Query psy6106
Match_columns 177
No_of_seqs 107 out of 721
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:45:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 1.8E-42 6.3E-47 263.8 13.6 137 1-160 2-140 (140)
2 1gy6_A Nuclear transport facto 100.0 4.7E-39 1.6E-43 241.2 15.2 126 3-159 1-126 (127)
3 1zo2_A NTF2, nuclear transport 100.0 1.5E-38 5.1E-43 239.1 15.5 121 6-156 8-128 (129)
4 3ujm_A Rasputin; NTF2-like fol 100.0 3.5E-38 1.2E-42 234.3 13.5 119 8-155 2-120 (120)
5 1gy7_A Nuclear transport facto 100.0 4.3E-37 1.5E-41 229.9 15.4 117 32-157 6-124 (125)
6 2qiy_A UBP3-associated protein 100.0 2E-36 6.8E-41 233.6 14.5 128 32-159 12-151 (154)
7 3nv0_B NTF2-related export pro 100.0 1.3E-35 4.4E-40 229.4 15.9 118 28-156 30-154 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 2.2E-34 7.6E-39 219.0 15.9 119 29-157 11-138 (140)
9 1jkg_B TAP; NTF2-like domain, 99.9 1.2E-26 4E-31 191.7 13.6 131 28-160 11-173 (250)
10 1q40_B MEX67, mRNA export fact 99.9 7E-26 2.4E-30 183.7 13.2 132 28-161 10-213 (219)
11 1of5_A MRNA export factor MEX6 99.9 3.9E-26 1.3E-30 185.3 11.7 130 28-160 7-206 (221)
12 3nv0_A Nuclear RNA export fact 99.9 1.2E-22 4E-27 163.3 14.6 130 28-159 9-187 (205)
13 1q42_A MTR2, mRNA transport re 99.7 6.2E-18 2.1E-22 132.8 6.8 100 31-140 25-146 (201)
14 1of5_B MTR2, YKL186C, mRNA tra 99.6 1E-14 3.5E-19 113.4 11.6 103 28-140 12-121 (184)
15 4i4k_A Uncharacterized protein 98.2 4.8E-05 1.6E-09 56.3 13.7 113 32-153 18-138 (143)
16 3hx8_A MLR2180 protein, putati 97.9 0.00031 1.1E-08 49.4 11.9 115 30-154 3-125 (129)
17 3cu3_A Domain of unknown funct 97.9 0.00021 7.2E-09 53.9 11.5 115 33-155 16-138 (172)
18 3gzr_A Uncharacterized protein 97.8 0.00078 2.7E-08 50.0 13.1 115 34-156 7-131 (146)
19 3d9r_A Ketosteroid isomerase-l 97.8 0.00085 2.9E-08 47.6 12.7 114 33-155 11-133 (135)
20 2gxf_A Hypothetical protein YY 97.7 0.00094 3.2E-08 48.6 11.8 109 35-151 5-120 (142)
21 3h51_A Putative calcium/calmod 97.5 0.0034 1.2E-07 46.4 12.7 117 32-159 19-144 (156)
22 3rob_A Uncharacterized conserv 97.3 0.0069 2.3E-07 44.6 12.4 113 32-152 16-134 (139)
23 3b7c_A Uncharacterized protein 97.2 0.029 1E-06 39.6 15.6 106 35-152 7-120 (122)
24 2ux0_A Calcium-calmodulin depe 97.2 0.012 4.2E-07 42.4 12.8 116 33-155 13-137 (143)
25 3f7s_A Uncharacterized NTF2-li 97.1 0.025 8.7E-07 40.6 14.0 114 32-154 7-127 (142)
26 2rcd_A Uncharacterized protein 97.0 0.045 1.5E-06 38.9 14.6 109 35-154 16-126 (129)
27 3gwr_A Putative calcium/calmod 97.0 0.013 4.6E-07 43.2 11.9 112 36-155 11-128 (144)
28 2owp_A Hypothetical protein BX 97.0 0.059 2E-06 39.1 15.1 113 32-155 11-126 (129)
29 3duk_A NTF2-like protein of un 96.6 0.071 2.4E-06 38.3 12.8 107 34-154 13-123 (125)
30 3b8l_A Uncharacterized protein 96.5 0.066 2.3E-06 39.4 12.5 118 32-155 27-152 (163)
31 3bb9_A Putative orphan protein 96.5 0.035 1.2E-06 40.4 10.4 109 33-151 30-146 (148)
32 2rfr_A Uncharacterized protein 96.5 0.041 1.4E-06 39.9 10.7 114 33-157 19-144 (155)
33 2chc_A Protein RV3472; hypothe 96.3 0.12 4.2E-06 38.1 12.8 113 33-155 14-132 (170)
34 3soy_A NTF2-like superfamily p 96.2 0.096 3.3E-06 38.4 11.6 112 36-153 13-134 (145)
35 3fka_A Uncharacterized NTF-2 l 96.1 0.12 4.1E-06 36.8 11.3 105 34-154 10-119 (120)
36 3jum_A Phenazine biosynthesis 96.0 0.075 2.6E-06 41.4 10.5 104 31-136 39-145 (185)
37 3cnx_A Uncharacterized protein 95.9 0.13 4.4E-06 39.4 11.4 115 34-157 13-158 (170)
38 3dm8_A Uncharacterized protein 95.8 0.015 5.2E-07 42.3 5.5 99 36-138 7-112 (143)
39 1tp6_A Hypothetical protein PA 95.6 0.15 5.2E-06 36.6 10.2 108 35-151 12-125 (128)
40 3a76_A Gamma-hexachlorocyclohe 95.5 0.29 9.9E-06 36.7 11.8 115 33-155 31-154 (176)
41 3er7_A Uncharacterized NTF2-li 95.4 0.021 7.1E-07 41.9 4.9 110 37-156 6-127 (131)
42 3mg1_A OCP, orange carotenoid 95.3 0.14 4.7E-06 43.0 10.1 109 34-151 193-305 (323)
43 3dmc_A NTF2-like protein; stru 95.3 0.46 1.6E-05 34.1 11.9 62 27-92 6-68 (134)
44 2r4i_A Uncharacterized protein 95.2 0.44 1.5E-05 32.5 12.1 106 38-153 11-120 (123)
45 4h3u_A Hypothetical protein; s 95.2 0.15 5.1E-06 37.3 9.1 50 37-92 29-79 (158)
46 3blz_A NTF2-like protein of un 95.0 0.62 2.1E-05 32.9 12.8 113 32-156 11-126 (128)
47 2rgq_A Domain of unknown funct 94.7 0.77 2.6E-05 32.9 15.6 113 32-154 9-127 (144)
48 3ff0_A Phenazine biosynthesis 94.7 0.19 6.5E-06 38.3 8.7 87 31-122 17-107 (163)
49 1jkg_A P15; NTF2-like domain, 94.7 0.01 3.6E-07 43.9 1.5 25 8-32 12-36 (140)
50 3en8_A Uncharacterized NTF-2 l 94.6 0.13 4.3E-06 36.8 7.2 53 35-93 7-60 (128)
51 3gzb_A Putative snoal-like pol 94.3 0.2 6.8E-06 37.2 7.5 80 34-124 21-103 (154)
52 3nv0_B NTF2-related export pro 94.2 0.014 4.7E-07 44.3 1.2 23 9-31 33-55 (154)
53 3f14_A Uncharacterized NTF2-li 94.2 0.1 3.4E-06 36.2 5.7 90 37-138 4-100 (112)
54 1ohp_A Steroid delta-isomerase 94.2 0.35 1.2E-05 32.6 8.6 52 35-92 7-59 (125)
55 3f7x_A Putative polyketide cyc 94.1 0.3 1E-05 35.7 8.4 51 35-92 22-73 (151)
56 3h3h_A Uncharacterized snoal-l 93.9 0.14 4.8E-06 35.8 6.1 69 35-103 10-82 (122)
57 3fsd_A NTF2-like protein of un 93.4 1.4 4.8E-05 31.1 11.8 107 37-152 18-130 (134)
58 3ebt_A Uncharacterized NTF2-li 93.3 1.1 3.6E-05 31.1 9.9 56 37-92 7-63 (132)
59 1s5a_A Hypothetical protein YE 93.2 0.67 2.3E-05 32.8 8.9 55 36-92 13-68 (150)
60 3rga_A Epoxide hydrolase; NTF2 93.1 1.4 4.7E-05 35.8 11.7 61 26-92 131-192 (283)
61 1oh0_A Steroid delta-isomerase 93.1 0.49 1.7E-05 32.7 7.8 52 35-92 9-61 (131)
62 2a15_A Hypothetical protein RV 93.0 1.6 5.4E-05 30.5 11.5 57 36-92 10-68 (139)
63 1z1s_A Hypothetical protein PA 92.9 0.64 2.2E-05 34.1 8.6 55 36-92 26-81 (163)
64 3dxo_A Uncharacterized snoal-l 92.8 0.15 5E-06 36.0 4.7 64 36-107 6-77 (121)
65 1nww_A Limonene-1,2-epoxide hy 92.7 1.5 5.2E-05 31.0 10.2 50 36-92 25-75 (149)
66 3ef8_A Putative scyalone dehyd 92.4 2.2 7.6E-05 30.7 14.1 114 33-154 11-132 (150)
67 3ec9_A Uncharacterized NTF2-li 92.4 0.98 3.4E-05 31.8 8.7 54 36-92 15-70 (140)
68 2bng_A MB2760; epoxide hydrola 92.0 1.8 6.3E-05 30.8 10.0 51 35-92 17-68 (149)
69 2k54_A Protein ATU0742; protei 91.9 2.1 7E-05 29.4 9.8 50 36-91 6-56 (123)
70 3ke7_A Putative ketosteroid is 91.6 2.9 0.0001 30.3 12.2 99 48-155 30-130 (134)
71 2f86_B Hypothetical protein K1 91.5 3 0.0001 30.3 11.2 117 34-156 13-134 (143)
72 3g8z_A Protein of unknown func 91.2 1.4 4.8E-05 31.7 8.6 54 36-92 23-77 (148)
73 3i0y_A Putative polyketide cyc 90.8 3 0.0001 28.9 11.2 51 35-92 10-61 (140)
74 3mso_A Steroid delta-isomerase 90.4 0.37 1.3E-05 35.1 4.7 54 33-92 9-63 (143)
75 3fh1_A Uncharacterized NTF2-li 89.9 0.6 2.1E-05 32.7 5.4 54 34-90 18-72 (129)
76 3rga_A Epoxide hydrolase; NTF2 89.6 2.8 9.4E-05 34.0 9.9 52 35-92 8-60 (283)
77 3ff2_A Uncharacterized cystati 89.0 3.9 0.00013 27.7 10.0 49 37-91 6-55 (117)
78 3g16_A Uncharacterized protein 88.8 0.62 2.1E-05 35.0 5.0 57 32-92 9-66 (156)
79 1tuh_A BAL32A, hypothetical pr 88.7 3.2 0.00011 29.7 8.8 56 34-92 30-86 (156)
80 3f8x_A Putative delta-5-3-keto 88.5 0.41 1.4E-05 35.4 3.8 56 31-92 18-74 (148)
81 3fgy_A Uncharacterized NTF2-li 88.5 1.2 4.1E-05 31.0 6.2 54 36-92 8-62 (135)
82 3hk4_A MLR7391 protein; NTF2-l 88.5 5.4 0.00019 28.6 10.3 52 37-92 24-77 (136)
83 1jkg_B TAP; NTF2-like domain, 86.3 0.24 8.1E-06 40.1 1.4 22 6-27 11-32 (250)
84 3grd_A Uncharacterized NTF2-su 85.7 1.1 3.8E-05 31.1 4.6 52 38-92 9-62 (134)
85 3f40_A Uncharacterized NTF2-li 85.3 5 0.00017 27.7 7.9 49 36-92 9-58 (114)
86 2gey_A ACLR protein; alpha+bet 85.3 4.2 0.00014 29.3 7.8 58 36-102 7-67 (158)
87 3f8h_A Putative polyketide cyc 85.0 2.7 9.4E-05 30.3 6.7 49 37-92 22-71 (150)
88 3ehc_A Snoal-like polyketide c 82.4 0.89 3E-05 31.6 2.9 57 36-103 6-65 (128)
89 1of5_A MRNA export factor MEX6 82.1 0.55 1.9E-05 37.5 1.8 22 6-27 7-28 (221)
90 1sjw_A Nogalonic acid methyl e 81.1 3.2 0.00011 29.0 5.5 50 36-91 5-55 (144)
91 1q40_B MEX67, mRNA export fact 80.7 0.55 1.9E-05 37.4 1.3 22 6-27 10-31 (219)
92 2gex_A SNOL; alpha+beta barrel 80.6 13 0.00044 26.3 10.8 59 36-102 7-68 (152)
93 3k0z_A Putative polyketide cyc 80.3 8.5 0.00029 27.9 7.8 61 35-102 36-99 (159)
94 3f9s_A Putative polyketide cyc 80.2 4.5 0.00015 28.5 6.1 65 36-103 9-77 (146)
95 3kkg_A Putative snoal-like pol 80.1 4.9 0.00017 28.3 6.3 60 37-103 13-78 (146)
96 3ejv_A Uncharacterized protein 79.0 18 0.0006 27.0 13.1 73 33-107 26-107 (179)
97 2f99_A Aklanonic acid methyl e 77.6 2.5 8.6E-05 30.4 4.1 51 35-91 13-64 (153)
98 3e99_A Benzoate 1,2-dioxygenas 74.0 24 0.00083 26.1 12.3 128 34-162 9-158 (164)
99 3flj_A Uncharacterized protein 73.2 4 0.00014 30.4 4.3 50 36-91 21-71 (155)
100 3lyg_A NTF2-like protein of un 69.2 8.6 0.0003 27.6 5.0 49 39-93 8-61 (120)
101 3g0k_A Putative membrane prote 62.5 39 0.0013 24.0 10.0 51 32-91 26-78 (148)
102 3nv0_A Nuclear RNA export fact 47.7 6.8 0.00023 30.6 1.4 22 7-28 10-31 (205)
103 1of5_B MTR2, YKL186C, mRNA tra 45.7 9.8 0.00034 29.3 2.0 27 1-28 8-34 (184)
104 3ub1_A ORF13-like protein; NTF 39.1 1.5E+02 0.0051 23.8 9.2 36 28-63 150-186 (261)
105 2imj_A Hypothetical protein DU 37.5 25 0.00084 26.4 3.0 39 45-91 29-68 (166)
106 1q2h_A APS, adaptor protein wi 35.7 19 0.00064 23.4 1.8 24 8-31 14-37 (69)
107 1q42_A MTR2, mRNA transport re 29.5 25 0.00084 27.4 1.9 24 6-29 22-45 (201)
108 4gb5_A Uncharacterized protein 29.5 1.4E+02 0.0049 20.7 9.1 71 34-107 12-86 (159)
109 2b1x_B Naphthalene dioxygenase 29.0 1.6E+02 0.0055 21.1 15.0 124 31-155 11-159 (172)
110 4giw_A RUN and SH3 domain-cont 26.8 32 0.0011 26.3 2.2 29 36-64 130-158 (198)
111 3eby_A Beta subunit of A putat 26.3 1.8E+02 0.0061 20.8 12.8 122 33-155 14-151 (163)
112 3gzx_B Biphenyl dioxygenase su 25.0 2.1E+02 0.0074 21.2 15.2 128 30-157 20-175 (186)
113 2dwk_A Protein RUFY3; RUN doma 21.1 61 0.0021 24.3 2.7 42 38-92 118-159 (180)
114 2ia7_A Tail lysozyme, putative 20.0 2.3E+02 0.0078 19.7 5.8 52 81-137 76-130 (134)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=1.8e-42 Score=263.75 Aligned_cols=137 Identities=62% Similarity=1.021 Sum_probs=112.6
Q ss_pred CccccCCCHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecC
Q psy6106 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVG 80 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G 80 (177)
|||| +|+++.||++||+|||+ +|+++|+.|++||+++|.++|.+.+........+.|
T Consensus 2 ~~~~-~p~~~~vg~~Fv~~YY~----------------------~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G 58 (140)
T 3q90_A 2 MVME-KPSPLLVGREFVRQYYT----------------------LLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYG 58 (140)
T ss_dssp -------CHHHHHHHHHHHHHH----------------------HHHHCGGGGGGGEEEEEEEC----------CCCEEH
T ss_pred Cccc-CCCHHHHHHHHHHHHHH----------------------HHhcCHHHHHhhcccCceEEEEccCCCCceeecccC
Confidence 8999 99999999999999999 777899999999999999999664321122247899
Q ss_pred HHHHHHHHhhCCCccccEEEeEEeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeC--CCcEEEEcceEEeeccc
Q psy6106 81 QEQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQS--PKKYYVHNDIFRYQDFL 158 (177)
Q Consensus 81 ~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~--~~~y~I~nD~fr~~d~~ 158 (177)
+++|.++|.+||+++++|+|.++||||++++||+|+|+|.++.+++++|+|+|+|+|+|.+ +++|+|.||||||+|+.
T Consensus 59 ~~~I~~~l~~Lp~~~~~~~I~tvD~Qps~~~gilI~V~G~l~~~~~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~ 138 (140)
T 3q90_A 59 QKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEV 138 (140)
T ss_dssp HHHHHHHHHHTCCCSCEEEEEEEEEEECGGGCEEEEEEEEEECTTCCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC
T ss_pred HHHHHHHHHhCCCccceEEEEeEEEEEeCCCCEEEEEEEEEecCCCCccEEEEEEEEeecCCCCCCEEEEEEEeEeehhh
Confidence 9999999999999889999999999999999999999999999988899999999999985 58999999999999987
Q ss_pred CC
Q psy6106 159 VD 160 (177)
Q Consensus 159 ~~ 160 (177)
++
T Consensus 139 ~~ 140 (140)
T 3q90_A 139 FG 140 (140)
T ss_dssp --
T ss_pred cC
Confidence 64
No 2
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=4.7e-39 Score=241.18 Aligned_cols=126 Identities=26% Similarity=0.455 Sum_probs=114.9
Q ss_pred cccCCCHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHH
Q psy6106 3 MEVTPSPQCVGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 82 (177)
Q Consensus 3 ~~~~~~~~~~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~ 82 (177)
|+.+|+++.||++||+|||+ +|+++|+.|++||+++|.++|+| +.+.|++
T Consensus 1 m~~~p~~~~v~~~Fv~~YY~----------------------~~d~~r~~L~~~Y~~~S~ls~~g--------~~~~G~~ 50 (127)
T 1gy6_A 1 MGDKPIWEQIGSSFIQHYYQ----------------------LFDNDRTQLGAIYIDASCLTWEG--------QQFQGKA 50 (127)
T ss_dssp --CCCHHHHHHHHHHHHHHH----------------------HHHHHGGGGGGGEEEEEEEEETT--------EEEESHH
T ss_pred CCCCCCHHHHHHHHHHHHHH----------------------HHhCCHHHHHHhhCCCcEEEECC--------ccccCHH
Confidence 56678888888888888887 77789999999999999999977 7899999
Q ss_pred HHHHHHhhCCCccccEEEeEEeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEeecccC
Q psy6106 83 QIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDFLV 159 (177)
Q Consensus 83 ~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d~~~ 159 (177)
+|.++|.+||+++++|+|.++||||++++||+|+|+|.++.++.++|+|+|+|+|+|.+ ++|+|.||+|||++...
T Consensus 51 ~I~~~l~~Lp~~~~~h~i~t~d~qp~~~~~ili~V~G~~~~~~~~~~~F~qtF~L~p~~-~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 51 AIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIN-DAWVCTNDMFRLALHNF 126 (127)
T ss_dssp HHHHHHHHCSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEETTSCCEEEEEEEEEEEET-TEEEEEEEEEEECCCCC
T ss_pred HHHHHHHhCCCcceEEEEEEEEEEEeCCCcEEEEEEEEEEECCCCcceEeEEEEEEEeC-CEEEEEEEEEEEEcccc
Confidence 99999999999789999999999999989999999999999888899999999999996 89999999999998754
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=1.5e-38 Score=239.09 Aligned_cols=121 Identities=27% Similarity=0.495 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHH
Q psy6106 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIH 85 (177)
Q Consensus 6 ~~~~~~~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~ 85 (177)
+|+++.||++||+|||+ +|+++|+.|++||+++|.++|+| +.+.|+++|.
T Consensus 8 ~p~~~~v~~~Fv~~YY~----------------------~~d~~r~~L~~~Y~~~S~ls~~g--------~~~~G~~~I~ 57 (129)
T 1zo2_A 8 NPQFDQIGKQFVQHYYQ----------------------TFQTNRPALGGLYGPQSMLTWED--------TQFQGQANIV 57 (129)
T ss_dssp CTTHHHHHHHHHHHHHH----------------------HHHHCGGGGGGGEEEEEEEEETT--------EEEESHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----------------------HHhCCHHHHHHhhCCCcEEEECC--------ceeccHHHHH
Confidence 56666666666666666 88899999999999999999977 7899999999
Q ss_pred HHHhhCCCccccEEEeEEeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEeec
Q psy6106 86 EHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 86 ~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d 156 (177)
++|.+||+++++|+|.++||||++++||+|+|+|.++.+++++|+|+|+|+|+|.++++|+|.||||||++
T Consensus 58 ~~l~~Lp~~~~~h~i~t~D~qp~~~~gilI~V~G~~~~~~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 58 NKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp HHHHHHCCSCEEEEEEEEEEEECTBSSEEEEEEEEEEETTCCCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred HHHHhCCCcceEEEEEEEEEEEeCCCcEEEEEEEEEEECCCCcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 99999998889999999999999989999999999999988899999999999996589999999999985
No 4
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-38 Score=234.30 Aligned_cols=119 Identities=83% Similarity=1.270 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHH
Q psy6106 8 SPQCVGREFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEH 87 (177)
Q Consensus 8 ~~~~~~~~fv~~yy~~~~~~~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~ 87 (177)
||+.||++||+|||+ +|+++|+.|++||+++|.++|. ++..+.|+++|.++
T Consensus 2 s~~~vg~~Fv~~YY~----------------------~ld~~r~~L~~~Y~~~s~~~~~-------~~~~~~G~~~I~~~ 52 (120)
T 3ujm_A 2 SHMSVGREFVRQYYT----------------------LLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQREIHNR 52 (120)
T ss_dssp --CCHHHHHHHHHHH----------------------HHHHCGGGGGGGEEEEEEEEET-------TCCCEESHHHHHHH
T ss_pred CHHHHHHHHHHHHHH----------------------HHhcCHHHHhhhecccceEEEc-------CCcEecCHHHHHHH
Confidence 455666666666666 8889999999999999998874 34789999999999
Q ss_pred HhhCCCccccEEEeEEeeeeeCCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 88 IQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 88 l~~lp~~~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
|.+||+.+++|+|.++||||++++||+|+|+|.++.++++.|+|+|+|+|+|.++++|+|.||||||.
T Consensus 53 l~~Lpf~~~~~~I~t~D~Qp~~~~gili~V~G~l~~~~~~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 53 IQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp HHHHCCCSCEEEEEEEEEEEEGGGEEEEEEEEEEESTTCCCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred HHcCCCcceEEEEecccceEcCCCCEEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 99999988999999999999999999999999999998889999999999998668999999999984
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=4.3e-37 Score=229.92 Aligned_cols=117 Identities=27% Similarity=0.510 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeC-C
Q psy6106 32 HRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATL-G 110 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~-~ 110 (177)
++||+.||++||++|+++|+.|++||+++|.++|+| +.+.|+++|.++|.+||+++++|+|.++||||+. +
T Consensus 6 ~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g--------~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~ 77 (125)
T 1gy7_A 6 NTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFET--------SQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPY 77 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETT--------EEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECC--------cEecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCC
Confidence 334444444444488899999999999999999977 7899999999999999998899999999999985 5
Q ss_pred CcEEEEEEeEeeeCCC-CCceeEEEEEEEeeCCCcEEEEcceEEeecc
Q psy6106 111 NGVVVQVSGELSNGGQ-PMRRFTQTFVLAAQSPKKYYVHNDIFRYQDF 157 (177)
Q Consensus 111 ~~ilI~V~G~v~~~~~-~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d~ 157 (177)
+||+|+|+|.++.+++ ++|+|+|+|+|+|.+ ++|+|.||+|||++.
T Consensus 78 ~gili~V~G~~~~~~~~~~~~F~qtF~L~p~~-~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 78 GDVLVMITGDLLIDEEQNPQRFSQVFHLIPDG-NSYYVFNDIFRLNYS 124 (125)
T ss_dssp SCEEEEEEEEEEETTCSSCEEEEEEEEEEEET-TEEEEEEEEEEEECC
T ss_pred CeEEEEEEEEEEECCCCCCccEeEEEEEEEeC-CEEEEEEEEEEEecC
Confidence 8999999999999887 899999999999995 699999999999975
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=100.00 E-value=2e-36 Score=233.62 Aligned_cols=128 Identities=25% Similarity=0.447 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCC-------CcccceecCHHHHHHHHhhC--CCccccEEEeE
Q psy6106 32 HRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAP-------NRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQ 102 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~-------~~~~~~~~G~~~I~~~l~~l--p~~~~~~~I~s 102 (177)
++||+.||++||+.|+++|+.|++||+++|.++|+...+. ...+..+.|+++|.++|.+| |+++++|+|.+
T Consensus 12 ~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h~I~s 91 (154)
T 2qiy_A 12 QDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDT 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEEEEEE
Confidence 3344444444444888999999999999999999853211 11267999999999999999 98889999999
Q ss_pred EeeeeeCC--CcEEEEEEeEeeeCCCCCceeEEEEEEEeeCC-CcEEEEcceEEeecccC
Q psy6106 103 VDSQATLG--NGVVVQVSGELSNGGQPMRRFTQTFVLAAQSP-KKYYVHNDIFRYQDFLV 159 (177)
Q Consensus 103 vD~Q~~~~--~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~-~~y~I~nD~fr~~d~~~ 159 (177)
+||||+.+ +||+|+|+|.++.+++++|+|+|+|+|+|.++ ++|+|.||||||+++.+
T Consensus 92 ~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~ 151 (154)
T 2qiy_A 92 IDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNSF 151 (154)
T ss_dssp EEEEEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC--
T ss_pred EEEEEccCCCCEEEEEEEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEccee
Confidence 99999977 89999999999998888999999999999965 68999999999998754
No 7
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-35 Score=229.35 Aligned_cols=118 Identities=27% Similarity=0.513 Sum_probs=110.9
Q ss_pred chhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeee
Q psy6106 28 PAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQA 107 (177)
Q Consensus 28 ~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~ 107 (177)
.+.+++||+.||++||..|+++|+.|++||+++|.++|+| +.+.|+++|.++|.+||+ ++|+|.++||||
T Consensus 30 ~~~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g--------~~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp 99 (154)
T 3nv0_B 30 DEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNG--------NPINGYDSICEFMKALPS--TQHDIQSLDAQR 99 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETT--------EEEESHHHHHHHHHHSCC--EEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECC--------eecccHHHHHHHHHhCCC--eEEEEEEEEEEE
Confidence 3678899999999999999999999999999999999977 788999999999999994 899999999999
Q ss_pred eC-------CCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEeec
Q psy6106 108 TL-------GNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 108 ~~-------~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d 156 (177)
++ +++|+|+|+|.++.++.++|+|+|+|+|+|.+ ++|+|.||||||+|
T Consensus 100 ~~~~~~~q~~~~ilI~V~G~l~~~~~~~r~F~QtFvL~p~~-~~y~V~NDifR~vd 154 (154)
T 3nv0_B 100 LPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVED-GKYKVKSDRFRYVD 154 (154)
T ss_dssp CCTTCCGGGTTCEEEEEEEEEEETTSCCEEEEEEEEEEEET-TEEEEEEEEEEECC
T ss_pred cCccccCCCCCeEEEEEEEEEEECCCCceeEEEEEEEEEeC-CEEEEEeeEEEecC
Confidence 98 67999999999999988899999999999995 89999999999986
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=100.00 E-value=2.2e-34 Score=218.95 Aligned_cols=119 Identities=31% Similarity=0.529 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeee
Q psy6106 29 AHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQAT 108 (177)
Q Consensus 29 ~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~ 108 (177)
+.+++||+.||++||++|+++|+.|++||+++|.++|+| +.+.|+++|.++|.+||+ ++|+|.++||||+
T Consensus 11 ~~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g--------~~~~G~~~I~~~l~~Lp~--~~h~i~s~d~q~~ 80 (140)
T 1jkg_A 11 DQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEMLPS--SEFQISVVDCQPV 80 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETT--------EEEESHHHHHHHHHHSCC--EEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECC--------eeecCHHHHHHHHHhCCC--ceeEEEEEEEEEc
Confidence 568899999999999999999999999999999999977 789999999999999996 4699999999999
Q ss_pred C------CCcEEEEEEeEeeeCCCCCceeEEEEEEEeeC---CCcEEEEcceEEeecc
Q psy6106 109 L------GNGVVVQVSGELSNGGQPMRRFTQTFVLAAQS---PKKYYVHNDIFRYQDF 157 (177)
Q Consensus 109 ~------~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~---~~~y~I~nD~fr~~d~ 157 (177)
. +++|+|+|+|.++.+++++|+|+|+|+|+|++ +++|+|.||+|||+++
T Consensus 81 ~~~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 81 HDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp CTTTSTTCCEEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CCcccCCCCeEEEEEEEEEEECCCCceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 6 47999999999999988899999999999963 3789999999999987
No 9
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.94 E-value=1.2e-26 Score=191.66 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=110.9
Q ss_pred chhHHHHHHHHHHHHHHHHhcC-hhhHhccccCCceEEecCCCCC--------------Cc-----------ccceecCH
Q psy6106 28 PAHLHRVGREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAP--------------NR-----------ETKQVVGQ 81 (177)
Q Consensus 28 ~~~~~~va~~Fv~~YY~~l~~~-r~~L~~fY~~~S~~~~~g~~~~--------------~~-----------~~~~~~G~ 81 (177)
++.++++|..||++||..+|++ |..|.++|+++|.++|...... ++ ....++|+
T Consensus 11 ~~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~ 90 (250)
T 1jkg_B 11 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTR 90 (250)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESH
T ss_pred CHHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCH
Confidence 4667888888888888899998 9999999999999999742100 00 11478999
Q ss_pred HHHHHHHhhCCCccccEEEe--EEeeeeeCCCcEEEEEEeEeeeCC----CCCceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 82 EQIHEHIQQLNFRDCHAKIR--QVDSQATLGNGVVVQVSGELSNGG----QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 82 ~~I~~~l~~lp~~~~~~~I~--svD~Q~~~~~~ilI~V~G~v~~~~----~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
++|.++|.+|| +++|.+. ++|||+..+++++|+|+|.++..+ .+.|.|+|||+|+|.++++|+|.||+||+.
T Consensus 91 ~~I~~~l~~LP--~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~ 168 (250)
T 1jkg_B 91 LNVVAFLNELP--KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVR 168 (250)
T ss_dssp HHHHHHHTTSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEE
T ss_pred HHHHHHHHhCC--CeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEE
Confidence 99999999999 5788887 899999988899999999999865 468999999999998778999999999999
Q ss_pred cccCC
Q psy6106 156 DFLVD 160 (177)
Q Consensus 156 d~~~~ 160 (177)
++...
T Consensus 169 ~~s~~ 173 (250)
T 1jkg_B 169 NASSE 173 (250)
T ss_dssp ECCHH
T ss_pred CCChh
Confidence 88654
No 10
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.93 E-value=7e-26 Score=183.65 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCC---------------CCc-------------------
Q psy6106 28 PAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDA---------------PNR------------------- 73 (177)
Q Consensus 28 ~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~---------------~~~------------------- 73 (177)
++.++++|..||++||.++|++|..|..||+++|.|+|.+... ..+
T Consensus 10 ~~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r 89 (219)
T 1q40_B 10 DEDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKAR 89 (219)
T ss_dssp ---CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhh
Confidence 3567888999999999999999999999999999999975210 000
Q ss_pred ccceecCHHHHHHHHhhCCCccccEEE------eEEeeeeeC-CCcEEEEEEeEeeeCC---------------------
Q psy6106 74 ETKQVVGQEQIHEHIQQLNFRDCHAKI------RQVDSQATL-GNGVVVQVSGELSNGG--------------------- 125 (177)
Q Consensus 74 ~~~~~~G~~~I~~~l~~lp~~~~~~~I------~svD~Q~~~-~~~ilI~V~G~v~~~~--------------------- 125 (177)
......|+++|.++|.+|| +++|++ .++|||+.+ .++|+|+|+|.|+..+
T Consensus 90 ~~~l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 1q40_B 90 MAKLSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRY 167 (219)
T ss_dssp HHTCEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCS
T ss_pred hhhhccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCcccccccccccccccccccc
Confidence 0126789999999999999 689999 699999764 4789999999998733
Q ss_pred ----------CCCceeEEEEEEEeeCCCcEEEEcceEEeecccCCc
Q psy6106 126 ----------QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDFLVDE 161 (177)
Q Consensus 126 ----------~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d~~~~~ 161 (177)
...|.|+|||||+|.++++|+|.||+|++......+
T Consensus 168 ~~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~~~~ 213 (219)
T 1q40_B 168 HSGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTSDF 213 (219)
T ss_dssp SSSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCSCC
T ss_pred ccccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCCCcc
Confidence 257999999999998778999999999999886664
No 11
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.93 E-value=3.9e-26 Score=185.33 Aligned_cols=130 Identities=18% Similarity=0.350 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCC------------CC-------------------cccc
Q psy6106 28 PAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDA------------PN-------------------RETK 76 (177)
Q Consensus 28 ~~~~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~------------~~-------------------~~~~ 76 (177)
++.++++|..||++||.++|++|..|..||+++|.|+|.+... .. ....
T Consensus 7 d~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~ 86 (221)
T 1of5_A 7 NDALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQR 86 (221)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC-------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhh
Confidence 3457788888888888899999999999999999999976210 00 1124
Q ss_pred eecCHHHHHHHHhhCCCccccEEE------eEEeeeeeCC-CcEEEEEEeEeeeCCC-----------------------
Q psy6106 77 QVVGQEQIHEHIQQLNFRDCHAKI------RQVDSQATLG-NGVVVQVSGELSNGGQ----------------------- 126 (177)
Q Consensus 77 ~~~G~~~I~~~l~~lp~~~~~~~I------~svD~Q~~~~-~~ilI~V~G~v~~~~~----------------------- 126 (177)
.+.|+++|.++|.+|| +++|+| .++|||+.+. ++|+|+|+|.|++.+.
T Consensus 87 l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (221)
T 1of5_A 87 LSIGQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHG 164 (221)
T ss_dssp -CBHHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-------------------------
T ss_pred hccCHHHHHHHHHhCC--CeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccc
Confidence 7889999999999999 588999 6999999976 6999999999998543
Q ss_pred ---------CCceeEEEEEEEeeCCCcEEEEcceEEeecccCC
Q psy6106 127 ---------PMRRFTQTFVLAAQSPKKYYVHNDIFRYQDFLVD 160 (177)
Q Consensus 127 ---------~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d~~~~ 160 (177)
..|.|+|||||+|. +++|+|.||+|++......
T Consensus 165 ~~~~~~~~~~~rsF~RTFvL~P~-~~~~~I~nD~l~ir~~s~~ 206 (221)
T 1of5_A 165 YNSTSNNKLSKKSFDRTWVIVPM-NNSVIIASDLLTVRAYSTG 206 (221)
T ss_dssp ----CCSCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECCCC
T ss_pred ccccccccCCccceEEEEEEEec-CCeEEEEeeEEEeecCCCc
Confidence 46999999999999 7999999999999876554
No 12
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.89 E-value=1.2e-22 Score=163.32 Aligned_cols=130 Identities=21% Similarity=0.282 Sum_probs=107.3
Q ss_pred chhHHHHHHHHHHHHHHHHhcC-----hhhHhcccc-CCceEEecC---C-CC---------------------------
Q psy6106 28 PAHLHRVGREFVRQYYTLLNQA-----PAHLHRFYS-ENSLFIHGG---L-DA--------------------------- 70 (177)
Q Consensus 28 ~~~~~~va~~Fv~~YY~~l~~~-----r~~L~~fY~-~~S~~~~~g---~-~~--------------------------- 70 (177)
++.+..++..|+++||..+|++ |..|..+|+ ++|+|+..- . +.
T Consensus 9 s~~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~ 88 (205)
T 3nv0_A 9 SDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYF 88 (205)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhcccccccccc
Confidence 4678889999999999999997 999999999 689888641 1 00
Q ss_pred -CCcccceecCHHHHHHHHhhCCCccccEEEeE--EeeeeeCCCcEEEEEEeEeeeC---------CCCCceeEEEEEEE
Q psy6106 71 -PNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQ--VDSQATLGNGVVVQVSGELSNG---------GQPMRRFTQTFVLA 138 (177)
Q Consensus 71 -~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~s--vD~Q~~~~~~ilI~V~G~v~~~---------~~~~r~FsqtFvL~ 138 (177)
..+.....+|+++|.++|.+|| .++|.+.+ +||||.++++++|+|+|.++.. +..+|.|+|+|+|+
T Consensus 89 ~~~r~~~L~~G~~~I~~~L~~LP--~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~ 166 (205)
T 3nv0_A 89 AANRASRISHGAMDIVVALSRLP--ATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVA 166 (205)
T ss_dssp TTSSCCSCEEHHHHHHHHHHHSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEE
T ss_pred HHHHHHHHhhCHHHHHHHHHhCC--CeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEE
Confidence 0112246689999999999999 57888875 8999999889999999999976 24579999999999
Q ss_pred eeCCCcEEEEcceEEeecccC
Q psy6106 139 AQSPKKYYVHNDIFRYQDFLV 159 (177)
Q Consensus 139 ~~~~~~y~I~nD~fr~~d~~~ 159 (177)
|.++|+|+|.||+|.+....+
T Consensus 167 P~~~g~~~I~ND~L~Ir~~s~ 187 (205)
T 3nv0_A 167 PRGEGKVAIVSDQLFISSMSK 187 (205)
T ss_dssp ECSTTCEEEEEEEEEEECCCH
T ss_pred ECCCCcEEEEecEEEeeCCCH
Confidence 987789999999998876543
No 13
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.72 E-value=6.2e-18 Score=132.84 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHhcChh-----hHh------ccc----cCCceEEecCCCCCCccccee------cCHHHHHHHHh
Q psy6106 31 LHRVGREFVRQYYTLLNQAPA-----HLH------RFY----SENSLFIHGGLDAPNRETKQV------VGQEQIHEHIQ 89 (177)
Q Consensus 31 ~~~va~~Fv~~YY~~l~~~r~-----~L~------~fY----~~~S~~~~~g~~~~~~~~~~~------~G~~~I~~~l~ 89 (177)
-.+.|+.|++.||..||.+|. .|. ++| .+.|.++||| +.+ .|+++|+++|.
T Consensus 25 ~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNG--------np~~~~~~~~gr~~fqk~w~ 96 (201)
T 1q42_A 25 PTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNG--------QPIIPSPQEDCKLQFQKKWL 96 (201)
T ss_dssp GGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETT--------EECCCCSSCCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcC--------cccccccccccHHHHHHHHH
Confidence 467888999999999999886 677 788 7889999998 677 89999999999
Q ss_pred hCCCccccEEEeEEeeeeeCC-CcEEEEEEeEeeeCCCCCceeEEEEEEEee
Q psy6106 90 QLNFRDCHAKIRQVDSQATLG-NGVVVQVSGELSNGGQPMRRFTQTFVLAAQ 140 (177)
Q Consensus 90 ~lp~~~~~~~I~svD~Q~~~~-~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~ 140 (177)
.+| .+.|.|.++||||+++ +.++|.|.|.|++++++.++|.|+|+|.+.
T Consensus 97 ~lP--~SqHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQsf~Lta~ 146 (201)
T 1q42_A 97 QTP--LSSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGESADLFQE 146 (201)
T ss_dssp TSC--CEEEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSCCC-----
T ss_pred hCC--CcceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCCcEEEecc
Confidence 999 5899999999999975 469999999999999999999999999865
No 14
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.59 E-value=1e-14 Score=113.37 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHHHHHHhcCh-----hhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHh-hCCCccccEEEe
Q psy6106 28 PAHLHRVGREFVRQYYTLLNQAP-----AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ-QLNFRDCHAKIR 101 (177)
Q Consensus 28 ~~~~~~va~~Fv~~YY~~l~~~r-----~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~-~lp~~~~~~~I~ 101 (177)
+..-.++|..||++||..|+..| ..|..|+.+.|.+++|| +++.++.+.++.|. ++| .++|+|.
T Consensus 12 ~~~~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG--------~p~a~p~~fqeiw~~Q~p--~T~hel~ 81 (184)
T 1of5_B 12 DANQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNA--------TPFAQATVFLQMWQNQVV--QTQHALT 81 (184)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETT--------EEESCHHHHHHHHHHHSC--CCEEEEE
T ss_pred CccchhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECC--------eEcCCHHHHHHHHHhcCC--CceEEEE
Confidence 34455788999999999999987 77889988888999988 88899999999999 778 5799999
Q ss_pred EEeeeeeCC-CcEEEEEEeEeeeCCCCCceeEEEEEEEee
Q psy6106 102 QVDSQATLG-NGVVVQVSGELSNGGQPMRRFTQTFVLAAQ 140 (177)
Q Consensus 102 svD~Q~~~~-~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~ 140 (177)
++|||-++. ++|+|+|+|.|+++++..-+|.++|+|.|.
T Consensus 82 S~D~HVIngsgsivv~VsgkVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 82 GVDYHAIPGSGTLICNVNCKVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp EEEEEEETTTTEEEEEEEEEEECC----------------
T ss_pred eEEEEEECCCCeEEEEEEEEEEECCCCCCCCCCeEEECCC
Confidence 999999864 579999999999986654699999999986
No 15
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=98.22 E-value=4.8e-05 Score=56.32 Aligned_cols=113 Identities=10% Similarity=0.120 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC---CCccccEEEeEEeeee
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL---NFRDCHAKIRQVDSQA 107 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l---p~~~~~~~I~svD~Q~ 107 (177)
.......+..|+..++. +.+.|..+|.+++.+...| ....|+++|.+.+... ++....+.+...+...
T Consensus 18 ~~~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g--------~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (143)
T 4i4k_A 18 LAAVAALPARIVAAWADHDADRFADVFAEDGTMILPG--------LFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARL 89 (143)
T ss_dssp HHHHHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETT--------EEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCC--------CeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEE
Confidence 34556788899999996 6788999999999997544 5688999999988764 2233455555555555
Q ss_pred eCCCcEEEEEEeEeeeCCC----CCceeEEEEEEEeeCCCcEEEEcceEE
Q psy6106 108 TLGNGVVVQVSGELSNGGQ----PMRRFTQTFVLAAQSPKKYYVHNDIFR 153 (177)
Q Consensus 108 ~~~~~ilI~V~G~v~~~~~----~~r~FsqtFvL~~~~~~~y~I~nD~fr 153 (177)
..++..++...|.+..++. +.+.+.+|+++++. +++|.|....=.
T Consensus 90 ~~~d~A~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~-~g~WrI~~~h~S 138 (143)
T 4i4k_A 90 LGDGIALLITEGGILAPGETEASGDGAVRASWLAVEQ-DGQWRLAAYQNS 138 (143)
T ss_dssp EETTEEEEEEEEEEECTTCSSCCGGGEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred cCCCEEEEEeccceecCCCCCCCcccceEEEEEEEEE-CCcEEEEEecCC
Confidence 4455444455565655543 23667889999988 589999876543
No 16
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=97.88 E-value=0.00031 Score=49.41 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCc-cccEEEeEEeeee
Q psy6106 30 HLHRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR-DCHAKIRQVDSQA 107 (177)
Q Consensus 30 ~~~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~-~~~~~I~svD~Q~ 107 (177)
.+.......+.+|+..++. +.+.|..+|.+++.+...+ +..+.|+++|.+.+..+... ..++.+.......
T Consensus 3 ~~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~-------~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 75 (129)
T 3hx8_A 3 SAKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPD-------MARVDGRQNIQKLWQGAMDMGISELKLTTLDVQE 75 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT-------SCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCC-------CCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEc
Confidence 3556677888889999986 6788999999999985322 24678999999988865311 1456666555554
Q ss_pred eCCCcEEEEEEeEeee-----CCCCC-ceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 108 TLGNGVVVQVSGELSN-----GGQPM-RRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 108 ~~~~~ilI~V~G~v~~-----~~~~~-r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
.+ +..+ +.|.+.. ++.+. ..-.-+.++++.++|+|.|..|.+.-
T Consensus 76 ~g-d~A~--~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~~ 125 (129)
T 3hx8_A 76 SG-DFAF--ESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWNS 125 (129)
T ss_dssp ET-TEEE--EEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CC-CEEE--EEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeeccc
Confidence 33 3222 2222222 23221 12233455555536899999998753
No 17
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=97.86 E-value=0.00021 Score=53.94 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC---CccccEEEeEEeeeee
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN---FRDCHAKIRQVDSQAT 108 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp---~~~~~~~I~svD~Q~~ 108 (177)
......+..|+..++. +.+.+..+|.+++.+... .+....|+++|.+.+.... +...++.+...+....
T Consensus 16 ~aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~-------~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~ 88 (172)
T 3cu3_A 16 SAIRAFHRQMIDAWNRGSGEGFAAPFSETADFITF-------EGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFV 88 (172)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECT-------TCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeC-------CCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEe
Confidence 4566788999999986 778899999999998741 2267899999999887641 2223444433444443
Q ss_pred CCCcEEEEEEeEeeeCCC----CCceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 109 LGNGVVVQVSGELSNGGQ----PMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~~~~----~~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
.++..++.+.+.+...+. +......++++++. +|+|.|.+.....+
T Consensus 89 ~~d~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~-dG~WrI~~~~~s~~ 138 (172)
T 3cu3_A 89 NSQLALMLVVIRVILPGQTETSASRDSLPLYVVTKG-DEGWQIEGLLNTRK 138 (172)
T ss_dssp ETTEEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEE-TTEEEEEEEECCBC
T ss_pred CCCEEEEEEEEEEEeCCCCCcCCccceEEEEEEEEe-CCeEEEEEEEcCcc
Confidence 344445555555665543 23456677888877 68999998776644
No 18
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=97.77 E-value=0.00078 Score=50.03 Aligned_cols=115 Identities=12% Similarity=0.210 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC---CCccccEEEeEEeeeeeC
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL---NFRDCHAKIRQVDSQATL 109 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l---p~~~~~~~I~svD~Q~~~ 109 (177)
.-..++..|...++. +.+.+..+|.+++.+.. ..+....|+++|.+.+... .++..++.+.........
T Consensus 7 aI~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~-------~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (146)
T 3gzr_A 7 AIQALIQAYFTAWNTNAPERFAEIFWPDGSWVN-------VVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIA 79 (146)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSGGGEEEEEEEEC-------TTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhccCCeEEEc-------CCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcC
Confidence 346778888889986 78889999999999862 1236788999999988753 233344454444444444
Q ss_pred CCcEEEEEEeEee----eCCCC--CceeEEEEEEEeeCCCcEEEEcceEEeec
Q psy6106 110 GNGVVVQVSGELS----NGGQP--MRRFTQTFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 110 ~~~ilI~V~G~v~----~~~~~--~r~FsqtFvL~~~~~~~y~I~nD~fr~~d 156 (177)
++..++.+...+. .++.+ .....++++|++. +++|.|....-..++
T Consensus 80 ~D~A~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~-dg~WrI~a~h~s~v~ 131 (146)
T 3gzr_A 80 PGSALAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVER-EGVWRFIHGHNTIVN 131 (146)
T ss_dssp TTEEEEEEEEEECCEECTTCCEECCEEEEEEEEEEEE-TTEEEEEEEEEEECC
T ss_pred CCEEEEEEEEEecceeCCCCCcCCccCcEEEEEEEEE-CCEEEEEEEecccCc
Confidence 4444443333332 23332 2467899999988 589999999887663
No 19
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=97.76 E-value=0.00085 Score=47.56 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC--c-cccEEEeEEeeeee
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF--R-DCHAKIRQVDSQAT 108 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~--~-~~~~~I~svD~Q~~ 108 (177)
......+.+|+..++. +.+.+..+|.+++.+...+ +....|+++|.+.+..+.. . ..++.+..+ ...
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~-------~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i--~~~ 81 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPG-------RPAAVGKDELAEVYLSVFETVGFDMAYEIKEV--VQT 81 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTT-------SCCEESHHHHHHHHHHHHHHEEEEEEEEEEEE--EEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCC-------CCcccCHHHHHHHHHHHHhhcCCceeEEEEEE--EEe
Confidence 3456778888889986 6788999999999886433 1245799999999887531 0 122223222 221
Q ss_pred CCCcEEEEE--EeEeeeC-CCCC--ceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 109 LGNGVVVQV--SGELSNG-GQPM--RRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 109 ~~~~ilI~V--~G~v~~~-~~~~--r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
.++..++.. .|.+... +.++ ....-+++++...+|+|.|..+.|..+
T Consensus 82 ~gd~a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 82 SADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp ETTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred cCCEEEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 223232222 2333322 2221 224456777765368999999999765
No 20
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=97.65 E-value=0.00094 Score=48.61 Aligned_cols=109 Identities=12% Similarity=0.129 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC---ccccEEEeEEeeeeeCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF---RDCHAKIRQVDSQATLG 110 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~---~~~~~~I~svD~Q~~~~ 110 (177)
....+..|+..++. +.+.+..+|.+++.+... .+....|+++|.+.+..+.. ...++.+..+.....+
T Consensus 5 I~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~-------~g~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~g- 76 (142)
T 2gxf_A 5 LKDIISACDLAIQNEDFDTLMNYYSEDAVLVVK-------PGMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAG- 76 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECS-------SSCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEET-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcC-------CCCcccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcC-
Confidence 45667888889886 778899999999998632 23578999999999997542 1234445555555443
Q ss_pred CcEEEEEEeEeee--CCCC-CceeEEEEEEEeeCCCcEEEEcce
Q psy6106 111 NGVVVQVSGELSN--GGQP-MRRFTQTFVLAAQSPKKYYVHNDI 151 (177)
Q Consensus 111 ~~ilI~V~G~v~~--~~~~-~r~FsqtFvL~~~~~~~y~I~nD~ 151 (177)
+..++.....+.. ++.+ .....-++++++..+|+|.|.-|.
T Consensus 77 d~A~~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~ 120 (142)
T 2gxf_A 77 DTVLVLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDN 120 (142)
T ss_dssp TEEEEEEEEECCC---------EEEEEEEEEECTTSCEEEEEEE
T ss_pred CEEEEEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEEC
Confidence 3333333333322 2332 122234777877556889997775
No 21
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=97.46 E-value=0.0034 Score=46.39 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCc--cccEEEeEEeeeee
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR--DCHAKIRQVDSQAT 108 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~--~~~~~I~svD~Q~~ 108 (177)
+......+.+|+..++. +.+.|..+|.+++.+... ..+....|+++|.+.+..+... ...+....+ +..
T Consensus 19 ~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~------~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i--~~~ 90 (156)
T 3h51_A 19 AREVAALFDTWNAALATGNPHKVADLYAPDGVLLPT------VSNEVRASREQIENYFEMFLTKKPKGVINYRTV--RLL 90 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECS------SCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEE--EEC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecC------CCCccccCHHHHHHHHHHHHhhCCCCcccceEE--EEe
Confidence 35567778888888886 778899999999987521 1124678999999988875311 122222222 222
Q ss_pred CCCcEEEEEEeEeee-----CCCC-CceeEEEEEEEeeCCCcEEEEcceEEeecccC
Q psy6106 109 LGNGVVVQVSGELSN-----GGQP-MRRFTQTFVLAAQSPKKYYVHNDIFRYQDFLV 159 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~-----~~~~-~r~FsqtFvL~~~~~~~y~I~nD~fr~~d~~~ 159 (177)
.++.. .+.|.+.+ ++.+ ...-..++++++. +|+|.|..+....+...+
T Consensus 91 ~gd~A--~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~-dG~WkIv~~H~S~~p~~~ 144 (156)
T 3h51_A 91 DDDSA--VDAGVYTFTLTDKNGKKSDVQARYTFVYEKR-DGKWLIINHHSSAMPEVD 144 (156)
T ss_dssp SSSEE--EEEEEEEEEEECTTSCEEEEEEEEEEEEEEE-TTEEEEEEEEEEECSCCC
T ss_pred cCCeE--EEEEEEEEEEEcCCCCeEEEEeEEEEEEEEE-CCEEEEEEEeecCCCccc
Confidence 23322 23444332 2322 2233567777777 699999999998875543
No 22
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=97.27 E-value=0.0069 Score=44.65 Aligned_cols=113 Identities=11% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCc-cccEEEeEEeeeeeC
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR-DCHAKIRQVDSQATL 109 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~-~~~~~I~svD~Q~~~ 109 (177)
+......+..|+..++. +.+.|..+|.+++.+...| .+..|+++|.+.+...-.. .........+++..+
T Consensus 16 e~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g--------~~~~Gr~ai~a~~~~~~~~~~~~~~~~~~~i~v~G 87 (139)
T 3rob_A 16 ELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPG--------RLPFGKEEFLAACEQNDQRVIIEASATFEEIVIVE 87 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTT--------SCCBCHHHHHHHHHHHHHHEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCC--------CCccCHHHHHHHHHHHHHhcCCCCceEEEEEEEcC
Confidence 56677888888989986 7889999999999987654 3345999999887543210 112222223334433
Q ss_pred CCcEEEE-EEeEeeeC-CCCCceeE--EEEEEEeeCCCcEEEEcceE
Q psy6106 110 GNGVVVQ-VSGELSNG-GQPMRRFT--QTFVLAAQSPKKYYVHNDIF 152 (177)
Q Consensus 110 ~~~ilI~-V~G~v~~~-~~~~r~Fs--qtFvL~~~~~~~y~I~nD~f 152 (177)
+-+++.. ..+..+.. +.++..+. -.++++++.+|+|.|.-|.-
T Consensus 88 D~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 88 PMAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp TEEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred CeEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhh
Confidence 3222211 11122222 32333343 67788886679999998864
No 23
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=97.20 E-value=0.029 Score=39.58 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccc--cCCceEEecCCCCCCcccceecCHHHHHHHHhh-CC--CccccEEEeEEeeeee
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFY--SENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ-LN--FRDCHAKIRQVDSQAT 108 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY--~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~-lp--~~~~~~~I~svD~Q~~ 108 (177)
...-+..++..++. +.+.+..+| .++..+...+ ....|.++|.+.+.. ++ .......+...+.+..
T Consensus 7 I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~--------~~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~ 78 (122)
T 3b7c_A 7 IVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNG--------KFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKML 78 (122)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSS--------CEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCC--------ccccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEc
Confidence 34456677777775 788899999 6777765422 468999999997765 22 1123445555566654
Q ss_pred CCCcEEEEEEeEeeeC--CCCCceeEEEEEEEeeCCCcEEEEcceE
Q psy6106 109 LGNGVVVQVSGELSNG--GQPMRRFTQTFVLAAQSPKKYYVHNDIF 152 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~~--~~~~r~FsqtFvL~~~~~~~y~I~nD~f 152 (177)
.++..+ |.|.+.+. ...+ .-.-|.++++. +++|.|..+..
T Consensus 79 ~~~~a~--v~~~~~~~~~~~~~-~~r~T~v~~k~-~g~W~Iv~~H~ 120 (122)
T 3b7c_A 79 SNYAAM--VVGRWDLKRLKDTP-TGVFTLLVEKI-DDRWVITMDHS 120 (122)
T ss_dssp ETTEEE--EEEEEEEECSSCCC-EEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCCEEE--EEEEEEEEccCCCC-CcEEEEEEEEe-CCCEEEEEEec
Confidence 333322 23444432 1122 23468888887 58999988754
No 24
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=97.18 E-value=0.012 Score=42.35 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC---CccccEEEeEEeeeee
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN---FRDCHAKIRQVDSQAT 108 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp---~~~~~~~I~svD~Q~~ 108 (177)
+-.......|+..+.+ +.+.+..+|+++..+...+ ..+....|.++|.+.+...- ....++.+.....+..
T Consensus 13 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~-----~~g~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~ 87 (143)
T 2ux0_A 13 QEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPE-----ALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVI 87 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGG-----GTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEecc-----CCCcEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEe
Confidence 4456777888888885 7889999999998875432 12256789999999988752 1123445555556655
Q ss_pred CCCcEEEEEEeEee--eC--CCC-CceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 109 LGNGVVVQVSGELS--NG--GQP-MRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 109 ~~~~ilI~V~G~v~--~~--~~~-~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
++..+++.. ..+. .+ +.+ ....-.|+|+++. +|+|.|........
T Consensus 88 gd~aav~~~-~~~~~~~~~~g~~~~~~~r~T~v~~k~-~g~Wkivh~H~S~~ 137 (143)
T 2ux0_A 88 GEDAACIAY-IRLTQYIDGQGRPRTSQSEETRVWHRR-DGKWLNVHYHCSGA 137 (143)
T ss_dssp STTEEEEEE-EEEEEEECTTSCEEEEEEEEEEEEEEE-TTEEEEEEEEEECC
T ss_pred cCcEEEEEE-eEeeeeecCCCCeeeeeEEEEEEEEEE-CCEEEEEEEeeCCC
Confidence 444443322 2222 22 221 2345677888877 59999999887755
No 25
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=97.13 E-value=0.025 Score=40.58 Aligned_cols=114 Identities=10% Similarity=0.081 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhh----CCCccccEEEeEEeee
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ----LNFRDCHAKIRQVDSQ 106 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~----lp~~~~~~~I~svD~Q 106 (177)
+......+.+|+..+++ +.+.+..+|.+++.+...+ .+....|+++|.+.+.. .+ ...++.+..+..+
T Consensus 7 ~~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~------~~~~~~G~~air~~~~~~~~~~~-~~~~~~~~~~~v~ 79 (142)
T 3f7s_A 7 ESEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAI------QALQFKGKSAYTAHWEMCMGMCT-GPMVFELAQLTVH 79 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSS------SSSCEESHHHHHHHHHHHHHTCC-SCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCC------CCccccCHHHHHHHHHHHHHhCC-CceEEEEeeeEEE
Confidence 44567788888888886 6788999999998875432 11345699999887643 23 2355666666555
Q ss_pred eeCCCcEEEEEEeEeeeC--CCCCceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 107 ATLGNGVVVQVSGELSNG--GQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 107 ~~~~~~ilI~V~G~v~~~--~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
..++ ..++.....+... +......--|+++++. +|+|.|.......
T Consensus 80 ~~gd-~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~-~g~W~ivh~H~S~ 127 (142)
T 3f7s_A 80 AAGD-LALAHWLNRCGPGDDESQCGFMRATVGYRRQ-GGQWQVIHEHWSA 127 (142)
T ss_dssp EETT-EEEEEEEEEEEESSCGGGCEEEEEEEEEEEE-TTEEEEEEEEEEC
T ss_pred EcCC-EEEEEEEEEEeeecCCCcceeeEEEEEEEEe-CCEEEEEEEeecc
Confidence 4433 2222222222221 1123345567888877 5899999887765
No 26
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=97.04 E-value=0.045 Score=38.90 Aligned_cols=109 Identities=14% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhh-CCCccccEEEeEEeeeeeCCCc
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ-LNFRDCHAKIRQVDSQATLGNG 112 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~-lp~~~~~~~I~svD~Q~~~~~~ 112 (177)
...-+..|...|++ +.+.|..+|.+++.+.+-+ .+....|.++|.+ +.. ++.......+..+......++.
T Consensus 16 i~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~------~~~~~~G~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 88 (129)
T 2rcd_A 16 VTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYG------AGENLYGIEEIRA-FRLARPSAGLDRALRNTVITTYGHDM 88 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEE------TTEEEESHHHHHH-HHHHSCCTTCCCEEEEEEEEEBTTSE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEEC------CCCccCCHHHHHH-HHHhcCCCCCceEEEEEEEEEecCcE
Confidence 33444556667775 7888999999997654322 1256789999999 554 4422233444444444444432
Q ss_pred EEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 113 VVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 113 ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
.. +...+...+. .....+|.++++. +++|.|.......
T Consensus 89 A~--~~~~~~~~~~-~~~g~~t~v~~r~-~~gWrIv~~H~S~ 126 (129)
T 2rcd_A 89 AV--ASTEFTRTGS-TKIGRQMQTWVKM-PEGWRIVAAHVSL 126 (129)
T ss_dssp EE--EEEEEECSSC-CSCEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred EE--EEEEEEEcCC-CCceeEEEEEEEC-CCcEEEEEEecCC
Confidence 22 3344444332 2345668888887 5899999876653
No 27
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=97.04 E-value=0.013 Score=43.22 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCce--EEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCC-C
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSL--FIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLG-N 111 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~--~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~-~ 111 (177)
..-...||..|.+ +.+.|..+|.++.. +.+.+ +....|+++|.+.+..+=.......+...+.+...+ +
T Consensus 11 ~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~-------g~~l~G~~ai~~~w~~~f~~~~~~~i~~~~v~v~~~gd 83 (144)
T 3gwr_A 11 EAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPL-------AAPLNGRAAVAAGWRSMFGAAGRFRLQVKAVHEIRQAD 83 (144)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTT-------CCCEESHHHHHHHHHHHHHHHCCEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCC-------CCCcccHHHHHHHHHHHHcCCCcEEEEEEEEEEEecCC
Confidence 4456677888886 78899999999843 33332 246789999999887642111134555555444333 3
Q ss_pred cEEEEEEeEeeeC--CCCCceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 112 GVVVQVSGELSNG--GQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 112 ~ilI~V~G~v~~~--~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
..++++...+... +.+...+.-|.|+++. +++|.|....-...
T Consensus 84 ~A~v~~~e~~~~~~~~g~~~~~r~T~V~~r~-~g~WrivhhH~S~~ 128 (144)
T 3gwr_A 84 HVIRIVDEFLTIGDETAPRPAILATNVYRRE-ADGWRMVLHHASPL 128 (144)
T ss_dssp EEEEEEEEEEEETTCSSCCCCEEEEEEEEEC-SSSEEEEEEEEEEC
T ss_pred EEEEEEEEEEEecCCCCceeeEEEEEEEEEE-CCEEEEEEEecCCC
Confidence 4555555666653 2222457778888877 58899999888765
No 28
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=96.97 E-value=0.059 Score=39.05 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHh-cChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCC
Q psy6106 32 HRVGREFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLG 110 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~-~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~ 110 (177)
.+|... +..|+..|+ .+.+.|..+|.+++.+++-+ .+....|.++|..+.+.++....++.+.....+...+
T Consensus 11 ~eI~~~-~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~------~g~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~ 83 (129)
T 2owp_A 11 AQVQAA-FVEYERALVENDIEAMNALFWHTPETVRYG------IAEVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGT 83 (129)
T ss_dssp HHHHHH-HHHHHHHHHHTCHHHHHHTBCCSTTCEEEC------SSCEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETT
T ss_pred HHHHHH-HHHHHHHHHhCCHHHHHhhccCCCcEEEeC------CCCccCCHHHHHHHHHhcCCCCCceeecccEEEEecC
Confidence 344444 455566666 58899999999998644333 1357789999999777775322344554544555443
Q ss_pred CcEEEEEEeEeeeCCCCCceeEEEEEEEeeCC--CcEEEEcceEEee
Q psy6106 111 NGVVVQVSGELSNGGQPMRRFTQTFVLAAQSP--KKYYVHNDIFRYQ 155 (177)
Q Consensus 111 ~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~--~~y~I~nD~fr~~ 155 (177)
+...+ + ..+...+.+ ..+-++.+..+. + ++|.|.......+
T Consensus 84 d~A~~-~-~~~~~~~~~-~~gr~t~vw~r~-~~~~gWrIv~~H~S~~ 126 (129)
T 2owp_A 84 DFATV-S-TEFTSDATP-LLGRQMQTWARL-SPADGWKIVAAHVSLI 126 (129)
T ss_dssp TEEEE-E-EEEEETTEE-EEEEEEEEEEEC-STTTCEEEEEEEEEEE
T ss_pred CEEEE-E-EEEEECCCC-cceEEEEEEEEC-CCCCCEEEEEeeecCC
Confidence 33222 2 234444433 234455555555 5 7999998777655
No 29
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=96.63 E-value=0.071 Score=38.28 Aligned_cols=107 Identities=11% Similarity=0.146 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccc-ee-cCHHHHHHHHhh-CCCccccEEEeEEeeeeeC
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETK-QV-VGQEQIHEHIQQ-LNFRDCHAKIRQVDSQATL 109 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~-~~-~G~~~I~~~l~~-lp~~~~~~~I~svD~Q~~~ 109 (177)
....-+..|+..++. +.+.|...|++++.+.... .+. .. ...++..+.+.+ -|.....+.|.+++...
T Consensus 13 aI~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~------~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~g-- 84 (125)
T 3duk_A 13 GITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV------GDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIVG-- 84 (125)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE------TTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEET--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc------CCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEEC--
Confidence 345667889989986 6788999999999985321 112 11 134555555543 34435677887776643
Q ss_pred CCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 110 GNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 110 ~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
+.-.+.|. +. .-+...|+..|.|.+. +|+|.|.|=+|+.
T Consensus 85 -d~A~a~v~--~~--~~~~~~f~D~l~L~k~-dg~WkIv~K~~~~ 123 (125)
T 3duk_A 85 -TVAHARVE--AE--NWTNFKFSDLFLLLKL-DGKWTIVNKVFHL 123 (125)
T ss_dssp -TEEEEEEE--EE--CSSSCCEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred -CEEEEEEE--EE--EcCCCeEEEEEEEEEe-CCEEEEEEEEEEe
Confidence 32222221 11 1123689999999998 5999999999875
No 30
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=96.54 E-value=0.066 Score=39.36 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhc--ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC--CCccccEEEeEEeeee
Q psy6106 32 HRVGREFVRQYYTLLNQ--APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVDSQA 107 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~--~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l--p~~~~~~~I~svD~Q~ 107 (177)
......++.+|+..+|. +.+.+..+|.+++.+...+. ......|+++|.+.+... ++..+.|.+..+....
T Consensus 27 ~~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~-----g~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~ 101 (163)
T 3b8l_A 27 RLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGI-----GLTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTG 101 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGG-----TCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCC-----CCCCccCHHHHHHHHHHhhccCCceEEEecCEEEEE
Confidence 35677899999999997 56789999999999875321 112578999999988763 2234567776665553
Q ss_pred eCCCcEEEEEEeEe-eeCC-CCCc--eeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 108 TLGNGVVVQVSGEL-SNGG-QPMR--RFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 108 ~~~~~ilI~V~G~v-~~~~-~~~r--~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
..++...+.....+ ...+ ..+. .-.-+.+|++. +++|.|.+-.+.+.
T Consensus 102 ~~gd~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~-dg~WrI~~r~~~~~ 152 (163)
T 3b8l_A 102 YEGDTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRT-EKGWKATRYTMDFL 152 (163)
T ss_dssp ECSSEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEE-TTEEEEEEEEEEES
T ss_pred eCCCEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEe-CCEEEEEEEEEEEE
Confidence 33343322222221 1122 1111 12345566666 58999999888664
No 31
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=96.46 E-value=0.035 Score=40.39 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHH-HHhhC-C-CccccEEEeEEeeeee
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE-HIQQL-N-FRDCHAKIRQVDSQAT 108 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~-~l~~l-p-~~~~~~~I~svD~Q~~ 108 (177)
+.....+..|+..+.+ +.+.|..+|.+++.+...+ ....|+++|.+ .+... . .....+.+..+..+..
T Consensus 30 ~~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~--------g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 101 (148)
T 3bb9_A 30 SAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGG--------KVERSLTEYANHHMLADMAYLKGLTITPKEHQITIT 101 (148)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETT--------EEECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCC--------CccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEc
Confidence 3566778888888885 7889999999999875433 23779999988 55432 1 1124455555544443
Q ss_pred CCCcEEEEEEeEeee--CCCC-CceeEEEEEE-EeeCCCcEEEEcce
Q psy6106 109 LGNGVVVQVSGELSN--GGQP-MRRFTQTFVL-AAQSPKKYYVHNDI 151 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~--~~~~-~r~FsqtFvL-~~~~~~~y~I~nD~ 151 (177)
+ +..++.....+.. ++.+ ...+.-|+++ ++. +|+|.|....
T Consensus 102 g-d~A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~-~g~WkIvh~H 146 (148)
T 3bb9_A 102 G-DIAISTSISHAQGEYKGKSIDSMTMETLVLIKQA-DGRWKITHVH 146 (148)
T ss_dssp T-TEEEEEEEEEEEECCC--CEEEEEEEEEEEEECT-TSCEEEEEEE
T ss_pred C-CEEEEEEEEEEeeeeCCcccccceEEEEEEeEEc-CCcEEEEEEE
Confidence 3 3233322222222 2222 2346668888 665 6899998753
No 32
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=96.46 E-value=0.041 Score=39.88 Aligned_cols=114 Identities=12% Similarity=0.151 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCccccee-cCHHHHHHHHhhCC-----CccccEEEeEEee
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQV-VGQEQIHEHIQQLN-----FRDCHAKIRQVDS 105 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~-~G~~~I~~~l~~lp-----~~~~~~~I~svD~ 105 (177)
.....++..|...+|. +.+.+..+|.+++.+...+ ... .|+++|.+.+...+ ...+.|.+..+..
T Consensus 19 ~~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~--------g~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i 90 (155)
T 2rfr_A 19 EEIRELIARYGPLADSGDAEALSELWVEDGEYAVVG--------FATAKGRAAIAALIDGQTHRALMADGCAHFLGPATV 90 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETT--------SCCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEE
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCC--------CccccCHHHHHHHHHhccccccCCCceeEeCCCeEE
Confidence 4566889999999997 6678999999999987643 234 89999999888652 1235677665444
Q ss_pred eeeCCCcEEEEEEeEee--eCCCCCcee---EEEEEEEeeCCCcEEEEcceEEeecc
Q psy6106 106 QATLGNGVVVQVSGELS--NGGQPMRRF---TQTFVLAAQSPKKYYVHNDIFRYQDF 157 (177)
Q Consensus 106 Q~~~~~~ilI~V~G~v~--~~~~~~r~F---sqtFvL~~~~~~~y~I~nD~fr~~d~ 157 (177)
...+ +...+...-.+. ..+. ...+ ...+.|++. +++|.|.+=.++++..
T Consensus 91 ~~~g-d~A~~~~~~~~~~~~~~~-~~~~~~g~y~d~~~r~-~g~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 91 TVEG-DTATARCHSVVFRCVSGT-FGSHRVSANRWTFRRT-PAGWRAVRRENALLDG 144 (155)
T ss_dssp EEET-TEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEEE-TTEEEEEEEEEEESSS
T ss_pred EEeC-CEEEEEEEEEEEEEcCCC-ceEEEeeeeEEEEEEC-CCEEEEEEEEEEecCC
Confidence 3333 322222222211 1221 1111 133567776 5899999977776543
No 33
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=96.30 E-value=0.12 Score=38.13 Aligned_cols=113 Identities=9% Similarity=0.015 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC-ccccEEEeEEeeeeeCC
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF-RDCHAKIRQVDSQATLG 110 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~-~~~~~~I~svD~Q~~~~ 110 (177)
.....++.+|+..++. +.+.+..+|.+++.+.+.+ ....|+++|.+.+..... ..+.|.+..+.....+
T Consensus 14 ~~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g--------~~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~g- 84 (170)
T 2chc_A 14 LRIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDG--------WVIRGRPALREYADAHARVVRGRHLTTDLLYEVDG- 84 (170)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETT--------EEEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEET-
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCC--------CCcCCHHHHHHHHHHhhcccceEEecCCeEEEEeC-
Confidence 4566889999999996 6678999999999987643 467899999998876421 2466777665544333
Q ss_pred CcEEEEEEeEe--eeCCCCC--ceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 111 NGVVVQVSGEL--SNGGQPM--RRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 111 ~~ilI~V~G~v--~~~~~~~--r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
+...+.....+ ...+... ..-.-+.++++. +++|.|..-.+.+.
T Consensus 85 d~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~-dg~Wri~~r~~~~~ 132 (170)
T 2chc_A 85 DVATGRSASVVTLATAAGYKILGSGEYQDRLIKQ-DGQWRIAYRRLRND 132 (170)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEE-CCEEEEEEEEEEEe
Confidence 32222221111 1111111 111234455555 58999999888765
No 34
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=96.22 E-value=0.096 Score=38.41 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC----ccccEEEeEEe-eeeeC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF----RDCHAKIRQVD-SQATL 109 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~----~~~~~~I~svD-~Q~~~ 109 (177)
...+.+|+..|+. +.+.|..+|.++..+++.+. .....|.++|.+.+..-.+ ....+.+..+. .+..+
T Consensus 13 ~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~------~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~g 86 (145)
T 3soy_A 13 TEGINRYLYSIDKADPTLGKQLFYVSPETSFIHP------RGHERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYG 86 (145)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEET------TEEEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEET
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcC------CCcccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcC
Confidence 4445666666664 78899999987754443221 1346899999888754221 11233343444 34433
Q ss_pred CCcEEE---EEEeEeeeCCCC-CceeEEEEEEEeeCCCcEEEEcceEE
Q psy6106 110 GNGVVV---QVSGELSNGGQP-MRRFTQTFVLAAQSPKKYYVHNDIFR 153 (177)
Q Consensus 110 ~~~ilI---~V~G~v~~~~~~-~r~FsqtFvL~~~~~~~y~I~nD~fr 153 (177)
+..+.+ .+.|.+..++.+ ...+-.|.++++..+++|.|...-..
T Consensus 87 d~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H~S 134 (145)
T 3soy_A 87 NAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHYS 134 (145)
T ss_dssp TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEecC
Confidence 322221 233444334443 22355677777754589999987764
No 35
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=96.08 E-value=0.12 Score=36.81 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccc-eecCHHHHHHHHhhCCCc---cccEEEeEEeeeee
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETK-QVVGQEQIHEHIQQLNFR---DCHAKIRQVDSQAT 108 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~-~~~G~~~I~~~l~~lp~~---~~~~~I~svD~Q~~ 108 (177)
....-+..|+.-+++ +.+.|..-|++++.+.... .+. .....++..+ +..-|.. .....|.++|...
T Consensus 10 aI~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~------~g~~~~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g- 81 (120)
T 3fka_A 10 ALTALVETYVMAMTRGDRPALERIFFGKASEVGHY------EGELLWNSRDAFIA-MCEDAADAETDPFWAISSVSVQG- 81 (120)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE------TTEEEEEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET-
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec------CCcEEEcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC-
Confidence 345558899999996 6788999999999885422 111 1223445555 5433422 1234566666532
Q ss_pred CCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEe
Q psy6106 109 LGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
+.-.+.|. +.. +...|...|.|.+. +|+|.|.|=+|++
T Consensus 82 --d~A~a~v~--~~~---~~~~f~D~~~L~k~-dg~WkIv~K~~~~ 119 (120)
T 3fka_A 82 --DIAMLHVE--NDW---AGMRFDDFLTVLLH-EGSWRIVSKVYRI 119 (120)
T ss_dssp --TEEEEEEE--EEE---TTEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred --CEEEEEEE--EEc---CCCceEEEEEEEEe-CCEEEEEEEEEEc
Confidence 33333333 222 34789999999998 5999999999976
No 36
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=96.00 E-value=0.075 Score=41.37 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCC
Q psy6106 31 LHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLG 110 (177)
Q Consensus 31 ~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~ 110 (177)
+.+--..=|++|+..+..++..+..||.+++.+.+...+ ........|+++|.+.+..++..--...+..+....+.+
T Consensus 39 ~~~~nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~--~G~P~r~~GReai~~~~~~~~~~~~d~~~~~~~v~~taD 116 (185)
T 3jum_A 39 ARQHNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTD--SGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQD 116 (185)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCT--TSSCEEEESHHHHHHHHHHHHHHSTTCEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCC--CCCCccccCHHHHHHHHHHHHhhCCCCeeeEEEEEEecC
Confidence 334556667788888888899999999999999874211 112246899999999987765111123555666666544
Q ss_pred C-cEEEEEEeE--eeeCCCCCceeEEEEE
Q psy6106 111 N-GVVVQVSGE--LSNGGQPMRRFTQTFV 136 (177)
Q Consensus 111 ~-~ilI~V~G~--v~~~~~~~r~FsqtFv 136 (177)
+ .+++-..|. +...|.|...|.+.|+
T Consensus 117 pd~VvvE~~~~Gtv~~TGkp~~~Y~~~yi 145 (185)
T 3jum_A 117 PNWFWVECRGEGAIVFPGYPRGQYRNHFL 145 (185)
T ss_dssp TTEEEEEEEEEEEECCTTSCCEEEEEEEE
T ss_pred CCEEEEEEEEEEEEcCCCCccceEEEeEE
Confidence 4 455555554 4344544233555443
No 37
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=95.93 E-value=0.13 Score=39.35 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCce-----------------EEecCCCCCCcccceecCHHHHHHHHhhCC-Cc
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSL-----------------FIHGGLDAPNRETKQVVGQEQIHEHIQQLN-FR 94 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~-----------------~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp-~~ 94 (177)
........||..+.+ +.+.|..+|.+++. +.+.| +....|+++|.+.+...= ..
T Consensus 13 ~I~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg-------~~~l~G~~~I~~~~~~~f~~~ 85 (170)
T 3cnx_A 13 QVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPG-------WPVLSGRGEVLRSYALIMANT 85 (170)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTT-------CCEEEHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCC-------CccccCHHHHHHHHHHHHccC
Confidence 345677888888886 77889999999853 33332 257899999998876541 11
Q ss_pred -cccEEEeEEeeeeeCCCcEEEEEEeEeeeCC---------CCC--ceeEEEEEEEeeCCCcEEEEcceEEeecc
Q psy6106 95 -DCHAKIRQVDSQATLGNGVVVQVSGELSNGG---------QPM--RRFTQTFVLAAQSPKKYYVHNDIFRYQDF 157 (177)
Q Consensus 95 -~~~~~I~svD~Q~~~~~~ilI~V~G~v~~~~---------~~~--r~FsqtFvL~~~~~~~y~I~nD~fr~~d~ 157 (177)
..++.+..+.....+ +..++++...+...+ .+. ..+.-|.|+++. +++|.|......-+..
T Consensus 86 ~~~~~~~~dv~v~~~g-D~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~-~ggWriv~hH~Sp~~~ 158 (170)
T 3cnx_A 86 EYIQFFLTDVHVSVTG-DTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRT-PDGWKLWSHHASPVLA 158 (170)
T ss_dssp SEEEEEEEEEEEEEET-TEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECC-TTCCEEEEEEEEECCC
T ss_pred CeeEEEEEEEEEEEeC-CEEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEE-CCEEEEEEEecCCCCC
Confidence 134444444443333 334455555555311 121 125578888877 4889999988876643
No 38
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=95.79 E-value=0.015 Score=42.26 Aligned_cols=99 Identities=15% Similarity=0.025 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCC-CCcccceecCHHHHHHHHhhCCC--ccccEEEeEEeeeeeCCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDA-PNRETKQVVGQEQIHEHIQQLNF--RDCHAKIRQVDSQATLGN 111 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~-~~~~~~~~~G~~~I~~~l~~lp~--~~~~~~I~svD~Q~~~~~ 111 (177)
..|++.||..+++ +.+.|..+|+++..+.-.|... -.+ .....|+++|.+.+..+.. ...++++..+- ..++
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~-~g~~~G~~av~~~~~~~~~~~~~~~~~~~~~~---~~gd 82 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPF-FGARQGKAAVLEVCRQIADSVRIYRYHRESVM---LGID 82 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTT-CEEEESHHHHHHHHHHHHHHEEEEEEEEEEEE---ECSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCC-CccccCHHHHHHHHHHHHHhcCcceEEEEEEE---EcCC
Confidence 5677777778886 6788999999999876544210 001 1357899999999998752 12234443321 1233
Q ss_pred cEEEEEE--eEeeeCCCC-CceeEEEEEEE
Q psy6106 112 GVVVQVS--GELSNGGQP-MRRFTQTFVLA 138 (177)
Q Consensus 112 ~ilI~V~--G~v~~~~~~-~r~FsqtFvL~ 138 (177)
.+.+.+. |.....|++ ...+...|.+.
T Consensus 83 ~v~v~~~~~~~~~~tG~~~~~~~~~~~~v~ 112 (143)
T 3dm8_A 83 SAASMVRYSLTAAGTNRPISVRMALFTQFQ 112 (143)
T ss_dssp EEEEEEEEEEEETTTCCEEEEEEEEEEEEE
T ss_pred eEEEEEEEEEEEeCCCCEEEEEEEEEEEEE
Confidence 4433333 332223432 23566666664
No 39
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=95.61 E-value=0.15 Score=36.62 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhc--ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC--ccccEEEeEEeeeeeCC
Q psy6106 35 GREFVRQYYTLLNQ--APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF--RDCHAKIRQVDSQATLG 110 (177)
Q Consensus 35 a~~Fv~~YY~~l~~--~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~--~~~~~~I~svD~Q~~~~ 110 (177)
+..++..++..... +-+.|...|+++..|...+ ....|++++.+.+...-- .+-++.|..+......+
T Consensus 12 ~~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~--------G~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~ 83 (128)
T 1tp6_A 12 AHVAIRDWLAGDSRADALDALMARFAEDFSMVTPH--------GVVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGV 83 (128)
T ss_dssp HHHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTT--------SCEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEET
T ss_pred HHHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCC--------CeECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecC
Confidence 45566677765555 4567889999999997422 357899999999887531 13555555555544456
Q ss_pred CcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCC--cEEEEcce
Q psy6106 111 NGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPK--KYYVHNDI 151 (177)
Q Consensus 111 ~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~--~y~I~nD~ 151 (177)
++.++.-.+.=..++......+ |.+|.+..+| .|.++-+.
T Consensus 84 d~~vv~y~~~~~~~~~~~~rrs-T~v~~~~~~g~~~W~~lHET 125 (128)
T 1tp6_A 84 DGATLAYREIQSDAAGRSERLS-TVVLHRDDEGRLYWRHLQET 125 (128)
T ss_dssp TEEEEEEEEEEEETTEEEEEEE-EEEEEECTTCCEEEEEEEEE
T ss_pred CEEEEEEEEEeccCCceeEEEE-EEEEEeCCCCCEEEEEEEEE
Confidence 6666665543334443345666 8888666456 48776554
No 40
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=95.48 E-value=0.29 Score=36.70 Aligned_cols=115 Identities=9% Similarity=-0.023 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHH-hhC--CCccccEEEeEEeeeee
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHI-QQL--NFRDCHAKIRQVDSQAT 108 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l-~~l--p~~~~~~~I~svD~Q~~ 108 (177)
.....|+.+|...+|. +.+.+..+|.+++.+.+.+ .....|+++|.+.+ ... ++..++|.+..+.....
T Consensus 31 ~~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~-------~g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~ 103 (176)
T 3a76_A 31 AAIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEG-------IGTYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFV 103 (176)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT-------TEEEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCC-------CccccCHHHHHHHHHHhhhcccCceEEecCCeEEEEc
Confidence 4567899999999997 5678999999999986633 12578999999988 542 33357788876555443
Q ss_pred CCCcEEEEEEeEee--eCCCC-Ccee--EEEEEEEeeCCCcEEEEcceEEee
Q psy6106 109 LGNGVVVQVSGELS--NGGQP-MRRF--TQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 109 ~~~~ilI~V~G~v~--~~~~~-~r~F--sqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
.++...+.+...+. ..... ...+ .-+..|++. +++|.|..-.+.+.
T Consensus 104 g~d~A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~-dg~WrI~~r~~~~~ 154 (176)
T 3a76_A 104 SADKVNGIGDVLLLGNLVEGNQSILIAAVFTDEYERR-DGVWKFSKRNACTN 154 (176)
T ss_dssp SSSEEEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEEEEEecCCCceEEEEEEEEEEEEEE-CCEEEEEEEEEEEE
Confidence 32333332111211 12111 1111 123445555 58999999877664
No 41
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=95.38 E-value=0.021 Score=41.86 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhc------ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeEEeeeee
Q psy6106 37 EFVRQYYTLLNQ------APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVDSQAT 108 (177)
Q Consensus 37 ~Fv~~YY~~l~~------~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~svD~Q~~ 108 (177)
.-|++||..++. +.+.|..||.+++.+..++ ....|+++|.+++..+- +...+|.+........
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~--------~~~~G~~ai~~F~~~~~~a~~~~~~~~~~~v~~~~ 77 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNG--------QEQHGIDAWKQFVRMVFTANQDIKHMYAGWVPSET 77 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETT--------EEEESHHHHHHHHHHHHHHEEEEEEEECCCEECSS
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCC--------CCcCChHHHHHHHHHHHhhCcCceEEEEEEEEecC
Confidence 346778888873 2567889999999993222 46789999999998762 2245555543321221
Q ss_pred CCC-cEEEEEEeEeeeCCCCCceeEEEEEEEeeCCC---cEEEEcceEEeec
Q psy6106 109 LGN-GVVVQVSGELSNGGQPMRRFTQTFVLAAQSPK---KYYVHNDIFRYQD 156 (177)
Q Consensus 109 ~~~-~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~---~y~I~nD~fr~~d 156 (177)
++. .+-..++|+..- |. ...|.-+-+..=..+| ...+..|.+-++.
T Consensus 78 gd~~~~~w~~~g~~~~-G~-~~~~~g~dv~~fd~dGkI~~~~~~~d~~~~~~ 127 (131)
T 3er7_A 78 GDTMETRWAVCGKSAD-GS-VFTQDGTDIARLNADGKIVYLANVPDDTAMFN 127 (131)
T ss_dssp TTCEEEEEEEEEEETT-SC-EEEEEEEEEEEECTTSCEEEEEEEECCC----
T ss_pred CCEEEEEEEEEEEECC-CC-EEEEeeeEEEEEcCCCcEEEEEEccChHHHHH
Confidence 111 244556665322 22 2333333333222123 3556666655543
No 42
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=95.33 E-value=0.14 Score=42.97 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCCCc
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNG 112 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~ 112 (177)
|.+.=+.+|+..|+. +-+.+..||.+++.+-- .++ .++.|+++|..++.+--. ..+.....--+.|..+++
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~Lep------Pf~-~PIvGreAI~~y~~~eaq-~~~l~P~~g~~ep~e~g~ 264 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQP------PFQ-RPIVGKENVLRFFREECQ-NLKLIPERGVTEPAEDGF 264 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC------TTS-CCEESHHHHHHHHHHHCT-TCEEEEEEEEEEECGGGC
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeCC------CCC-CCccCHHHHHHHHHHHhc-cCEEeeccCccccccCCC
Confidence 445667788888886 67889999999999852 234 789999999999987532 355666666677877788
Q ss_pred EEEEEEeEeeeCC--C-CCceeEEEEEEEeeCCCcEEEEcce
Q psy6106 113 VVVQVSGELSNGG--Q-PMRRFTQTFVLAAQSPKKYYVHNDI 151 (177)
Q Consensus 113 ilI~V~G~v~~~~--~-~~r~FsqtFvL~~~~~~~y~I~nD~ 151 (177)
.-+.|+|.++..= . ....-.-.|.|-+.+ +-++|.=|.
T Consensus 265 ~qi~vtGkVqTpwfGv~v~mnVaW~F~lN~~g-kI~~v~i~L 305 (323)
T 3mg1_A 265 TQIKVTGKVQTPWFGGNVGMNIAWRFLLNPEG-KIFFVAIDL 305 (323)
T ss_dssp EEEEEEEEEECTTTGGGCCEEEEEEEEECTTS-CEEEEEEEE
T ss_pred ceEEEEEEEEcccCCccccccceeEEEECCCC-cEEEEEehh
Confidence 9999999998742 1 234567788887663 446665443
No 43
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=95.27 E-value=0.46 Score=34.06 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=47.6
Q ss_pred CchhHHHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 27 APAHLHRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 27 ~~~~~~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
+.++.-.++.+.++.|+..+.. +.+.|..++.++..+.+.|.+ -.....|+++|.+.+..+.
T Consensus 6 ~~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~~----~~g~~~G~~~v~~~~~~~~ 68 (134)
T 3dmc_A 6 YSDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMGE----FHGLNVGKERAKEFFTYVS 68 (134)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSGG----GBEEEESHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCCC----CCccchhHHHHHHHHHHHH
Confidence 3455667788888888888875 778899999999999876621 1136789999999888765
No 44
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=95.20 E-value=0.44 Score=32.49 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=62.5
Q ss_pred HHHHHHHHHh-cChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCCCcEEEE
Q psy6106 38 FVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQ 116 (177)
Q Consensus 38 Fv~~YY~~l~-~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI~ 116 (177)
..+.|+..+. .+.+.|..+++++..+.+.+ ....|++++.+.+.+-+.......+..+.++...+..+++.
T Consensus 11 l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--------G~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~ 82 (123)
T 2r4i_A 11 CEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--------GETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSV 82 (123)
T ss_dssp HHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--------SCEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--------CCCccHHHHHHHHhcCCeEEEEEeecccEEEEECCEEEEEE
Confidence 3445555554 58899999999987666532 24568888777776543222345566677777665444443
Q ss_pred EEeEee--eCCCC-CceeEEEEEEEeeCCCcEEEEcceEE
Q psy6106 117 VSGELS--NGGQP-MRRFTQTFVLAAQSPKKYYVHNDIFR 153 (177)
Q Consensus 117 V~G~v~--~~~~~-~r~FsqtFvL~~~~~~~y~I~nD~fr 153 (177)
.-.+. ..+.+ ...+-.|.+..+. +++|.|....-.
T Consensus 83 -~~~~~~~~~g~~~~~~~r~t~vw~r~-~g~W~iv~~h~S 120 (123)
T 2r4i_A 83 -NIEIKGEYMEHTLDNTFRYLRVWKLF-DGNWKVIAGSCT 120 (123)
T ss_dssp -EEEEEEEETTEEEEEEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred -EEEEEEEECCcceeEEEEEEEEEEEe-CCeEEEEEEEEE
Confidence 22221 23332 2233445566666 589999876543
No 45
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=95.16 E-value=0.15 Score=37.33 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 37 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 37 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
+.|+.|+..+++ +.+.|..+|++++.+.-.+ .+....|+++|.+.+..+.
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~------~g~~~~Greai~~~~~~~~ 79 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHA------IGATMTGREQISGWKARTD 79 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETT------TTEEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccC------CCceEecchhhhhhhhhhh
Confidence 467888888886 7899999999999986322 2357899999999988764
No 46
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=94.96 E-value=0.62 Score=32.87 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC--CCccccEEEeEEeeeee
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVDSQAT 108 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l--p~~~~~~~I~svD~Q~~ 108 (177)
......-+.+|+..++. +.+.|...|++++.+...... .. ......++..+.+... |.....+.|.+++..
T Consensus 11 ~~aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~-- 84 (128)
T 3blz_A 11 YHAIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVD---NK-LTGGPIQGLFDVIDNVFHPSPEAKAAIARIDIV-- 84 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTT---SC-EEEEETHHHHHHHHHTCCCCTTCEEEEEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCC---Cc-EEecCHHHHHHHHHhcCCCCccccCeEEEEEEE--
Confidence 34566778899999996 678899999999998642100 00 1122345555555443 322345555544433
Q ss_pred CCCcEEEEEEeEeeeCCCCCceeEEEEEEEeeCCCcEEEEcceEEeec
Q psy6106 109 LGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 109 ~~~~ilI~V~G~v~~~~~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~d 156 (177)
+ +.-.+.+... ... ...|...|.|.+. +|+|.|.+-.++...
T Consensus 85 g-d~A~a~~~~~-~~~---~~~~~d~~~l~k~-dg~WkI~~~~~~~~~ 126 (128)
T 3blz_A 85 G-TAASARIDTD-DIS---GFRFTDFFNLLKV-EGKWTVVSKIYHTHP 126 (128)
T ss_dssp T-TEEEEEEEEE-EET---TEEEEEEEEEEEE-TTEEEEEEEEEEECC
T ss_pred C-CEEEEEEEEE-EcC---CCceEEeEEEEEE-CCEEEEEEEEEEecc
Confidence 2 3333333321 222 3568889999987 589999999987654
No 47
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=94.73 E-value=0.77 Score=32.87 Aligned_cols=113 Identities=9% Similarity=-0.017 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC---CCccccEEEeEEeeee
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL---NFRDCHAKIRQVDSQA 107 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l---p~~~~~~~I~svD~Q~ 107 (177)
......|+.+|...+|. +.+.+..+|.+++.+.... ....|+++|.+.+... ....++|.|..+-...
T Consensus 9 ~~~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--------g~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~ 80 (144)
T 2rgq_A 9 KLEIMELAARFEMSLDKEDVENYLATFASDGALQGFW--------GIAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQG 80 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--------EEEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--------CCCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEE
Confidence 45567899999999997 5678999999999986531 2348999999888643 1124778887766543
Q ss_pred eCCCcEEEEEEeEeeeCCCCCcee--EEEEEEEeeCCCcEEEEcceEEe
Q psy6106 108 TLGNGVVVQVSGELSNGGQPMRRF--TQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 108 ~~~~~ilI~V~G~v~~~~~~~r~F--sqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
.+ +...+.....+.........+ .-...|++. +++|.|..=.+.+
T Consensus 81 ~~-d~a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~-dg~Wri~~r~~~~ 127 (144)
T 2rgq_A 81 NY-DEATMESYLTVVNREDLNRAGSAFVKDQVRKI-NGKWYLILRQIEV 127 (144)
T ss_dssp CS-SEEEEEEEEEEEESSSSCEEEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred eC-CEEEEEEEEEEEEecCCeEEEEEEEEEEEEEE-CCEEEEEEEEEEe
Confidence 32 222222111222111111111 123355555 5889999977744
No 48
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=94.69 E-value=0.19 Score=38.30 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhcChhhHhccccCCce---EEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeee
Q psy6106 31 LHRVGREFVRQYYTLLNQAPAHLHRFYSENSL---FIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQA 107 (177)
Q Consensus 31 ~~~va~~Fv~~YY~~l~~~r~~L~~fY~~~S~---~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~ 107 (177)
..+--+.-|++|+..+..+++.+..||.+++. +... ...+....|+++|.+++..++..-....+..+..+.
T Consensus 17 ~r~~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e~~-----~G~P~~~~Gre~l~~~~~~~~~~~~~~~~~~~~i~~ 91 (163)
T 3ff0_A 17 LRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTD-----TGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFE 91 (163)
T ss_dssp HHHHHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESSCS-----SSSCEEEESHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeEEC-----CCCCcceecHHHHHHHHHHHHhhCCCceeeeEEEEE
Confidence 44555677778887777888999999999998 6411 122357899999999988764111124556666777
Q ss_pred eCCC-cEEEEEEeEee
Q psy6106 108 TLGN-GVVVQVSGELS 122 (177)
Q Consensus 108 ~~~~-~ilI~V~G~v~ 122 (177)
+.+. .+++-..|.-+
T Consensus 92 t~Dpd~vvvE~~~~g~ 107 (163)
T 3ff0_A 92 TDDPNHFWVECDGHGK 107 (163)
T ss_dssp BSSTTEEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEE
Confidence 6554 45555555433
No 49
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=94.68 E-value=0.01 Score=43.92 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCchhHH
Q psy6106 8 SPQCVGREFVRQYYTLLNQAPAHLH 32 (177)
Q Consensus 8 ~~~~~~~~fv~~yy~~~~~~~~~~~ 32 (177)
.+..||.+||+|||+++|+.++.+.
T Consensus 12 ~a~~v~~~Fv~~YY~~~d~~r~~L~ 36 (140)
T 1jkg_A 12 QACRAAEEFVNVYYTTMDKRRRLLS 36 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3567999999999999999776544
No 50
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=94.59 E-value=0.13 Score=36.84 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~ 93 (177)
.+.-|.+||..+.+ +.+.|..||++++.+.++. .+....|+++|.+++...|.
T Consensus 7 ~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~------~~~~~~Gr~~~~~~~~~~~~ 60 (128)
T 3en8_A 7 IREALNAHWQASAAGDFDAEHDIYDDDAICDYPQ------SGERILGRMNLQALRSHHPG 60 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETT------TTEEEESHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCC------CCCEEECHHHHHHHHHHCCC
Confidence 34566777777775 7888999999999997743 12468999999999998884
No 51
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=94.25 E-value=0.2 Score=37.17 Aligned_cols=80 Identities=16% Similarity=0.315 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCC--ccccEEEeEEeeeeeCC
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF--RDCHAKIRQVDSQATLG 110 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~--~~~~~~I~svD~Q~~~~ 110 (177)
...+|...|-..|.. +.+.|.+||+.+|.+.=.. .+....|+..|.++|++-.- .+..+.|++. .+
T Consensus 21 ~EqqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~t------a~~~YtG~r~Ii~Fl~RaH~gvLey~fnieHm-----fn 89 (154)
T 3gzb_A 21 QEQQLAVKYMDALTEHDYKTLITFYNRDSIFFDKT------ANRKYTGGRFIIDFLERAHQGVLEYDFNIEHM-----YN 89 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETT------TTEEEESHHHHHHHHHHHTTTCCCCEEEEEEE-----EE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHhCccceeeeec------cCcceeCcHHHHHHHHHHhhhheeeccChhhh-----cc
Confidence 345777788888887 8999999999999997422 34788999999999987541 1233444332 22
Q ss_pred CcEEEEEEeEeeeC
Q psy6106 111 NGVVVQVSGELSNG 124 (177)
Q Consensus 111 ~~ilI~V~G~v~~~ 124 (177)
.|-||+..|...++
T Consensus 90 sGsLVVmiGnY~~k 103 (154)
T 3gzb_A 90 AGSLVVMIGNYHFK 103 (154)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred CCcEEEEEcceeec
Confidence 34455666775554
No 52
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=94.21 E-value=0.014 Score=44.25 Aligned_cols=23 Identities=13% Similarity=0.417 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhH
Q psy6106 9 PQCVGREFVRQYYTLLNQAPAHL 31 (177)
Q Consensus 9 ~~~~~~~fv~~yy~~~~~~~~~~ 31 (177)
+..||++||+|||+++|+.++.+
T Consensus 33 a~~vg~~FV~qYY~~~d~~R~~L 55 (154)
T 3nv0_B 33 LCNESKKFMDVYYDVMDRKREKI 55 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCHHHH
Confidence 44699999999999999766543
No 53
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=94.21 E-value=0.1 Score=36.20 Aligned_cols=90 Identities=8% Similarity=0.074 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCc--cccEEEeEEeeeeeCCCcE
Q psy6106 37 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR--DCHAKIRQVDSQATLGNGV 113 (177)
Q Consensus 37 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~--~~~~~I~svD~Q~~~~~~i 113 (177)
..|+.||..+++ +.+.+..+.+++......| .....|++++.+.+..+... ..+++|..+=+ .++
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g-------~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~---~Gd-- 71 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIG-------NQVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQ---NEN-- 71 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETT-------TEEEESHHHHHHHHHHHHHHHHTSEEEEEEEEE---CSS--
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcC-------CccEecHHHHHHHHHHHHhhcCCcEEEEEEEEE---eCC--
Confidence 357778888886 6678999999997754433 14678999999998877521 23455544211 222
Q ss_pred EEEEEeEeee---CCCC-CceeEEEEEEE
Q psy6106 114 VVQVSGELSN---GGQP-MRRFTQTFVLA 138 (177)
Q Consensus 114 lI~V~G~v~~---~~~~-~r~FsqtFvL~ 138 (177)
.+.|.|.+.. ++.+ ...|...|-+.
T Consensus 72 ~Vvv~~~~~~~~~~g~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 72 QIVIEGKCRYFDAEGKEAFVSYCDIYRFE 100 (112)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEEe
Confidence 4455555543 2322 35677777774
No 54
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=94.19 E-value=0.35 Score=32.65 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
....+++||..+++ +.+.+..+|++++.+.... .+....|+++|.+.+..+.
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~------~~~~~~G~~~i~~~~~~~~ 59 (125)
T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDATVENPV------GSEPRSGTAAIREFYANSL 59 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESST------TSCCEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCC------CCCCccCHHHHHHHHHHhc
Confidence 45566777777775 6788999999999876432 1247899999999999875
No 55
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=94.08 E-value=0.3 Score=35.66 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
++..+++||..+++ +.+.+..+|++++.+..+ .+....|+++|.+.+..++
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p-------~g~~~~G~e~i~~~~~~~~ 73 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDIN-------QGERQMGKARFAAFMEKMN 73 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECT-------TSCEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECC-------CCCCcCCHHHHHHHHHHHH
Confidence 46778888888875 678899999999996321 1257889999999999876
No 56
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=93.95 E-value=0.14 Score=35.75 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCC-CCcccceecCHHHHHHHHhhCC--CccccEEEeEE
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDA-PNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV 103 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~-~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~sv 103 (177)
++.++++||..++. +.+.|..+|++++.+.-...+. ...++....|+++|.+.+..+- +...++++..+
T Consensus 10 ~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 10 AQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 45677777778875 7788999999999986431000 0011257889999999887641 11455665443
No 57
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=93.43 E-value=1.4 Score=31.10 Aligned_cols=107 Identities=10% Similarity=0.061 Sum_probs=58.6
Q ss_pred HHHHHHHHHHh-cChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCCCcEEE
Q psy6106 37 EFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVV 115 (177)
Q Consensus 37 ~Fv~~YY~~l~-~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~ilI 115 (177)
...++|+..+. .+.+.|..+++++..+.+.+ ....++++..+.+.+-........+.....+..+++..++
T Consensus 18 ~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~--------G~~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d~Avv 89 (134)
T 3fsd_A 18 FYEERLRAAMLTGDLKGLETLLADDLAFVDHT--------GCVKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDGRVV 89 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--------SCEECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTTEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC--------CcCccHHHHHHHHHcCCceEEEEEEeccEEEEeCCCEEEE
Confidence 34455555555 58999999999998877632 2234566666666542211234455566667766544333
Q ss_pred EEEeEee--eCCCC-CceeEEEEEEEeeCCCc--EEEEcceE
Q psy6106 116 QVSGELS--NGGQP-MRRFTQTFVLAAQSPKK--YYVHNDIF 152 (177)
Q Consensus 116 ~V~G~v~--~~~~~-~r~FsqtFvL~~~~~~~--y~I~nD~f 152 (177)
+..-.+. .++.+ ...+-+|-+..+. +++ |.|.....
T Consensus 90 ~~~~~~~~~~~g~~~~~~~~~t~vw~k~-~g~~gWriv~~h~ 130 (134)
T 3fsd_A 90 VVRAVTAGVYDGEAFTETLRFTRIWRRT-QGPAGWKLVAGHC 130 (134)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEEE-TTTTEEEEEEEEE
T ss_pred EEEEEEEEEeCCcEEEEEEEEEEEEEEC-CCCccceEeEeEE
Confidence 3322222 13333 1223344444555 467 99887554
No 58
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=93.30 E-value=1.1 Score=31.06 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 37 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 37 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
.-+++||..+++ +.+.+..+|+++..+...+...+.-.+....|+++|.+.+..+.
T Consensus 7 ~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~ 63 (132)
T 3ebt_A 7 QTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVP 63 (132)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHH
Confidence 446666667775 67889999999998765320000000146789999999998875
No 59
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=93.21 E-value=0.67 Score=32.80 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
...+++||..++. +.+.|..+|++++.+.....+ ...+....|+++|.+.+..+.
T Consensus 13 ~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~--~g~~~~~~G~~~i~~~~~~~~ 68 (150)
T 1s5a_A 13 CETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAP--EGSPKRIEGKAAIYDYIKDYP 68 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC--TTSCSEEESHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCC--CCCCccccCHHHHHHHHHHhh
Confidence 4566777777775 678899999999998653100 011136799999999998764
No 60
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=93.15 E-value=1.4 Score=35.83 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 26 QAPAHLHRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 26 ~~~~~~~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
.+|..-..-.+..+++||..++. +.+.|..+|++++.+.... ......|+++|.+++..+.
T Consensus 131 ~~~~~~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~------~~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 131 ARPAPDEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPV------GSWTRTGLEALRAHATMAV 192 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESST------TSCEEESHHHHHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCC------CCCcccCHHHHHHHHHHhh
Confidence 34555566778889999999986 7888999999999986431 1246899999999998875
No 61
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=93.10 E-value=0.49 Score=32.66 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
....+.+||..+++ +.+.|..+|++++.+...+ .+....|+++|.+.+..+.
T Consensus 9 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~------~~~~~~G~~~i~~~~~~~~ 61 (131)
T 1oh0_A 9 VQGLMARYIELVDVGDIEAIVQMYADDATVEDPF------GQPPIHGREQIAAFYRQGL 61 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESST------TSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCC------CCCCcccHHHHHHHHHHHh
Confidence 45667777778886 6788999999999886432 1247899999999988764
No 62
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=93.03 E-value=1.6 Score=30.54 Aligned_cols=57 Identities=5% Similarity=0.017 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCC-CcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAP-NRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~-~~~~~~~~G~~~I~~~l~~lp 92 (177)
...+.+||..++. +.+.+..+|++++.+........ .-.+....|+++|.+.+..+.
T Consensus 10 ~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~ 68 (139)
T 2a15_A 10 LIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHI 68 (139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhc
Confidence 4456667777775 67889999999998864211000 002233799999999999875
No 63
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=92.90 E-value=0.64 Score=34.12 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
...+++||..++. +.+.|..+|++++.+...+.+ ...+....|+++|.+.+..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~--~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAP--PGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCC--TTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCC--CCCCcccCCHHHHHHHHHHHH
Confidence 4566778888886 678899999999998754311 011235789999999998875
No 64
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=92.83 E-value=0.15 Score=36.03 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhc-Ch----hhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEe-EEeeee
Q psy6106 36 REFVRQYYTLLNQ-AP----AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIR-QVDSQA 107 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r----~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~-svD~Q~ 107 (177)
..++++|...++. ++ +.|..+|++++.+.-.. ..+.|+++|..++..+- +...++.+. .++.++
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~--------~~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPL--------MQGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSS--------CEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCC--------CCcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 3456666666665 33 46999999999997422 35899999999877542 225777776 555554
No 65
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=92.66 E-value=1.5 Score=31.04 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
...++.||..+++ +.+.|..+|++++.+...+. ....|+++|.+.+..+.
T Consensus 25 ~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~-------~~~~G~~~i~~~~~~~~ 75 (149)
T 1nww_A 25 EKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPL-------PPAYGRDAVEQTLAGLF 75 (149)
T ss_dssp HHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTS-------CCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCC-------CCccCHHHHHHHHHHHH
Confidence 4566667777776 67889999999999865431 35789999999998875
No 66
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=92.40 E-value=2.2 Score=30.68 Aligned_cols=114 Identities=10% Similarity=0.072 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeEEeeeeeC
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVDSQATL 109 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~svD~Q~~~ 109 (177)
.....++.+|...+|. +.+.+..+|.+++.+.+.+ .....|+++|.+.+..+. +..++|.+..+......
T Consensus 11 ~~I~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~-------~~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~g 83 (150)
T 3ef8_A 11 RAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAP-------NFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVS 83 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEET-------TEEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhhccCceEEEccC-------CCCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcC
Confidence 3456788899999997 5678999999999987632 124689999999887752 23567878776555444
Q ss_pred CCcEEEEEEeEe--eeCCCCCcee---EEEEEEEeeCCCcEEEEcceEEe
Q psy6106 110 GNGVVVQVSGEL--SNGGQPMRRF---TQTFVLAAQSPKKYYVHNDIFRY 154 (177)
Q Consensus 110 ~~~ilI~V~G~v--~~~~~~~r~F---sqtFvL~~~~~~~y~I~nD~fr~ 154 (177)
++.......-.+ ...+.+...+ .-...+++. +++|.|..=.+..
T Consensus 84 dd~A~~~~~~~~~~~~~~~~~~~~~~gry~d~~~r~-dg~Wri~~r~~~~ 132 (150)
T 3ef8_A 84 ETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKV-DGQWKFKRRELRT 132 (150)
T ss_dssp TTEEEEEEEEEEEEEESSSSCCEEEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEEEccCCCCeEEEEEEEEEEEEEE-CCEEEEEEEEEEe
Confidence 332222221111 1111111111 122334444 5899999887744
No 67
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=92.35 E-value=0.98 Score=31.76 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHH-HHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIH-EHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~-~~l~~lp 92 (177)
...+++||..+.. +.+.|..+|+++..+...+.. -......|+++|. +.+..+.
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~---p~~g~~~G~~~i~~~~~~~~~ 70 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGF---PCAGTYRSADEIVRNVFRRLG 70 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTS---TTCEEECSHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCC---ccceEEcCHHHHHHHHHHHHH
Confidence 4567777777775 678899999999997654310 0124678999995 5677654
No 68
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=92.01 E-value=1.8 Score=30.81 Aligned_cols=51 Identities=8% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
....+++||..++. +.+.|..+|+++..+...+ .....|+++|.+.+..+.
T Consensus 17 ~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~-------~~~~~G~~~i~~~~~~~~ 68 (149)
T 2bng_A 17 AIRAVEAFLNALQNEDFDTVDAALGDDLVYENVG-------FSRIRGGRRTATLLRRMQ 68 (149)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETT-------TEEEECHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCC-------CCCccCHHHHHHHHHHHH
Confidence 35567777777775 6788999999998875322 146789999999999886
No 69
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=91.91 E-value=2.1 Score=29.37 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
...+++||..++. +.+.+..+|++++.+...+ .+....|+++|.+.+..+
T Consensus 6 ~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~------g~~~~~G~~ai~~~~~~~ 56 (123)
T 2k54_A 6 ELPVQKQLEAYNARDIDAFMAWWADDCQYYAFP------ATLLAGNAAEIRVRHIER 56 (123)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETT------TEEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCC------CCcccCCHHHHHHHHHHH
Confidence 4567777778875 6788999999999874321 113578999999999875
No 70
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=91.56 E-value=2.9 Score=30.28 Aligned_cols=99 Identities=10% Similarity=0.169 Sum_probs=65.8
Q ss_pred cChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCc-cccEEEeEEeeeeeCCCcEEE-EEEeEeeeCC
Q psy6106 48 QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR-DCHAKIRQVDSQATLGNGVVV-QVSGELSNGG 125 (177)
Q Consensus 48 ~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~-~~~~~I~svD~Q~~~~~~ilI-~V~G~v~~~~ 125 (177)
.+++.+..+|+++.++- .. ..+..+.|.+++..++..+... .++++|.....|...+.+++- .+. ...++
T Consensus 30 gD~~~~~~lyapDvt~f-Dp-----~~~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD~A~~~y~l~--~~~~~ 101 (134)
T 3ke7_A 30 TDPMAFVELSDTDVIYF-DP-----SLETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQNIAVLTFNLD--SYLSD 101 (134)
T ss_dssp SCTTHHHHHEEEEEEEE-CT-----TCSSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETTEEEEEEEEE--EEETT
T ss_pred CCHHHHHHhcCCCEEEE-cC-----CCccccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCceEEEEEEEE--EeeCC
Confidence 47899999999998863 21 1225688999999999986522 256777776666644333331 111 11222
Q ss_pred CCCceeEEEEEEEeeCCCcEEEEcceEEee
Q psy6106 126 QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 126 ~~~r~FsqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
. ......|.|.++.++|+|.|...-..++
T Consensus 102 ~-~~~~r~T~V~~r~~dG~W~ivH~H~S~~ 130 (134)
T 3ke7_A 102 K-VIKWNCTEVYRRNPDNQWKIIQTHWSYV 130 (134)
T ss_dssp E-EEEEEEEEEEEECTTSBEEEEEEEEEES
T ss_pred C-cEEEEEEEEEEEcCCCcEEEEEEeeccc
Confidence 2 3567788999888568999998877664
No 71
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=91.50 E-value=3 Score=30.34 Aligned_cols=117 Identities=9% Similarity=0.013 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCCCccccEEEeEEeeeeeCCCc
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNG 112 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp~~~~~~~I~svD~Q~~~~~~ 112 (177)
--...++++...+.+ +.+.+..+|+++..+.=.+ -.+..+.|.+.+...+...+.+..+..+.....+..+++.
T Consensus 13 eI~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~-----~~g~~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~ 87 (143)
T 2f86_B 13 DIVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPE-----ALGNLIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDA 87 (143)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGG-----GTTCCEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTE
T ss_pred HHHHHHHHHHHHHHccCHHHHHHhcCCCEEEEccC-----cCCccccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCE
Confidence 345677777777775 7888999999988763111 1235678998888665442222355666667677766343
Q ss_pred EEEE---EEeEeeeCCCC-CceeEEEEEEEeeCCCcEEEEcceEEeec
Q psy6106 113 VVVQ---VSGELSNGGQP-MRRFTQTFVLAAQSPKKYYVHNDIFRYQD 156 (177)
Q Consensus 113 ilI~---V~G~v~~~~~~-~r~FsqtFvL~~~~~~~y~I~nD~fr~~d 156 (177)
.++. .++....+|.+ ...+-.|.|+++. +|+|.|...-.....
T Consensus 88 Av~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~-~g~WkivH~H~S~~~ 134 (143)
T 2f86_B 88 ACVAYVKLTQFLDRNGEAHTRQSQESRVWSKK-QGRWVCVHVHRSTQP 134 (143)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEEEEEEE-TTEEEEEEEEEEC--
T ss_pred EEEEEEeeeeeccCCCCeeeEEEEEEEEEEEe-CCcEEEEEEeECCCC
Confidence 2222 22333234443 3356788888887 589999988776543
No 72
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=91.20 E-value=1.4 Score=31.74 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
...+++||..+.. +.+.|..+|+++..+...+.. --.....|+++|.+.+..+.
T Consensus 23 ~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~---~~~g~~~G~~~v~~~~~~~~ 77 (148)
T 3g8z_A 23 IDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNH---QFSGTHRGMAVVGPMLGKMM 77 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSS---TTCEEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCC---CCCceEcCHHHHHHHHHHHH
Confidence 4566777777775 678899999999998765421 01135789999999887653
No 73
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=90.76 E-value=3 Score=28.95 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
....+++||..++. +.+.+..+|++++.+..++ +....|+++|.+++..++
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~-------~~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQ-------GPREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT-------SCEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCC-------CCceEcHHHHHHHHHHHh
Confidence 45677888888875 7788999999998754321 257899999999999886
No 74
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=90.39 E-value=0.37 Score=35.14 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
......+.+||..+.+ +.+.|..+|++++.+.-.. ....+.|+++|..+|..+-
T Consensus 9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~------~~~~~~G~~~v~~~~~~~~ 63 (143)
T 3mso_A 9 ANAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPM------AHKPYAGAPVVSMILNTVL 63 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSS------CSSCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCC------CCCCccCHHHHHHHHHHHH
Confidence 3456677777778876 6788999999999996321 1257899999999998764
No 75
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=89.85 E-value=0.6 Score=32.69 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhh
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 90 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~ 90 (177)
-.+..+++||..++. +.+.|..+|+++..+...+. ...+..+.|+++|.+.+..
T Consensus 18 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~---~~~g~~~~G~~~i~~~~~~ 72 (129)
T 3fh1_A 18 QTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVP---APDGARHAGRQACVQLWSA 72 (129)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCS---TTTCCEEESHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCC---CCCCCcccCHHHHHHHHHH
Confidence 345677777777775 67889999999999865431 1133567999999998875
No 76
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=89.59 E-value=2.8 Score=33.99 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
.+..+++||..++. +.+.|..+|.+++.+.... ......|+++|...+..+-
T Consensus 8 ~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~------~~~~~~Gr~ai~~~~~~~~ 60 (283)
T 3rga_A 8 RKEVALEYCRRVNAGELEGVLQLFAPDARLVDPL------GTEPVVGRAALAARLAPAL 60 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSS------SSCCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCC------CCCCcCcHHHHHHHHHHHH
Confidence 45567777778875 7888999999999986431 1246799999999998764
No 77
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=88.98 E-value=3.9 Score=27.71 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 37 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 37 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
..+++||..++. +.+.+..+|+++... |+. + .+....|+++|.+.+..+
T Consensus 6 ~~v~~~~~a~n~~D~~~~~~~~a~D~v~-h~~-~----~~~~~~G~~~~~~~~~~~ 55 (117)
T 3ff2_A 6 ETAKAMIAAYNAQDVDTYVSYMTDDACE-ANY-R----GDVVREGKEGTRSGLAAA 55 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTEEEEEEE-EET-T----SCEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHhcCCcEEE-EeC-C----CCccccCHHHHHHHHHHH
Confidence 456667777775 677899999998765 431 0 124678999999888765
No 78
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=88.79 E-value=0.62 Score=35.03 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 32 HRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 32 ~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
.......|++||..++. +.+.|..++++++.+-.++ ...+....|+++|.+.+..+.
T Consensus 9 ~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~----~~p~~~~~Greai~~~f~~~~ 66 (156)
T 3g16_A 9 RAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPA----GMYGGAFRGAAQIAHRWRTAV 66 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBT----TSTTSCEESHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCC----CCCCCCccCHHHHHHHHHHHH
Confidence 34566778888888886 6788999999999986532 112356789999999998765
No 79
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=88.66 E-value=3.2 Score=29.72 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 34 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 34 va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
-....+++||..+++ +.+.|..+|+++..+...+.. .-.....|+++|.+.+..+.
T Consensus 30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~---~~~g~~~G~~~i~~~~~~~~ 86 (156)
T 1tuh_A 30 QNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRS---RIAGDHKGREAIFAQFGRYG 86 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSS---TTCEEEESHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCC---CccceEcCHHHHHHHHHHHH
Confidence 345677888888876 678899999999987654411 01235789999999888753
No 80
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=88.54 E-value=0.41 Score=35.41 Aligned_cols=56 Identities=7% Similarity=0.113 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 31 LHRVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 31 ~~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
....+..++..|+..+.+ +.+.|..+|.+++.+.-.. ....+.|+++|..+|..+-
T Consensus 18 ~~~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~------~~~~~~G~~av~~~~~~~~ 74 (148)
T 3f8x_A 18 PNAAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPS------TFDPYHGKGPLMVILPAVF 74 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSS------CSSCEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCC------CCCCcCCHHHHHHHHHHHH
Confidence 346677888888888886 6788999999999986321 2257899999999998753
No 81
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=88.53 E-value=1.2 Score=30.98 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
...+++||..+.+ +.+.+..+|+++..+...+.. -......|+++|.+.+..+.
T Consensus 8 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~---p~~g~~~G~~~i~~~~~~~~ 62 (135)
T 3fgy_A 8 VQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEW---PLAGTHRGHAALAALLQKAS 62 (135)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSS---TTCEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCC---ccceEEeCHHHHHHHHHHHH
Confidence 4556666667765 678899999999987654410 01246789999999988764
No 82
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=88.45 E-value=5.4 Score=28.64 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCh--hhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 37 EFVRQYYTLLNQAP--AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 37 ~Fv~~YY~~l~~~r--~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
.-+++|+..+.+.. +.|..||++++.+.-+..+ .. ....|+++|.+.++.+.
T Consensus 24 evv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~~---~~-~~~~G~eai~~~~~~~~ 77 (136)
T 3hk4_A 24 EIAKDFTELLKQGDNAGAAEKYNADDIASYEAMEG---PM-AVSHGKEALRQKSQWWQ 77 (136)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSCS---TT-SEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCCC---Cc-cccCCHHHHHHHHHHHH
Confidence 34555666776654 3589999999998643211 11 25789999999888664
No 83
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=86.32 E-value=0.24 Score=40.09 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC
Q psy6106 6 TPSPQCVGREFVRQYYTLLNQA 27 (177)
Q Consensus 6 ~~~~~~~~~~fv~~yy~~~~~~ 27 (177)
++....+|.+||+|||+++|+.
T Consensus 11 ~~~~~~~~~~Fv~~Yy~~fD~~ 32 (250)
T 1jkg_B 11 TENLKSLVLHFLQQYYAIYDSG 32 (250)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHHHCcC
Confidence 4456789999999999999997
No 84
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=85.67 E-value=1.1 Score=31.13 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=33.2
Q ss_pred HHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHH-HHhhCC
Q psy6106 38 FVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE-HIQQLN 92 (177)
Q Consensus 38 Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~-~l~~lp 92 (177)
.+++||..+.+ +.+.+..+|+++..+...+. .--.....|+++|.+ .+..+.
T Consensus 9 ~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~---~p~~g~~~G~~~~~~~~~~~~~ 62 (134)
T 3grd_A 9 IIRSTYEGSASSNAKHLAEALSEKVEWTEAEG---FPYGGTYIGVEAIMENVFSRLG 62 (134)
T ss_dssp HHHTTTSSCHHHHHHHHHHHEEEEEEEEECTT---STTCEEEESHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHhcCCCeEEEecCC---cccCcEEeCHHHHHHHHHHHHH
Confidence 34444445554 56789999999998765431 001146789999974 666553
No 85
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=85.33 E-value=5 Score=27.67 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
+..++.||..+.+ +.+.|..+++++..+...+ ....|++++.+.+..+.
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~--------g~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENFTFNGPM--------GHREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETT--------EEEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCC--------CcccCHHHHHHHHHHHH
Confidence 3455566667775 6788999999998876433 46789999999998875
No 86
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=85.26 E-value=4.2 Score=29.29 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeE
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQ 102 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~s 102 (177)
...+++||..++. +.+.+..+|+++..+... ....|++++.+.+..+- +...+++|..
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p---------~~~~G~~~~~~~~~~~~~~~~~~~~~i~~ 67 (158)
T 2gey_A 7 KALCLEMVAAWNRWDLSGIIKHWSPDIVHYSE---------DNEVSSADMVKLMEGGLKAFPDLQLEVKS 67 (158)
T ss_dssp HHHHHHHHHHHHTTCTHHHHTTEEEEEEEEET---------TEEECHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCC---------CCCCCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4566777777775 677899999999887541 35689999998877652 1145556544
No 87
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=85.03 E-value=2.7 Score=30.35 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 37 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 37 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
..+++||..++. +.+.|..+|++++..... .+....|+++|.+.+..+.
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~-------~~~~~~G~e~i~~~~~~~~ 71 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVN-------EGNIRVGKEKFAAFCAHMS 71 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEE-------TTEEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCC-------CCcceeCHHHHHHHHHHHH
Confidence 357777888875 778899999999984221 2256899999999988653
No 88
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=82.44 E-value=0.89 Score=31.61 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeEE
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV 103 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~sv 103 (177)
+..+++||..++. +.+.+..+|+++..+ .+ ...|++++.+.+..+- +...+++|..+
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~--~~---------~~~G~~~~~~~~~~~~~~~pd~~~~i~~~ 65 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEH--NG---------RPFGLSGYRDMLVKDFADIPDLRFEAEIL 65 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEE--TT---------BCCHHHHHHHHHHHHHHHCTTCCCCEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEe--CC---------CCCCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 4566677777775 567899999999865 22 4578988888776541 11455555443
No 89
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=82.09 E-value=0.55 Score=37.45 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC
Q psy6106 6 TPSPQCVGREFVRQYYTLLNQA 27 (177)
Q Consensus 6 ~~~~~~~~~~fv~~yy~~~~~~ 27 (177)
++..+.++.+||++||+++|+.
T Consensus 7 d~~~~~~~~~Fv~~Yy~~fDsd 28 (221)
T 1of5_A 7 NDALGQSSTDFATNFLNLWDNN 28 (221)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHccC
Confidence 5678899999999999999974
No 90
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=81.11 E-value=3.2 Score=29.03 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
+..+++||..++. +.+.+..+|+++..+...+ .+....|+++|.+.+..+
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~------~~~~~~G~~~~~~~~~~~ 55 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATL------EHGIHTGPKAFAQLVGWV 55 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGG------GGTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCC------CCCCCCCHHHHHHHHHHH
Confidence 4456666777765 6678999999998753211 111238999999888765
No 91
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=80.71 E-value=0.55 Score=37.39 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC
Q psy6106 6 TPSPQCVGREFVRQYYTLLNQA 27 (177)
Q Consensus 6 ~~~~~~~~~~fv~~yy~~~~~~ 27 (177)
++..+.++.+||++||+++|+.
T Consensus 10 ~~~~~~~~~~Fl~~Yy~~fDsd 31 (219)
T 1q40_B 10 DEDSRNLATNFIANYLKLWDAN 31 (219)
T ss_dssp ---CHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHccC
Confidence 4567889999999999999984
No 92
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=80.55 E-value=13 Score=26.28 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeE
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQ 102 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~s 102 (177)
...+++||..++. +.+.+..+|+++..+... .....|+++|.+.+..+- +...+++|..
T Consensus 7 ~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~--------~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~ 68 (152)
T 2gex_A 7 KERCLEMVAAWNRWDVSGVVAHWAPDVVHYDD--------EDKPVSAEEVVRRMNSAVEAFPDLRLDVRS 68 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECT--------TSCEECHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCC--------CCCCCCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4556666767765 567899999999887421 135789999998877642 1145555544
No 93
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=80.35 E-value=8.5 Score=27.86 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeE
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQ 102 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~s 102 (177)
-...+++||..++. +.+.+..+|+++..+.... .....|++++.+.+..+. +...++.|..
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~-------~g~~~G~e~~~~~~~~~~~~~pd~~~~i~~ 99 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLP-------KGRPQGTEGLKFAAQNFRKIVPNIHCEIED 99 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCC-------TTCCSSHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCC-------CCCCCCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 46678888888886 6788999999998763211 125689999998887653 2244555543
No 94
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=80.21 E-value=4.5 Score=28.45 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHH-HHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeEE
Q psy6106 36 REFVRQYYT-LLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV 103 (177)
Q Consensus 36 ~~Fv~~YY~-~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~sv 103 (177)
+..+++||. .++. +.+.+..+|+++..+.++... . ......|++++.+.+..+. +...+++|..+
T Consensus 9 ~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~--~-~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~ 77 (146)
T 3f9s_A 9 KEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGD--P-WEGRELDVAGYKERVKTLRAAFPDQCFDIQGL 77 (146)
T ss_dssp HHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTC--T-TTTCEECHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCC--C-CCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEE
Confidence 345566664 5554 678899999999985454210 0 1135789999988877542 11455666543
No 95
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=80.10 E-value=4.9 Score=28.31 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=38.0
Q ss_pred HHHHHHHH-HHhc-C--hhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC--CccccEEEeEE
Q psy6106 37 EFVRQYYT-LLNQ-A--PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV 103 (177)
Q Consensus 37 ~Fv~~YY~-~l~~-~--r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp--~~~~~~~I~sv 103 (177)
..+++||. .++. + .+.+..+|+++..+..+.. ....|++++.+.+..+- +...+++|..+
T Consensus 13 ~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~ 78 (146)
T 3kkg_A 13 ETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN-------QAVEGIEQAIAFNAVLFEGFPRLEVVVENV 78 (146)
T ss_dssp HHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS-------CCEESHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC-------CCCCCHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 44444454 4443 5 6789999999988754431 36789999988877542 11455555443
No 96
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=78.98 E-value=18 Score=26.98 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhccccCCceEEec---CCCCCCcccceecCHHHHHHHHhhCC-----CccccEEEeEE
Q psy6106 33 RVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHG---GLDAPNRETKQVVGQEQIHEHIQQLN-----FRDCHAKIRQV 103 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~---g~~~~~~~~~~~~G~~~I~~~l~~lp-----~~~~~~~I~sv 103 (177)
.....++.+|...+|. +.+.+..+|.+++.+.+. |.. ........|+++|.+.+.... +..++|.+...
T Consensus 26 ~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~--~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~ 103 (179)
T 3ejv_A 26 TIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGA--SRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAP 103 (179)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGC--CEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCc--CCCcceecCHHHHHHHHHHhhcccccccceEEEcCCC
Confidence 4567889999999997 667899999999997663 200 001136789999999988753 23466777665
Q ss_pred eeee
Q psy6106 104 DSQA 107 (177)
Q Consensus 104 D~Q~ 107 (177)
..-.
T Consensus 104 ~I~v 107 (179)
T 3ejv_A 104 IIVI 107 (179)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 97
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=77.60 E-value=2.5 Score=30.38 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 35 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 35 a~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
.+..+++||..++. +.+.+..+|+++..+...+ .+....|+++|.+.+..+
T Consensus 13 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~------~~~~~~G~~~~~~~~~~~ 64 (153)
T 2f99_A 13 QIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTL------EFTSLRGPELFAINVAWV 64 (153)
T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGT------TTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCC------CCCCCCCHHHHHHHHHHH
Confidence 45566777777775 6678999999997753211 112248999999888765
No 98
>3e99_A Benzoate 1,2-dioxygenase beta subunit; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Burkholderia mallei atcc 23344} SCOP: d.17.4.4
Probab=74.00 E-value=24 Score=26.06 Aligned_cols=128 Identities=10% Similarity=0.156 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhcCh-hhHhccccCCceEEecCCCC-------CCcccce--ecCHHHHHHHH---------hhCCCc
Q psy6106 34 VGREFVRQYYTLLNQAP-AHLHRFYSENSLFIHGGLDA-------PNRETKQ--VVGQEQIHEHI---------QQLNFR 94 (177)
Q Consensus 34 va~~Fv~~YY~~l~~~r-~~L~~fY~~~S~~~~~g~~~-------~~~~~~~--~~G~~~I~~~l---------~~lp~~ 94 (177)
-..+|+.+|-.+||..+ +....+|.+++.+.....+. +..+... ..++..+...+ +..|..
T Consensus 9 ~i~~~l~~~a~~lD~~~~~~w~~lf~~D~~Y~~p~~~~~~~~~~d~~~~~~~i~~~~~~~L~~RV~rl~~~~~~~~~p~~ 88 (164)
T 3e99_A 9 DIQAFLYRESRLLDDKAWDAWLDCYRADAVFWMPSWDDADALVTDPQREISLIYYPNRQGLEDRVFRIKTERSSATVPDT 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEECCCC-----------CEEEEESSHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHHhccccHHHHHHhcCCCEEEEEeccccccccccCCCCcceEEEcCCHHHHHHHHHHHhCccccccCCCc
Confidence 34678899999999854 66889999999987654210 0011111 35565555433 345666
Q ss_pred cccEEEeEEeeeeeCCCcEEEEEEeEeee-CCCCCcee--EEEEEEEeeCCCcEEEEcceEEeecccCCcc
Q psy6106 95 DCHAKIRQVDSQATLGNGVVVQVSGELSN-GGQPMRRF--TQTFVLAAQSPKKYYVHNDIFRYQDFLVDEE 162 (177)
Q Consensus 95 ~~~~~I~svD~Q~~~~~~ilI~V~G~v~~-~~~~~r~F--sqtFvL~~~~~~~y~I~nD~fr~~d~~~~~~ 162 (177)
.++|-|+.+-..+..++.+-+...-.+.. .......| .-...|.+. +++|.|.+=...+....+...
T Consensus 89 rtrH~vsnv~v~~~~~~~~~v~s~~~v~~~r~~~~~~~~G~~~d~L~r~-~~~wri~~R~v~ld~~~i~~~ 158 (164)
T 3e99_A 89 RTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAIDFS-GDAPKIVSKYVVLKNDYINQL 158 (164)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECS-SSSCEEEEEEEEESCCC---C
T ss_pred eEEEEEeCEEEEEeCCCEEEEEEEEEEEEECCCCeEEEEEEEEEEEEEE-CCEEEEEEEEEEEcCcccccc
Confidence 78999988877654444333333332221 11111112 233456655 578999887776665444433
No 99
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=73.23 E-value=4 Score=30.45 Aligned_cols=50 Identities=10% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 36 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 36 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
..++++|+..+.+ +.+.|..+|.+++.+.-.. ...++.|+++|...|..+
T Consensus 21 ~~~v~~f~~A~~~gD~~aL~~LlA~Dvv~~sP~------~~~p~~Gr~av~~~l~~~ 71 (155)
T 3flj_A 21 HPTIARMQEVVAKGDESLIHALLAEDVRFMPPT------YYKTWTGRDPVAAVLGHV 71 (155)
T ss_dssp CHHHHHHHHHHTTTCHHHHHTTEEEEEEEECSS------SSCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHhcCCCEEEECCC------CCCCcCCHHHHHHHHHHH
Confidence 3578888888886 6788999999999986321 235789999999988764
No 100
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=69.25 E-value=8.6 Score=27.56 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=36.9
Q ss_pred HHHHHHHHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHH----HHhhCCC
Q psy6106 39 VRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE----HIQQLNF 93 (177)
Q Consensus 39 v~~YY~~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~----~l~~lp~ 93 (177)
+++=...+.. +-+.|...|++++.+.|++. ...+.|++++.+ .+..+|.
T Consensus 8 VqrlW~al~AgD~D~l~adyaeDaV~i~P~s------a~vl~GR~~~r~a~~~L~~~lP~ 61 (120)
T 3lyg_A 8 VQRGWEALGAGDFDTLVTDYVEKMIFIMPGQ------ADVLKGRQAFRSALDNLGEILPP 61 (120)
T ss_dssp HHHHHHHHHHTCHHHHGGGEEEEEEEECSST------TCEEESHHHHHHHHTTHHHHSCT
T ss_pred HHHHHHHHhcCCHHHHHHhcccCeEEEccCc------cceeecHHHHHHHHHHHHhhCCC
Confidence 4444445554 66889999999999999752 257899999999 6667774
No 101
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=62.45 E-value=39 Score=24.04 Aligned_cols=51 Identities=12% Similarity=0.283 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHH-HHh-cChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 32 HRVGREFVRQYYT-LLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 32 ~~va~~Fv~~YY~-~l~-~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
.+--+..|++||. .++ .+.+.+..+|+++... ++. ....|++++.+.+..+
T Consensus 26 ~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~-h~P--------~~~~G~e~~~~~~~~~ 78 (148)
T 3g0k_A 26 EQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQ-HSS--------LAEPSVEALKGFLDRV 78 (148)
T ss_dssp HHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEE-CCS--------SSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEE-cCC--------CCCCCHHHHHHHHHHH
Confidence 3455678888888 666 4677899999988554 321 2348999998888765
No 102
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=47.71 E-value=6.8 Score=30.57 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCc
Q psy6106 7 PSPQCVGREFVRQYYTLLNQAP 28 (177)
Q Consensus 7 ~~~~~~~~~fv~~yy~~~~~~~ 28 (177)
+....++.+|+++||+.+|..+
T Consensus 10 ~~~~~~v~~Fl~~yf~~yD~~d 31 (205)
T 3nv0_A 10 DEVRTLVEEFIITYYKIYDGAD 31 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3456799999999999999974
No 103
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=45.73 E-value=9.8 Score=29.32 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=18.2
Q ss_pred CccccCCCHHHHHHHHHHHHHHhcCCCc
Q psy6106 1 MVMEVTPSPQCVGREFVRQYYTLLNQAP 28 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~fv~~yy~~~~~~~ 28 (177)
|+|- +.+....+..|||+||.-+|.+.
T Consensus 8 ~~~~-~~~~~~aae~FVk~~y~aLd~~r 34 (184)
T 1of5_B 8 MVMN-DANQAQITATFTKKILAHLDDPD 34 (184)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCC
T ss_pred cccC-CccchhHHHHHHHHHHHHhcccc
Confidence 4565 45666889999999999999854
No 104
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=39.13 E-value=1.5e+02 Score=23.77 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=27.2
Q ss_pred chhHHHHHHHHHHHHHHHHhc-ChhhHhccccCCceE
Q psy6106 28 PAHLHRVGREFVRQYYTLLNQ-APAHLHRFYSENSLF 63 (177)
Q Consensus 28 ~~~~~~va~~Fv~~YY~~l~~-~r~~L~~fY~~~S~~ 63 (177)
++....-...|+..||.++.+ +...|..|..+++.+
T Consensus 150 d~~~~~~i~~FL~tFFk~Y~sa~~~eL~yy~~~~~~l 186 (261)
T 3ub1_A 150 DADKTKKITDSVSQFFKAYYEQNQTQIDYFLVDGADI 186 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCHHHHHTTBCTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhcCCCcc
Confidence 345667778999999999975 677787777677753
No 105
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=37.48 E-value=25 Score=26.44 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=30.4
Q ss_pred HHhc-ChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC
Q psy6106 45 LLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 91 (177)
Q Consensus 45 ~l~~-~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l 91 (177)
..++ +|+.+..-|.++|.. +|. ...++|+++|..+|..-
T Consensus 29 aWNsrdP~rValAYT~Ds~W-RNR-------~eF~~GR~eI~~FLtrK 68 (166)
T 2imj_A 29 GWNSRDPERVSLAYTLDTQW-RNR-------AEFAHNREEAKAFLTRK 68 (166)
T ss_dssp HHTTTCHHHHHTTEEEEEEE-EET-------TEEECSHHHHHHHHHHH
T ss_pred hhcccChHHHhhccCCCCce-ecc-------ccccCcHHHHHHHHHHH
Confidence 4444 799999999999985 332 15789999999999853
No 106
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=35.68 E-value=19 Score=23.40 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCchhH
Q psy6106 8 SPQCVGREFVRQYYTLLNQAPAHL 31 (177)
Q Consensus 8 ~~~~~~~~fv~~yy~~~~~~~~~~ 31 (177)
++...|..|.++|-+.++..|+.+
T Consensus 14 HAraAA~DfA~~~~~f~~~nP~~~ 37 (69)
T 1q2h_A 14 HAQAAAVDFAHKFCRFLRDNPAYD 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc
Confidence 355688999999988888878664
No 107
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=29.54 E-value=25 Score=27.44 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCch
Q psy6106 6 TPSPQCVGREFVRQYYTLLNQAPA 29 (177)
Q Consensus 6 ~~~~~~~~~~fv~~yy~~~~~~~~ 29 (177)
|.++...+..|++.||..+|....
T Consensus 22 n~~~~r~aE~F~K~yyasLD~~r~ 45 (201)
T 1q42_A 22 NQDPTQQLEPFLKRFLASLDLLYT 45 (201)
T ss_dssp -CCGGGTHHHHHHHHHHHHSCCCC
T ss_pred CCCcchhHHHHHHHHHHHhccccc
Confidence 477888999999999999998753
No 108
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=29.50 E-value=1.4e+02 Score=20.71 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcCh-hhH-hccccCCceEEecCCCCCCcccceecCHHHHHHHHhhC-C-CccccEEEeEEeeee
Q psy6106 34 VGREFVRQYYTLLNQAP-AHL-HRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-N-FRDCHAKIRQVDSQA 107 (177)
Q Consensus 34 va~~Fv~~YY~~l~~~r-~~L-~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~l-p-~~~~~~~I~svD~Q~ 107 (177)
.-.+.+.+|-..+|... +.| ..+|.+++.+.+.+.. .......|+++|.+.+... + +..++|.+.......
T Consensus 12 ~I~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~t~H~~~n~~I~v 86 (159)
T 4gb5_A 12 EIIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVT---GMPPMTVPLSDYGAALRASFGAFSATHHAITGHVVTI 86 (159)
T ss_dssp HHHHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHH---CCCCEEECHHHHHHHHHHHHTTCSEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCC---CCcccccHHHHHHHHHHHhccCCceEEEecCCceEEE
Confidence 34567889999999854 666 4699999998764211 1124567999998887653 2 335677776654443
No 109
>2b1x_B Naphthalene dioxygenase small subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 2b24_B
Probab=29.00 E-value=1.6e+02 Score=21.08 Aligned_cols=124 Identities=10% Similarity=0.015 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhcC-hhhHhccccCCceEEecCCCCC------Ccc--c-ceecCHHHHHHHHhhC---------
Q psy6106 31 LHRVGREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAP------NRE--T-KQVVGQEQIHEHIQQL--------- 91 (177)
Q Consensus 31 ~~~va~~Fv~~YY~~l~~~-r~~L~~fY~~~S~~~~~g~~~~------~~~--~-~~~~G~~~I~~~l~~l--------- 91 (177)
......+|+.+|-..||.. -+.+..+|.+++.+.....+.. ... . ....|++.+...+..+
T Consensus 11 ~~~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~d~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~ 90 (172)
T 2b1x_B 11 TVREITEWLYMEAELLDAGKYREWLALVTEDLSYVVPIRVTREREAVTDVVEGMTHMDDDADSMEMRVLRLETEYAWAED 90 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEEEECCCCTTSSCCEEEEEEEEEECHHHHHHHHHHHTSSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhccCCEEEEEEeecccccccccCCCcccEEEeCCHHHHHHHHHHHhcCcccccC
Confidence 4456788999999999985 4678899999998854321100 011 1 1224888888755432
Q ss_pred CCccccEEEeEEeeeeeCC-CcEEEEEEeEee-eC-CCC-CceeE--EEEEEEeeCCCcEEEEcceEEee
Q psy6106 92 NFRDCHAKIRQVDSQATLG-NGVVVQVSGELS-NG-GQP-MRRFT--QTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 92 p~~~~~~~I~svD~Q~~~~-~~ilI~V~G~v~-~~-~~~-~r~Fs--qtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
|+..++|-|+.+-.-...+ +.+.+...-.+. .. +.+ ...|. -.-.|++. +++|.|..=...+.
T Consensus 91 p~~~t~H~i~n~~I~~~~~~d~a~~~s~~~~~~~~~~~~~~~~~~G~y~D~l~r~-~g~Wri~~R~v~ld 159 (172)
T 2b1x_B 91 PPSRSRHFVTNVRVATGDSEDEFKVTSNLLLYRTRGDVATYDVLSGERTDVLRRA-GDSFLMAKRVVLLD 159 (172)
T ss_dssp SCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEECTTCSCCEEEEEEEEEEEEEE-TTEEEEEEEEEEES
T ss_pred CCCeEEEEecCEEEEEecCCCEEEEEEEEEEEEEcCCCCceEEEEEEEEEEEEEc-CCEEEEEEEEEEEc
Confidence 5557889898776665443 433222221111 11 221 12221 22334455 57899998777654
No 110
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=26.80 E-value=32 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcChhhHhccccCCceEE
Q psy6106 36 REFVRQYYTLLNQAPAHLHRFYSENSLFI 64 (177)
Q Consensus 36 ~~Fv~~YY~~l~~~r~~L~~fY~~~S~~~ 64 (177)
..-+..|...+..+++-+.++|.+.|.+.
T Consensus 130 ~~~L~~~l~~l~~~~~~l~~~Y~~~a~lr 158 (198)
T 4giw_A 130 TKQLELWFSSLQEDAGLLSLMYMPTGFFS 158 (198)
T ss_dssp HTCHHHHHHHHHTCHHHHHHHBCTTSHHH
T ss_pred HCHHHHHHHHHHhChHHHHHHcCCchHhh
Confidence 44567899999999999999999999884
No 111
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Probab=26.28 E-value=1.8e+02 Score=20.76 Aligned_cols=122 Identities=9% Similarity=0.046 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhcCh-hhHhccccCCceEEecCCCC--CCcc-c-ceecCHHHHHHHHhhC------CCccccEEEe
Q psy6106 33 RVGREFVRQYYTLLNQAP-AHLHRFYSENSLFIHGGLDA--PNRE-T-KQVVGQEQIHEHIQQL------NFRDCHAKIR 101 (177)
Q Consensus 33 ~va~~Fv~~YY~~l~~~r-~~L~~fY~~~S~~~~~g~~~--~~~~-~-~~~~G~~~I~~~l~~l------p~~~~~~~I~ 101 (177)
.-..+|+.+|=..||..+ +....+|.+++.+.....+. ...+ + ....|+..+...+..+ |...++|-|+
T Consensus 14 ~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~p~~rt~H~vs 93 (163)
T 3eby_A 14 SAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKANVFPEHFNRHLIG 93 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHHTC----CEEEEEEC
T ss_pred HHHHHHHHHHHHHhccccHHHHHHhhcCCEEEEeeccccCCCCCCcEEEEcCCHHHHHHHHHHhhccCCCCCcceeEEEc
Confidence 456789999999999854 67889999999986643110 0001 1 1225788887766543 4446788887
Q ss_pred EEeeeeeCCCcEEEEEEeEee-e-CCCCCcee---EEEEEEEeeCCCcEEEEcceEEee
Q psy6106 102 QVDSQATLGNGVVVQVSGELS-N-GGQPMRRF---TQTFVLAAQSPKKYYVHNDIFRYQ 155 (177)
Q Consensus 102 svD~Q~~~~~~ilI~V~G~v~-~-~~~~~r~F---sqtFvL~~~~~~~y~I~nD~fr~~ 155 (177)
.+-.....++.+.+...-.+. . .+.+...| .-...|++. +++|.|.+=...+-
T Consensus 94 n~~i~~~~~d~a~v~s~~~~~~~~~~~~~~~~~~G~y~D~l~r~-~~gwri~~R~v~ld 151 (163)
T 3eby_A 94 RAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLS-GGTVRLKSRTCIYD 151 (163)
T ss_dssp CCEEEEEETTEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEECC-TTCCEEEEEEEEEC
T ss_pred CEEEEecCCCEEEEEEEEEEEEEcCCCccEEEEEEEEEEEEEEE-CCEEEEEEEEEEec
Confidence 765533333333322221111 1 11222212 123445554 57899887666543
No 112
>3gzx_B Biphenyl dioxygenase subunit beta; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} SCOP: d.17.4.4 PDB: 3gzy_B* 2yfi_B 2xr8_B* 2xrx_B* 2xsh_B 2xso_B 2yfj_B* 2yfl_B*
Probab=24.96 E-value=2.1e+02 Score=21.23 Aligned_cols=128 Identities=12% Similarity=0.037 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCh-hhHhccccCCceEEecCCCCCC-ccc-----------ceecCHHHHHHHHhhC-----
Q psy6106 30 HLHRVGREFVRQYYTLLNQAP-AHLHRFYSENSLFIHGGLDAPN-RET-----------KQVVGQEQIHEHIQQL----- 91 (177)
Q Consensus 30 ~~~~va~~Fv~~YY~~l~~~r-~~L~~fY~~~S~~~~~g~~~~~-~~~-----------~~~~G~~~I~~~l~~l----- 91 (177)
....-..+|+.+|-.+||..+ +....+|.+++.+.....+... .+. ....++..+...+..|
T Consensus 20 ~~~~~i~~~l~~~a~llD~~~~~~w~~lft~D~~Y~~p~~~~~~~~d~~~~~~~~~~~~~~~d~r~~L~~RV~rl~t~~~ 99 (186)
T 3gzx_B 20 ELQHQVEQFYYREAQLLDHHAFQAWFALLAEDIHYWMPIRTVRTAREQGLEYVPAGANAHFDDTHATMYGRIRQKTSDLN 99 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHhCCCCEEEEEecCCCccccccccccCccccceeeeCCHHHHHHHHHHHhcccc
Confidence 344566789999999999865 6678999999999775422110 011 0235787887777654
Q ss_pred ----CCccccEEEeEEeeeee-CCCcEEEEEEeEeee--CCCCCcee--EEEEEEEeeCCC-cEEEEcceEEeecc
Q psy6106 92 ----NFRDCHAKIRQVDSQAT-LGNGVVVQVSGELSN--GGQPMRRF--TQTFVLAAQSPK-KYYVHNDIFRYQDF 157 (177)
Q Consensus 92 ----p~~~~~~~I~svD~Q~~-~~~~ilI~V~G~v~~--~~~~~r~F--sqtFvL~~~~~~-~y~I~nD~fr~~d~ 157 (177)
|...++|-|+.+-.... .++.+.+...=.+.. .+.....| .-.-.|++..++ +|.|.+=...+...
T Consensus 100 ~a~~P~~RtrH~vsNv~v~~~~~~~~~~vrs~~~v~~~r~~~~~~~~~G~y~D~L~r~~~g~~wrI~~R~V~lD~~ 175 (186)
T 3gzx_B 100 WAEDPPSRTRHLVSNVIVREMDTPGTLEVASAFLLYRSRLERQVDVFAGERRDVLRIADNPLGFQIAKRTIILDQS 175 (186)
T ss_dssp GGGSSCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEECSSTTSEEEEEEEEEESCS
T ss_pred cccCCCceEEEEEcCEEEEEecCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEEcCCCceEEEEEEEEEEcCC
Confidence 66678999999888775 344333333322221 12211222 224466662357 89998877755543
No 113
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=21.10 E-value=61 Score=24.32 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcChhhHhccccCCceEEecCCCCCCcccceecCHHHHHHHHhhCC
Q psy6106 38 FVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92 (177)
Q Consensus 38 Fv~~YY~~l~~~r~~L~~fY~~~S~~~~~g~~~~~~~~~~~~G~~~I~~~l~~lp 92 (177)
=+..|...+-.+++.+.+||.+.|.+. .. +...|...|..|.
T Consensus 118 ~L~~~l~~l~~~~~~l~~~Y~~~All~-----------~~--e~~~l~~~L~gL~ 159 (180)
T 2dwk_A 118 KLSEYMKALINKKELLSEFYEVNALMM-----------EE--EGAIIAGLLVGLN 159 (180)
T ss_dssp CHHHHHHHHHTCHHHHTTTBCTTSGGG-----------SH--HHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhChHHHHhhCCCCcccc-----------Cc--cHHHHHHHHhCcc
Confidence 345688899999999999999999972 11 2346677776654
No 114
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=20.00 E-value=2.3e+02 Score=19.66 Aligned_cols=52 Identities=8% Similarity=0.163 Sum_probs=32.6
Q ss_pred HHHHHHHHhh-CCCccccEEEeEEeeeee--CCCcEEEEEEeEeeeCCCCCceeEEEEEE
Q psy6106 81 QEQIHEHIQQ-LNFRDCHAKIRQVDSQAT--LGNGVVVQVSGELSNGGQPMRRFTQTFVL 137 (177)
Q Consensus 81 ~~~I~~~l~~-lp~~~~~~~I~svD~Q~~--~~~~ilI~V~G~v~~~~~~~r~FsqtFvL 137 (177)
..+|.+.|.. .| +.++..|+..+. ..+.+.+.|.+.+...+. +..++-.|.|
T Consensus 76 ~~~i~~al~~~EP----Ri~~~~V~v~~~~~~~~~l~i~I~~~~~~~~~-~~~l~~~~~l 130 (134)
T 2ia7_A 76 ENEVKEALILWEP----RIELLSVTASPREAAEGRLLIDIEYRVRSTNT-RFNLVYPFYL 130 (134)
T ss_dssp HHHHHHHHHHHCT----TEEEEEEEEECTTGGGTEEEEEEEEEETTTTE-EEEEEEEEEC
T ss_pred HHHHHHHHHHhCC----CeEEEEEEEeecCCCCCEEEEEEEEEEecCCC-EEEEEEEEEe
Confidence 3556666665 34 456667766553 346799999998876544 3455555555
Done!