RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6106
(177 letters)
>3q90_A RAS GTPase-activating protein-binding protein 1; structural
genomics, structural genomics consortium, SGC, NT (A+B
proteins); 1.70A {Homo sapiens}
Length = 140
Score = 163 bits (415), Expect = 1e-52
Identities = 78/125 (62%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
VGREFVRQYYTLLNQAP LHRFY +NS ++HGGLD+ + V GQ++IH + NF
Sbjct: 12 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 71
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQS--PKKYYVHNDI 151
+CH KIR VD+ ATL +GVVVQV G LSN Q +RRF QTFVLA + K+YVHNDI
Sbjct: 72 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDI 131
Query: 152 FRYQD 156
FRYQD
Sbjct: 132 FRYQD 136
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET:
EPE; 2.74A {Drosophila melanogaster}
Length = 120
Score = 154 bits (391), Expect = 2e-49
Identities = 98/122 (80%), Positives = 105/122 (86%), Gaps = 7/122 (5%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
VGREFVRQYYTLLN+AP HLHRFY+ NS +IHG E+K VVGQ +IH IQQLNF
Sbjct: 6 VGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQREIHNRIQQLNF 58
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 153
DCHAKI QVD+QATLGNGVVVQV+GELSN GQPMRRFTQTFVLAAQSPKKYYVHNDIFR
Sbjct: 59 NDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 118
Query: 154 YQ 155
YQ
Sbjct: 119 YQ 120
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2
PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A
1jb4_A 1jb2_A 1qma_A
Length = 127
Score = 142 bits (360), Expect = 2e-44
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
++G F++ YY L + L Y + S G +Q G+ I E + L
Sbjct: 9 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG--------QQFQGKAAIVEKLSSLP 60
Query: 93 FRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
F+ I D Q T + ++ V G+L P+ F Q F+L + ND+F
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNI-NDAWVCTNDMF 119
Query: 153 RYQD 156
R
Sbjct: 120 RLAL 123
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural
genomics consortium, SGC, transport protein; 1.60A
{Cryptosporidium parvum} SCOP: d.17.4.2
Length = 129
Score = 140 bits (355), Expect = 7e-44
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
+G++FV+ YY L Y S+ Q GQ I LNF
Sbjct: 14 IGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED--------TQFQGQANIVNKFNSLNF 65
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 153
+ +I +VD Q + NG +V V+G++ +F+Q F L + + ND+FR
Sbjct: 66 QRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFR 125
Query: 154 Y 154
Sbjct: 126 L 126
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific
processing proteases(UB NTF2, protein-protein
recognition; 1.69A {Saccharomyces cerevisiae} SCOP:
d.17.4.2 PDB: 1zx2_A
Length = 154
Score = 139 bits (350), Expect = 9e-43
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNR-------ETKQVVGQEQIHE 86
+ F++ YY + P+ L FY+ + H + + T +V G+E I++
Sbjct: 14 ICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINK 73
Query: 87 HIQQLN--FRDCHAKIRQVDSQAT--LGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQ-S 141
+ + R K+ +D Q T L +++ +GE+ G P+ +F QTF+L +
Sbjct: 74 FFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSN 133
Query: 142 PKKYYVHNDIFRYQDFLVDEE 162
+ + NDI R+ E
Sbjct: 134 GSTFDITNDIIRFISNSFKLE 154
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_A
Length = 140
Score = 135 bits (340), Expect = 2e-41
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 19/134 (14%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
R EFV YYT +++ L R Y + + G V GQE + E + L
Sbjct: 15 RAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNA--------VSGQESLSEFFEMLP 66
Query: 93 FRDCHAKIRQVDSQATLG------NGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPK--- 143
+ +I VD Q V+V + G + G R F Q F+L AQ+
Sbjct: 67 SSEF--QISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNT 124
Query: 144 KYYVHNDIFRYQDF 157
+ + +D FR+QD+
Sbjct: 125 VWKIASDCFRFQDW 138
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces
cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Length = 125
Score = 133 bits (337), Expect = 5e-41
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
+ + F + YY + + L Y S+ Q+ G + I E + L F
Sbjct: 8 LAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFET--------SQLQGAKDIVEKLVSLPF 59
Query: 94 RDCHAKIRQVDSQAT-LGNGVVVQVSGELS-NGGQPMRRFTQTFVLAAQSPKKYYVHNDI 151
+ +I +D+Q V+V ++G+L + Q +RF+Q F L YYV NDI
Sbjct: 60 QKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPD-GNSYYVFNDI 118
Query: 152 FRY 154
FR
Sbjct: 119 FRL 121
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 154
Score = 125 bits (314), Expect = 3e-37
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 24 LNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQ 83
+N+ L ++F+ YY ++++ + Y++ S + G + G +
Sbjct: 26 INKEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNG--------NPINGYDS 77
Query: 84 IHEHIQQLNFRDCHAKIRQVDSQA-------TLGNGVVVQVSGELSNGGQPMRRFTQTFV 136
I E ++ L I+ +D+Q + G+++ V+G ++ G R FTQT +
Sbjct: 78 ICEFMKALPS--TQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLL 135
Query: 137 LAAQSPKKYYVHNDIFRYQD 156
L + KY V +D FRY D
Sbjct: 136 LGVE-DGKYKVKSDRFRYVD 154
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Length = 250
Score = 53.1 bits (127), Expect = 4e-09
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 32/159 (20%)
Query: 34 VGREFVRQYYTLLNQAP-AHLHRFYSENSLF-------------------------IHGG 67
+ F++QYY + + L Y + + +
Sbjct: 17 LVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKL 76
Query: 68 LDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIR-QVDSQATLGNGVVVQVSGEL----S 122
D R + + + +L + H VD A + V+G
Sbjct: 77 KDPTLRFRLLKHTRLNVVAFLNEL-PKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDG 135
Query: 123 NGGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDFLVDE 161
+R FT+TF+ S + ND ++ +E
Sbjct: 136 KSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEE 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 3e-04
Identities = 31/150 (20%), Positives = 44/150 (29%), Gaps = 36/150 (24%)
Query: 31 LHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGG--LDAPNRETKQVVGQEQIHEHI 88
LHR V Y L Y + + H G L +++ +
Sbjct: 445 LHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVF--- 497
Query: 89 QQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVH 148
L+FR KIR SG + N Q ++ + K Y
Sbjct: 498 --LDFRFLEQKIRHD--------STAWNASGSILNTLQQLKFY-----------KPYICD 536
Query: 149 ND------IFRYQDFLVDEEADLSRSDGED 172
ND + DFL E +L S D
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 29.1 bits (64), Expect = 1.0
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 34/159 (21%)
Query: 15 EFVRQYYTLLNQAPAHLHRVGREFVRQYY---TLLNQAPAHLHRFYSE----NSLF---- 63
+ + + + H+ TLL++ + +F E N F
Sbjct: 40 DMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 64 IHGGLDAPNRETKQVVGQ-EQIHEHIQ-----QLNFRDCHAKIRQVDSQATLGNGVVVQV 117
I P+ T+ + Q ++++ Q ++ + K+RQ + V++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID- 156
Query: 118 SGELSNGGQPMRRFTQTFVLAAQSPKKYYVH----NDIF 152
G L +G +A Y V IF
Sbjct: 157 -GVLGSGKT---------WVALDVCLSYKVQCKMDFKIF 185
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 205
Score = 37.0 bits (85), Expect = 0.001
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 39/179 (21%)
Query: 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRVGREFVRQYY--------TLLNQAPAHLHRFY 57
+ + + EF+ YY + + A R ++ + Y T++ Y
Sbjct: 9 SDEVRTLVEEFIITYYKIYDGADGQQTR--KQLLDAYDTNNSTFTHTVVCLWDPIKFVMY 66
Query: 58 SENSLF----------IHGGLDAPNRETKQVVGQEQIHEHIQQL-----NFRDCHAKIRQ 102
++ + ++ A NR ++ G I + +L
Sbjct: 67 PDSESYRMYLRTSHNVLNQEYFAANRASRISHGAMDIVVALSRLPATIHLMDTF-----V 121
Query: 103 VDSQATLGNGVVVQVSGE---------LSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIF 152
VD + + G N + FT+TF++A + K + +D
Sbjct: 122 VDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKVAIVSDQL 180
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export,
translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Length = 219
Score = 33.6 bits (76), Expect = 0.023
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 9/117 (7%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
+G+E + Y Q P H + LF P + +H ++
Sbjct: 95 IGQEQI---YKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMIT----LHGSFDEVAQ 147
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHND 150
+ S G+ + F +TFV+ V +D
Sbjct: 148 PEVDGSASSAPSGPRGGSRYHSGPKH--KRIPLSKKSFDRTFVVIPGPNGSMIVASD 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.17
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 26/78 (33%)
Query: 78 VVG--QEQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTF 135
+ QEQ+ +++ + N + L G V++S L NG +
Sbjct: 341 ISNLTQEQVQDYVNKTN--------------SHLPAGKQVEIS--LVNG-------AKNL 377
Query: 136 VLAAQSPKKYYVHNDIFR 153
V++ P+ Y N R
Sbjct: 378 VVSG-PPQSLYGLNLTLR 394
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich
repeat, nuclear transport; 2.8A {Saccharomyces
cerevisiae} SCOP: d.17.4.2
Length = 221
Score = 30.1 bits (67), Expect = 0.27
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLF 63
+F + L + L YS S F
Sbjct: 13 SSTDFATNFLNLWDNNREQLLNLYSPQSQF 42
>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural
genomics, structural genomics of pathogenic protozoa
consortium, SGPP; 2.35A {Leishmania major}
Length = 225
Score = 28.6 bits (63), Expect = 1.1
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 42 YYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIR 101
Y+ ++P+HLHR S+ + H G P + ++ Q + I A+
Sbjct: 64 YFLCTPESPSHLHRLCSDETWMYHAG--DP-LQLHVILKDPQDEDRIAAQPPAAPQAETD 120
Query: 102 QVDSQATLGNGVVVQVSGELSNGGQPMRRF 131
D++ V V + G
Sbjct: 121 TADARPKYQVYRRVLVGARVERGELLQYTV 150
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 1.1
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 19/85 (22%)
Query: 112 GVVVQV-----------SGELSNGGQPMRRFTQTFVLAAQSP--KKYYV-----HNDI-F 152
G+ +QV + P+ R L+ KK+ V +I
Sbjct: 117 GMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAI 176
Query: 153 RYQDFLVDEEADLSRSDGEDDVDSL 177
+ + + D VD L
Sbjct: 177 ELPPNEILFSENNDMDNNNDGVDEL 201
>3loi_A Putative uncharacterized protein; beta barrel, unknown function;
2.10A {Branchiostoma belcheri tsingtauense} PDB:
3lzz_A*
Length = 172
Score = 28.1 bits (62), Expect = 1.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 42 YYTLLNQAPAHLHRFYSENSLFIHGG 67
YY + P HR S+ + + G
Sbjct: 57 YYLMQAGQPDPFHRVKSDETFVHNLG 82
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme,
oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus
subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A*
2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Length = 363
Score = 27.5 bits (61), Expect = 2.2
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 14 REFVRQYYTLLNQAPAHLHRV 34
+ F+ + Y L + R+
Sbjct: 12 KAFIAECYQELGKEEEVKDRL 32
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 27.0 bits (60), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 91 LNFRDCHAKIRQVDSQATLGN---GVVVQV 117
+NFRD + A+LG+ GVVV+
Sbjct: 250 VNFRDALIALGMYPGVASLGSEGAGVVVET 279
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling,
hedgehog VIA CO- immunoprecipitation, membrane protein;
2.40A {Drosophila melanogaster}
Length = 506
Score = 26.8 bits (58), Expect = 4.7
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 14 REFVRQYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGG 67
+F + LL ++ + + F+R Y + + + E + G
Sbjct: 82 TKFKDIFTALLKESRTQFNSM---FIRTYGVIYERNSYVFSDLFKELETYFANG 132
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 26.5 bits (59), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 15 EFVRQYYTLLNQAPAHLHRVG 35
E + LLN+AP LHR+G
Sbjct: 433 EVIHGKVVLLNRAPT-LHRLG 452
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 26.3 bits (58), Expect = 6.6
Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 21/164 (12%)
Query: 22 TLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQ 81
L P F R ++ + + ++ + +++ +
Sbjct: 136 ESLGLGPYEARERADVFRRFNIQMVEE----MAMVENDTKARAAVYKRT-SAMLSEIITE 190
Query: 82 EQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMR------------ 129
++ H + Q + + + + A SG L G
Sbjct: 191 DREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSSTSGGLVPRGSSGMILIIYAHPYPHH 250
Query: 130 -RFTQTFVLAAQSPKKYYVHNDIFRYQDFLVD---EEADLSRSD 169
+ + A++ + + + Y DF +D E+ LSR+D
Sbjct: 251 SHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRAD 294
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 26.3 bits (58), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 15 EFVRQYYTLLNQAPAHLHRVG 35
E + LLN+AP LHR+G
Sbjct: 693 EVIHGKVVLLNRAPT-LHRLG 712
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 25.8 bits (56), Expect = 9.1
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 19 QYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSL 62
+Y+ L + +G + + A + RFY+ SL
Sbjct: 38 EYWKLQIFFTNVIQALGEHLKLRQQVI-ATATVYFKRFYARYSL 80
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 26.2 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 95 DCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTF 135
D A+I V +Q + G +V+V G L G+P+ T F
Sbjct: 1378 DTTAQINAVINQDS---GKMVEVCGTLKRDGKPVMYVTSQF 1415
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.400
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,715,138
Number of extensions: 149636
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 37
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)