RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6105
(194 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 114 bits (285), Expect = 3e-33
Identities = 38/101 (37%), Positives = 63/101 (62%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
+PYVKV L KRI KK+T VKK + N +NE +FD+P ++ ++S+ V+D +R
Sbjct: 37 DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS 96
Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+E++G +G++ G G HW E+ D PR+ + +W+ L +
Sbjct: 97 RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 104 bits (261), Expect = 2e-29
Identities = 44/102 (43%), Positives = 73/102 (71%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK++L+ GKR++KK+T++KKN+LNP+YNE+ F+VP + V +++ V+DYD+I
Sbjct: 46 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 105
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
G ++ +G +G + G HW +ML NPR+P+ QW+ L
Sbjct: 106 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 102 bits (254), Expect = 1e-28
Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
+PYVK L+ EG+R++K++TS+KKN+LNP YNEAL+FDV +V +V L I V+DYD IG
Sbjct: 42 DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG 101
Query: 130 SDELMGCTAIG-SSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+E++G +G + GR+HW EML NPR+PV W+ L+E
Sbjct: 102 HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 143
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 99 bits (248), Expect = 6e-28
Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++P+VK++L + + K +T +KK +LNP +NE +D+ S++ SL I V DYD
Sbjct: 36 SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 95
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
S++ +G +G S G HW E L N + + +W+ L
Sbjct: 96 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 135
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 66.6 bits (162), Expect = 4e-15
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVK+ L+ + K K++T K SLNP +NE F + + D L +++ D+D
Sbjct: 36 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK-ESDKDRRLSVEIWDWDLT 94
Query: 129 GSDELMGCTAIG-SSFIGIGRDHWLEMLDNP 158
++ MG + G S G D W ++L
Sbjct: 95 SRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 65.1 bits (158), Expect = 1e-14
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
P NPYVK+Y + + K+RT K +L P +N+ ++ V + L I + D
Sbjct: 34 PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 93
Query: 127 RIG--SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
R+ E +G I + WY L
Sbjct: 94 RVREEESEFLGEILIE-------------LETALLDDEPHWYKL 124
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 65.6 bits (159), Expect = 2e-14
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++PYVKV+L+ + K+ K T V + +LNP +NE F VP S + +L++ V D+DR
Sbjct: 55 SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
+++G + + +D +W L
Sbjct: 113 SKHDIIGEFKVP-----------MNTVD-FGHVTEEWRDL 140
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 58.2 bits (140), Expect = 7e-12
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEAL-LFDVPASNVNDVSLIIKVIDYD 126
++PY+K+ ++ E K K +T V + +L+P ++E + +P + + +++L ++ +D
Sbjct: 43 TSDPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100
Query: 127 RIGSDELMGCTAIGSSFIGIGRD---HWLEMLDNP 158
R D+++G I S I + E++ P
Sbjct: 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 55.3 bits (132), Expect = 7e-11
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 79 CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTA 138
R +K +T V + +LNP +NE F VP + + L V D+DR +L+G
Sbjct: 47 LLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV 106
Query: 139 IGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
+ D+ LE+ + P W ++E
Sbjct: 107 L---------DNLLELAEQPPD-RPLWRDILE 128
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 53.4 bits (127), Expect = 4e-10
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
Query: 68 PANPYVKVYLVCEGKRIR---------KKRTSVKKNSLNPFYNEALLFD-VPASNVNDVS 117
++P+VKVYL+ ++ K+RT + SLNP +N+ +++ + + +
Sbjct: 38 YSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT 97
Query: 118 LIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
L + V DYDR S++ +G I L +WYPL
Sbjct: 98 LEVTVWDYDRFSSNDFLGEVLID-----------LSSTS-HLDNTPRWYPL 136
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 51.3 bits (122), Expect = 2e-09
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTS-VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
+P V V + G+ ++T+ + N NP ++ F+V + + + V DYD
Sbjct: 27 VDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEV--TVPDLALVRFMVEDYDS 84
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLD 156
++ +G + I + + G + +L
Sbjct: 85 SSKNDFIGQSTIPWNSLKQG-YRHVHLLS 112
Score = 42.8 bits (100), Expect = 2e-06
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 21 NRSIPSVADPYVKVYLVCEGKRIRKKRTS-VKKNSLNPFYNEALLFDVPANPYVKVYLVC 79
N++ S+ DP V V + G+ ++T+ + N NP ++ F+V V +
Sbjct: 20 NKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV 79
Query: 80 EGKRIRKK-----RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKV 122
E K ++++ NSL Y L +L +K+
Sbjct: 80 EDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKI 127
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 51.3 bits (122), Expect = 2e-09
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 15/101 (14%)
Query: 68 PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
+ P+ V + R K KK ++ P + + V + I ++
Sbjct: 23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV----IQIVLMRAAE 78
Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
E+ +G E W L
Sbjct: 79 DPMSEVT-----------VGVSVLAERCKKNNGKAEFWLDL 108
Score = 49.0 bits (116), Expect = 1e-08
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYL 77
P+ V + R K KK ++ P + + +++ L
Sbjct: 25 QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVL 73
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 50.7 bits (120), Expect = 4e-09
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
+ YV+ + + +T++KK L+ + E L+ + + +L + + DR
Sbjct: 45 DCYVQGSVAN-RTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS 103
Query: 130 SDELMGCTAIGSSFIGIGR--DHWLEMLDNPRQPVT 163
+ G +G + W E+ P +
Sbjct: 104 RHSVAGELRLGLDGTSVPLGAAQWGELK--TSGPSS 137
Score = 33.7 bits (76), Expect = 0.005
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 21 NRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPY 72
+ D YV+ + + +T++KK L+ + E L+ +
Sbjct: 37 TSNHDGGCDCYVQGSVAN-RTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 50.3 bits (119), Expect = 6e-09
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 25/138 (18%)
Query: 31 YVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTS 90
+K+ +CE ++ S++ + P + Y+ R +T+
Sbjct: 7 LLKIK-ICEAVSLKPTAWSLRDA----------VGPRPQTFLLDPYIALNVDDSRIGQTA 55
Query: 91 VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDH 150
K+ + +P +++ + DV + V IG D+ + I
Sbjct: 56 TKQKTNSPAWHDEFVTDVCNGRKI----ELAVFHDAPIGYDDFVANCTI----------Q 101
Query: 151 WLEMLDNPRQPVTQWYPL 168
+ E+L N + W L
Sbjct: 102 FEELLQNGSRHFEDWIDL 119
Score = 39.9 bits (92), Expect = 3e-05
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 11 ADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN 70
R +G R + DPY+ R +T+ K+ + +P +++ + DV
Sbjct: 21 TAWSLRDAVGPRPQTFLLDPYIA----LNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG 76
Query: 71 PYVKVYLVCEGKR 83
+++ + +
Sbjct: 77 RKIELAVFHDAPI 89
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 49.3 bits (117), Expect = 1e-08
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
+PYV++++ +KRT N +NP +NE F+ + L I ++D +
Sbjct: 27 PDPYVELFIS--TTPDSRKRTRHFNNDINPVWNET--FEFILDPNQENVLEITLMDANY- 81
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
DE +G S + + + + + +S
Sbjct: 82 VMDETLGTATFTVSSM------------KVGEKKEVPFIFNQVTEMVLEMS 120
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 45.7 bits (108), Expect = 2e-07
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 64 LFDVPANPYVKVYLV---CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLII 120
L + YV+V L + KR + + S NS+NP + E SL +
Sbjct: 13 LSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRV 72
Query: 121 KVIDYDR 127
V++
Sbjct: 73 AVMEEGN 79
Score = 38.8 bits (90), Expect = 6e-05
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 25 PSVADPYVKVYLV---CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLV 78
YV+V L + KR + + S NS+NP + E L
Sbjct: 15 ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR 71
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 44.7 bits (105), Expect = 6e-07
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
+PYV++ +K + P +NE +F V L K+ D D
Sbjct: 31 MDPYVQLTCRT----QDQKSNVAEGMGTTPEWNETFIFTVSEG---TTELKAKIFDKDVG 83
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM--ETVPGQIPLS 179
D+ +G I LE + Y ++ E G+I ++
Sbjct: 84 TEDDAVGEATIP-----------LEPVFVEGSIPPTAYNVVKDEEYKGEIWVA 125
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 37.0 bits (85), Expect = 3e-04
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
+PYV+V + + K+T N+ +P + + L V + +V + +
Sbjct: 28 SPYVEVTVDG-----QSKKTEKCNNTNSPKWKQPLTVIVTPVSKL----HFRVWSHQTLK 78
Query: 130 SDELMGCTAI 139
SD L+G A+
Sbjct: 79 SDVLLGTAAL 88
Score = 26.6 bits (58), Expect = 1.4
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 21 NRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCE 80
N+ PYV+V + + K+T N+ +P + + L V + +
Sbjct: 20 NKKNWFGPSPYVEVTVDG-----QSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSH 74
Query: 81 GK 82
Sbjct: 75 QT 76
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 36.3 bits (83), Expect = 5e-04
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
N YV + K K T++ P + + +F++ N D+ L ++V + I
Sbjct: 20 FNTYVTL------KVQNVKSTTIAVRGSQPSWEQDFMFEI---NRLDLGLTVEVWNKGLI 70
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
D ++G I + + + +W L
Sbjct: 71 -WDTMVGTVWI---------PLR-TIRQSNEEGPGEWLTL 99
Score = 27.4 bits (60), Expect = 0.60
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK 87
+ YV + K K T++ P + + +F++ + + + K +
Sbjct: 20 FNTYVTL------KVQNVKSTTIAVRGSQPSWEQDFMFEIN-RLDLGLTVEVWNKGLIWD 72
Query: 88 R 88
Sbjct: 73 T 73
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 36.3 bits (83), Expect = 5e-04
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 17/111 (15%)
Query: 69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
++P+ + + +T +LNP +N+ F + L + V D D
Sbjct: 27 SDPFCLLE-----LGNDRLQTHTVYKNLNPEWNKVFTFPI---KDIHDVLEVTVFDEDGD 78
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
+ +G AI I G+ + + + L + G I L
Sbjct: 79 KPPDFLGKVAIPLLSIRDGQPNCYVL---------KNKDLEQAFKGVIYLE 120
>d1e7ua2 b.7.1.1 (A:351-524) Phoshoinositide 3-kinase (PI3K) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 174
Score = 29.6 bits (66), Expect = 0.18
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 12 DNYCRPTIGNRSIPSV-ADPYVKVYLVCE----GKRIRKKRTSVKKNSLNPFYNEALLFD 66
D R I IP + + V++ + + ++RTS K + +N L F
Sbjct: 8 DRKFRVKIRGIDIPVLPRTADLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFS 67
Query: 67 V-----PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALL 105
+ P + + + C K +TS + S LL
Sbjct: 68 IKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKAQLL 111
Score = 28.8 bits (64), Expect = 0.28
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 67 VPANPYVKVYLVCE----GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNV 113
+P + V++ + + ++RTS K + +N L F + ++
Sbjct: 23 LPRTADLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDL 73
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and
IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.9 bits (62), Expect = 0.37
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 150 HWLEMLDNPRQ-PVTQWYPLMETVPGQIPLSHSSNLPSS 187
W + D R VT + E + + S ++P S
Sbjct: 22 RWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWS 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.410
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 753,220
Number of extensions: 34873
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 44
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)