BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6106
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 200 bits (508), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/122 (80%), Positives = 105/122 (86%), Gaps = 7/122 (5%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
VGREFVRQYYTLLN+AP HLHRFY+ NS +IHG E+K VVGQ +IH IQQLNF
Sbjct: 6 VGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQREIHNRIQQLNF 58
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 153
DCHAKI QVD+QATLGNGVVVQV+GELSN GQPMRRFTQTFVLAAQSPKKYYVHNDIFR
Sbjct: 59 NDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 118
Query: 154 YQ 155
YQ
Sbjct: 119 YQ 120
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 162 bits (410), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 99/137 (72%), Gaps = 3/137 (2%)
Query: 22 TLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQ 81
+++ + P+ L VGREFVRQYYTLLNQAP LHRFY +NS ++HGGLD+ + V GQ
Sbjct: 1 SMVMEKPSPL-LVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQ 59
Query: 82 EQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQS 141
++IH + NF +CH KIR VD+ ATL +GVVVQV G LSN Q +RRF QTFVLA +
Sbjct: 60 KEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEG 119
Query: 142 --PKKYYVHNDIFRYQD 156
K+YVHNDIFRYQD
Sbjct: 120 SVANKFYVHNDIFRYQD 136
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 30 HLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 89
++G++FV+ YY L Y S+ E Q GQ I
Sbjct: 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTW--------EDTQFQGQANIVNKFN 61
Query: 90 QLNFRDCHAKIRQVDSQATLGNGVVVQVSGELS-NGGQPMRRFTQTFVLAAQSPKKYYVH 148
LNF+ +I +VD Q + NG +V V+G++ + GQP+ +F+Q F L + +
Sbjct: 62 SLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPL-KFSQVFNLMPSGNGGFMIF 120
Query: 149 NDIFR 153
ND+FR
Sbjct: 121 NDLFR 125
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 140
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL- 91
R EFV YYT +++ L R Y + + G V GQE + E + L
Sbjct: 15 RAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEMLP 66
Query: 92 --NFRDCHAKIRQVDSQATLG-NGVVVQVSGELSNGGQPMRRFTQTFVLAAQ-SPKK--Y 145
F+ + V +AT V+V + G + G R F Q F+L AQ SP +
Sbjct: 67 SSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVW 126
Query: 146 YVHNDIFRYQDF 157
+ +D FR+QD+
Sbjct: 127 KIASDCFRFQDW 138
>pdb|1ZX2|A Chain A, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
pdb|1ZX2|B Chain B, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
Length = 147
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 38 FVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETK-------QVVGQEQIHEHIQQ 90
F++ YY + P+ L FY+ + H + + K +V G+E I++ +
Sbjct: 13 FLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSR 72
Query: 91 --LNFRDCHAKIRQVDSQAT--LGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYY 146
R K+ +D Q T L +++ +GE+ G P+ +F QTF+L S +
Sbjct: 73 NDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTF 132
Query: 147 -VHNDIFRY 154
+ NDI R+
Sbjct: 133 DITNDIIRF 141
>pdb|2QIY|A Chain A, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
pdb|2QIY|B Chain B, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
Length = 154
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 38 FVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETK-------QVVGQEQIHEHIQQ 90
F++ YY + P+ L FY+ + H + + K +V G+E I++ +
Sbjct: 18 FLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSR 77
Query: 91 --LNFRDCHAKIRQVDSQAT--LGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYY 146
R K+ +D Q T L +++ +GE+ G P+ +F QTF+L S +
Sbjct: 78 NDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTF 137
Query: 147 -VHNDIFRY 154
+ NDI R+
Sbjct: 138 DITNDIIRF 146
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F++ YY L + L Y + S E +Q G+ I E + L
Sbjct: 9 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ A I D Q T + ++ V G+L P+ F Q F+L + + ND+F
Sbjct: 61 FQKIQASITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDMF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 31 LHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 90
+ + + F + YY + + L Y S+ ET Q+ G + I E +
Sbjct: 5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF--------ETSQLQGAKDIVEKLVS 56
Query: 91 LNFRDCHAKIRQVDSQATLGNG-VVVQVSGEL-SNGGQPMRRFTQTFVLAAQSPKKYYVH 148
L F+ +I +D+Q G V+V ++G+L + Q +RF+Q F L YYV
Sbjct: 57 LPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDG-NSYYVF 115
Query: 149 NDIFR 153
NDIFR
Sbjct: 116 NDIFR 120
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F+ YY L + L Y + S E +Q G+ I E + L
Sbjct: 9 QIGSSFINHYYQLFDNDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ +V G+L P+ F Q F+L + + ND+F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISEVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDMF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F++ YY L + L Y + S E +Q G+ I E + L
Sbjct: 9 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + + ND+F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDMF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F++ YY L + L Y + S E +Q G+ I E + L
Sbjct: 8 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 59
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + + ND+F
Sbjct: 60 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDMF 118
Query: 153 R 153
R
Sbjct: 119 R 119
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F++ YY L + L Y + S E +Q G+ I E + L
Sbjct: 9 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + + ND+F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKANENPIMGFHQMFLLKNIN-DAWVCTNDMF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F++ YY L + L Y + S G +Q G+ I E + L
Sbjct: 9 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKG--------QQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + + ND+F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDMF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F+ YY L + L Y + S E +Q G+ I E + L
Sbjct: 9 QIGSSFINHYYQLFDNDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + + ND+F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQEFLLKNIN-DAWVCTNDMF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F++ YY L L Y + S E +Q G+ I E + L
Sbjct: 9 QIGSSFIQHYYQLFANDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + + ND+F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDMF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 154
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 24 LNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQ 83
+N+ L ++F+ YY ++++ + Y++ S + G + G +
Sbjct: 26 INKEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNG--------NPINGYDS 77
Query: 84 IHEHIQQLNFRDCHAKIRQVDSQ-------ATLGNGVVVQVSGELSNGGQPMRRFTQTFV 136
I E ++ L I+ +D+Q + G+++ V+G ++ G R FTQT +
Sbjct: 78 ICEFMKAL--PSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLL 135
Query: 137 LAAQSPKKYYVHNDIFRYQD 156
L + KY V +D FRY D
Sbjct: 136 LGVEDG-KYKVKSDRFRYVD 154
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F+ YY L + L Y + S E +Q G+ I E + L
Sbjct: 9 QIGSSFINHYYQLFDNDRTQLGAIYIDASCL--------TWEGQQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + + ND F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDEF 119
Query: 153 R 153
R
Sbjct: 120 R 120
>pdb|1P5Y|A Chain A, The Structures Of Host Range Controlling Regions Of The
Capsids Of Canine And Feline Parvoviruses And Mutants
Length = 548
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 19 QYYTLLNQAPAHLHRVGREF 38
Q+YT+ N P HL R G EF
Sbjct: 206 QFYTIENSVPVHLLRTGDEF 225
>pdb|1C8E|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8F|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8G|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
Length = 548
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 19 QYYTLLNQAPAHLHRVGREF 38
Q+YT+ N P HL R G EF
Sbjct: 206 QFYTIENSVPVHLLRTGDEF 225
>pdb|1P5W|A Chain A, The Structures Of Host Range Controlling Regions Of The
Capsids Of Canine And Feline Parvoviruses And Mutants
Length = 548
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 19 QYYTLLNQAPAHLHRVGREF 38
Q+YT+ N P HL R G EF
Sbjct: 206 QFYTIENSVPVHLLRTGDEF 225
>pdb|2CAS|A Chain A, The Canine Parvovirus Empty Capsid Structure
Length = 548
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 19 QYYTLLNQAPAHLHRVGREF 38
Q+YT+ N P HL R G EF
Sbjct: 206 QFYTIENSVPVHLLRTGDEF 225
>pdb|1FPV|A Chain A, Structure Determination Of Feline Panleukopenia Virus
Empty Particles
Length = 584
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 19 QYYTLLNQAPAHLHRVGREF 38
Q+YT+ N P HL R G EF
Sbjct: 242 QFYTIENSVPVHLLRTGDEF 261
>pdb|4DPV|Z Chain Z, ParvovirusDNA COMPLEX
pdb|1C8H|A Chain A, Canine Parvovirus Strain D Empty Capsid Structure At Ph
5.5
Length = 584
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 19 QYYTLLNQAPAHLHRVGREF 38
Q+YT+ N P HL R G EF
Sbjct: 242 QFYTIENSVPVHLLRTGDEF 261
>pdb|1IJS|P Chain P, Cpv (Strain D) Mutant A300d, Complex (Viral CoatDNA), VP2,
PH7.5, T4 Degrees C
pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid Structure
Length = 584
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 19 QYYTLLNQAPAHLHRVGREF 38
Q+YT+ N P HL R G EF
Sbjct: 242 QFYTIENSVPVHLLRTGDEF 261
>pdb|3M3I|A Chain A, Hypothetical Protein From Leishmania Major
pdb|3M3I|B Chain B, Hypothetical Protein From Leishmania Major
pdb|3M3I|C Chain C, Hypothetical Protein From Leishmania Major
pdb|3M3I|D Chain D, Hypothetical Protein From Leishmania Major
pdb|3M3I|E Chain E, Hypothetical Protein From Leishmania Major
pdb|3M3I|F Chain F, Hypothetical Protein From Leishmania Major
pdb|3M3I|G Chain G, Hypothetical Protein From Leishmania Major
pdb|3M3I|H Chain H, Hypothetical Protein From Leishmania Major
Length = 225
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 42 YYTLLNQAPAHLHRFYSENSLFIHGG 67
Y+ ++P+HLHR S+ + H G
Sbjct: 64 YFLCTPESPSHLHRLCSDETWMYHAG 89
>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
Length = 579
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 20 YYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSL 62
+YT+ N P HL R G EF Y + H + + SL
Sbjct: 244 FYTIENAVPIHLLRTGDEFSTGIYHFDTKPLKLTHSWQTNRSL 286
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 35 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 92 NFRDCHAKIRQ 102
RDC + R
Sbjct: 251 FERDCSVQRRH 261
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 35 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 92 NFRDCHAKIRQ 102
RDC + R
Sbjct: 251 FERDCSVQRRH 261
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 35 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 92 NFRDCHAKIRQ 102
RDC + R
Sbjct: 251 FERDCSVQRRH 261
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 35 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 92 NFRDCHAKIRQ 102
RDC + R
Sbjct: 251 FERDCSVQRRH 261
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 35 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 170 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 227
Query: 92 NFRDCHAKIRQ 102
RDC + R
Sbjct: 228 FERDCSVQRRH 238
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 35 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 170 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 227
Query: 92 NFRDCHAKIRQ 102
RDC + R
Sbjct: 228 FERDCSVQRRH 238
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 35 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 170 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 227
Query: 92 NFRDCHAKIRQ 102
RDC + R
Sbjct: 228 FERDCSVQRRH 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,350,449
Number of Sequences: 62578
Number of extensions: 209257
Number of successful extensions: 467
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 44
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)