RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6105
(194 letters)
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 149 bits (377), Expect = 2e-46
Identities = 38/103 (36%), Positives = 64/103 (62%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYVKV L KRI KK+T VKK + N +NE +FD+P ++ ++S+ V+D +R
Sbjct: 50 LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER 109
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+E++G +G++ G G HW E+ D PR+ + +W+ L +
Sbjct: 110 GSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 147 bits (372), Expect = 2e-45
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++P+VK++L + + K +T +KK +LNP +NE +D+ S++ SL I V DYD
Sbjct: 57 YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI 116
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
S++ +G +G S G HW E L N + + +W+ L
Sbjct: 117 GKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 159
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 145 bits (367), Expect = 4e-45
Identities = 38/100 (38%), Positives = 64/100 (64%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + KR+ KK+T KK +LNP +NE+ FD+P + + ++II V+D D++
Sbjct: 37 SDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKL 96
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
++++G + HW +M+ PRQPV QW+ L
Sbjct: 97 SRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQL 136
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 144 bits (364), Expect = 2e-44
Identities = 45/111 (40%), Positives = 75/111 (67%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK++L+ GKR++KK+T++KKN+LNP+YNE+ F+VP + V +++ V+DYD+I
Sbjct: 46 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 105
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
G ++ +G +G + G HW +ML NPR+P+ QW+ L L+
Sbjct: 106 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLA 156
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 139 bits (351), Expect = 5e-41
Identities = 44/103 (42%), Positives = 73/103 (70%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYVK++L+ GKR++KK+T++KKN+LNP+YNE+ F+VP + V +++ V+DYD+
Sbjct: 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 229
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
IG ++ +G +G + G HW +ML NPR+P+ QW+ L
Sbjct: 230 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272
Score = 83.3 bits (206), Expect = 8e-20
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 40 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97
Query: 129 GSDELMGCTAIGSSFI--GIGRDHWLEMLDNPRQPVTQWYPLM 169
+++G + + + G + W ++ ++ + +
Sbjct: 98 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDIC 140
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 138 bits (350), Expect = 9e-41
Identities = 53/104 (50%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYVK L+ EG+R++K++TS+KKN+LNP YNEAL+FDV +V +V L I V+DYD
Sbjct: 172 FSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC 231
Query: 128 IGSDELMGCTAIG-SSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
IG +E++G +G + GR+HW EML NPR+PV W+ L+E
Sbjct: 232 IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275
Score = 83.7 bits (207), Expect = 7e-20
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+YL+ + K+ K +T V + +LNP +NE F VP + + L V D+DR
Sbjct: 41 SDPYVKIYLLPDRKK--KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+L+G + D+ LE+ + P W ++E
Sbjct: 99 SRHDLIGQVVL---------DNLLELAEQPP-DRPLWRDILE 130
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 102 bits (257), Expect = 2e-28
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
+PYVK+ L+ E R+R ++T + +P ++E F V + L++ V +
Sbjct: 46 TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRAS 104
Query: 128 IG-SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPG 174
L+GC + G ++ L P + ++ WY L+ G
Sbjct: 105 QSRQSGLIGCMSFG-----------VKSLLTPDKEISGWYYLLGEHLG 141
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 100 bits (252), Expect = 1e-27
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
+NPYVK YL+ + R K++TS+K++++NP Y+E L +++P S + +L V + R
Sbjct: 45 SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRF 104
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSH 180
G + +G I ++ + + PL + + H
Sbjct: 105 GRNTFLGEAEIQ-----------MDSWK-LDKKLDHCLPLHGKISAESEGHH 144
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 100 bits (251), Expect = 2e-27
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
PYVKVYL+ G I KK+T + + +L+P Y ++L+FD V +I DY R+
Sbjct: 52 PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ--GKVLQVIVWGDYGRM 109
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
MG I LE LD V WY L P +S
Sbjct: 110 DHKCFMGVAQIL-----------LEELD-LSSMVIGWYKLFPPSSLVDPTLAPLTRRASQ 157
Query: 189 SCLNGR 194
S L
Sbjct: 158 SSLESS 163
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 95.1 bits (237), Expect = 1e-25
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYVK+ L+ + K K++T +++LNP +NE+ F + S D L +++ D+DR
Sbjct: 36 LSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS-DKDRRLSVEIWDWDR 94
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQI 176
++ MG + G S + + P + WY L+ G+
Sbjct: 95 TTRNDFMGSLSFGVS-------------ELMKMPASGWYKLLNQEEGEY 130
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 93.6 bits (233), Expect = 8e-25
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYVK+ L+ + K K++T K SLNP +NE F + S+ D L +++ D+D
Sbjct: 51 LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDL 109
Query: 128 IGSDELMGCTAIG-SSFIGIGRDHWLEMLDN 157
++ MG + G S G D W ++L
Sbjct: 110 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQ 140
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 92.0 bits (229), Expect = 2e-24
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYV++YL+ + +R +++T V K +LNP ++++ F V V +L + V +
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 129 GSDE--LMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
S + L+G + L + + TQWY L E
Sbjct: 104 LSKDKGLLGKVLVA-----------LASEE-LAKGWTQWYDLTE 135
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 91.2 bits (227), Expect = 4e-24
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
NPYVK YL+ + + K++T + + + NP +NE L++ + L + V+ +
Sbjct: 39 DPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98
Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMET 171
+ + +G + L+ + + +WY L
Sbjct: 99 SLRENFFLGGITLP-----------LKDFN-LSKETVKWYQLTAA 131
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 91.3 bits (227), Expect = 5e-24
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 13/106 (12%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
+ YV+ + + +T++KK L+ + E L+ + + +L + + DR
Sbjct: 44 CDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF 102
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPG 174
+ G +G L+ P QW L + P
Sbjct: 103 SRHSVAGELRLG-----------LDGTSVP-LGAAQWGELKTSGPS 136
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 89.7 bits (223), Expect = 2e-23
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 54 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+++G + + +D +W L
Sbjct: 112 FSKHDIIGEFKVP-----------MNTVD-FGHVTEEWRDLQS 142
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 89.3 bits (222), Expect = 3e-23
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
P NPYVK+Y + + K+RT K +L P +N+ ++ V + L I + D
Sbjct: 41 PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 100
Query: 127 RIGSDE--LMGCTAIG-SSFIGIGRDHWLEMLDNPRQPVT 163
R+ +E +G I + + HW ++ + P +
Sbjct: 101 RVREEESEFLGEILIELETALLDDEPHWYKLQTHDSGPSS 140
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 89.0 bits (221), Expect = 5e-23
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 62 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 119
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+++G + + +D +W L
Sbjct: 120 FSKHDIIGEFKVP-----------MNTVD-FGHVTEEWRDLQS 150
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 88.2 bits (219), Expect = 1e-22
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 62 ALLFDVPANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLII 120
ALL ++V ++ C RT S +NE + ++ +L +
Sbjct: 57 ALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRV 116
Query: 121 KVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
V DR +E +G I L + + T+WY L+
Sbjct: 117 DVCTTDRSHLEECLGGAQIS-----------LAEVCRSGERSTRWYNLL 154
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 87.9 bits (218), Expect = 1e-22
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
+NPYVK+ L+ + K K+T VK+ + P + E F++P +L++ V+D+D+
Sbjct: 53 HSNPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK 110
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPG 174
++G ++ L +D + W L+ + P
Sbjct: 111 FSRHCVIGKVSVP-----------LCEVD-LVKGGHWWKALIPSGPS 145
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 87.0 bits (216), Expect = 2e-22
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
++PY+K+ ++ E K K +T V + +L+P ++E F +P + + +++L ++ +D
Sbjct: 43 TSDPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100
Query: 127 RIGSDELMGCTAIGSSFIGIGRD---HWLEMLDNPR 159
R D+++G I S I + E++ P
Sbjct: 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS 136
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 85.1 bits (211), Expect = 1e-21
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
A+PYVK++L+ + K RT +N+ NP +NE L + + ++ +L I V D D
Sbjct: 49 LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108
Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV 172
+ G +E +G T L+ L Q L +
Sbjct: 109 KFGHNEFIGETRFS-----------LKKLK-ANQRKNFNICLERVI 142
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 83.2 bits (206), Expect = 7e-21
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
++P+VK+YL+ + K K T VK+ +LNP +NE LF+ P V L ++V+DYD
Sbjct: 46 TSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103
Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVP 173
R ++ +G +I L +D Q T W L + P
Sbjct: 104 RFSRNDPIGEVSIP-----------LNKVD-LTQMQTFWKDLKPSGP 138
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 81.2 bits (201), Expect = 2e-20
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
P NPYVK+Y + + K+RT K +L P +N+ ++ V + L I + D
Sbjct: 38 PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 97
Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
R+ +E +G I + WY L
Sbjct: 98 RVREEESE---FLGEILIELETALL--------DDEPHWYKL 128
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 79.0 bits (195), Expect = 3e-19
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 69 ANPYVKVYLVCEGKRI---------RKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSL 118
++P+VKVYL+ ++ K+RT + SLNP +N+ +++ + + +L
Sbjct: 39 SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL 98
Query: 119 IIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+ V DYDR S++ +G I L +WYPL E
Sbjct: 99 EVTVWDYDRFSSNDFLGEVLID-----------LSSTS-HLDNTPRWYPLKE 138
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 74.4 bits (183), Expect = 2e-17
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG 129
P V V + KK+T N LNP +NE L FD+ + SL I V D++ IG
Sbjct: 29 PIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83
Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
++L+G + L+ L Q + Y L
Sbjct: 84 QNKLIGTATVA-----------LKDLT-GDQSRSLPYKL 110
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 73.5 bits (180), Expect = 6e-17
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 26/167 (15%)
Query: 2 SSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNE 61
SS + R ++ + ++ V++ E ++ R S++ + +
Sbjct: 3 SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRI---GEAVGLQPTRWSLRHSLFKKGHQ- 58
Query: 62 ALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIK 121
+PY+ V + ++R +TS K+ + P YNE +V L +
Sbjct: 59 ------LLDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCANVTDGGH----LELA 104
Query: 122 VIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
V +G D + + L W L
Sbjct: 105 VFHETPLGYDHFVANCTLQFQE--------LLRTTGASDTFEGWVDL 143
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 72.9 bits (179), Expect = 7e-17
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 71 PYVKVYLVCEGKR-IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
PYV+V L + +T K SLNP +NE +LF V L+ +V D +R+
Sbjct: 43 PYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVFDENRLT 99
Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM-----ETVPGQIPLSHS 181
D+ +G + + + + L V G + L +
Sbjct: 100 RDDFLGQVDVPLYPLPTENPRLERPY------TFKDFVLHPRSHKSRVKGYLRLKMT 150
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 72.0 bits (177), Expect = 1e-16
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
P+ K+ + G+ T KN+L+P +N+ V ++ S+ I V ++ +I
Sbjct: 28 PFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHYDLYVGKTD----SITISVWNHKKIHK 80
Query: 131 DE---LMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
+ +GC + S+ I +D + LD + + + V GQI +S
Sbjct: 81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD----TDAVRGQIVVS 128
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 71.0 bits (174), Expect = 3e-16
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 24/132 (18%)
Query: 37 VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSL 96
+CE ++ S++ +PY+ + + R +T+ K+ +
Sbjct: 12 ICEAVSLKPTAWSLRDAVGPRPQTFL------LDPYIALNV----DDSRIGQTATKQKTN 61
Query: 97 NPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLD 156
+P +++ + DV N + + V IG D+ + I E+L
Sbjct: 62 SPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFE----------ELLQ 107
Query: 157 NPRQPVTQWYPL 168
N + W L
Sbjct: 108 NGSRHFEDWIDL 119
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 71.1 bits (174), Expect = 7e-16
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 71 PYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
PYV+V L + +T K SLNP +NE +LF V ++ +V D +R+
Sbjct: 31 PYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEVFDENRLT 87
Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM-----ETVPGQIPLSHS 181
D+ +G + + + + L V G + L +
Sbjct: 88 RDDFLGQVDVPLYPLPTENPRMERPY------TFKDFVLHPRSHKSRVKGYLRLKMT 138
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 68.9 bits (169), Expect = 1e-15
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
PYV++++ +KRT N +NP +NE F + N +V L I ++D +
Sbjct: 29 PYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFILD-PNQENV-LEITLMDANY-VM 83
Query: 131 DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
DE +G + + + + + + +S
Sbjct: 84 DETLGTATFT-----------VSSMK-VGEKKEVPFIFNQVTEMVLEMS 120
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 67.7 bits (166), Expect = 5e-15
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
P+ + L G + +T +LNP +N+ F + +++DV L + V D D
Sbjct: 36 PFCLLEL---GND--RLQTHTVYKNLNPEWNKVFTFPIK--DIHDV-LEVTVFDEDGDKP 87
Query: 131 DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
+ +G AI I G+ + V + L + G I L
Sbjct: 88 PDFLGKVAIPLLSIRDGQPNCY---------VLKNKDLEQAFKGVIYLE 127
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 66.6 bits (163), Expect = 1e-14
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
PYV++ + +K + P +NE +F V L K+ D D
Sbjct: 33 PYVQLTC---RTQDQKSNV-AEGMGTTPEWNETFIFTVSEGT---TELKAKIFDKDVGTE 85
Query: 131 DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM--ETVPGQIPLSHS 181
D+ +G I LE + Y ++ E G+I ++ S
Sbjct: 86 DDAVGEATIP-----------LEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 63.7 bits (155), Expect = 3e-13
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
+PYV+V + +G+ K+T N+ +P + + L V + L +V + +
Sbjct: 58 SPYVEVTV--DGQ---SKKTEKCNNTNSPKWKQPLTVIVTPVSK----LHFRVWSHQTLK 108
Query: 130 SDELMGCTAIGSSFIGIGRDHWLEML 155
SD L+G A+ + LE +
Sbjct: 109 SDVLLGTAALDIYETLKSNNMKLEEV 134
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 58.7 bits (142), Expect = 1e-11
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
PYV V + GK KKRT +LNP + E F+ S + ++V+D D
Sbjct: 40 PYVTVQV---GKT--KKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDEDDDIK 91
Query: 131 DELMGCTAIGSS-FIGIGRDHWLEMLDNPRQPVTQWYPL 168
+ S F+G +E+ + + WY L
Sbjct: 92 SRVKQRFKRESDDFLGQTI---IEVRTLSGE-MDVWYNL 126
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 50.3 bits (119), Expect = 8e-08
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
+PYV++++ +KRT N +NP +NE F + + L I ++D + +
Sbjct: 42 PDPYVELFIS--TTPDSRKRTRHFNNDINPVWNETFEFILD--PNQENVLEITLMDANYV 97
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
DE +G S + +G + + N + L
Sbjct: 98 -MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 137
Score = 44.5 bits (104), Expect = 9e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 26 SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
DPYV++++ +KRT N +NP +NE F +
Sbjct: 40 DTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNETFEFILD 80
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 46.9 bits (111), Expect = 3e-07
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNP-FYNEALLFDVPASNVNDVSLIIKVIDYDR 127
A+ KV R + + V +N + ++E + V +S + L I++ +Y +
Sbjct: 37 ADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91
Query: 128 IGSDELMGCTAI 139
+ S++L+G +
Sbjct: 92 VFSNKLIGTFRM 103
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 48.4 bits (114), Expect = 4e-07
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
+ Y+KV+ G + + RT V N+ NP + + + F+ + L ++V D D
Sbjct: 415 DAYLKVFF---GGQ--EFRTGVVWNNNNPRWTDKMDFENVLLSTGGP-LRVQVWDADYGW 468
Query: 130 SDELMGCTAI 139
D+L+G
Sbjct: 469 DDDLLGSCDR 478
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 46.1 bits (108), Expect = 3e-06
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 66 DVPANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLI-IKVI 123
+ +P V V + ++ + N NP ++ F+V V D++L+ V
Sbjct: 517 NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEV---TVPDLALVRFMVE 573
Query: 124 DYDRIGSDELMGCTAI 139
DYD ++ +G + I
Sbjct: 574 DYDSSSKNDFIGQSTI 589
Score = 35.7 bits (81), Expect = 0.008
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 21 NRSIPSVADPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVC 79
N++ S+ DP V V + ++ + N NP ++ F+V V +
Sbjct: 513 NKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV 572
Query: 80 E-----GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKV 122
E K ++++ NSL Y L +L +K+
Sbjct: 573 EDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKI 620
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 36.5 bits (84), Expect = 0.001
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 20/101 (19%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
N YV + + K T + S P + + +F++ D+ L ++V +
Sbjct: 22 KFNTYVTLKV---QNV--KSTTIAVRGS-QPSWEQDFMFEINRL---DLGLTVEVWNKGL 72
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
I D ++G I + + + +W L
Sbjct: 73 IW-DTMVGTVWIPLR----------TIRQSNEEGPGEWLTL 102
Score = 27.3 bits (60), Expect = 2.2
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
+ YV + + K T + S P + + +F++
Sbjct: 24 NTYVTLKV---QNV--KSTTIAVRGS-QPSWEQDFMFEIN 57
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 34.6 bits (79), Expect = 0.009
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 20/101 (19%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
N YV + + + T++ P + + +F++ D+ L ++V +
Sbjct: 31 KFNTYVTLKV---QNV---ESTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKGL 81
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
I D ++G I I + +W L
Sbjct: 82 I-WDTMVGTVWIPLRTI--------RQSNEEGPG--EWLTL 111
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 35.0 bits (79), Expect = 0.012
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 44 RKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLV---CEGKRIRKKRTSVKKNSLNPFY 100
+ V + L + YV+V L + KR + + S NS+NP +
Sbjct: 670 DRIDVVVATTLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVW 729
Query: 101 NEALLFDVPASNVNDVSLIIKVIDYD 126
E SL + V++
Sbjct: 730 KEEPFVFEKILMPELASLRVAVMEEG 755
Score = 30.3 bits (67), Expect = 0.41
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 26 SVADPYVKVYLV---CEGKRIRKKRTSVKKNSLNPFYNE-ALLFDVPANP 71
YV+V L + KR + + S NS+NP + E +F+ P
Sbjct: 693 RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP 742
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.1 bits (72), Expect = 0.093
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 39 EGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNP 98
E R K ++ +A A Y Y E K + +KR + K +
Sbjct: 17 EKLRKAKAEQRKASSAQMK-QRKAEWI-SKAQKYAAEYEAAEKKIVDEKRKARKTGAFYV 74
Query: 99 FYNEALLFDVPASNVNDVSLIIKVI 123
+ F + VN + +K +
Sbjct: 75 PAEAKVAFAIRIRGVNQLHPDVKRV 99
Score = 29.0 bits (64), Expect = 0.84
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKV----YLVCEGKR 83
A Y Y E K + +KR + K + + F + ++ V R
Sbjct: 45 AQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFR 104
Query: 84 IRKKRTSV 91
+R+
Sbjct: 105 LRQLHNGA 112
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 31.8 bits (71), Expect = 0.12
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 64 LFDVPANPYVKVYLVCEGKRIRKKRTS---VKKNSLNPFYNEALLFDVPASNVNDVSLII 120
L D + YV+V + +K+ ++ N ++P+Y+E + + + I
Sbjct: 662 LSDKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRI 721
Query: 121 KVIDYD 126
V + +
Sbjct: 722 IVSEEN 727
Score = 29.5 bits (65), Expect = 0.79
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 25 PSVADPYVKVYLVCEGKRIRKKRTS---VKKNSLNPFYNEALLFDVP 68
YV+V + +K+ ++ N ++P+Y+E +
Sbjct: 664 DKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKK 710
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 30.4 bits (67), Expect = 0.47
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 26 SVADPYVKVYLV-CEGKRIRKKRTSVKK-NSLNPFYNE-ALLFDVPANPYVKV--YLVCE 80
YV+V + RK RT + NS NP ++E F P + E
Sbjct: 740 RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799
Query: 81 GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKV 122
+ +++ Y+ L + + +L+I
Sbjct: 800 EGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYT 841
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 29.4 bits (65), Expect = 0.66
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
Y K Y E I+ KR + S L+F V +N + + +
Sbjct: 48 NAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKV----- 102
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV 172
+L+ T I S LE+L V YP T+
Sbjct: 103 --LQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTI 144
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 29.4 bits (66), Expect = 0.66
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 64 LFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVI 123
L D +P K L G+ K + + A+ PA+ D L +K +
Sbjct: 285 LTDTTPSPERKAALEALGRAPDMKTATPEAVKAYADKRAAIDKAHPAARG-DFDLYMKSM 343
Query: 124 DY--DRIGSDELMGCTAIGSSFIGIGRDHWLE 153
+ G +G+ + G G E
Sbjct: 344 LHVLKVAGPK----GVCVGADWDGGGGMDGFE 371
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.90
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 16 RPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKV 75
+ NR +P VA P+ LV I K + KN++ F + + +P V
Sbjct: 413 KLKFSNRFLP-VASPFHSHLLVPASDLINK---DLVKNNV-SFNAKDI--QIP------V 459
Query: 76 YLVCEGKRIRKKRTSVKKN 94
Y +G +R S+ +
Sbjct: 460 YDTFDGSDLRVLSGSISER 478
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.8
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 13/37 (35%)
Query: 80 EGKRIRKKRTSVKKNSLNPFY--NEALLFDVPASNVN 114
E + ++K + S+K Y + A PA +
Sbjct: 18 EKQALKKLQASLK------LYADDSA-----PALAIK 43
Score = 25.7 bits (55), Expect = 7.9
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 13/33 (39%)
Query: 39 EGKRIRKKRTSVKKNSLNPFY--NEALLFDVPA 69
E + ++K + S+K Y + A PA
Sbjct: 18 EKQALKKLQASLK------LYADDSA-----PA 39
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 28.3 bits (62), Expect = 2.1
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 72 YVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDY----D 126
YV+ + G+ + + + NP +NE L +D+ ++ L + +
Sbjct: 378 YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKG 437
Query: 127 RIGSDELMGCTAI 139
+ I
Sbjct: 438 AKEEHCPLAWGNI 450
Score = 26.4 bits (57), Expect = 7.8
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 31 YVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
YV+ + G+ + + + NP +NE L +D+
Sbjct: 378 YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIY 415
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 27.9 bits (61), Expect = 2.9
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 72 YVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNV 113
+V+ + + + ++RTS K + +N L F + ++
Sbjct: 241 FVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDL 282
Score = 27.1 bits (59), Expect = 5.0
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 31 YVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF-----DVPANPYVKVYLVCEGKRIR 85
+V+ + + + ++RTS K + +N L F D+P + + + C K
Sbjct: 241 FVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPAL 300
Query: 86 KKRTSVKKNSLNPFYNEALL 105
+TS + S LL
Sbjct: 301 SGKTSAEMPSPESKGKAQLL 320
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.8
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 18/102 (17%)
Query: 45 KKRTSVKK--NSLNP-----FYNEALLF--DVPANPYVKVYLVCEGKRIR--------KK 87
K T ++ N L P ++ +F + + + + K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 88 RTSVKKNSLNPFYN-EALLFDVPASNVNDVSLIIKVIDYDRI 128
+ V+K + ++ ++ N+ +L ++D+ I
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 26.8 bits (60), Expect = 5.6
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 150 HWLEMLDNPRQPV---TQWY 166
W EM++ P Q + Q Y
Sbjct: 403 QWKEMIEEPGQRISRPRQLY 422
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 26.1 bits (58), Expect = 9.2
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 150 HWLEMLDNPRQPV---TQWY 166
W+EM+++P Q + Q Y
Sbjct: 400 QWIEMVNDPAQKIGRPRQLY 419
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 26.0 bits (56), Expect = 9.8
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 15/132 (11%)
Query: 41 KRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFY 100
+++ ++ +N+ + A Y Y + + ++ KR + K
Sbjct: 30 QKVAAEKIKAAENTKVIY--------ARAEQYAGEYEAQDKELVQLKREARMKGGFYVSP 81
Query: 101 NEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQ 160
LF V +N + K I L+ I + + ML
Sbjct: 82 EAKPLFVVRIRGINAMHPKTKKILQ-------LLRLRQIFNGVFLKVNKATINMLRRVEP 134
Query: 161 PVTQWYPLMETV 172
VT YP +++V
Sbjct: 135 YVTYGYPNLKSV 146
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus
thrmophilus, translation, amino acid, structural
genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1
PDB: 1wk9_A*
Length = 147
Score = 25.5 bits (57), Expect = 9.9
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 21 NRSIPSVADPYV 32
IP +ADP V
Sbjct: 58 EVWIPILADPAV 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.410
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,992,062
Number of extensions: 171866
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 111
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)