0.0011 Score=46.35 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=22.4
Q ss_pred ecCCCCceeeeeEEEecC--CCceeEEEEEcC
Q psy6105 51 KKNSLNPFYNEALLFDVP--ANPYVKVYLVCE 80 (194)
Q Consensus 51 ~~~t~nP~w~e~f~f~~~--~dpyv~v~l~~~ 80 (194)
+++|+||.|||.|.|.+. .+..+.+.+.+.
T Consensus 35 ~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~ 66 (121)
T cd08378 35 IERTSNPEWNQVFAFSKDRLQGSTLEVSVWDK 66 (121)
T ss_pred cCCCCCCccceEEEEEcCCCcCCEEEEEEEeC
Confidence 467899999999999876 345666666543
No 171
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.96 E-value=0.0026 Score=46.45 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=52.8
Q ss_pred CCceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCC--CCceeEEEEeCCCCC
Q psy6105 69 ANPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG--SDELMGCTAIGSSFI 144 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~--~~~~iG~~~i~l~~~ 144 (194)
.+.||.+.+..+++... ...|.......++.|||.+.|++...++ .++.|.|+||+.+..+ ....||.+.++|-..
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 35677777775554322 3344433334679999999998766555 3578999999966543 467999999999764
No 172
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=96.93 E-value=0.00038 Score=49.39 Aligned_cols=24 Identities=42% Similarity=0.818 Sum_probs=22.3
Q ss_pred EEeeEEecCCCCceeeeeEEEecC
Q psy6105 45 KKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 45 ~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+.+|+++++|+||+|||.|.|.+.
T Consensus 56 ~~kT~v~~~t~nP~wnE~f~f~i~ 79 (133)
T cd04009 56 TPKTQVKKKTLFPLFDESFEFNVP 79 (133)
T ss_pred ccccccCcCCCCCccCCEEEEEec
Confidence 588999999999999999999976
No 173
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=96.91 E-value=0.0016 Score=45.58 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=25.1
Q ss_pred eEEecCCCCceeeeeEEEecCCCceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPANPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~ 79 (194)
|.++++++||.|||.|.|.+..+.-+.+.+.+
T Consensus 37 T~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d 68 (123)
T cd08382 37 TDVAKKTLDPKWNEHFDLTVGPSSIITIQVFD 68 (123)
T ss_pred ccEEcCCCCCcccceEEEEeCCCCEEEEEEEE
Confidence 56778899999999999998765555655543
No 174
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=96.90 E-value=0.00068 Score=46.41 Aligned_cols=12 Identities=50% Similarity=0.899 Sum_probs=10.7
Q ss_pred ceeeeeEEEecC
Q psy6105 57 PFYNEALLFDVP 68 (194)
Q Consensus 57 P~w~e~f~f~~~ 68 (194)
|+|||.|.|.+.
T Consensus 50 PvWne~f~f~v~ 61 (108)
T cd04039 50 PVFNERLAFEVY 61 (108)
T ss_pred CcccceEEEEEe
Confidence 999999999864
No 175
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.90 E-value=0.00078 Score=46.20 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=10.7
Q ss_pred ceeeeeEEEecC
Q psy6105 57 PFYNEALLFDVP 68 (194)
Q Consensus 57 P~w~e~f~f~~~ 68 (194)
|.|||.|.|.+.
T Consensus 50 P~Wne~f~f~~~ 61 (111)
T cd04041 50 PVWEETWFVLVT 61 (111)
T ss_pred CccceeEEEEeC
Confidence 999999999765
No 176
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.87 E-value=0.0024 Score=45.01 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=25.8
Q ss_pred EEeeEEecCCCCceeeeeEEEecCC-CceeEEEEE
Q psy6105 45 KKRTSVKKNSLNPFYNEALLFDVPA-NPYVKVYLV 78 (194)
Q Consensus 45 ~~~T~~~~~t~nP~w~e~f~f~~~~-dpyv~v~l~ 78 (194)
..+|.++++|+||.|||+|.|.+.. +..+.+.+.
T Consensus 40 ~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~ 74 (133)
T cd04033 40 SVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVF 74 (133)
T ss_pred ceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEE
Confidence 4688999999999999999998763 333444443
No 177
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=96.87 E-value=0.002 Score=45.04 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=23.6
Q ss_pred eEEecCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA--NPYVKVYLV 78 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~ 78 (194)
|+++++++||.|||.|.|.+.. +..+.+.+.
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~ 72 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVW 72 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEE
Confidence 5677889999999999999874 345555554
No 178
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.87 E-value=0.00068 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.933 Sum_probs=18.8
Q ss_pred eEEecCCCCceeeeeEEEecC
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~ 68 (194)
|+++++++||.|||+|.|.+.
T Consensus 55 T~v~~~t~~P~wne~f~f~v~ 75 (124)
T cd08387 55 SKIHKKTLNPEFDESFVFEVP 75 (124)
T ss_pred CceEcCCCCCCcccEEEEeCC
Confidence 567888999999999999977
No 179
>KOG3837|consensus
Probab=96.86 E-value=0.00091 Score=55.33 Aligned_cols=106 Identities=16% Similarity=0.270 Sum_probs=72.9
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCC---------CCCceEEEEEEecCC-CCCCceeEEEE
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASN---------VNDVSLIIKVIDYDR-IGSDELMGCTA 138 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~---------l~~~~l~i~V~d~~~-~~~~~~iG~~~ 138 (194)
.|.|+++.+.-....-.+.+|.+++.+.+|.|+|.|..++.... +.+..+.|+|+++.. +.+|.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 46788888863333445788999999999999999998875521 123478999999765 47899999999
Q ss_pred eCCCCCCcchhhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeee
Q psy6105 139 IGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLS 189 (194)
Q Consensus 139 i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~ 189 (194)
|.|.-+. + .-.++..++| ..|.++.-|-.++.|+|.
T Consensus 468 ikle~Le-----------n-~cei~e~~~l---~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILE-----------N-MCEICEYLPL---KDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhh-----------c-ccchhhceec---cccccccCCeeEEEEEEe
Confidence 9986432 2 2233444444 445555556666666554
No 180
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=96.83 E-value=0.00071 Score=47.86 Aligned_cols=31 Identities=32% Similarity=0.603 Sum_probs=23.3
Q ss_pred eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV 78 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~ 78 (194)
|+++++++||.|||+|.|.+.. +..+.+.+.
T Consensus 54 T~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 54 TQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred eeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 5678899999999999999873 234555554
No 181
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=96.82 E-value=0.0019 Score=41.95 Aligned_cols=11 Identities=55% Similarity=0.773 Sum_probs=8.9
Q ss_pred CCceeEEEEEc
Q psy6105 69 ANPYVKVYLVC 79 (194)
Q Consensus 69 ~dpyv~v~l~~ 79 (194)
.++|+.+.+.+
T Consensus 20 ~~~~v~v~~~~ 30 (102)
T cd00030 20 SDPYVKVSLGG 30 (102)
T ss_pred CCcEEEEEecc
Confidence 68999999864
No 182
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.79 E-value=0.0025 Score=44.98 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.1
Q ss_pred CCceeeeeEEEecCCCceeEEEEE
Q psy6105 55 LNPFYNEALLFDVPANPYVKVYLV 78 (194)
Q Consensus 55 ~nP~w~e~f~f~~~~dpyv~v~l~ 78 (194)
+||.|||+|.|.+..+..+.+.+.
T Consensus 58 ~~P~Wne~f~~~v~~~~~l~~~v~ 81 (132)
T cd04014 58 NSPVWNEEFTTEVHNGRNLELTVF 81 (132)
T ss_pred CCCCcceeEEEEcCCCCEEEEEEE
Confidence 799999999999875545555543
No 183
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=96.79 E-value=0.00077 Score=46.85 Aligned_cols=21 Identities=52% Similarity=0.857 Sum_probs=18.5
Q ss_pred eEEecCCCCceeeeeEEEecC
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~ 68 (194)
|+++++++||.|||+|.|.+.
T Consensus 56 T~v~~~t~~P~wne~f~f~i~ 76 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHIS 76 (123)
T ss_pred ccccCCCCCCcccceEEEeCC
Confidence 456788999999999999977
No 184
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=96.78 E-value=0.00091 Score=47.57 Aligned_cols=22 Identities=55% Similarity=1.056 Sum_probs=19.5
Q ss_pred eeEEecCCCCceeeeeEEEecC
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+|.++++|+||.|||+|.|.++
T Consensus 55 kT~v~k~t~nP~w~e~F~f~v~ 76 (136)
T cd08404 55 KTHVKKCTLNPVFNESFVFDIP 76 (136)
T ss_pred cCccccCCCCCccCceEEEECC
Confidence 3678889999999999999987
No 185
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.77 E-value=0.0011 Score=46.02 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=19.0
Q ss_pred eEEecCCCCceeeeeEEEecC
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~ 68 (194)
|+++++++||.|||.|.|.++
T Consensus 54 T~v~~~~~~P~wne~f~f~i~ 74 (123)
T cd08390 54 SKVKRKTQNPNFDETFVFQVS 74 (123)
T ss_pred eeeEcCCCCCccceEEEEEcC
Confidence 578889999999999999977
No 186
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.76 E-value=0.0009 Score=46.68 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=23.4
Q ss_pred eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV 78 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~ 78 (194)
|+++++++||.|||.|.|.+.. +-.+.+.+.
T Consensus 55 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 55 TKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred cccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 5677899999999999999762 334555554
No 187
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=96.70 E-value=0.0013 Score=46.08 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=12.6
Q ss_pred CceeeeeEEEecCC
Q psy6105 56 NPFYNEALLFDVPA 69 (194)
Q Consensus 56 nP~w~e~f~f~~~~ 69 (194)
||+|||+|.|.+..
T Consensus 46 nP~WNe~F~f~v~~ 59 (121)
T cd04016 46 NPRWNKTIQCTLPE 59 (121)
T ss_pred CCccCeEEEEEecC
Confidence 89999999999863
No 188
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.69 E-value=0.00092 Score=45.33 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=20.0
Q ss_pred ecCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105 51 KKNSLNPFYNEALLFDVPA--NPYVKVYLV 78 (194)
Q Consensus 51 ~~~t~nP~w~e~f~f~~~~--dpyv~v~l~ 78 (194)
+++|.||.|||.|.|.+.. ...+.+.+.
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~ 68 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVK 68 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEE
Confidence 3568999999999999873 234455544
No 189
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=96.68 E-value=0.0035 Score=43.93 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=15.4
Q ss_pred eeeeeEEEecCCCceeEEEEEc
Q psy6105 58 FYNEALLFDVPANPYVKVYLVC 79 (194)
Q Consensus 58 ~w~e~f~f~~~~dpyv~v~l~~ 79 (194)
.|||.|.|.+.....+.+.+.+
T Consensus 48 ~Wne~f~~~~~~~~~l~~~V~d 69 (125)
T cd04021 48 KWNEHFTVLVTPQSTLEFKVWS 69 (125)
T ss_pred ccccEEEEEeCCCCEEEEEEEe
Confidence 6999999987755555555543
No 190
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.67 E-value=0.00077 Score=47.01 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.4
Q ss_pred eEEecCCCCceeeeeEEEecC
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~ 68 (194)
|+++++|+||.|||+|.|.+.
T Consensus 57 T~v~~~t~nP~wne~f~f~~~ 77 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNV 77 (125)
T ss_pred ccccCCCCCCccccEEEEccc
Confidence 578899999999999999853
No 191
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.65 E-value=0.001 Score=46.66 Aligned_cols=20 Identities=40% Similarity=0.733 Sum_probs=16.3
Q ss_pred eEEecCCCCceeeeeEEEe-cC
Q psy6105 48 TSVKKNSLNPFYNEALLFD-VP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~-~~ 68 (194)
|+++++ +||+|||+|.|. +.
T Consensus 55 Tkv~~~-~nP~fnE~F~f~~i~ 75 (124)
T cd08389 55 TKVQRG-PNPVFNETFTFSRVE 75 (124)
T ss_pred cccccC-CCCcccCEEEECCCC
Confidence 355666 899999999998 65
No 192
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=96.62 E-value=0.0016 Score=45.35 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=6.8
Q ss_pred eEEEeeccCCCCC
Q psy6105 8 SFRADNYCRPTIG 20 (194)
Q Consensus 8 ~~r~~~~~a~~l~ 20 (194)
-+++.++.+.+..
T Consensus 6 vi~a~~L~~~d~~ 18 (121)
T cd04054 6 IVEGKNLPAKDIT 18 (121)
T ss_pred EEEeeCCcCCCCC
Confidence 3455566555543
No 193
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.62 E-value=0.0013 Score=46.78 Aligned_cols=32 Identities=41% Similarity=0.718 Sum_probs=23.9
Q ss_pred eEEecCCCCceeeeeEEEecCCC----ceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPAN----PYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~~ 79 (194)
|+++++++||.|||.|.|.+..+ ..+.+.+.+
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 56788999999999999998622 245555553
No 194
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.62 E-value=0.012 Score=43.05 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCceeEEEEEcCCeEe-EEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCC----CCceeEEEEeCCC
Q psy6105 69 ANPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG----SDELMGCTAIGSS 142 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~----~~~~iG~~~i~l~ 142 (194)
++.||++.+..++..+ ....|..+.. .++.|||.+.|++...++ .++.|.|+||+....+ ....||.+.+.|-
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 4677887777655433 2334444443 679999999998876666 3578999999964321 2356999999987
Q ss_pred CC
Q psy6105 143 FI 144 (194)
Q Consensus 143 ~~ 144 (194)
..
T Consensus 105 d~ 106 (158)
T cd08398 105 DY 106 (158)
T ss_pred CC
Confidence 64
No 195
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.61 E-value=0.0014 Score=45.96 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=5.4
Q ss_pred EEEeeccCCCC
Q psy6105 9 FRADNYCRPTI 19 (194)
Q Consensus 9 ~r~~~~~a~~l 19 (194)
++|+++-+.+.
T Consensus 7 i~A~~L~~~d~ 17 (127)
T cd04022 7 VDAQDLMPKDG 17 (127)
T ss_pred EEeeCCCCCCC
Confidence 44555554443
No 196
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.61 E-value=0.0011 Score=47.22 Aligned_cols=33 Identities=30% Similarity=0.690 Sum_probs=24.6
Q ss_pred eeEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC 79 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~ 79 (194)
+|+++++++||.|||.|.|.++. +..+.+.+.+
T Consensus 55 kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 55 KTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred cCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 46788899999999999999762 3345555543
No 197
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=96.60 E-value=0.0017 Score=45.15 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=17.9
Q ss_pred CCceeeeeEEEecCC-CceeEEEEEc
Q psy6105 55 LNPFYNEALLFDVPA-NPYVKVYLVC 79 (194)
Q Consensus 55 ~nP~w~e~f~f~~~~-dpyv~v~l~~ 79 (194)
+||.|||.|.|.+.. +..+.+.+.+
T Consensus 44 ~nP~Wne~f~f~v~~~~~~l~~~v~D 69 (121)
T cd04042 44 LNPVWDEKFTLPIEDVTQPLYIKVFD 69 (121)
T ss_pred CCCccceeEEEEecCCCCeEEEEEEe
Confidence 799999999998752 3445555543
No 198
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=96.58 E-value=0.0017 Score=45.50 Aligned_cols=26 Identities=27% Similarity=0.568 Sum_probs=18.4
Q ss_pred CCCCceeeeeEEEecCC-CceeEEEEE
Q psy6105 53 NSLNPFYNEALLFDVPA-NPYVKVYLV 78 (194)
Q Consensus 53 ~t~nP~w~e~f~f~~~~-dpyv~v~l~ 78 (194)
+|+||.|||.|.|.+.. +--+.+.+.
T Consensus 40 ~t~nP~Wne~f~f~~~~~~~~l~~~v~ 66 (126)
T cd08678 40 NTSNPFWDEHFLFELSPNSKELLFEVY 66 (126)
T ss_pred cCCCCccCceEEEEeCCCCCEEEEEEE
Confidence 57999999999998863 223444444
No 199
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.58 E-value=0.0015 Score=47.59 Aligned_cols=68 Identities=32% Similarity=0.455 Sum_probs=52.1
Q ss_pred eeEEEeeccCCCCCC---------CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC---CCceeE
Q psy6105 7 RSFRADNYCRPTIGN---------RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP---ANPYVK 74 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~---------~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~---~dpyv~ 74 (194)
+.++|+.|.+.+.-. .+..+.+||||+|.+.+. +.+|+++++++||+|||+|.|.+. .+-.+.
T Consensus 5 ~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~-----~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 5 KIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQ-----KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred EEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCE-----eeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 467888888877543 366789999999998754 568999999999999999999854 233455
Q ss_pred EEEEc
Q psy6105 75 VYLVC 79 (194)
Q Consensus 75 v~l~~ 79 (194)
+.+.+
T Consensus 80 ~~v~D 84 (151)
T cd04018 80 IQIRD 84 (151)
T ss_pred EEEEE
Confidence 55543
No 200
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.58 E-value=0.013 Score=43.67 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=59.0
Q ss_pred CceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCC----------------CC
Q psy6105 70 NPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG----------------SD 131 (194)
Q Consensus 70 dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~----------------~~ 131 (194)
+.||++.+..++..+. ...|..+.....+.|||.+.|++...++ .++.|.|+||+..... ..
T Consensus 28 ~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (173)
T cd08693 28 KVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDD 107 (173)
T ss_pred eEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcc
Confidence 4677776665544332 3455555555679999999998877666 3578999999854321 24
Q ss_pred ceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105 132 ELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP 167 (194)
Q Consensus 132 ~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~ 167 (194)
..||.+.+.|-... ..|..-......|-.
T Consensus 108 ~~ig~~n~~LFd~~-------~~Lr~G~~~L~lW~~ 136 (173)
T cd08693 108 NPIAWVNTMVFDYK-------GQLKTGDHTLYMWTY 136 (173)
T ss_pred eEEEEEeEEEEccc-------chhhcCCeEEEecCC
Confidence 68999999887643 234343444556743
No 201
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=96.56 E-value=0.0021 Score=47.12 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=49.5
Q ss_pred eEEEeeccCCCCCCCC------------------------------CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCc
Q psy6105 8 SFRADNYCRPTIGNRS------------------------------IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNP 57 (194)
Q Consensus 8 ~~r~~~~~a~~l~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP 57 (194)
.|++.++.|++|+.+| ..|.+||||+|.+... ...+|++++++.||
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~----~~~rT~v~~~~~nP 83 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA----RVARTRVIENSENP 83 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe----EeeEEEEeCCCCCC
Confidence 4789999999999998 3567999999999753 25799999999999
Q ss_pred eeeeeEEEecC
Q psy6105 58 FYNEALLFDVP 68 (194)
Q Consensus 58 ~w~e~f~f~~~ 68 (194)
.|||.|.|.+.
T Consensus 84 ~WnE~F~~~~~ 94 (158)
T cd04015 84 VWNESFHIYCA 94 (158)
T ss_pred ccceEEEEEcc
Confidence 99999999865
No 202
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.55 E-value=0.0017 Score=45.36 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=4.6
Q ss_pred EEEeeccCCC
Q psy6105 9 FRADNYCRPT 18 (194)
Q Consensus 9 ~r~~~~~a~~ 18 (194)
++|++|...+
T Consensus 23 ~~a~~L~~~d 32 (125)
T cd08386 23 LKAVELPAKD 32 (125)
T ss_pred EEecCCCCcc
Confidence 4455554433
No 203
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=96.52 E-value=0.0017 Score=44.72 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=5.2
Q ss_pred EEEeeccCCC
Q psy6105 9 FRADNYCRPT 18 (194)
Q Consensus 9 ~r~~~~~a~~ 18 (194)
++|++|.+.+
T Consensus 7 ~~a~~L~~~~ 16 (116)
T cd08376 7 VEGKNLPPMD 16 (116)
T ss_pred EEEECCCCCC
Confidence 4555555544
No 204
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=96.50 E-value=0.0048 Score=44.54 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=7.2
Q ss_pred eEEEeeccCCCC
Q psy6105 8 SFRADNYCRPTI 19 (194)
Q Consensus 8 ~~r~~~~~a~~l 19 (194)
-+++.+|.+++.
T Consensus 8 Vi~a~nL~~~d~ 19 (145)
T cd04038 8 VVRGTNLAVRDF 19 (145)
T ss_pred EEeeECCCCCCC
Confidence 356666666555
No 205
>KOG0696|consensus
Probab=96.48 E-value=0.00071 Score=56.49 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.3
Q ss_pred EeeEEecCCCCceeeeeEEEecC
Q psy6105 46 KRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 46 ~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
++|++++.|+||+|||+|.|.+.
T Consensus 219 qKTkTik~~LNP~wNEtftf~Lk 241 (683)
T KOG0696|consen 219 QKTKTIKATLNPVWNETFTFKLK 241 (683)
T ss_pred hhhhhhhhhcCccccceeEEecc
Confidence 67999999999999999999876
No 206
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=96.46 E-value=0.0017 Score=46.03 Aligned_cols=33 Identities=58% Similarity=0.827 Sum_probs=24.0
Q ss_pred eeEEecCCCCceeeeeEEEecCCC----ceeEEEEEc
Q psy6105 47 RTSVKKNSLNPFYNEALLFDVPAN----PYVKVYLVC 79 (194)
Q Consensus 47 ~T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~~ 79 (194)
+|+++++++||.|||.|.|.+..+ ..+.+.+.+
T Consensus 54 kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 54 KTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred cCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 466788999999999999988632 234555543
No 207
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=96.44 E-value=0.0014 Score=48.18 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=23.8
Q ss_pred eEEecCCCCceeeeeEEEecC-----CCceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~~ 79 (194)
|+++++|+||.|||.|.|.+. .+..+++.+.+
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 678899999999999999742 23345665543
No 208
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=96.44 E-value=0.0022 Score=44.66 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=14.0
Q ss_pred eeeeEEEecCC--CceeEEEEEc
Q psy6105 59 YNEALLFDVPA--NPYVKVYLVC 79 (194)
Q Consensus 59 w~e~f~f~~~~--dpyv~v~l~~ 79 (194)
|||+|.|.+.. +..+.+.+.+
T Consensus 47 Wne~f~f~~~~~~~~~l~~~v~d 69 (123)
T cd04025 47 WNEVFEFELMEGADSPLSVEVWD 69 (123)
T ss_pred cCcEEEEEcCCCCCCEEEEEEEE
Confidence 89999998763 3445555543
No 209
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.42 E-value=0.044 Score=39.88 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=62.4
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCC-----------CceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHH
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVN-----------DVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLE 153 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~-----------~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~ 153 (194)
++.+|+.+..+.+|.|+|.|.|++..+... ...|.|.|..-|..+...++|.-.++ |..
T Consensus 45 QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~ 114 (156)
T PF15627_consen 45 QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLD----------WRK 114 (156)
T ss_pred ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceeh----------HHH
Confidence 388999999999999999999998765421 23677777665655555566665443 778
Q ss_pred HhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105 154 MLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN 192 (194)
Q Consensus 154 ~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~ 192 (194)
+|..+......=-.|.+...+.+-..|-.++. |+=+|
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~--lELlP 151 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLR--LELLP 151 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEEEE--EEeec
Confidence 88887654444445666555554444444443 44444
No 210
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=96.36 E-value=0.0052 Score=44.77 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=26.6
Q ss_pred EEEeeEEecCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105 44 RKKRTSVKKNSLNPFYNEALLFDVPA--NPYVKVYLV 78 (194)
Q Consensus 44 ~~~~T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~ 78 (194)
...+|.++++|+||.|||+|.|.+.. +..+.+.+.
T Consensus 89 ~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~ 125 (153)
T cd08676 89 SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIW 125 (153)
T ss_pred ccEecceecCCCCCccccEEEEEeccCCCCEEEEEEE
Confidence 36889999999999999999998752 334444443
No 211
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=96.34 E-value=0.0055 Score=42.30 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.8
Q ss_pred EEEeeccCC
Q psy6105 9 FRADNYCRP 17 (194)
Q Consensus 9 ~r~~~~~a~ 17 (194)
++|++|.+.
T Consensus 8 ~~a~~L~~~ 16 (121)
T cd08391 8 IEAQDLVAK 16 (121)
T ss_pred EEccCCccc
Confidence 344444443
No 212
>KOG1265|consensus
Probab=96.33 E-value=0.0036 Score=56.34 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=57.2
Q ss_pred CCceeEEEEEcCCe--EeEEeeceeec-CCCCCcccc-eEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105 69 ANPYVKVYLVCEGK--RIRKKRTSVKK-NSLNPFYNE-ALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSF 143 (194)
Q Consensus 69 ~dpyv~v~l~~~~~--~~~~~kT~~~~-~t~nP~~~e-~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 143 (194)
...||.|.+.+-+. ..+..+|+++. +++||+|+| .|.|. |-.+++ +.|.|.||+.+ ..+||+-.++++.
T Consensus 720 vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiavyeEg----gK~ig~RIlpvd~ 793 (1189)
T KOG1265|consen 720 VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAVYEEG----GKFIGQRILPVDG 793 (1189)
T ss_pred cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeeeeccC----Cceeeeeccchhc
Confidence 56899999975443 22456677665 689999996 58886 444555 58999999743 4699999999999
Q ss_pred CCcchhh
Q psy6105 144 IGIGRDH 150 (194)
Q Consensus 144 ~~~~~~~ 150 (194)
+..|+.|
T Consensus 794 l~~GYrh 800 (1189)
T KOG1265|consen 794 LNAGYRH 800 (1189)
T ss_pred ccCccee
Confidence 9888876
No 213
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=96.32 E-value=0.0021 Score=45.40 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=22.6
Q ss_pred eEEecCCCCceeeeeEEEec-C--CCceeEEEEE
Q psy6105 48 TSVKKNSLNPFYNEALLFDV-P--ANPYVKVYLV 78 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~-~--~dpyv~v~l~ 78 (194)
|+++++++||+|||+|.|.. . .+-.+++.+.
T Consensus 63 T~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~ 96 (127)
T cd04032 63 TEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVW 96 (127)
T ss_pred CceecCCCCCcCCCEEEEecccCCCCCEEEEEEE
Confidence 67889999999999999963 2 2345555554
No 214
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=96.28 E-value=0.0024 Score=45.59 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=18.6
Q ss_pred CCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105 53 NSLNPFYNEALLFDVPA--NPYVKVYLV 78 (194)
Q Consensus 53 ~t~nP~w~e~f~f~~~~--dpyv~v~l~ 78 (194)
+|+||.|||.|.|.+.. +..+.+.+.
T Consensus 56 ~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 83 (136)
T cd08375 56 DTLNPKWNSSMQFFVKDLEQDVLCITVF 83 (136)
T ss_pred CCCCCccCceEEEEecCccCCEEEEEEE
Confidence 57999999999998752 334455554
No 215
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=96.26 E-value=0.0031 Score=43.13 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=23.8
Q ss_pred eEEecCCCCcee-eeeEEEecCC----CceeEEEEEc
Q psy6105 48 TSVKKNSLNPFY-NEALLFDVPA----NPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w-~e~f~f~~~~----dpyv~v~l~~ 79 (194)
|+++++++||.| ||.|.|.+.. +-.+.+.+.+
T Consensus 36 T~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d 72 (110)
T cd08688 36 TDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMD 72 (110)
T ss_pred cceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEe
Confidence 467788999999 9999999873 2355555543
No 216
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=96.19 E-value=0.007 Score=42.23 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=4.6
Q ss_pred EEEeeccCCC
Q psy6105 9 FRADNYCRPT 18 (194)
Q Consensus 9 ~r~~~~~a~~ 18 (194)
++|++|.+.+
T Consensus 8 ~~a~~L~~~~ 17 (128)
T cd04024 8 VEAKDLAAKD 17 (128)
T ss_pred EEeeCCCccc
Confidence 4445554433
No 217
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.15 E-value=0.051 Score=40.31 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=37.1
Q ss_pred CCcccceEEEEecCCCC-CCceEEEEEEecCCCC---------CCceeEEEEeCCCCC
Q psy6105 97 NPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG---------SDELMGCTAIGSSFI 144 (194)
Q Consensus 97 nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~---------~~~~iG~~~i~l~~~ 144 (194)
.+.|||.+.|++...++ .++.|.|+||+....+ ....||.+.++|-..
T Consensus 62 ~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 62 RVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred cccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 46799999998766555 3578999999865443 457899999999764
No 218
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.14 E-value=0.0036 Score=43.86 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=20.4
Q ss_pred ecCCCCceeeeeEEEecC----CCceeEEEEEc
Q psy6105 51 KKNSLNPFYNEALLFDVP----ANPYVKVYLVC 79 (194)
Q Consensus 51 ~~~t~nP~w~e~f~f~~~----~dpyv~v~l~~ 79 (194)
++++.||.|||.|.|.+. .+-.+.+.+.+
T Consensus 33 ~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d 65 (127)
T cd08373 33 LENELNPVWNETFEWPLAGSPDPDESLEIVVKD 65 (127)
T ss_pred eCCCcCCcccceEEEEeCCCcCCCCEEEEEEEE
Confidence 456789999999999875 23455555543
No 219
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.13 E-value=0.023 Score=42.46 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=51.8
Q ss_pred ceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCC-CceEEEEEEecCCCC----------------CCce
Q psy6105 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVN-DVSLIIKVIDYDRIG----------------SDEL 133 (194)
Q Consensus 71 pyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~----------------~~~~ 133 (194)
.||++.+..++......+|.....+.++.|||.+.|++...++. ++.|.|+||+....+ .+..
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQL 111 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccccccccccccce
Confidence 67777666655544455666666677899999999998776663 578999999852211 2557
Q ss_pred eEEEEeCCCCC
Q psy6105 134 MGCTAIGSSFI 144 (194)
Q Consensus 134 iG~~~i~l~~~ 144 (194)
||-+.+.|-..
T Consensus 112 l~wvn~~LFD~ 122 (178)
T cd08399 112 LYYVNLLLIDH 122 (178)
T ss_pred EEEEEEEEEcC
Confidence 78888887653
No 220
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.12 E-value=0.0051 Score=43.25 Aligned_cols=32 Identities=53% Similarity=0.753 Sum_probs=23.7
Q ss_pred eEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~ 79 (194)
|++++++.||.|||+|.|.+.. ...+++.+.+
T Consensus 55 T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 55 TSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 3566788999999999999873 2456666543
No 221
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.07 E-value=0.0044 Score=43.36 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=18.2
Q ss_pred CCCCceeeeeEEEecC--CCceeEEEEE
Q psy6105 53 NSLNPFYNEALLFDVP--ANPYVKVYLV 78 (194)
Q Consensus 53 ~t~nP~w~e~f~f~~~--~dpyv~v~l~ 78 (194)
+|+||.|||.|.|.+. .+..+.+.+.
T Consensus 43 ~t~nP~Wne~f~f~~~~~~~~~L~~~V~ 70 (124)
T cd04037 43 NTLNPVFGKMFELEATLPGNSILKISVM 70 (124)
T ss_pred CCCCCccceEEEEEecCCCCCEEEEEEE
Confidence 4799999999999754 2334555554
No 222
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.04 E-value=0.0056 Score=42.42 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=15.2
Q ss_pred ceeeeeEEEecCC-CceeEEEEE
Q psy6105 57 PFYNEALLFDVPA-NPYVKVYLV 78 (194)
Q Consensus 57 P~w~e~f~f~~~~-dpyv~v~l~ 78 (194)
|.|||.|.|.+.. +-.+.+.+.
T Consensus 50 P~Wne~~~~~v~~~~~~l~~~v~ 72 (124)
T cd04044 50 PVWNETKYILVNSLTEPLNLTVY 72 (124)
T ss_pred CcceEEEEEEeCCCCCEEEEEEE
Confidence 8999999998762 334455544
No 223
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.99 E-value=0.027 Score=42.34 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=48.5
Q ss_pred eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC-C-CceeEEEEeCCCC
Q psy6105 84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG-S-DELMGCTAIGSSF 143 (194)
Q Consensus 84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~-~-~~~iG~~~i~l~~ 143 (194)
...++|.+...+.+|.|+|++-+.++.+......|.+++++...-. + ...+|.+.++|-.
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 4567888889899999999999999999988899999998843221 1 2579999999854
No 224
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=95.95 E-value=0.005 Score=42.28 Aligned_cols=15 Identities=53% Similarity=1.132 Sum_probs=13.5
Q ss_pred CCceeeeeEEEecCC
Q psy6105 55 LNPFYNEALLFDVPA 69 (194)
Q Consensus 55 ~nP~w~e~f~f~~~~ 69 (194)
+||.|||+|.|.+..
T Consensus 40 ~~P~Wne~f~f~v~~ 54 (117)
T cd08383 40 LNPFWGEEFVFDDPP 54 (117)
T ss_pred CCCcccceEEEecCC
Confidence 899999999999873
No 225
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.94 E-value=0.032 Score=45.83 Aligned_cols=91 Identities=14% Similarity=0.298 Sum_probs=64.2
Q ss_pred ceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecC-----CCCCCceEEEEEEecC-CCCCCceeEEEEeCCCCC
Q psy6105 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-----SNVNDVSLIIKVIDYD-RIGSDELMGCTAIGSSFI 144 (194)
Q Consensus 71 pyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~-----~~l~~~~l~i~V~d~~-~~~~~~~iG~~~i~l~~~ 144 (194)
.++...+.+. .-.|..+..+-.|.||..+.+++.. -.++...|+++.|..+ ..+..+.||.+.++|.+.
T Consensus 20 ~vv~a~~ng~-----~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 20 IVVEAKFNGE-----SLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred EEEEEEeCCc-----eeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccc
Confidence 3455555443 6677778888999999999997533 2345678999999877 557889999999999765
Q ss_pred CcchhhHHHHhhCCCCceEeEEEccCCCC
Q psy6105 145 GIGRDHWLEMLDNPRQPVTQWYPLMETVP 173 (194)
Q Consensus 145 ~~~~~~W~~~l~~p~~~~~~W~~L~~~~~ 173 (194)
- ..+ ..+.....+||+|.+...
T Consensus 95 -~-~~~-----~~~~~~~~~W~~LL~~~~ 116 (340)
T PF12416_consen 95 -V-VPQ-----EKNQKQKPKWYKLLSSSS 116 (340)
T ss_pred -c-ccc-----ccccccCCCeeEcccccc
Confidence 0 000 111246679999999743
No 226
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=95.93 E-value=0.01 Score=40.81 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=18.0
Q ss_pred CCceeeeeEEEecCC--CceeEEEEEc
Q psy6105 55 LNPFYNEALLFDVPA--NPYVKVYLVC 79 (194)
Q Consensus 55 ~nP~w~e~f~f~~~~--dpyv~v~l~~ 79 (194)
+||.|||.|.|.+.. +..+.+.+.+
T Consensus 45 ~nP~Wne~f~f~v~~~~~~~l~i~v~d 71 (118)
T cd08681 45 QHPEWDEELRFEITEDKKPILKVAVFD 71 (118)
T ss_pred CCCccCceEEEEecCCCCCEEEEEEEe
Confidence 599999999999874 3345555543
No 227
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=95.93 E-value=0.005 Score=44.73 Aligned_cols=12 Identities=42% Similarity=0.766 Sum_probs=10.9
Q ss_pred ceeeeeEEEecC
Q psy6105 57 PFYNEALLFDVP 68 (194)
Q Consensus 57 P~w~e~f~f~~~ 68 (194)
|.|||.|.|.+.
T Consensus 46 P~WNE~F~f~v~ 57 (150)
T cd04019 46 PSWNEELMFVAA 57 (150)
T ss_pred CcccCcEEEEec
Confidence 899999999875
No 228
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=95.92 E-value=0.0046 Score=43.35 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=6.8
Q ss_pred CCceeEEEEeCCC
Q psy6105 130 SDELMGCTAIGSS 142 (194)
Q Consensus 130 ~~~~iG~~~i~l~ 142 (194)
+....|.+.+.+.
T Consensus 108 ~~~~~G~i~~~~~ 120 (126)
T cd04046 108 AGEVPGTISVKVT 120 (126)
T ss_pred CCCCCCEEEEEEE
Confidence 3445566655543
No 229
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=95.91 E-value=0.0061 Score=43.26 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=4.3
Q ss_pred EEEeeccCCC
Q psy6105 9 FRADNYCRPT 18 (194)
Q Consensus 9 ~r~~~~~a~~ 18 (194)
++|+++.+.+
T Consensus 8 ~~a~~L~~~d 17 (135)
T cd04017 8 YQARDLLAAD 17 (135)
T ss_pred EEeecCcCCC
Confidence 3444444433
No 230
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=95.88 E-value=0.0053 Score=42.71 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=23.0
Q ss_pred eEEecCCCCceeeeeEEEe-cC----CCceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFD-VP----ANPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~-~~----~dpyv~v~l~~ 79 (194)
|+++++++||.|||.|.|. +. .+-.+.+.+.+
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 4677899999999999995 33 13456666643
No 231
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=95.87 E-value=0.0061 Score=42.90 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=22.5
Q ss_pred eEEecCCCCceeeeeEEEecCC---CceeEEEEE
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA---NPYVKVYLV 78 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~---dpyv~v~l~ 78 (194)
|++++++.||.|||+|.|.+.. +..+.+.+.
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~ 87 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVW 87 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEE
Confidence 5677889999999999998762 234555443
No 232
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=95.87 E-value=0.0056 Score=42.18 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=8.3
Q ss_pred eeeeEEEecC
Q psy6105 59 YNEALLFDVP 68 (194)
Q Consensus 59 w~e~f~f~~~ 68 (194)
|||+|.|.+.
T Consensus 48 W~e~f~~~~~ 57 (119)
T cd08377 48 WNKIFTFPIK 57 (119)
T ss_pred cCcEEEEEec
Confidence 8999998865
No 233
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=95.84 E-value=0.0063 Score=42.73 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=3.2
Q ss_pred eeEEEEe
Q psy6105 133 LMGCTAI 139 (194)
Q Consensus 133 ~iG~~~i 139 (194)
.-|.+.+
T Consensus 119 ~~G~i~~ 125 (127)
T cd04027 119 VSGAIRL 125 (127)
T ss_pred EeEEEEE
Confidence 4455443
No 234
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.77 E-value=0.033 Score=37.48 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=41.3
Q ss_pred CCceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecC
Q psy6105 69 ANPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYD 126 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~ 126 (194)
++.||.+.+..++..+. ...|..+.....+.|||.+.|++...++ .++.|.|+||+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 36888888876555433 3455555556668999999998776665 3578999999853
No 235
>KOG2060|consensus
Probab=95.60 E-value=0.029 Score=46.08 Aligned_cols=73 Identities=26% Similarity=0.425 Sum_probs=57.6
Q ss_pred eeEEEeeccCCCCCCCCCCC-CCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-CCceeEEEEEc
Q psy6105 7 RSFRADNYCRPTIGNRSIPS-VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-ANPYVKVYLVC 79 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g-~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-~dpyv~v~l~~ 79 (194)
-.+-+....|++|..+...+ .++|||+|++++.+.-..+.+|+...+|+.|.|.+...|.-. ..-|..+...+
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 35667788889998776544 689999999999877778899999999999999998888643 44566666553
No 236
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=95.58 E-value=0.0096 Score=41.76 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=12.3
Q ss_pred CCceeeeeEEEecC
Q psy6105 55 LNPFYNEALLFDVP 68 (194)
Q Consensus 55 ~nP~w~e~f~f~~~ 68 (194)
+||.|||.|.|.+.
T Consensus 44 ~nP~WnE~f~f~~~ 57 (126)
T cd08400 44 PNPVWSEEFVFDDL 57 (126)
T ss_pred CCCccCCEEEEecC
Confidence 69999999999854
No 237
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=95.57 E-value=0.027 Score=36.57 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=24.0
Q ss_pred eEEecCCCCceeeeeEEEecCC--CceeEEEEEc
Q psy6105 48 TSVKKNSLNPFYNEALLFDVPA--NPYVKVYLVC 79 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~~ 79 (194)
|+++.++.||.|||.|.|.+.. ...+.+.+.+
T Consensus 39 T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~ 72 (101)
T smart00239 39 TKVVKNTLNPVWNETFEFEVPPPELAELEIEVYD 72 (101)
T ss_pred eeEecCCCCCcccceEEEEecCcccCEEEEEEEe
Confidence 4566777899999999999875 5666666543
No 238
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.56 E-value=0.0093 Score=40.84 Aligned_cols=27 Identities=37% Similarity=0.620 Sum_probs=18.7
Q ss_pred cCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105 52 KNSLNPFYNEALLFDVPA--NPYVKVYLV 78 (194)
Q Consensus 52 ~~t~nP~w~e~f~f~~~~--dpyv~v~l~ 78 (194)
.++.||.|||.|.|.+.. +..+.+.+.
T Consensus 40 ~~~~~P~Wne~f~~~~~~~~~~~l~~~v~ 68 (115)
T cd04040 40 KKTLNPVWNESFEVPVPSRVRAVLKVEVY 68 (115)
T ss_pred cCCCCCcccccEEEEeccCCCCEEEEEEE
Confidence 358999999999998763 233444443
No 239
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.56 E-value=0.058 Score=40.74 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=48.8
Q ss_pred eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-C---CCceeEEEEeCCC
Q psy6105 82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-G---SDELMGCTAIGSS 142 (194)
Q Consensus 82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-~---~~~~iG~~~i~l~ 142 (194)
.....++|.+...+.+|.|+|++-..++.+......|.+++++...- . ....+|...++|-
T Consensus 50 ~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 50 EPIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred CcceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 34567888888889999999999999999998899999999884321 1 2246899888885
No 240
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=95.39 E-value=0.016 Score=36.77 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred eEEecCCCCceeeeeEEEecC--CCceeEEEEE
Q psy6105 48 TSVKKNSLNPFYNEALLFDVP--ANPYVKVYLV 78 (194)
Q Consensus 48 T~~~~~t~nP~w~e~f~f~~~--~dpyv~v~l~ 78 (194)
|++++++.+|.|+|.|.|.+. ....+.+.+.
T Consensus 38 T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~ 70 (85)
T PF00168_consen 38 TKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVW 70 (85)
T ss_dssp ECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEE
T ss_pred eeeeeccccceeeeeeeeeeecccccceEEEEE
Confidence 567788899999999999965 2223555554
No 241
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.30 E-value=0.067 Score=40.11 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=39.4
Q ss_pred EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC-C--CceeEEEEeCCCCC
Q psy6105 85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG-S--DELMGCTAIGSSFI 144 (194)
Q Consensus 85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~-~--~~~iG~~~i~l~~~ 144 (194)
....|.+...+.+|.|+|+|-+.++.....+..|.+++++...-. + ...+|.+.++|-..
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~ 121 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDN 121 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-T
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeC
Confidence 467778888889999999999999988878889999999943321 2 26899999999763
No 242
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=95.18 E-value=0.017 Score=40.72 Aligned_cols=14 Identities=14% Similarity=0.679 Sum_probs=12.4
Q ss_pred CCceeeeeEEEecC
Q psy6105 55 LNPFYNEALLFDVP 68 (194)
Q Consensus 55 ~nP~w~e~f~f~~~ 68 (194)
.||.|||.|.|.+.
T Consensus 41 ~nP~WnE~F~F~~~ 54 (127)
T cd08394 41 SQPCWEQDFMFEIN 54 (127)
T ss_pred CCCceeeEEEEEEc
Confidence 49999999999875
No 243
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=94.68 E-value=0.021 Score=39.69 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=24.5
Q ss_pred EEeeEEecCCC-CceeeeeEEEecCCC--ceeEEEEE
Q psy6105 45 KKRTSVKKNSL-NPFYNEALLFDVPAN--PYVKVYLV 78 (194)
Q Consensus 45 ~~~T~~~~~t~-nP~w~e~f~f~~~~d--pyv~v~l~ 78 (194)
+.+|.++.++. ||.|||.|.|.+... .++++.+.
T Consensus 43 ~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~ 79 (128)
T cd00275 43 KFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVY 79 (128)
T ss_pred cEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEE
Confidence 68888887775 999999999986522 23445443
No 244
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.52 E-value=0.068 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.4
Q ss_pred EeeEEecCCCCceeeeeEEEecC
Q psy6105 46 KRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 46 ~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+||++++++.||.|||.|+|.+.
T Consensus 2013 ~kTkvvk~~~nP~Wne~f~~~~~ 2035 (2102)
T PLN03200 2013 RQTKVVSHSSSPEWKEGFTWAFD 2035 (2102)
T ss_pred ccccccCCCCCCCcccceeeeec
Confidence 03799999999999999997665
No 245
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=93.65 E-value=0.041 Score=38.27 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=15.2
Q ss_pred cCCCCceeeeeEEEecCC
Q psy6105 52 KNSLNPFYNEALLFDVPA 69 (194)
Q Consensus 52 ~~t~nP~w~e~f~f~~~~ 69 (194)
.++.||.|||.|.|.+..
T Consensus 42 ~~~~~P~Wne~f~f~v~~ 59 (125)
T cd04051 42 DGGTNPTWNETLRFPLDE 59 (125)
T ss_pred CCCCCCCCCCEEEEEcCh
Confidence 347999999999999873
No 246
>KOG1327|consensus
Probab=93.47 E-value=0.13 Score=44.49 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=44.3
Q ss_pred EEEeeccCCCCCCCCCCCCCCcEEEEEEE-cCCeEeEEEeeEEecCCCCceeeee
Q psy6105 9 FRADNYCRPTIGNRSIPSVADPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEA 62 (194)
Q Consensus 9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~-~~~~~~~~~~T~~~~~t~nP~w~e~ 62 (194)
...-..+|++|..+|..+++|||..++-. .++......+|.++++|+||.|-+.
T Consensus 138 ~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~ 192 (529)
T KOG1327|consen 138 VVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF 192 (529)
T ss_pred eeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc
Confidence 33455678999999999999999987755 4566777899999999999999643
No 247
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.45 E-value=1.2 Score=31.62 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=51.2
Q ss_pred CCCCcccceEEEEecC------CCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105 95 SLNPFYNEALLFDVPA------SNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168 (194)
Q Consensus 95 t~nP~~~e~f~f~v~~------~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L 168 (194)
+..-.|+|.|.+.+.. ..+....+.|.|+....-++...+|.+.|+|.+. ..........=++|
T Consensus 49 ~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey----------~~~~~~~~~~~~~l 118 (143)
T PF10358_consen 49 NGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY----------ANEDEEPITVRLLL 118 (143)
T ss_pred ccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh----------hCcCCCcEEEEEeC
Confidence 4456999999887422 1255667889998864333336999999999854 22224566677788
Q ss_pred cCCCCCCccccCCCCcceeeeecC
Q psy6105 169 METVPGQIPLSHSSNLPSSLSCLN 192 (194)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~ 192 (194)
...+.. ...|.++|++..
T Consensus 119 ~~~~~~------~a~L~isi~~~~ 136 (143)
T PF10358_consen 119 KKCKKS------NATLSISISLSE 136 (143)
T ss_pred ccCCCC------CcEEEEEEEEEE
Confidence 776221 224555565543
No 248
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=93.27 E-value=0.031 Score=36.65 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=37.2
Q ss_pred eccCCCC-CCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 13 NYCRPTI-GNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 13 ~~~a~~l-~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
++.+++| .+...+.....|++--+.-. +--..+|.++++..||+|.|+|.|.+.
T Consensus 5 v~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFqi~ 59 (103)
T cd08684 5 VLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFAIK 59 (103)
T ss_pred EEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHHHH
Confidence 3444444 44455556667887444321 223799999999999999999999876
No 249
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.93 E-value=0.52 Score=35.11 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCC-----CCCCceeEEEEeCCCC
Q psy6105 88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR-----IGSDELMGCTAIGSSF 143 (194)
Q Consensus 88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~-----~~~~~~iG~~~i~l~~ 143 (194)
-+.++....+|.|+|+|-..++........|.+++++... -.....+|.+.++|-.
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444489999999999997766677899999998442 2346789999999975
No 250
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.70 E-value=3.1 Score=30.72 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=53.6
Q ss_pred CceeEEEEEcCCeEeEEeeceeec--CCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105 70 NPYVKVYLVCEGKRIRKKRTSVKK--NSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG 147 (194)
Q Consensus 70 dpyv~v~l~~~~~~~~~~kT~~~~--~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 147 (194)
.-|+++.+. ++. ..+|.... ....-.|+|.|.+.+.. .. ..|.|.||.... ..+.+|+.+.+++-.....
T Consensus 38 ~~~ikl~~N--~k~--V~~T~~~~l~~dF~v~f~~~f~v~i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 38 RYYIKLFFN--DKE--VSRTRSRPLWSDFRVHFNEIFNVQITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred eEEEEEEEC--CEE--EEeeeeEecCCCeEEeccCEEEEEEec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 357777763 333 33444332 23334778888887743 33 389999999776 6789999999998765321
Q ss_pred hhhHHHHhhCCCCceEeEEEccCCC
Q psy6105 148 RDHWLEMLDNPRQPVTQWYPLMETV 172 (194)
Q Consensus 148 ~~~W~~~l~~p~~~~~~W~~L~~~~ 172 (194)
. .-......||.+.+..
T Consensus 110 ~--------~~~~~~~~~~eFsS~~ 126 (168)
T PF15625_consen 110 T--------STDNVPLEEYEFSSDQ 126 (168)
T ss_pred c--------cccCCceEeEEEcCCc
Confidence 0 0011156777775543
No 251
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=92.69 E-value=0.64 Score=34.77 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=47.3
Q ss_pred eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC------CCceeEEEEeCCCCC
Q psy6105 84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG------SDELMGCTAIGSSFI 144 (194)
Q Consensus 84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~------~~~~iG~~~i~l~~~ 144 (194)
.....|.+...+.+|.|+|++-..++........|.++.++.+--. ....+|.+.++|-..
T Consensus 53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~ 119 (179)
T cd08696 53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRN 119 (179)
T ss_pred ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecC
Confidence 3467888888899999999999999887777789999999833211 135688888888654
No 252
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=92.39 E-value=1.7 Score=31.79 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=47.9
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEe-EEEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEEc
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLVC 79 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~~ 79 (194)
+.||++.++|.++...+ .+|-||++.+-.+++.. ....|..+.. .++.|||-..|.+. .+....+.+..
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 57999999999997653 46889998877643222 1234555554 68999999999866 45566666543
No 253
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=92.27 E-value=1.3 Score=33.28 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=47.0
Q ss_pred eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecC--CCC-------CCceeEEEEeCCCC
Q psy6105 84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYD--RIG-------SDELMGCTAIGSSF 143 (194)
Q Consensus 84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~--~~~-------~~~~iG~~~i~l~~ 143 (194)
.....|.+...+.+|.|.|++-..++........|.++.++.. .-. ....+|.+.++|-.
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4577888888889999999999999888777889999999853 111 13468888888865
No 254
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=91.52 E-value=0.19 Score=35.52 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=32.6
Q ss_pred CCCcEEEEEE--EcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 27 VADPYVKVYL--VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 27 ~~dpyv~v~l--~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
..++||++.+ +++ .+..+|+++.++..|.|+-.|+|.++
T Consensus 32 GVN~yv~i~lSFl~~---~e~r~TrtVArSFcPeF~Hh~Efpc~ 72 (143)
T cd08683 32 GVNSYVTIHLSFLPE---KELRRTRTVARSFCPEFNHHVEFPCN 72 (143)
T ss_pred ccceEEEEEeccCCC---CceeeccchhhhcCCCccceEEEecc
Confidence 3579999885 454 45899999999999999999999866
No 255
>PLN02964 phosphatidylserine decarboxylase
Probab=91.11 E-value=0.38 Score=43.00 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=33.3
Q ss_pred CCcEEE-EEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCC--ceeEEEEE
Q psy6105 28 ADPYVK-VYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN--PYVKVYLV 78 (194)
Q Consensus 28 ~dpyv~-v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~d--pyv~v~l~ 78 (194)
.|||.. +.++. +.++|.+.++|+||+||+...|.+..+ -|..+.+.
T Consensus 68 ~~~~~~~~~~g~-----~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 116 (644)
T PLN02964 68 KDKWLACVSFGE-----QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVF 116 (644)
T ss_pred CCcEEEEEEecc-----eeeeeccccccCCcccchhhceEeccCCcceEEEEEE
Confidence 588765 44543 389999999999999999888876621 24455544
No 256
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.40 E-value=3.5 Score=30.83 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=46.5
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLV 78 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~ 78 (194)
-..||+++++++++.. +......-||++.|-..+......+|..+.-+.++.|||-..|.+. .+....+.+.
T Consensus 9 ~~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 9 DRKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CCCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence 3568899999975432 2233334677776655432333446777777788999999999866 4555555554
No 257
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=89.98 E-value=0.92 Score=33.71 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=48.1
Q ss_pred ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEe-EEEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEE
Q psy6105 6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLV 78 (194)
Q Consensus 6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~ 78 (194)
-+.||++++++.++... ....+-||++.|-..++.. ....|+.+.....+.|||.+.|++. .+....+.+.
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence 35799999999999862 3456678887776543222 2345666665677999999999866 4445555554
No 258
>PLN02352 phospholipase D epsilon
Probab=89.43 E-value=0.4 Score=43.47 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=26.9
Q ss_pred CcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 29 dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
||||.|.+... ...+| .+.-||.|+|.|...+.
T Consensus 37 ~~y~tv~~~~~----~v~rt---~~~~~p~w~e~f~i~~a 69 (758)
T PLN02352 37 ATYVTIKIGNK----KVAKT---SHEYDRVWNQTFQILCA 69 (758)
T ss_pred CceEEEEeCCc----EEecC---CCCCCCccccceeEEee
Confidence 99999999864 35677 55669999999988765
No 259
>KOG1264|consensus
Probab=85.77 E-value=1.1 Score=40.97 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=50.2
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE-EEeeEEecCCCCceee-eeEEEecCCCceeEEEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYN-EALLFDVPANPYVKVYL 77 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~-e~f~f~~~~dpyv~v~l 77 (194)
..+.++++-||.|+... .|-+.|||.|.+.+..-... .+.|.++.+.+||+|| |.|+|.+..--|+-+.+
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF 1136 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRF 1136 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEE
Confidence 45779999999998444 44566999999986433333 4555667799999999 99999987333333333
No 260
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=85.63 E-value=1.1 Score=30.70 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=53.2
Q ss_pred ceEEEEecCCCC----CCceEEEEEEec-CC--CCCCceeEEEEeCCCCCCcch-hhHHHHhh-CCCCceEeEEEccCCC
Q psy6105 102 EALLFDVPASNV----NDVSLIIKVIDY-DR--IGSDELMGCTAIGSSFIGIGR-DHWLEMLD-NPRQPVTQWYPLMETV 172 (194)
Q Consensus 102 e~f~f~v~~~~l----~~~~l~i~V~d~-~~--~~~~~~iG~~~i~l~~~~~~~-~~W~~~l~-~p~~~~~~W~~L~~~~ 172 (194)
....|.+.++.+ ....|.+.+++- .. .....+||.+.+++...-... +.|.+.-. .....+.+=|+|.+..
T Consensus 11 KScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~ 90 (112)
T PF14924_consen 11 KSCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN 90 (112)
T ss_pred cEEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC
Confidence 345666555433 345777877652 21 356678999999997542211 11211101 1223566789998744
Q ss_pred CCCccccCCCCcceeeeecCC
Q psy6105 173 PGQIPLSHSSNLPSSLSCLNG 193 (194)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~ 193 (194)
.. ..|...|-++|+||+.
T Consensus 91 ~~---~~G~I~l~iRLsclG~ 108 (112)
T PF14924_consen 91 GN---PVGEISLYIRLSCLGS 108 (112)
T ss_pred Cc---eeeeEEEEEEEecCcc
Confidence 33 4588999999999975
No 261
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=85.00 E-value=4.3 Score=27.10 Aligned_cols=72 Identities=21% Similarity=0.117 Sum_probs=47.2
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE-EEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLV 78 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~ 78 (194)
+.++....++.+.........+|-||.+.|-.+++... ...|..+.-...+.|||-..|.+. .+....+.+.
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~ 88 (100)
T smart00142 11 RNLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIY 88 (100)
T ss_pred CceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEE
Confidence 34667777777776665444468899998876433221 345666666667999999999765 4455555553
No 262
>KOG4027|consensus
Probab=83.81 E-value=15 Score=26.93 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=46.1
Q ss_pred EEecCCCceeEEEEEcCCeEeEE-e--eceeecCCCCCcccceEEEEecCC-------CCCCceEEEEEEecCCCCCCce
Q psy6105 64 LFDVPANPYVKVYLVCEGKRIRK-K--RTSVKKNSLNPFYNEALLFDVPAS-------NVNDVSLIIKVIDYDRIGSDEL 133 (194)
Q Consensus 64 ~f~~~~dpyv~v~l~~~~~~~~~-~--kT~~~~~t~nP~~~e~f~f~v~~~-------~l~~~~l~i~V~d~~~~~~~~~ 133 (194)
+|...+|.|++.++...+.+... . .+-....+..-.+++.+.|+++.+ ...=..|.+.|+..|.+++|.+
T Consensus 21 ~FPe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v 100 (187)
T KOG4027|consen 21 EFPEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCV 100 (187)
T ss_pred ecCCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCccee
Confidence 44444788999888644432211 1 111111111224555555554332 1122479999999999999999
Q ss_pred eEEEEeCCCCC
Q psy6105 134 MGCTAIGSSFI 144 (194)
Q Consensus 134 iG~~~i~l~~~ 144 (194)
.|...|.+...
T Consensus 101 ~GYg~~hiP~~ 111 (187)
T KOG4027|consen 101 TGYGMLHIPTE 111 (187)
T ss_pred eeeeeEecCcC
Confidence 98877776543
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=82.00 E-value=3.6 Score=29.76 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=47.3
Q ss_pred CCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE-EEeeEEecCCCCceeeeeEEEecC-----CCceeEEEE
Q psy6105 4 KGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYL 77 (194)
Q Consensus 4 ~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l 77 (194)
+....+|+.+.+..++...+ ....+-||.+.|-..++... ...|.......++.|||...|.+. .+....+.+
T Consensus 5 di~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl 83 (156)
T cd08380 5 DINFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI 83 (156)
T ss_pred ecCCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence 44567899999998887622 33466788887775433222 233333333368999999999865 455555555
Q ss_pred E
Q psy6105 78 V 78 (194)
Q Consensus 78 ~ 78 (194)
.
T Consensus 84 ~ 84 (156)
T cd08380 84 Y 84 (156)
T ss_pred E
Confidence 4
No 264
>KOG1329|consensus
Probab=81.36 E-value=2.7 Score=38.66 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=70.7
Q ss_pred CceeEEEEEcCCeEeEEeeceeecCC-CCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105 70 NPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148 (194)
Q Consensus 70 dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~ 148 (194)
++|+.+.+... ...+|..+.+. .+|.|.+.|. +...... ..+.+.+.+.+-.+...++|.+.++...+..
T Consensus 139 e~Ylt~~l~~~----~~~~t~~~~~f~e~s~~~f~~~--~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~-- 209 (887)
T KOG1329|consen 139 ENYLTVVLHKA----RYRRTHVIYEFLENSRWSFSFD--IGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCS-- 209 (887)
T ss_pred cchheeeechh----hhhchhhhhcccccchhhhhcc--ccccccc-cEEEEeecCCccccceeEEEEeccchhhhhc--
Confidence 78888877432 24566666554 7899997654 4333333 4788888888877767899999998875532
Q ss_pred hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105 149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN 192 (194)
Q Consensus 149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~ 192 (194)
+..+.+|+++.... .++..+..+..+++.+.+
T Consensus 210 ----------~~~~~~~~~Il~~d--~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 210 ----------GHRIGGWFPILDND--GKPHQKGSNESLRLGFTP 241 (887)
T ss_pred ----------cccccceeeeeccC--CccccCCcccceEEeeEe
Confidence 36678899998844 467777777777666554
No 265
>KOG0906|consensus
Probab=80.49 E-value=3.1 Score=37.13 Aligned_cols=75 Identities=27% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCceeEEEEEcCCeE-eEEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105 69 ANPYVKVYLVCEGKR-IRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSF 143 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~-~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 143 (194)
+|.|++..+...+.. ..--+|+.+.....-.|||.+.+.+...++ .++.+.|++|+....+...++|...+.+..
T Consensus 47 ~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 47 SDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred hhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 567776655533221 112233333222223599999998877766 357899999998777788899998887764
No 266
>KOG1265|consensus
Probab=80.03 E-value=1.2 Score=40.86 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=55.3
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEE--cCCeEeEEEeeEEec-CCCCceeee-eEEEe-c--CCCceeEEEEEc
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLV--CEGKRIRKKRTSVKK-NSLNPFYNE-ALLFD-V--PANPYVKVYLVC 79 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~--~~~~~~~~~~T~~~~-~t~nP~w~e-~f~f~-~--~~dpyv~v~l~~ 79 (194)
..+++++++++-|..++.+ .||.|.+- |..-.++.++|+++. +.+||+|+| .|.|. | +.=.++++.+..
T Consensus 703 ~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 3578999999999888865 79998875 433233467777665 778999985 67775 2 122355555554
Q ss_pred CCeEeEEeeceeecCCCCCccc
Q psy6105 80 EGKRIRKKRTSVKKNSLNPFYN 101 (194)
Q Consensus 80 ~~~~~~~~kT~~~~~t~nP~~~ 101 (194)
.+++..-++--. -..+++-|.
T Consensus 779 EggK~ig~RIlp-vd~l~~GYr 799 (1189)
T KOG1265|consen 779 EGGKFIGQRILP-VDGLNAGYR 799 (1189)
T ss_pred cCCceeeeeccc-hhcccCcce
Confidence 444333222211 134666555
No 267
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=79.87 E-value=4.6 Score=29.47 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=40.1
Q ss_pred CceeEEEeeccCCCCCCCCC--CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 5 GSRSFRADNYCRPTIGNRSI--PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 5 ~~~~~r~~~~~a~~l~~~d~--~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
+.+.+-++++-++.....-. .|..+..+.+.+.=. .++++++-++.+.+|.|+|.|-|++.
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~---~QRF~S~~Vp~~~eP~f~e~Flf~l~ 69 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR---GQRFRSKPVPCACEPDFNEEFLFELP 69 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec---CceEecCCcccccCCCCCCcEEEEec
Confidence 33445555555544332211 155566666665432 23899999999999999999999987
No 268
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=79.60 E-value=1.2 Score=30.27 Aligned_cols=15 Identities=33% Similarity=0.301 Sum_probs=13.3
Q ss_pred CCCceeeeeEEEecC
Q psy6105 54 SLNPFYNEALLFDVP 68 (194)
Q Consensus 54 t~nP~w~e~f~f~~~ 68 (194)
+.||.|||.|.|.+.
T Consensus 42 srnd~WnE~F~i~Vd 56 (109)
T cd08689 42 SRNDRWNEDFEIPVE 56 (109)
T ss_pred CCCCcccceEEEEec
Confidence 479999999999876
No 269
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.02 E-value=10 Score=25.80 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=39.7
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCC-----CCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCC
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNV-----NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQ 160 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l-----~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~ 160 (194)
.+.|.++. ..+|.+|-+..|.|..+++ ....+.|+++..-. .....||.+.|.+. +++..++.
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~----------~ll~~~~~ 79 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLR----------PLLESNGE 79 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--S----------HHHH--S-
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeech----------hhhcCCCc
Confidence 66777777 5899999999998877643 45688999987542 34678999999998 56666665
Q ss_pred ceEeEEEccCCC
Q psy6105 161 PVTQWYPLMETV 172 (194)
Q Consensus 161 ~~~~W~~L~~~~ 172 (194)
.+..=-.|.+..
T Consensus 80 ~i~~~~~l~g~~ 91 (107)
T PF11618_consen 80 RIHGSATLVGVS 91 (107)
T ss_dssp -EEEEEEE-BSS
T ss_pred eEEEEEEEeccC
Confidence 666666665544
No 270
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=68.10 E-value=8.7 Score=29.01 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.9
Q ss_pred eEEEeeEEecCCCCceeeeeEEEecCCCceeEEE
Q psy6105 43 IRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVY 76 (194)
Q Consensus 43 ~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~ 76 (194)
....+|.+...+.+|.|+|++...++.+.+-...
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~H 85 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSH 85 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCee
Confidence 4468899999999999999999999855444333
No 271
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=65.60 E-value=58 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=26.0
Q ss_pred EeEEEeeEEecCCCCceeeeeEEEecCCCcee
Q psy6105 42 RIRKKRTSVKKNSLNPFYNEALLFDVPANPYV 73 (194)
Q Consensus 42 ~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv 73 (194)
.....+|.+.....+|.|+|++...++.+-+-
T Consensus 51 ~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~ 82 (196)
T cd08694 51 PIDEYKSVIYYQVDKPKWFETFKVAIPIEDFK 82 (196)
T ss_pred cceeEEEEEEeecCCCCCceeEEEecChhhCC
Confidence 44578888989999999999999999855443
No 272
>KOG3837|consensus
Probab=65.29 E-value=1.9 Score=36.38 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 27 ~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
..|-||++.+.-......+.+|.++++|..|.|+|.|...+.
T Consensus 387 hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~ 428 (523)
T KOG3837|consen 387 HLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIR 428 (523)
T ss_pred hHHhhhcccccccccccccCccceeeCCCCCCcccceeeecc
Confidence 456788888653323556899999999999999999998766
No 273
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=65.01 E-value=33 Score=22.80 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=32.1
Q ss_pred EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105 86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSF 143 (194)
Q Consensus 86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 143 (194)
...|.-.. ..+..|++.|.+++.. .+.|+|.||-+|. ..+-|...+.|..
T Consensus 22 VgqT~Wk~-~s~q~WDQ~Fti~LdR----sRELEI~VywrD~---RslCav~~lrLEd 71 (98)
T cd08687 22 VGQTQWKP-KSNQAWDQSFTLELER----SRELEIAVYWRDW---RSLCAVKFLKLED 71 (98)
T ss_pred Eeeccccc-cccccccceeEEEeec----ccEEEEEEEEecc---hhhhhheeeEhhh
Confidence 44444332 2577899999998853 3589999987664 2355555555543
No 274
>KOG0904|consensus
Probab=55.07 E-value=16 Score=34.03 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=35.3
Q ss_pred ceeEEEEEcCCeEeEE-eeceeecCCCCCcccceEEEEecCCCCC-CceEEEEEEe
Q psy6105 71 PYVKVYLVCEGKRIRK-KRTSVKKNSLNPFYNEALLFDVPASNVN-DVSLIIKVID 124 (194)
Q Consensus 71 pyv~v~l~~~~~~~~~-~kT~~~~~t~nP~~~e~f~f~v~~~~l~-~~~l~i~V~d 124 (194)
.+|++.+..+...+.+ ..|..+....+|.||+.+.|++.-.++. .+.|-|.|+.
T Consensus 365 V~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 365 VFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred EEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 3455555444444444 5666666688999999999998666553 3456677765
No 275
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=49.52 E-value=67 Score=22.66 Aligned_cols=49 Identities=27% Similarity=0.301 Sum_probs=31.4
Q ss_pred cEEEEEEEcCCeEeE--EEeeEEecCC-CCceeeeeEEEecC-----CCceeEEEEE
Q psy6105 30 PYVKVYLVCEGKRIR--KKRTSVKKNS-LNPFYNEALLFDVP-----ANPYVKVYLV 78 (194)
Q Consensus 30 pyv~v~l~~~~~~~~--~~~T~~~~~t-~nP~w~e~f~f~~~-----~dpyv~v~l~ 78 (194)
-||.+.|--+++... ...|..+.-+ .++.|||.+.|.+. .+..+.+.+.
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~ 60 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLY 60 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEE
Confidence 467777765433332 3467666666 89999999999865 5666666654
No 276
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=49.22 E-value=76 Score=23.23 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCcccceEEEEecCCCCCC-ceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105 97 NPFYNEALLFDVPASNVND-VSLIIKVIDYDRIGSDELMGCTAIGSSF 143 (194)
Q Consensus 97 nP~~~e~f~f~v~~~~l~~-~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 143 (194)
.-.||--|.+.+....... ..|.++||..|.++++.+.|...+.+..
T Consensus 56 ~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 56 VAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred ceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeCC
Confidence 4578877766655444432 5899999999999999998776665543
No 277
>KOG1031|consensus
Probab=42.38 E-value=22 Score=31.61 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=16.3
Q ss_pred eEEecCCCCceee-eeEEEecC
Q psy6105 48 TSVKKNSLNPFYN-EALLFDVP 68 (194)
Q Consensus 48 T~~~~~t~nP~w~-e~f~f~~~ 68 (194)
|.+..+++||.|| +-|.|++.
T Consensus 40 tdvf~kslnp~wnsdwfkfevd 61 (1169)
T KOG1031|consen 40 TDVFLKSLNPQWNSDWFKFEVD 61 (1169)
T ss_pred hhhhhhhcCCcccccceEEecC
Confidence 4456678999999 56788877
No 278
>PF15532 Toxin_53: Putative toxin 53
Probab=41.46 E-value=92 Score=20.96 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=37.8
Q ss_pred eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeE----eEEEeeEEecCCCCceeeeeE
Q psy6105 7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKR----IRKKRTSVKKNSLNPFYNEAL 63 (194)
Q Consensus 7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~----~~~~~T~~~~~t~nP~w~e~f 63 (194)
...|++++.+.--.+...++..-+-++|..+...+. .+-.++.+.+ ..||.||+..
T Consensus 34 ~tyrvRvH~~Dp~ap~Gsnaa~G~IyRI~qg~G~~y~d~~g~~~h~s~l~-~~sP~yn~~a 93 (102)
T PF15532_consen 34 KTYRVRVHPADPTAPAGSNAANGWIYRISQGSGWEYMDPDGKWHHESVLK-PNSPNYNEDA 93 (102)
T ss_pred ceEEEEecCCCCCCCCCCcccCCCEEEEEeccCceEecCCCCeeeccccc-cCCCCcChhh
Confidence 457899999988878777888889999883322111 1234455555 7899998753
No 279
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=40.70 E-value=49 Score=24.89 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=25.4
Q ss_pred EeEEEeeEEecCCCCceeeeeEEEecCCCce
Q psy6105 42 RIRKKRTSVKKNSLNPFYNEALLFDVPANPY 72 (194)
Q Consensus 42 ~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpy 72 (194)
......|.+...+.+|.|.|++-..++.+..
T Consensus 54 ~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~ 84 (185)
T cd08697 54 FTTSAYAAVLHHNQNPEFYDEIKIELPTQLH 84 (185)
T ss_pred cceEEEEEEEEcCCCCccceeEEEecCCcCC
Confidence 4557888999999999999999999885443
No 280
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=40.24 E-value=79 Score=23.04 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCCCCcEEEEEEEcCCeEe-EEEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEEc
Q psy6105 25 PSVADPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLVC 79 (194)
Q Consensus 25 ~g~~dpyv~v~l~~~~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~~ 79 (194)
...+|-||.+.|-.+++.. ...+|..+.-+..+.|||-..|.+. .+..+.+.+.+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~ 87 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWD 87 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEE
Confidence 4457889999887653221 2346667776778999999999876 56667766653
No 281
>KOG0694|consensus
Probab=39.06 E-value=16 Score=32.94 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCC
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~ 127 (194)
.++|+.|.+-.. ....+.+.+.+..|.|+++|..++... ..+.|.|+....
T Consensus 28 l~~y~~v~vk~~----~~~~~~~~~~~~~~~~~~~F~~~v~~~----~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 28 LQPYLAVELKVK----QGAENMTKVELRIPELRETFHVEVVAG----GAKNIIVLLKSP 78 (694)
T ss_pred hhhhheecccee----ecccccCCCCCCCchhhhheeeeeecC----CceEEEEEecCC
Confidence 356766665311 123444467789999999999886543 478888887543
No 282
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=36.56 E-value=33 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEeeEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105 44 RKKRTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV 78 (194)
Q Consensus 44 ~~~~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~ 78 (194)
....|.+...+.+|.|+|+|...++. +..+.+.+.
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~ 97 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFY 97 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEE
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEE
Confidence 45778888889999999999998873 345555553
No 283
>KOG2419|consensus
Probab=33.60 E-value=1.5 Score=38.96 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=26.9
Q ss_pred CCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEec
Q psy6105 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV 67 (194)
Q Consensus 28 ~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~ 67 (194)
.+|++...++.+ ..+|+....+.+|+|||. .|+.
T Consensus 305 ~~~~~itsf~~~-----~frt~~~~~~e~piyNe~-~~E~ 338 (975)
T KOG2419|consen 305 DKWLAITSFGEQ-----TFRTEISDDTEKPIYNED-ERED 338 (975)
T ss_pred CCchheeecchh-----hhhhhhhccccccccccc-cccc
Confidence 457777777765 789999999999999996 4443
No 284
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=33.26 E-value=1.8e+02 Score=20.82 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=46.6
Q ss_pred CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecC----------CCCCCceEEEEEEecCCCCCCceeEEEE
Q psy6105 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA----------SNVNDVSLIIKVIDYDRIGSDELMGCTA 138 (194)
Q Consensus 69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~----------~~l~~~~l~i~V~d~~~~~~~~~iG~~~ 138 (194)
.|.|..|++.+. .++|+......-=.|+|.|.|+--. +.+....+.|+++...... .+.|+...
T Consensus 20 ~~vyL~v~~lg~-----~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye 93 (140)
T PF14909_consen 20 GDVYLSVCILGQ-----YKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYE 93 (140)
T ss_pred CCEEEEEEEccc-----EeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEe
Confidence 678999999876 7778766554444778999997211 1234557888888755443 56777776
Q ss_pred eCCCC
Q psy6105 139 IGSSF 143 (194)
Q Consensus 139 i~l~~ 143 (194)
-.+..
T Consensus 94 ~n~rD 98 (140)
T PF14909_consen 94 ENTRD 98 (140)
T ss_pred ccccc
Confidence 66654
No 285
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=31.04 E-value=96 Score=19.53 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCCCCceeEEEEeCCC
Q psy6105 117 SLIIKVIDYDRIGSDELMGCTAIGSS 142 (194)
Q Consensus 117 ~l~i~V~d~~~~~~~~~iG~~~i~l~ 142 (194)
...|++|+.+.+..|++|+....+-.
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~Td~~ 38 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKTDSD 38 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEECCC
Confidence 56799999998788999988777543
No 286
>KOG0694|consensus
Probab=29.41 E-value=24 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105 25 PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68 (194)
Q Consensus 25 ~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~ 68 (194)
....|||+.|.+.-. ....+.+.+.+..|.|+++|..++.
T Consensus 25 ~~al~~y~~v~vk~~----~~~~~~~~~~~~~~~~~~~F~~~v~ 64 (694)
T KOG0694|consen 25 LQALQPYLAVELKVK----QGAENMTKVELRIPELRETFHVEVV 64 (694)
T ss_pred hhhhhhhheecccee----ecccccCCCCCCCchhhhheeeeee
Confidence 345689988887643 2345666899999999999998866
No 287
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=27.20 E-value=2.1e+02 Score=21.38 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=25.3
Q ss_pred EeEEEeeEEecCCCCceeeeeEEEecCCCce
Q psy6105 42 RIRKKRTSVKKNSLNPFYNEALLFDVPANPY 72 (194)
Q Consensus 42 ~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpy 72 (194)
......|.+...+.+|.|+|+|...++.+..
T Consensus 52 ~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~ 82 (179)
T cd08696 52 FLTEAYTAVTYHNKSPDFYDEIKIKLPADLT 82 (179)
T ss_pred cceeEEEEEEEeCCCCcccceEEEEcCCCCC
Confidence 3457888999999999999999999885443
No 288
>PF13987 YedD: YedD-like protein
Probab=26.19 E-value=75 Score=21.42 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE---eEEEccC
Q psy6105 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT---QWYPLME 170 (194)
Q Consensus 130 ~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~---~W~~L~~ 170 (194)
+++-|+...|.-+...-...+|..++..|++-.. .||+...
T Consensus 25 SpeAiASLivt~~GdTLDCRQWQRVia~PGKL~~~~~d~yNVt~ 68 (111)
T PF13987_consen 25 SPEAIASLIVTKEGDTLDCRQWQRVIAKPGKLMLRDDDLYNVTR 68 (111)
T ss_pred ChhheeEEEEccCCCccchhhhheeeecccceeeecCCEEEecc
Confidence 5677788777766555567899999999999765 5887754
No 289
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.86 E-value=1.5e+02 Score=21.24 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=28.8
Q ss_pred CCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEe
Q psy6105 27 VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 66 (194)
Q Consensus 27 ~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~ 66 (194)
..|-|..|++++. .++|.......-=.|+|.|.|+
T Consensus 19 ~~~vyL~v~~lg~-----~~~T~~~ppvFPllfhek~~Fe 53 (140)
T PF14909_consen 19 KGDVYLSVCILGQ-----YKRTRCLPPVFPLLFHEKFRFE 53 (140)
T ss_pred CCCEEEEEEEccc-----EeecccCCCcCCeeEeeEEEeE
Confidence 4578999999987 7888887777777789999986
No 290
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=21.84 E-value=1.7e+02 Score=25.07 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=40.6
Q ss_pred ceEEEEEEecCC-----C-CCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEccCCCCCCc-cccCCCCcceee
Q psy6105 116 VSLIIKVIDYDR-----I-GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQI-PLSHSSNLPSSL 188 (194)
Q Consensus 116 ~~l~i~V~d~~~-----~-~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~~~~~-~~~~~~~~~~~~ 188 (194)
..|+|.||.-.. + ....+||.+.|+++.... ..+|-....+|..|-....+.. +.....+|.|+.
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~a--------e~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~ 166 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWA--------EGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRA 166 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccc--------cCCeeEEEccceecCCCCCCCCCCCcceEEEEEec
Confidence 479999997321 2 466899999999985421 2233334568999976654432 334555555554
No 291
>KOG4428|consensus
Probab=20.88 E-value=1.9e+02 Score=26.24 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCceeEEEEE-cCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEec
Q psy6105 69 ANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDY 125 (194)
Q Consensus 69 ~dpyv~v~l~-~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~ 125 (194)
++.|+.+.+. ++.-..+...|.++.++.||+|--...|.-....-.+..+.+.|||.
T Consensus 51 ~nt~va~sv~hp~~~~t~~s~tei~egt~~piFL~~~~f~~~~~in~~T~~kl~vydv 108 (813)
T KOG4428|consen 51 PNTFVAVSVTHPQAFWTKHSQTEIIEGTNNPIFLSSIAFFQDSLINQMTQVKLSVYDV 108 (813)
T ss_pred CCceEEEEeeccceeeeeccCceeeeccCCceeeeehhhhhhcchhhhhheeEEEEee
Confidence 6778888887 33335666778899999999997655553222222345788899984
No 292
>PRK10397 lipoprotein; Provisional
Probab=20.85 E-value=95 Score=21.86 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE---eEEEccC
Q psy6105 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT---QWYPLME 170 (194)
Q Consensus 130 ~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~---~W~~L~~ 170 (194)
+++-||...|.-+...-..++|..++..|++-.. .||+...
T Consensus 49 Sp~AiaSLivt~~GdtldCrqWqrvia~PGKlt~~~~~~~NVt~ 92 (137)
T PRK10397 49 SPEAIASLIVTKEGDTLDCRQWQRVIAVPGKLTLRSDDLTNVTV 92 (137)
T ss_pred CccceEEEEEecCCCEEeehhcceeeeccceeeeecCceEEeee
Confidence 4667787777666554556899999999999755 5887744
Done!