Query psy6106
Match_columns 177
No_of_seqs 107 out of 721
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:45:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2104|consensus 100.0 3E-35 6.4E-40 214.9 12.3 120 6-155 3-122 (126)
2 cd00780 NTF2 Nuclear transport 100.0 1.8E-33 3.9E-38 208.6 15.9 118 31-156 2-119 (119)
3 KOG0116|consensus 100.0 8.9E-32 1.9E-36 236.3 13.4 128 6-159 10-137 (419)
4 PF02136 NTF2: Nuclear transpo 100.0 2.2E-28 4.8E-33 179.5 13.4 112 34-154 1-118 (118)
5 KOG4353|consensus 100.0 5.2E-29 1.1E-33 184.6 7.2 121 27-158 8-138 (139)
6 PF10429 Mtr2: Nuclear pore RN 99.1 1E-09 2.2E-14 85.3 9.0 97 33-138 5-107 (166)
7 KOG3763|consensus 99.0 1.7E-09 3.6E-14 97.8 9.6 139 12-157 323-498 (585)
8 cd00531 NTF2_like Nuclear tran 98.9 6.7E-08 1.5E-12 68.3 12.7 115 36-154 2-123 (124)
9 TIGR02246 conserved hypothetic 97.7 0.0023 4.9E-08 46.3 13.3 111 34-154 5-125 (128)
10 PF15008 DUF4518: Domain of un 97.6 0.00054 1.2E-08 57.5 10.0 126 29-156 125-260 (262)
11 PF13474 SnoaL_3: SnoaL-like d 97.6 0.0029 6.2E-08 45.1 12.2 110 36-153 2-117 (121)
12 PF14534 DUF4440: Domain of un 97.4 0.0054 1.2E-07 42.4 11.3 100 38-147 4-107 (107)
13 PF12893 Lumazine_bd_2: Putati 96.3 0.24 5.2E-06 35.8 12.8 105 35-153 6-116 (116)
14 cd00780 NTF2 Nuclear transport 96.3 0.0035 7.6E-08 45.9 2.7 24 8-31 1-24 (119)
15 PF08332 CaMKII_AD: Calcium/ca 96.2 0.29 6.4E-06 36.9 12.8 109 33-149 4-121 (128)
16 PF12680 SnoaL_2: SnoaL-like d 96.2 0.051 1.1E-06 36.7 8.1 46 39-92 1-47 (102)
17 cd00781 ketosteroid_isomerase 95.8 0.21 4.6E-06 35.8 10.5 52 36-93 6-58 (122)
18 PF13577 SnoaL_4: SnoaL-like d 94.3 1.1 2.5E-05 31.8 10.6 70 33-107 7-79 (127)
19 TIGR02096 conserved hypothetic 93.5 0.62 1.4E-05 33.5 7.9 48 39-92 4-52 (129)
20 PF02136 NTF2: Nuclear transpo 92.5 0.045 9.8E-07 39.3 0.5 19 12-30 1-20 (118)
21 COG4319 Ketosteroid isomerase 89.6 3.8 8.1E-05 31.4 8.5 95 49-151 27-128 (137)
22 PF11533 DUF3225: Protein of u 86.6 12 0.00025 28.2 14.8 119 27-156 5-124 (125)
23 COG4875 Uncharacterized protei 78.9 26 0.00056 26.6 9.3 54 32-91 37-90 (156)
24 KOG4353|consensus 78.3 2.4 5.2E-05 32.1 2.9 39 11-49 14-67 (139)
25 PRK08241 RNA polymerase factor 77.2 35 0.00077 29.0 10.3 54 32-91 213-267 (339)
26 PRK09636 RNA polymerase sigma 74.3 34 0.00075 28.6 9.4 58 35-92 173-231 (293)
27 COG3631 Ketosteroid isomerase- 70.8 42 0.00092 25.2 9.4 55 36-92 7-62 (133)
28 TIGR02960 SigX5 RNA polymerase 67.2 17 0.00037 30.5 6.0 52 34-91 205-257 (324)
29 TIGR02957 SigX4 RNA polymerase 61.1 96 0.0021 25.8 9.4 72 36-107 167-242 (281)
30 PF07858 LEH: Limonene-1,2-epo 51.7 99 0.0021 23.1 9.2 50 32-91 4-54 (125)
31 smart00593 RUN domain involved 43.9 38 0.00082 21.8 3.4 45 36-92 11-55 (64)
32 PF07366 SnoaL: SnoaL-like pol 42.2 53 0.0011 23.3 4.3 53 42-103 7-64 (126)
33 PF02759 RUN: RUN domain; Int 40.4 42 0.00091 24.1 3.5 44 37-92 80-123 (133)
34 PF05553 DUF761: Cotton fibre 37.9 48 0.001 19.7 2.8 22 29-50 3-24 (38)
35 PF07080 DUF1348: Protein of u 34.4 44 0.00096 25.6 2.8 35 48-90 26-60 (143)
36 COG2920 DsrC Dissimilatory sul 32.5 99 0.0022 22.6 4.2 14 79-92 92-105 (111)
37 PF12870 Lumazine_bd: Lumazine 30.8 1.7E+02 0.0037 19.7 6.6 44 98-147 67-110 (111)
38 PF12642 TpcC: Conjugative tra 30.7 2.8E+02 0.006 22.1 7.6 31 33-63 140-171 (232)
39 PF05753 TRAP_beta: Translocon 29.5 1.7E+02 0.0036 23.2 5.6 45 115-159 70-117 (181)
40 PHA01751 hypothetical protein 28.0 1.7E+02 0.0037 21.1 4.7 45 110-155 38-85 (110)
41 TIGR03231 anthran_1_2_B anthra 23.7 3.3E+02 0.0072 20.7 11.0 120 36-156 2-143 (155)
42 KOG3266|consensus 23.3 56 0.0012 25.7 1.7 26 99-124 61-86 (172)
43 PF12642 TpcC: Conjugative tra 23.2 45 0.00098 26.7 1.3 28 35-62 3-35 (232)
44 PF01603 B56: Protein phosphat 22.1 2.1E+02 0.0044 25.5 5.3 43 12-54 130-172 (409)
45 PRK05988 formate dehydrogenase 21.5 2E+02 0.0043 22.1 4.6 48 77-124 87-141 (156)
46 PF08916 Phe_ZIP: Phenylalanin 20.9 1.6E+02 0.0036 19.1 3.3 22 9-30 11-32 (59)
47 PF05941 Chordopox_A20R: Chord 20.3 5.8E+02 0.013 22.4 7.5 99 35-150 172-279 (334)
No 1
>KOG2104|consensus
Probab=100.00 E-value=3e-35 Score=214.93 Aligned_cols=120 Identities=35% Similarity=0.648 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHH
Q psy6106 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIH 85 (177)
Q Consensus 6 ~~~~~~~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~ 85 (177)
+|.++.||++||||||. ++|++|..|..+|.+.|.+|| |++.+.|+++|.
T Consensus 3 d~~~e~v~~~FvqhYY~----------------------~FD~dR~ql~~lY~~~S~LTf--------EGqq~qG~~~Iv 52 (126)
T KOG2104|consen 3 DPVYEAVAKAFVQHYYS----------------------LFDNDRSQLGALYIDTSMLTF--------EGQQIQGKDAIV 52 (126)
T ss_pred CccHHHHHHHHHHHHHH----------------------HhcCchhHhhhhhcccceeeE--------cchhhcchHHHH
Confidence 45778888888888888 666899999999999999987 458999999999
Q ss_pred HHHhhCCCccccEEEeEEeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 86 EHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 86 ~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
++|.+|||.+++|.|+++||||++++||+|+|.|+++.+++++.+|+|.|.|.|+.+|.|++.||+||+-
T Consensus 53 eKl~sLpFqkiqh~IttvD~QPt~~g~ilv~V~G~Lk~dEd~~~~FsQvF~L~~n~~~~~~v~ndiFRLn 122 (126)
T KOG2104|consen 53 EKLTSLPFQKIQHSITTVDSQPTPDGGILVMVVGQLKLDEDPILRFSQVFLLKPNIQGSYYVFNDIFRLN 122 (126)
T ss_pred HHHhcCChhhhhceeeecccccCCCCcEEEEEeeeeeeccCCccceeeEEEEeEcCCCCEEEEeeeEEEe
Confidence 9999999999999999999999999999999999999999999999999999999779999999999985
No 2
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=100.00 E-value=1.8e-33 Score=208.60 Aligned_cols=118 Identities=44% Similarity=0.750 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCC
Q psy6106 31 LHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLG 110 (177)
Q Consensus 31 ~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~ 110 (177)
+++||+.||++||++|+++|+.|++||+++|.++|+| ...+.|+++|.++|.+||++.++|+|.++|||++++
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~-------~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~ 74 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREG-------MKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPS 74 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECC-------ceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCC
Confidence 4667777777777799999999999999999999976 257889999999999999877999999999999999
Q ss_pred CcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEeec
Q psy6106 111 NGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 111 ~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d 156 (177)
++++|+|+|.++.++.+++.|+|+|+|++.+ ++|+|.||+|||+|
T Consensus 75 ~~ili~V~G~~~~~~~~~~~F~q~F~L~~~~-~~~~I~nD~fr~~~ 119 (119)
T cd00780 75 GGVIVMVTGSLKLDEQPPRKFSQTFVLAPQN-GGYFVLNDIFRFVD 119 (119)
T ss_pred CCEEEEEEEEEEECCCCceeEeEEEEEEecC-CeEEEEeeEEEecC
Confidence 9999999999999988899999999999996 99999999999985
No 3
>KOG0116|consensus
Probab=99.97 E-value=8.9e-32 Score=236.25 Aligned_cols=128 Identities=50% Similarity=0.855 Sum_probs=118.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHH
Q psy6106 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIH 85 (177)
Q Consensus 6 ~~~~~~~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~ 85 (177)
-|.++.||+.||||||+ .|.+.|+.|++||.++|.++|.+.++ .+..++|.++|.
T Consensus 10 ~~~~~~vg~~Fv~qYY~----------------------~L~~~P~~lhrfY~~~S~ltr~~~dg---~m~s~t~~~~I~ 64 (419)
T KOG0116|consen 10 VPTPQLVGNEFVRQYYN----------------------VLQNSPSKLHRFYMDDSVLTRPGLDG---KMVSVTGLEAIH 64 (419)
T ss_pred CCCHHHHHHHHHHHHHH----------------------HHhhChHHHHHHhhccceeeccCCCC---ceEEEecHHHhh
Confidence 67889999999999998 67788999999999999999998764 346899999999
Q ss_pred HHHhhCCCccccEEEeEEeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEeecccC
Q psy6106 86 EHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDFLV 159 (177)
Q Consensus 86 ~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d~~~ 159 (177)
+++.+|+++.|+.+|.++|+|.+.++|++|+|+|.|+.++.+.|+|+|||+|+|++ ++|+|+||||||+|+.+
T Consensus 65 ~~i~sld~~~~s~eI~tvdsQ~S~~~GvvI~VtG~lt~~~~~rRkF~QtFfLapq~-~~yfVlNDiFRfvde~~ 137 (419)
T KOG0116|consen 65 EKIMSLDYEVCSVEISTVDSQASLEKGVVIMVTGYLTNKDGPRRKFSQTFFLAPQE-KGYFVLNDIFRFVDEEF 137 (419)
T ss_pred hheeecCCCceeEEEEEEehhhhccCCeEEEEEEEEEeCCCcceEEEEEEEEeecC-CceEEEechhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999996 69999999999999654
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.96 E-value=2.2e-28 Score=179.47 Aligned_cols=112 Identities=38% Similarity=0.727 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccc-cCCceEEecCCCCCCcccc-eecCHHHHHHHHhhCCCccccEEEeEEeee--ee
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFY-SENSLFIHGGLDAPNRETK-QVVGQEQIHEHIQQLNFRDCHAKIRQVDSQ--AT 108 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY-~~~S~~~~~g~~~~~~~~~-~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q--~~ 108 (177)
||+.|+++||++|++ +|+.|++|| .+.|.++|+| . .+.|+++|.++|.++|.+.+++.|.++||| +.
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~--------~~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~ 72 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNG--------NRPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPS 72 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETT--------ECEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCC--------chhhhhHHHHHHHHhcCCCcccEEEecccccccccc
Confidence 466677777778998 999999999 6666777766 5 899999999999999976669999999999 46
Q ss_pred CCCcEEEEEEeEeeeCCCC-CceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 109 LGNGVVVQVSGELSNGGQP-MRRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~~~~~-~r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
.+++++|+|+|.++.++.+ .++|+|+|+|+|.+ ++|+|.||+|||
T Consensus 73 ~~~~i~i~v~G~~~~~~~~~~~~F~q~FvL~~~~-~~~~I~nd~~r~ 118 (118)
T PF02136_consen 73 SDGSILITVTGQFKEDDNPNPRRFSQTFVLVPQN-NGYFIANDIFRF 118 (118)
T ss_dssp CCSEEEEEEEEEEEETTSEEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred cCCcEEEEEEeEEEecCCCcccEEEEEEEEEEcC-CEEEEEeeEEEC
Confidence 7889999999999998875 69999999999996 999999999997
No 5
>KOG4353|consensus
Probab=99.95 E-value=5.2e-29 Score=184.57 Aligned_cols=121 Identities=31% Similarity=0.523 Sum_probs=111.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeee
Q psy6106 27 APAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQ 106 (177)
Q Consensus 27 ~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q 106 (177)
-.|.+|+.|++|++.||..||++|..|.+||.++|.++||| +++.|.+.|.+++..|| .++|.|.++|||
T Consensus 8 ~ves~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNG--------n~v~g~esls~ff~~LP--sS~~qi~~lD~Q 77 (139)
T KOG4353|consen 8 YVESACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNG--------NPVSGTESLSEFFNMLP--SSEFQINDLDCQ 77 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcC--------CcchhHHHHHHHHHhCC--Cccccccccccc
Confidence 34789999999999999999999999999999999999998 88999999999999999 579999999999
Q ss_pred eeCCC------cEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEE----EEcceEEeeccc
Q psy6106 107 ATLGN------GVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYY----VHNDIFRYQDFL 158 (177)
Q Consensus 107 ~~~~~------~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~----I~nD~fr~~d~~ 158 (177)
|.+++ ++||+|.|.++++|+..|.|.|+|+|.+.. +.|. |.+||||+.||.
T Consensus 78 pv~dqat~~q~~vLvvvsGtVkFdG~k~r~F~qt~ll~~e~-~~~k~~~~v~Sd~fr~~d~~ 138 (139)
T KOG4353|consen 78 PVHDQATGSQTTVLVVVSGTVKFDGNKQRVFNQTFLLTAED-PPFKTVWKVASDCFRFQDWQ 138 (139)
T ss_pred cchhhcccccceEEEEEeeeEEEcCCccccccceeEEeecC-Cccchhhhhhhhhhhhhhcc
Confidence 98653 699999999999998899999999999873 5555 999999999984
No 6
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=99.06 E-value=1e-09 Score=85.34 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhc-----ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeee
Q psy6106 33 RVGREFVRQYYTLLNQ-----APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQA 107 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-----~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~ 107 (177)
++++.||+.||..||. .++-|..||.++|.++||| +++.++.+.++.|.++|. .++|.+.++|||.
T Consensus 5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng--------~Pi~~~~~F~~~w~~~pv-~TqH~L~s~D~H~ 75 (166)
T PF10429_consen 5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNG--------TPIAQPTAFQQTWQQQPV-QTQHQLTSFDCHV 75 (166)
T ss_dssp CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETT--------EEES-HHHHHHHHHCCS---EEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECC--------ccCCCHHHHHHHHHhCcc-ceeeeeeeeeeeE
Confidence 3567788888888882 2445788999999999988 899999999999999995 4899999999999
Q ss_pred eCC-CcEEEEEEeEeeeCCCCCceeEEEEEEE
Q psy6106 108 TLG-NGVVVQVSGELSNGGQPMRRFTQTFVLA 138 (177)
Q Consensus 108 ~~~-~~ilI~V~G~v~~~~~~~r~FsqtFvL~ 138 (177)
+++ +.+++.|+|.|+++++..-+=-|+..|.
T Consensus 76 IPGsgt~i~N~n~KVRFDEsGrdk~G~~a~l~ 107 (166)
T PF10429_consen 76 IPGSGTFIINVNCKVRFDESGRDKLGEDADLP 107 (166)
T ss_dssp ETTTTEEEEEEEEEEEEB-SSB-TTS-B--TT
T ss_pred eCCCCeEEEeeeEEEEecCCCCCCCCCceeec
Confidence 986 4699999999999865433333444443
No 7
>KOG3763|consensus
Probab=99.01 E-value=1.7e-09 Score=97.77 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCh-hhHhccccCCceEEecC-----C--CC---------CC--
Q psy6106 12 VGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAP-AHLHRFYSENSLFIHGG-----L--DA---------PN-- 72 (177)
Q Consensus 12 ~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r-~~L~~fY~~~S~~~~~g-----~--~~---------~~-- 72 (177)
.+..|=|-||- .+.+..+..+|+++||..+|+++ ..+...|+++|+|++.- . +. .+
T Consensus 323 ~~~p~k~~ff~-----~~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRN 397 (585)
T KOG3763|consen 323 TPMPCKQNFFG-----SEELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRN 397 (585)
T ss_pred CCcchhhcccC-----chHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcch
Confidence 45556666664 47789999999999999999865 55778999999999741 0 10 00
Q ss_pred ---------cccceecCHHHHHHHHhhCCCccccEEEeE--EeeeeeCCCcEEEEEEeEeeeCC-C---CCce---eEEE
Q psy6106 73 ---------RETKQVVGQEQIHEHIQQLNFRDCHAKIRQ--VDSQATLGNGVVVQVSGELSNGG-Q---PMRR---FTQT 134 (177)
Q Consensus 73 ---------~~~~~~~G~~~I~~~l~~lp~~~~~~~I~s--vD~Q~~~~~~ilI~V~G~v~~~~-~---~~r~---Fsqt 134 (177)
+.....+|...|...|++|| ++.|...+ +|..--..+++.+.|.|.+...+ + .-+. |++|
T Consensus 398 i~~l~~~~~r~srl~~g~~~Iv~aLs~LP--kT~Hdl~s~vvDv~~~~~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRt 475 (585)
T KOG3763|consen 398 ILKLKDPYLRASRLKHGACDIVVALSALP--KTQHDLDSFVVDVWYQTGNLLGFTVAGVFRDGEGQNSPSNRALLGFTRT 475 (585)
T ss_pred hhhhcCHHHHHHhhhccchHHHHHHHhCc--cchhhhhhhheeeeecccceEEEEEEEEeecCCccCCcccccccccceE
Confidence 12246789999999999999 57787765 56555567789999999998642 2 2234 9999
Q ss_pred EEEEeeCCCcEEEEcceEEeecc
Q psy6106 135 FVLAAQSPKKYYVHNDIFRYQDF 157 (177)
Q Consensus 135 FvL~~~~~~~y~I~nD~fr~~d~ 157 (177)
|++.|.++.+-.|.||.+-.-..
T Consensus 476 fvv~P~~ns~l~iv~d~Lfi~~~ 498 (585)
T KOG3763|consen 476 FVVTPRENSGLAIVNDQLFIASA 498 (585)
T ss_pred EEEeeCCCCceEEEeceeEEeec
Confidence 99999988999999999966443
No 8
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.90 E-value=6.7e-08 Score=68.33 Aligned_cols=115 Identities=30% Similarity=0.383 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHh-cChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC--ccccEEEeEEeeeeeCC-C
Q psy6106 36 REFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF--RDCHAKIRQVDSQATLG-N 111 (177)
Q Consensus 36 ~~Fv~~YY~~l~-~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~--~~~~~~I~svD~Q~~~~-~ 111 (177)
+.|+.+||..|| .+++.|..||.+++.+.+++.+ .......|+++|.+.+..++. ...+|.+.+++++...+ .
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~---~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 78 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGD---GLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGE 78 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCC---EEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCE
Confidence 456777777888 4678899999999999886521 112456899999999999873 34566678899888765 3
Q ss_pred cEEEEEEeEeeeCC---CCCceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 112 GVVVQVSGELSNGG---QPMRRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 112 ~ilI~V~G~v~~~~---~~~r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
...+.+.|.+...+ .....+.+.|.+.+. ++.|.|.+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~w~i~~~~~~~ 123 (124)
T cd00531 79 GVVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQ-GGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEEEEccCCceeEEEEEEEEEEEEe-CCEEEEEEEEEec
Confidence 56677778777654 346788999999988 6999999999875
No 9
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=97.71 E-value=0.0023 Score=46.26 Aligned_cols=111 Identities=11% Similarity=0.136 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC---CccccEEEeEEeeeeeC
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN---FRDCHAKIRQVDSQATL 109 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp---~~~~~~~I~svD~Q~~~ 109 (177)
.-...+..|+..+++ +++.+..+|.+++.+... .+....|+++|.+.+..+- ...+++.+.....+-..
T Consensus 5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~-------~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 77 (128)
T TIGR02246 5 AIRALVATWEAAWAAGDAEGFADLFTPDGVFVTV-------PGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLG 77 (128)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECC-------CCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecC
Confidence 356677888888887 788999999999998621 1246799999999988642 12234566555544444
Q ss_pred CCcEEEEEEeEee--eC-CCCC---ceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 110 GNGVVVQVSGELS--NG-GQPM---RRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 110 ~~~ilI~V~G~v~--~~-~~~~---r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
++... |.|... .. +... ....-++++.+. +++|.|..+.+..
T Consensus 78 ~~~A~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~g~W~I~~~h~s~ 125 (128)
T TIGR02246 78 PDLAI--VHAIQTITAPGKGRARPDAAVRLTFVAVKR-DGRWLLAADHNTP 125 (128)
T ss_pred CCEEE--EEEEEEEEcCCCCCCCCCcceEEEEEEEee-CCeEEEEeccCCC
Confidence 43333 444433 22 2221 123345666665 6899999886543
No 10
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=97.64 E-value=0.00054 Score=57.52 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHHHhc--ChhhHhccccCCce-EEecCCCCCCcccceecCHHHHHHHHhhCCCcccc---EEEeE
Q psy6106 29 AHLHRVGREFVRQYYTLLNQ--APAHLHRFYSENSL-FIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCH---AKIRQ 102 (177)
Q Consensus 29 ~~~~~va~~Fv~~YY~~l~~--~r~~L~~fY~~~S~-~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~---~~I~s 102 (177)
...+.+|..|.++||.+|+. +--....|+.+-+. +..+..+ ......+.|.+.+..+|.+|..+..- ..+.+
T Consensus 125 ~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~--~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~ 202 (262)
T PF15008_consen 125 YPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSE--QNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDS 202 (262)
T ss_pred CCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCC--CceeEEecCHHHHHHHHHHHhhcccEEECCCCCC
Confidence 34788999999999999999 33345568876542 2222211 11112348999999999998632111 12223
Q ss_pred --EeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEee--CCCcEEEEcceEEeec
Q psy6106 103 --VDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQ--SPKKYYVHNDIFRYQD 156 (177)
Q Consensus 103 --vD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~--~~~~y~I~nD~fr~~d 156 (177)
+.|-.++.|.++|.|.|++-.++.--=-|-|.|=|.+. ..+.|.|..=-+++..
T Consensus 203 ~G~k~~~~phGlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~WKiK~~~l~i~~ 260 (262)
T PF15008_consen 203 DGVKGRISPHGLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNWKIKFVNLRIRG 260 (262)
T ss_pred CCcceEEcCCCcEEEEEeeeEecCCceEeehhhhhhcccCccccCceeEEEEEEEEEe
Confidence 66777788899999999998876534469999999977 3689999988887764
No 11
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=97.60 E-value=0.0029 Score=45.10 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC-C-CccccEEEeEEeeeeeCCCc
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-N-FRDCHAKIRQVDSQATLGNG 112 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l-p-~~~~~~~I~svD~Q~~~~~~ 112 (177)
..+++.|+..+.. +.+.+..+|.+++.+..++ .+....|.++|.+++... . ....++.+..+.++. .++.
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ 74 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTG------PGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSV-SGDV 74 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETT------SSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEE-ETTE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCC------CCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEE-CCCE
Confidence 3566777777776 5688999999999887644 225678999999988762 2 124566666666665 3455
Q ss_pred EEEEEEeEeee--CCCC-CceeEEEEEEEeeCCCcEEEEcceEE
Q psy6106 113 VVVQVSGELSN--GGQP-MRRFTQTFVLAAQSPKKYYVHNDIFR 153 (177)
Q Consensus 113 ilI~V~G~v~~--~~~~-~r~FsqtFvL~~~~~~~y~I~nD~fr 153 (177)
.++...+.+.. ++++ ...+..|+++++. ++.|.|......
T Consensus 75 a~~~~~~~~~~~~~~~~~~~~~r~t~v~~k~-~~~Wki~h~H~S 117 (121)
T PF13474_consen 75 AVVTGEFRLRFRNDGEEIEMRGRATFVFRKE-DGGWKIVHIHWS 117 (121)
T ss_dssp EEEEEEEEEEEECTTCEEEEEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCccceeeEEEEEEEEEE-CCEEEEEEEEec
Confidence 66666666654 3333 4667899999988 589999876654
No 12
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=97.40 E-value=0.0054 Score=42.38 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=66.2
Q ss_pred HHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCCCcEEEE
Q psy6106 38 FVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQ 116 (177)
Q Consensus 38 Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI~ 116 (177)
..++|...+.+ +.+.+..+|+++..+..++ ....|++++.+.+..-+......++.....+.. ++..++.
T Consensus 4 ~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~--------g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~ 74 (107)
T PF14534_consen 4 LEEQYEDAFNAGDIDALASLYADDFVFVGPG--------GTILGKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVR 74 (107)
T ss_dssp HHHHHHHHHHTTHHHHHHTTEEEEEEEEETT--------SEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHhhhCCCEEEECCC--------CCEeCHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEE
Confidence 44556666665 5788999999999988644 334599999999987543344556666777777 4445555
Q ss_pred EEeEeeeCCCC---CceeEEEEEEEeeCCCcEEE
Q psy6106 117 VSGELSNGGQP---MRRFTQTFVLAAQSPKKYYV 147 (177)
Q Consensus 117 V~G~v~~~~~~---~r~FsqtFvL~~~~~~~y~I 147 (177)
....++..+.. ...+..+.++.+. +|+|.|
T Consensus 75 ~~~~~~~~~~g~~~~~~~~~~~v~~k~-~g~W~i 107 (107)
T PF14534_consen 75 GRWTFTWRGDGEPVTIRGRFTSVWKKQ-DGKWRI 107 (107)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEE-TTEEEE
T ss_pred EEEEEEEecCCceEEEEEEEEEEEEEe-CCEEEC
Confidence 55555543321 2456667777777 689976
No 13
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=96.32 E-value=0.24 Score=35.79 Aligned_cols=105 Identities=11% Similarity=0.156 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC-----CCccccEEEeEEeeeee
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-----NFRDCHAKIRQVDSQAT 108 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l-----p~~~~~~~I~svD~Q~~ 108 (177)
...-|+.|+..+.+ +...|.+.+++++.+.... + ........++..+.+.+- +...+...|.++|...
T Consensus 6 I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g- 79 (116)
T PF12893_consen 6 IEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-K----GKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG- 79 (116)
T ss_dssp HHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-T----TEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-C----CceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC-
Confidence 44556677777775 7788999999999887643 1 113445667777777753 2234556666666553
Q ss_pred CCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEE
Q psy6106 109 LGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 153 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr 153 (177)
+.-.+.|.=.+. .+.|.-.|.|.+. +|+|.|.|=+|+
T Consensus 80 --~~A~a~v~~~~~-----~~~~~d~~~L~K~-dg~WkIv~k~~~ 116 (116)
T PF12893_consen 80 --DVASAKVEYEFP-----GFWFVDYFTLVKT-DGGWKIVSKVYH 116 (116)
T ss_dssp --TEEEEEEEEEEE-----TEEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred --CEEEEEEEEEEC-----CCceEEEEEEEEE-CCEEEEEEEecC
Confidence 344444443333 3589999999998 699999998774
No 14
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=96.27 E-value=0.0035 Score=45.89 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCchhH
Q psy6106 8 SPQCVGREFVRQYYTLLNQAPAHL 31 (177)
Q Consensus 8 ~~~~~~~~fv~~yy~~~~~~~~~~ 31 (177)
.++.||.+||++||++++..|+.+
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L 24 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGL 24 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHH
Confidence 367899999999999999887653
No 15
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=96.17 E-value=0.29 Score=36.89 Aligned_cols=109 Identities=10% Similarity=0.093 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHh-cChhhHhccccCC-ceEEecCCCCCCcccceecCHHHHHHHHhhCCCc---cccEEEeEEeeee
Q psy6106 33 RVGREFVRQYYTLLN-QAPAHLHRFYSEN-SLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR---DCHAKIRQVDSQA 107 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~-~~r~~L~~fY~~~-S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~---~~~~~I~svD~Q~ 107 (177)
+|+.-| +++-..+. .+++....+|+++ +.+.+. --++...|.+.|+.+|.....+ ..+..|..-..|-
T Consensus 4 eI~~l~-~~w~~ai~tgD~~~~~~ly~~d~av~~Pt------~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~ 76 (128)
T PF08332_consen 4 EIAALF-DRWNDAIQTGDPETYAKLYAPDVAVFEPT------VSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRL 76 (128)
T ss_dssp HHHHHH-HHHHHHHHHT-HHHHHHHEEEEEEEEEGG------GTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEE
T ss_pred HHHHHH-HHHHHHHHcCCHHHHhhhcCCCeeEeccc------cCCceecChHHHHHHHhcccccCCCceeeEecCCeEEE
Confidence 333333 33344454 4899999999999 888653 2347889999999999965322 2334465666666
Q ss_pred eCCCcEEEEEEeEeee-CCC-CC--ceeEEEEEEEeeCCCcEEEEc
Q psy6106 108 TLGNGVVVQVSGELSN-GGQ-PM--RRFTQTFVLAAQSPKKYYVHN 149 (177)
Q Consensus 108 ~~~~~ilI~V~G~v~~-~~~-~~--r~FsqtFvL~~~~~~~y~I~n 149 (177)
.+++..++.-.=.++. +++ .+ ..=-.|||-... +|+|.|.+
T Consensus 77 lg~~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~-~g~W~ivh 121 (128)
T PF08332_consen 77 LGDNAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKR-DGKWKIVH 121 (128)
T ss_dssp ESTTEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEE-TTEEEEEE
T ss_pred cCCCEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEe-CCeEEEEE
Confidence 6665555544444444 222 12 344668888877 58999875
No 16
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=96.16 E-value=0.051 Score=36.75 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=36.7
Q ss_pred HHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 39 VRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 39 v~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
|++||..+++ +.+.|..+|++++.+..++ ....|+++|.+.+..+.
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~--------~~~~g~~~~~~~~~~~~ 47 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPG--------GTLRGREAIREFFEEFF 47 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETT--------SEEESHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCC--------CcccCHHHHHHHHHHHH
Confidence 4567777776 5688999999999987643 45899999999998874
No 17
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=95.83 E-value=0.21 Score=35.78 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~ 93 (177)
+..+++||..+++ +.+.|..+|++++.+.+.. ......|+++|.+.+..+..
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~------~~~~~~G~~~i~~~~~~~~~ 58 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPV------GSPPRSGRAAIAAFYAQSLG 58 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCC------CCCCccCHHHHHHHHHHHhc
Confidence 4456777778876 6788999999999986432 11468999999999998863
No 18
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=94.35 E-value=1.1 Score=31.79 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC--CCccccEEEeEEeeee
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVDSQA 107 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l--p~~~~~~~I~svD~Q~ 107 (177)
.....++..|...+|. +.+.+..++.+++.+.+.+.. .....|+++|.+.+... +...+.|.+.+.....
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~-----~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~ 79 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFG-----FGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDV 79 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTC-----EEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCcc-----ccccCCHHHHHHHHHHhcccccceeEEccceEEEE
Confidence 4567788888889997 567899999999999886410 24788999999998875 2224666666554443
No 19
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=93.46 E-value=0.62 Score=33.48 Aligned_cols=48 Identities=10% Similarity=0.240 Sum_probs=35.3
Q ss_pred HHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 39 VRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 39 v~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
+++||+.+++ +.+.+..+|++++.+...+ .+....|+++|.+.+..+.
T Consensus 4 v~~~~~a~~~~d~~~~~~~~~~d~~~~~~~------~~~~~~G~~~~~~~~~~~~ 52 (129)
T TIGR02096 4 AQHWIEAFNRGDMDAVLALLAEDVLYDDNQ------GGRVLGGKAQLARFLAPYR 52 (129)
T ss_pred HHHHHHHHHCCCHHHHHHhcCCCeEEEcCC------CCcEeccHHHHHHHHHHHH
Confidence 5667777776 6788999999999876433 1245678999998777553
No 20
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=92.46 E-value=0.045 Score=39.32 Aligned_cols=19 Identities=37% Similarity=0.709 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCC-Cchh
Q psy6106 12 VGREFVRQYYTLLNQ-APAH 30 (177)
Q Consensus 12 ~~~~fv~~yy~~~~~-~~~~ 30 (177)
||++||++||+++|. .++.
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~ 20 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREG 20 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGG
T ss_pred CHHHHHHHHHHHHccCCHHH
Confidence 799999999999998 5543
No 21
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=89.56 E-value=3.8 Score=31.35 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=60.9
Q ss_pred ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC-CccccEEEeEEeeeeeCCCcEEEEEEeEeeeCC--
Q psy6106 49 APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN-FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGG-- 125 (177)
Q Consensus 49 ~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp-~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~-- 125 (177)
+-+.+..||.+++.+.-. .+....|+++|++.+...- .....++.+..+.|-... |=+..++|...+.+
T Consensus 27 D~~av~~~YtdDav~f~~-------~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~-GD~a~~~~~~~~~~~~ 98 (137)
T COG4319 27 DADAVADFYTDDAVVFPP-------PGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHES-GDVAFVTALLLLTGTK 98 (137)
T ss_pred cHHHHHHhcCCceEEecC-------CCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeecc-CCEEEEEEeeeeeccC
Confidence 567799999999998531 2367889999999998652 112344455555553322 22333455544432
Q ss_pred ---CC-CceeEEEEEEEeeCCCcEEEEcce
Q psy6106 126 ---QP-MRRFTQTFVLAAQSPKKYYVHNDI 151 (177)
Q Consensus 126 ---~~-~r~FsqtFvL~~~~~~~y~I~nD~ 151 (177)
.+ ...---|.++++..+|+|+|.-|.
T Consensus 99 ~dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh 128 (137)
T COG4319 99 KDGPPADLAGRATYVFRKEADGGWKLAHDH 128 (137)
T ss_pred CCCcchhheeeeEEEEEEcCCCCEEEEEec
Confidence 22 244556888888877899999884
No 22
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=86.62 E-value=12 Score=28.23 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=70.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeee
Q psy6106 27 APAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQ 106 (177)
Q Consensus 27 ~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q 106 (177)
.|+-..+|...|-...=-++.++-+.|-.|+.++..-.+-| .+....|.++|..+-..-|...-.-.+...-..
T Consensus 5 ~p~v~aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg------~~E~LyG~~aI~aFR~~R~~~~~~R~l~~~~it 78 (125)
T PF11533_consen 5 DPEVVAEVTAAFDRYERALMANDVDALDALFWDDPRTVRYG------AGENLYGHDAIRAFRAARPGGGPARTLERTVIT 78 (125)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEE------TTEEEESHHHHHHHHHHS--TTTT-EEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEEC------CCccccCHHHHHHHHhcCCCCCCCcEEEEEEEE
Confidence 35667777777765554455567788998777776666644 235778999999988887643333455555555
Q ss_pred eeCCCcEEEEEEeEeeeCCCCC-ceeEEEEEEEeeCCCcEEEEcceEEeec
Q psy6106 107 ATLGNGVVVQVSGELSNGGQPM-RRFTQTFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 107 ~~~~~~ilI~V~G~v~~~~~~~-r~FsqtFvL~~~~~~~y~I~nD~fr~~d 156 (177)
..+.+ +. +|+=.++..+.+. =+=+|+++- . +++|.|..=.-.+++
T Consensus 79 t~G~d-~A-~v~tef~r~~~~~~GRQsQtWvr--~-~~gWrIvaAHVS~~~ 124 (125)
T PF11533_consen 79 TFGRD-FA-TVSTEFRRDGSGRIGRQSQTWVR--F-PDGWRIVAAHVSLMD 124 (125)
T ss_dssp EETTT-EE-EEEEEEEETTECCEEEEEEEEEE--E-TTEEEEEEEEEEEE-
T ss_pred EecCc-eE-EEEEEEEECCCCceeEeEEEEEE--C-CCCEEEEEEEEeecc
Confidence 55555 22 3444566655432 233666665 4 468999886666553
No 23
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=78.89 E-value=26 Score=26.59 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 32 HRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
.+||.-|=++==.+...+|..+...|.+++.+.-. .-.+.-..+.+|.+.+...
T Consensus 37 ~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT------~Sn~vR~s~~ei~DYF~~F 90 (156)
T COG4875 37 REVAALFDRWNAALTTGDPNKVAANYAPDAVLLPT------MSNQVRSSRSEILDYFSHF 90 (156)
T ss_pred HHHHHHHHHHHhhhhcCChHHHHhhcCCceEeecc------cccccccCHHHHHHHHHHH
Confidence 46777776665556666999999999999998632 1223445678888877754
No 24
>KOG4353|consensus
Probab=78.34 E-value=2.4 Score=32.12 Aligned_cols=39 Identities=23% Similarity=0.540 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCCchhHHH---------------HHHHHHHHHHHHHhcC
Q psy6106 11 CVGREFVRQYYTLLNQAPAHLHR---------------VGREFVRQYYTLLNQA 49 (177)
Q Consensus 11 ~~~~~fv~~yy~~~~~~~~~~~~---------------va~~Fv~~YY~~l~~~ 49 (177)
.-+.+||+.||..||.--+.+.+ .|.+++..|++.|-+.
T Consensus 14 r~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn~v~g~esls~ff~~LPsS 67 (139)
T KOG4353|consen 14 RAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGNPVSGTESLSEFFNMLPSS 67 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCCcchhHHHHHHHHHhCCCc
Confidence 36889999999999865443333 4556666666655443
No 25
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=77.25 E-value=35 Score=28.96 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
...-...++.||..+.. +.+.|..++++++.+...+ .+..+.|+++|..++..+
T Consensus 213 ~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~------~~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 213 DPEERALLARYVAAFEAYDVDALVALLTEDATWSMPP------FPLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCC------CCCcccCHHHHHHHHHhh
Confidence 35556678888888886 6788999999999887543 124689999999999986
No 26
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=74.34 E-value=34 Score=28.56 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
....+..|+..+.+ +.+.|..++++++.+.-.|.....-....+.|++.|..+|..+.
T Consensus 173 ~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~ 231 (293)
T PRK09636 173 GAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLA 231 (293)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHh
Confidence 34567777777876 78899999999999875442110001246789999999998764
No 27
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=70.84 E-value=42 Score=25.22 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
.+-++.||..+.+ +.+.+..+++++..+.+.+.+.. -+....|.+.+...+..+|
T Consensus 7 ~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~--~~~~~~g~~~~~~~~~~~~ 62 (133)
T COG3631 7 TDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPL--SGTFRGGVAIRRDVFALLP 62 (133)
T ss_pred hhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCC--ccccccchhhhhHHhhhCh
Confidence 3445666667776 67789999999999988774422 2234447777788888887
No 28
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=67.22 E-value=17 Score=30.54 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
....-+..||..+.+ +.+.|..++++++.+.... -...+.|+++|..++..+
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~------~~~~~~G~~~v~~~~~~~ 257 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMPP------YTLWYQGRPAIVGFIHTV 257 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCC------CCcceeCHHHHHHHHHHh
Confidence 345678888889986 6788999999999987542 124789999999999987
No 29
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=61.08 E-value=96 Score=25.79 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCc---cccEEEeEEeeee
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR---DCHAKIRQVDSQA 107 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~---~~~~~I~svD~Q~ 107 (177)
...+..|-..+.. +.+.|..+-++++.+.-.|...-.-...++.|.+.|..+|..+-.. ..+.....++.+|
T Consensus 167 ~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~~~vnG~p 242 (281)
T TIGR02957 167 RQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDPVDVNGQP 242 (281)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEEEEECCCc
Confidence 4566666666665 7788999999999998654211011235789999999998765311 1234444555555
No 30
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=51.69 E-value=99 Score=23.07 Aligned_cols=50 Identities=16% Similarity=0.406 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcC-hhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 32 HRVGREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~~-r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
.++...|+..+- ..+ ...+..+..+++.+ +|- .-.++.|+++|.+.|..+
T Consensus 4 ~~vV~~F~~a~~---~~D~~~a~~~~~~~d~vy-~Nv------plp~i~G~~~~~~~l~~~ 54 (125)
T PF07858_consen 4 EEVVRAFLAALE---DRDVDAALASLFDDDAVY-HNV------PLPPIRGRDAIRAFLRGF 54 (125)
T ss_dssp HHHHHHHHHHHH---HT-HHHHHHHCEECC-EE-EET------TTEEEESHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHhcCCCcEE-EeC------CCCCcccHHHHHHHHHHH
Confidence 345555555542 134 34566666777676 432 124789999999999988
No 31
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=43.90 E-value=38 Score=21.78 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
+.-+..|.+.+..+...+.++|.+.|.+.. -.+.+.+...+..|.
T Consensus 11 e~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~------------~~~~~~l~~~L~~L~ 55 (64)
T smart00593 11 EKLLSSWLNLLLSDEELLSKYYEPWAFLRD------------PEEGEQLLGLLVGLS 55 (64)
T ss_pred HhHHHHHHHHHHhChHHHHHhCCCCceeeC------------hhHHHHHHHHHhCcc
Confidence 455777888888888899999999999842 134555666666653
No 32
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=42.18 E-value=53 Score=23.27 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=34.5
Q ss_pred HHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC----CCccccEEEeEE
Q psy6106 42 YYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL----NFRDCHAKIRQV 103 (177)
Q Consensus 42 YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l----p~~~~~~~I~sv 103 (177)
|...+++ +.+.+..+|+++...-..+ . ....|++++.+.+..+ | +.++.|..+
T Consensus 7 ~~~~~n~~d~~~~~~~~~~d~~~~~~~------~-~~~~G~~~~~~~~~~~~~afP--D~~~~i~~~ 64 (126)
T PF07366_consen 7 YEEVWNRGDLDALDELVAPDVVFHDPG------P-GPPVGREGFKEFLKELRAAFP--DLRFEIEDV 64 (126)
T ss_dssp HHHHHHTT-GCHHHGTEEEEEEEEGCT------T-TEEEHHHHHHHHHHHHHHHST--TTEEEEEEE
T ss_pred HHHHHhCCCHHHHHHhcCCCEEEEecC------C-CCCCCHHHHHHHHHHHHHHCC--CCEEEEEEE
Confidence 3345455 6788999999999875432 1 5677888887776654 5 456655544
No 33
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=40.39 E-value=42 Score=24.12 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 37 EFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 37 ~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
.-+..|...+..++..+.+||.+.|.+.. ....+.+...+..|.
T Consensus 80 ~~L~~~l~~l~~~~~~l~~~Y~~~A~l~~------------~~~~~~l~~~L~~L~ 123 (133)
T PF02759_consen 80 KCLSSWLQLLLSDPKLLRKYYEPWAFLRD------------PELREQLLSLLSGLS 123 (133)
T ss_dssp T-HHHHHHHHCTTHHHHCCCB-TTSCTTS------------HHHHHHHHHHHGGGG
T ss_pred ChHHHHHHHHHhcchHHcCccCCcceeeC------------cchHHHHHHHHhhhC
Confidence 34677888999999999999999998832 123356666666654
No 34
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=37.90 E-value=48 Score=19.68 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCh
Q psy6106 29 AHLHRVGREFVRQYYTLLNQAP 50 (177)
Q Consensus 29 ~~~~~va~~Fv~~YY~~l~~~r 50 (177)
+.+..-|..|+..||..|--.+
T Consensus 3 ~evd~rAe~FI~~f~~qlrlqr 24 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQLRLQR 24 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999998876543
No 35
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=34.41 E-value=44 Score=25.61 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=26.7
Q ss_pred cChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhh
Q psy6106 48 QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 90 (177)
Q Consensus 48 ~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~ 90 (177)
.+|+.+..-|.++|.. +|. ...+.|+++|..+|..
T Consensus 26 rdP~~ValaYT~Ds~W-RNR-------~eF~~GR~~I~~FLtr 60 (143)
T PF07080_consen 26 RDPEKVALAYTPDSVW-RNR-------DEFLTGREEIVAFLTR 60 (143)
T ss_dssp T-HHHHHTTEEEEEEE-EET-------TEEE-SHHHHHHHHHH
T ss_pred CChhHheeccCCCCcc-cCc-------ccccCcHHHHHHHHHH
Confidence 3789999999999985 332 1578999999999874
No 36
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=32.48 E-value=99 Score=22.62 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=8.5
Q ss_pred cCHHHHHHHHhhCC
Q psy6106 79 VGQEQIHEHIQQLN 92 (177)
Q Consensus 79 ~G~~~I~~~l~~lp 92 (177)
.|+..-..+++.||
T Consensus 92 ~GPAKqA~KiAGlP 105 (111)
T COG2920 92 KGPAKQATKIAGLP 105 (111)
T ss_pred CCcHhhhHHhcCCC
Confidence 35555556777776
No 37
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=30.82 E-value=1.7e+02 Score=19.67 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=22.5
Q ss_pred EEEeEEeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEE
Q psy6106 98 AKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYV 147 (177)
Q Consensus 98 ~~I~svD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I 147 (177)
+.+..+.-... ++...|.| .+.+.+..... .++.|.+. +|.|.|
T Consensus 67 ~~~~~v~~~~~-g~~A~V~v--~~~~~~g~~~~--~~~~lvk~-dg~Wkv 110 (111)
T PF12870_consen 67 IKIVEVEENTI-GDTATVTV--KITYKDGKEKT--FTVPLVKE-DGKWKV 110 (111)
T ss_dssp EEEEEEEEEEE-SSEEEEEE--EEEETTS-EEE--EEEEEEEE-TTEEEE
T ss_pred eEEEEEEEecc-CCEEEEEE--EEEECCCCeeE--EEEEEEEE-CCEEEe
Confidence 44444444433 33333433 34544433333 36777776 699998
No 38
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=30.68 E-value=2.8e+02 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceE
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLF 63 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~ 63 (177)
.-...|+..||..+-+ +...|..|-.+.+.+
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~ 171 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAII 171 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCccc
Confidence 5677888888888865 447888888887755
No 39
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.51 E-value=1.7e+02 Score=23.21 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=32.5
Q ss_pred EEEEeEeeeC--C-CCCceeEEEEEEEeeCCCcEEEEcceEEeecccC
Q psy6106 115 VQVSGELSNG--G-QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDFLV 159 (177)
Q Consensus 115 I~V~G~v~~~--~-~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d~~~ 159 (177)
-.|.|..+.. . .|.-..+|+|+|+|...|.|.+..=...|.+..-
T Consensus 70 ~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~ 117 (181)
T PF05753_consen 70 ELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEG 117 (181)
T ss_pred EeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCC
Confidence 3377765542 1 2445779999999998888999988888875543
No 40
>PHA01751 hypothetical protein
Probab=28.03 E-value=1.7e+02 Score=21.10 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=29.2
Q ss_pred CCcEEEEEEeEee--eCC-CCCceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 110 GNGVVVQVSGELS--NGG-QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 110 ~~~ilI~V~G~v~--~~~-~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
.++|+|.=.|..- +.- -|...|.--|.|.+. +..+-|-=+-||++
T Consensus 38 pnSIiv~k~~d~p~l~~~yIPgFtfYFqF~i~kD-~kTkqiyI~DFRiV 85 (110)
T PHA01751 38 PNSIIVMKTIDYPLIVDLYIPGFTFYFQFSIIQD-QQTKQIFIDDFRVV 85 (110)
T ss_pred CCcEEEEEeccccEEEEEEeCCeEEEEEEEEecC-CcccceeeeeeEEE
Confidence 3456665555432 111 256677788888877 47788888889998
No 41
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=23.69 E-value=3.3e+02 Score=20.71 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcC-hhhHhccccCCceEEecCC-CC------CCcccc--eecCHHHHHHHHh---------hCCCccc
Q psy6106 36 REFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGL-DA------PNRETK--QVVGQEQIHEHIQ---------QLNFRDC 96 (177)
Q Consensus 36 ~~Fv~~YY~~l~~~-r~~L~~fY~~~S~~~~~g~-~~------~~~~~~--~~~G~~~I~~~l~---------~lp~~~~ 96 (177)
.+|+..|=.+||+. -+.-..|+.+++.+..+.. +. +..+.. ...++.-+...+. +.|+..+
T Consensus 2 ~~~l~~ea~llD~~~~~~W~~lf~~d~~Y~vP~~~~~~~~~~d~~~~~~li~~d~~~~L~~RV~rl~~~~a~s~~P~srt 81 (155)
T TIGR03231 2 EQFLYRKAELCDAQDWDAYLDLFDEDSEFHLPQWISEHNYTRDPKRELSLIYYEDRSGLEDRVFRIRTGKAASTTPMPRT 81 (155)
T ss_pred hhHHHHHHHHhcccCHHHHHHHhCcCceEEeeccCCccccccCCCCCceEEEcCChhHHHHHHHHHhCCCeeecCCCCee
Confidence 36777788888875 4678889999998765321 10 001111 1234444444333 3576667
Q ss_pred cEEEeEEeeeeeCCCcEEEEEEeEee-e-CCCCCceeEE-EEEEEeeCCCcEEEEcceEEeec
Q psy6106 97 HAKIRQVDSQATLGNGVVVQVSGELS-N-GGQPMRRFTQ-TFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 97 ~~~I~svD~Q~~~~~~ilI~V~G~v~-~-~~~~~r~Fsq-tFvL~~~~~~~y~I~nD~fr~~d 156 (177)
+|-|+.+-.....++.+.+...=.+. . .+....-|-. ...|++. +++|.|..=...+..
T Consensus 82 rh~vsnv~v~~~~~~~i~v~s~f~~~~~r~~~~~~~~g~~~~~Lrr~-~~g~kI~~R~i~ld~ 143 (155)
T TIGR03231 82 LHNIHNVRIAELEDGLLRVRVNWRTLFNRLGLEGCFYGHATYVLKPT-GDSWLIRRKHSVLLN 143 (155)
T ss_pred EEEEcCEEEEecCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEe-CCEEEEEEEEEEEec
Confidence 88888877655444333322221111 1 1222222222 2457765 578888766555443
No 42
>KOG3266|consensus
Probab=23.33 E-value=56 Score=25.67 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=14.8
Q ss_pred EEeEEeeeeeCCCcEEEEEEeEeeeC
Q psy6106 99 KIRQVDSQATLGNGVVVQVSGELSNG 124 (177)
Q Consensus 99 ~I~svD~Q~~~~~~ilI~V~G~v~~~ 124 (177)
-|.++++|-...+..--.|+|..+.+
T Consensus 61 ~i~sv~~~ign~dRsqnkVSGK~Kkg 86 (172)
T KOG3266|consen 61 TIKSVTFQIGNCDRSQNKVSGKGKKG 86 (172)
T ss_pred ceeeeecccccchhhhheeccccccc
Confidence 35666666653444555666665544
No 43
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=23.23 E-value=45 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=14.6
Q ss_pred HHHHHHHHHH-----HHhcChhhHhccccCCce
Q psy6106 35 GREFVRQYYT-----LLNQAPAHLHRFYSENSL 62 (177)
Q Consensus 35 a~~Fv~~YY~-----~l~~~r~~L~~fY~~~S~ 62 (177)
|..|++.||+ ....+.+.|..||..+..
T Consensus 3 a~~Fv~~Y~t~~~~~~~~~r~~~L~~y~~~~~~ 35 (232)
T PF12642_consen 3 AQDFVKEYLTKSDDEAPEEREARLAPYLTSDLD 35 (232)
T ss_dssp HHHHHHHHT--B-TTGHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHcCCCCccChHHHHHHHHHHhccccc
Confidence 4455555555 444456678888755433
No 44
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.08 E-value=2.1e+02 Score=25.50 Aligned_cols=43 Identities=7% Similarity=0.284 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcChhhHh
Q psy6106 12 VGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLH 54 (177)
Q Consensus 12 ~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r~~L~ 54 (177)
+-+.|+.+.-.+++++|.+-......|+.++|..+...|.-+.
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir 172 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR 172 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 7889999999999999999999999999999999988877653
No 45
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=21.52 E-value=2e+02 Score=22.12 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred eecCHHHHHHHHhhC-C------CccccEEEeEEeeeeeCCCcEEEEEEeEeeeC
Q psy6106 77 QVVGQEQIHEHIQQL-N------FRDCHAKIRQVDSQATLGNGVVVQVSGELSNG 124 (177)
Q Consensus 77 ~~~G~~~I~~~l~~l-p------~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~ 124 (177)
...|.++|.+.+.+. . -.+.++.+..+.|--.-+.+=.+.|.|.+..+
T Consensus 87 ~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~~~in~~~~~~ 141 (156)
T PRK05988 87 QAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPAAMLDGEVHGR 141 (156)
T ss_pred hcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEECCEEeCC
Confidence 346888998888764 1 12456777777777666667778888876543
No 46
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=20.93 E-value=1.6e+02 Score=19.15 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhcCCCchh
Q psy6106 9 PQCVGREFVRQYYTLLNQAPAH 30 (177)
Q Consensus 9 ~~~~~~~fv~~yy~~~~~~~~~ 30 (177)
+...+..|.++|-+.++..|+.
T Consensus 11 A~aaA~dfAk~~~~f~~~nP~~ 32 (59)
T PF08916_consen 11 ARAAARDFAKAFRRFINENPQY 32 (59)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGG
T ss_pred HHHHHHHHHHHHHHHHhcCccc
Confidence 4567888889888888777765
No 47
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=20.32 E-value=5.8e+02 Score=22.44 Aligned_cols=99 Identities=15% Similarity=0.260 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcChhh-HhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCCCc-
Q psy6106 35 GREFVRQYYTLLNQAPAH-LHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNG- 112 (177)
Q Consensus 35 a~~Fv~~YY~~l~~~r~~-L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~- 112 (177)
+..|.+.||..+...=.. +..||-..=++...|. -+-.|.++.. .+=..|.+++--++.++.
T Consensus 172 ~~~F~~~dY~~l~~~f~~~~~~f~~~s~c~ik~G~-----------~~R~viDf~~-----~~y~~Vk~I~Le~i~~n~~ 235 (334)
T PF05941_consen 172 DTIFTEEDYDALEAYFLKIMDGFYINSLCCIKEGV-----------SRRNVIDFYK-----KEYVCVKSIELEQIGDNRF 235 (334)
T ss_pred CcccchhHHHHHHHHHHhhhhcccceeEEEEecCc-----------chhhhhhhcc-----cceEEEEEEEEEEecCCee
Confidence 357889999999875433 3566665546655441 1234444432 345578888888887774
Q ss_pred --EEEEEEeEee-eCC--C--CCceeEEEEEEEeeCCCcEEEEcc
Q psy6106 113 --VVVQVSGELS-NGG--Q--PMRRFTQTFVLAAQSPKKYYVHND 150 (177)
Q Consensus 113 --ilI~V~G~v~-~~~--~--~~r~FsqtFvL~~~~~~~y~I~nD 150 (177)
.+|+-.|... ..+ + ..|.+.-+||.++.. +.+.|..|
T Consensus 236 ~P~iiT~~g~~vlvrdv~hLi~sr~~vgsFV~Vkkk-~~~~iL~d 279 (334)
T PF05941_consen 236 LPKIITKSGDRVLVRDVDHLIRSRARVGSFVVVKKK-KNFLILVD 279 (334)
T ss_pred eeEEEeecCCEEEEcchhHHhHhhhccceEEEEEEe-ceEEEEcc
Confidence 6677777754 344 1 357888999999874 67777644
Done!