RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6106
(177 letters)
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
{Cryptosporidium parvum [TaxId: 5807]}
Length = 117
Score = 144 bits (364), Expect = 1e-45
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
+G++FV+ YY L Y S+ Q GQ I LNF
Sbjct: 4 IGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED--------TQFQGQANIVNKFNSLNF 55
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 153
+ +I +VD Q + NG +V V+G++ +F+Q F L + + ND+FR
Sbjct: 56 QRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFR 115
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 125
Score = 133 bits (336), Expect = 2e-41
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
+G F++ YY L + L Y + S G +Q G+ I E + L F
Sbjct: 8 IGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG--------QQFQGKAAIVEKLSSLPF 59
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPKKYYVHNDIFR 153
+ I D Q T + ++ V G+L P+ F Q F+L + ND+FR
Sbjct: 60 QKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNI-NDAWVCTNDMFR 118
Query: 154 YQD 156
Sbjct: 119 LAL 121
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 130 bits (329), Expect = 4e-40
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 19/134 (14%)
Query: 33 RVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 92
R EFV YYT +++ L R Y + + G V GQE + E + L
Sbjct: 14 RAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEMLP 65
Query: 93 FRDCHAKIRQVDSQATLG------NGVVVQVSGELSNGGQPMRRFTQTFVLAAQ---SPK 143
+I VD Q V+V + G + G R F Q F+L AQ S
Sbjct: 66 S--SEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNT 123
Query: 144 KYYVHNDIFRYQDF 157
+ + +D FR+QD+
Sbjct: 124 VWKIASDCFRFQDW 137
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 127 bits (320), Expect = 5e-39
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 93
+ + F + YY + + L Y S+ Q+ G + I E + L F
Sbjct: 5 LAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFET--------SQLQGAKDIVEKLVSLPF 56
Query: 94 RDCHAKIRQVDSQATLGNG-VVVQVSGELS-NGGQPMRRFTQTFVLAAQSPKKYYVHNDI 151
+ +I +D+Q G V+V ++G+L + Q +RF+Q F L YYV NDI
Sbjct: 57 QKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPD-GNSYYVFNDI 115
Query: 152 FR 153
FR
Sbjct: 116 FR 117
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 124 bits (312), Expect = 1e-37
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLD-------APNRETKQVVGQEQIHE 86
+ F++ YY + P+ L FY+ + H T +V G+E I++
Sbjct: 6 ICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINK 65
Query: 87 HIQQLN--FRDCHAKIRQVDSQAT--LGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQ-S 141
+ + R K+ +D Q T L +++ +GE+ G P+ +F QTF+L +
Sbjct: 66 FFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSN 125
Query: 142 PKKYYVHNDIFRY 154
+ + NDI R+
Sbjct: 126 GSTFDITNDIIRF 138
>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein,
TAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 35.6 bits (82), Expect = 0.001
Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 30/145 (20%)
Query: 36 REFVRQYYTLLNQAP-AHLHRFYSENSLF-------------------------IHGGLD 69
F++QYY + + L Y + + + D
Sbjct: 19 LHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKD 78
Query: 70 APNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSG---ELSNGGQ 126
R + + + +L VD A + V+G E+ +
Sbjct: 79 PTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSR 138
Query: 127 P-MRRFTQTFVLAAQSPKKYYVHND 150
+R FT+TF+ S + ND
Sbjct: 139 DSLRAFTRTFIAVPASNSGLCIVND 163
>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor
MEX67 {Yeast (Candida albicans) [TaxId: 5476]}
Length = 205
Score = 30.8 bits (69), Expect = 0.062
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 38 FVRQYYTLLNQAPAHLHRFYSENSLF 63
F+ Y L + + L Y S F
Sbjct: 8 FIANYLKLWDANRSELMILYQNESQF 33
>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor
MEX67 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 221
Score = 28.4 bits (63), Expect = 0.37
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 34 VGREFVRQYYTLLNQAPAHLHRFYSENSLF 63
+F + L + L YS S F
Sbjct: 13 SSTDFATNFLNLWDNNREQLLNLYSPQSQF 42
>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 102
Score = 26.2 bits (58), Expect = 1.2
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 76 KQVVGQEQIHEHIQQLNFRDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTF 135
K+++G I ++Q F + + + + A V +QV L NG + +R F F
Sbjct: 22 KKILGDYDIK--VEQAEFSELN-----LVAHADGTYAVDMQV---LRNGTKVVRSFRPDF 71
Query: 136 VLAAQSPKKYYVHND 150
VL Q + D
Sbjct: 72 VLIRQHAFGMAENED 86
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 135
Score = 26.3 bits (58), Expect = 1.2
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 50 PAHLHRFY----SENSLFIHGGLDAPNRETKQ 77
H H + + ++ I GGLD + K+
Sbjct: 4 ELHYHLVWLTDAAGHAGSISGGLDLVEKRLKE 35
>d1k3va_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Porcine parvovirus [TaxId: 10796]}
Length = 542
Score = 27.2 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 19 QYYTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSEN 60
+YT+ N P HL R G EF Y + P L + N
Sbjct: 206 MFYTIENAVPIHLLRTGDEFSTGIYH-FDTKPLKLTHSWQTN 246
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
domain {Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 27.0 bits (60), Expect = 1.3
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 22 TLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHR 55
L N+A + F+ + Y L + R
Sbjct: 6 ILWNEA--------KAFIAECYQELGKEEEVKDR 31
Score = 26.2 bits (58), Expect = 2.2
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 14 REFVRQYYTLLNQAPAHLHRV 34
+ F+ + Y L + R+
Sbjct: 12 KAFIAECYQELGKEEEVKDRL 32
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 121
Score = 25.9 bits (57), Expect = 2.0
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 52 HLHRFYS----ENSLFIHGGLDAPNRETKQ 77
H+F+ +++ F+ L +E +
Sbjct: 8 FEHQFWLKVLTDHAQFLLDALAPKEKEDIK 37
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042
{Bacillus cereus [TaxId: 1396]}
Length = 134
Score = 25.2 bits (55), Expect = 3.8
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 52 HLHRFY----SENSLFIHGGLDAPNRETKQVVGQ-----EQIHEHIQQLNFRDCHAKIRQ 102
+ RF+ E+S F+ G + + + Q E I + +I++
Sbjct: 15 NEIRFWSRIMKEHSFFLRLGFRCEDTQLIEEANQFYRLFEHIEQIAHSYTNETDPEQIKR 74
Query: 103 VDSQA 107
+++
Sbjct: 75 FNAEV 79
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 25.3 bits (54), Expect = 5.3
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 6 TPSPQCVGREFVRQYYTLLNQAPAH-LHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFI 64
P V + ++Y A +H + + + + +A ++ +E +F+
Sbjct: 32 AQKPSQV-IDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFV 90
Query: 65 HGGLDAPNR 73
G + N
Sbjct: 91 RGTTEGINL 99
>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Canine parvovirus [TaxId: 10788]}
Length = 548
Score = 25.3 bits (55), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 19 QYYTLLNQAPAHLHRVGREFVRQYY 43
Q+YT+ N P HL R G EF +
Sbjct: 206 QFYTIENSVPVHLLRTGDEFATGTF 230
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 24.7 bits (54), Expect = 7.1
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 14 REFVRQYYTLLNQA--PAHLHRV 34
R+F+ QYY+ + ++ AH R+
Sbjct: 64 RDFINQYYSSIKRSGSQAHEERL 86
Score = 24.7 bits (54), Expect = 7.8
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 36 REFVRQYYTLLNQA--PAHLHR 55
R+F+ QYY+ + ++ AH R
Sbjct: 64 RDFINQYYSSIKRSGSQAHEER 85
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein
BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Length = 130
Score = 24.0 bits (52), Expect = 8.8
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 52 HLHRFYS----ENSLFIHGGLDAPNRETKQ 77
+ F+ +++ FI LD R+
Sbjct: 9 KENVFFLRIMADHAKFIGHLLDPSERKLVD 38
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 24.2 bits (52), Expect = 9.0
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 21 YTLLNQAPAHLHRVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPN 72
+++ + + EFV + T L A HR +H L N
Sbjct: 93 ASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPAN 144
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 158
Score = 24.0 bits (52), Expect = 9.1
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 94 RDCHAKIRQVDSQATLGNGVVVQVSGELSNGGQPMRRFTQTFVLAAQSPK 143
++ + ++ + + +VS S+ P++ AA +P
Sbjct: 86 AQLQDSLKDLKAR--MQEAMTQEVSDVFSDTTTPIKLLAV----AATAPS 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.400
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 649,866
Number of extensions: 27551
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 28
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)