BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6107
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K44|A Chain A, Solution Structure Of A K+-Channel Voltage-Sensor Paddle
Domain
Length = 28
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 32 PSFVSIYLDRTWIGLRFLRALRLMTVPD 59
P FVS+YL+R+W+GLRFLRALRL+ +
Sbjct: 1 PVFVSVYLNRSWLGLRFLRALRLIQFSE 28
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIG-LRFLRALRLMTVPDILQ 62
+ +RF A K F + + +D I P +V+I+L + L+F R++ + I++
Sbjct: 256 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR 315
Query: 63 YLNILKTSSSIRLAQLVS----------------IFISVWLTAAGIIHLLENSGDPFEFN 106
L I K S + Q++ +FI V L ++ + + D
Sbjct: 316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD----- 370
Query: 107 NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
Q S ++ +V+M+TVGYGD+ TI G+
Sbjct: 371 -SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIG-LRFLRALRLMTVPDILQ 62
+ +RF A K F + + +D I P +V+I+L + L+F R++ + I++
Sbjct: 256 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR 315
Query: 63 YLNILKTSSSIRLAQLVS----------------IFISVWLTAAGIIHLLENSGDPFEFN 106
L I K S + Q++ +FI V L ++ + + D
Sbjct: 316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD----- 370
Query: 107 NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
Q S ++ +V+M+TVGYGD+ TI G+
Sbjct: 371 -SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ ++T +TVGYGD+Y
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVITATTVGYGDLY 61
Query: 134 CQTILGR 140
T+ GR
Sbjct: 62 PVTLWGR 68
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 33 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 88
Query: 134 CQTILGR 140
T+ GR
Sbjct: 89 PVTLWGR 95
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 34 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVATATTVGYGDLY 89
Query: 134 CQTILGR 140
T+ GR
Sbjct: 90 PVTLWGR 96
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 61
Query: 134 CQTILGR 140
T+ GR
Sbjct: 62 PVTLWGR 68
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVATATTVGYGDLY 61
Query: 134 CQTILGR 140
T+ GR
Sbjct: 62 PVTLWGR 68
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVATATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 27/158 (17%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLD-----------RTWIGLRFLRAL 52
+ +RF A K F + + +D I P F+++ + + + L LR +
Sbjct: 237 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVI 296
Query: 53 RLMTVPDI---------LQYLNILKTSSSIRLAQLVS-IFISVWLTAAGIIHLLENSGDP 102
RL+ V I LQ L +S L L+ +FI V L ++ + + E
Sbjct: 297 RLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAV-YFAEADERD 355
Query: 103 FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
+F + +W +V+M+TVGYGD+ TI G+
Sbjct: 356 SQFPSIPDAFWWA-----VVSMTTVGYGDMVPTTIGGK 388
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 27/158 (17%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLD-----------RTWIGLRFLRAL 52
+ +RF A K F + + +D I P F+++ + + + L LR +
Sbjct: 237 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVI 296
Query: 53 RLMTVPDI---------LQYLNILKTSSSIRLAQLVS-IFISVWLTAAGIIHLLENSGDP 102
RL+ V I LQ L +S L L+ +FI V L ++ + + E
Sbjct: 297 RLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAV-YFAEADERD 355
Query: 103 FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
+F + +W +V+M+TVGYGD+ TI G+
Sbjct: 356 SQFPSIPDAFWWA-----VVSMTTVGYGDMVPTTIGGK 388
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVSTATTVGYGDLY 61
Query: 134 CQTILGR 140
T+ GR
Sbjct: 62 PVTLWGR 68
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 5 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 60
Query: 134 CQTILGR 140
T+ GR
Sbjct: 61 PVTLWGR 67
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 61
Query: 134 CQTILGR 140
T+ GR
Sbjct: 62 PVTLWGR 68
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVQTATTVGYGDLY 61
Query: 134 CQTILGR 140
T+ GR
Sbjct: 62 PVTLWGR 68
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 102 PFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
P F P+ +Y +++ IVT +TVGYGD+ T +GR
Sbjct: 33 PMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGR 71
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 7 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 62
Query: 134 CQTILGR 140
T+ GR
Sbjct: 63 PVTLWGR 69
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 94 HLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
+++E P +F + Q +W +VT+ST GYGD Q+ GR
Sbjct: 148 YVIERDIQPEKFGSIPQAMWWA-----VVTLSTTGYGDTIPQSFAGR 189
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLACLAERGAP----GAQLITYPRALWWSVETATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVHTATTVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P +SY +++ + T +TVGYGD+Y
Sbjct: 50 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLY 105
Query: 134 CQTILGR 140
T+ GR
Sbjct: 106 PVTLWGR 112
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 80 SIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILG 139
++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+Y T+ G
Sbjct: 33 TVLLVIVLLAGSYLAVLAERGAP----GAQLITYPAALWWSVETATTVGYGDLYPVTLWG 88
Query: 140 R 140
R
Sbjct: 89 R 89
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T + VGYGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATCVGYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 54 LMTVPDILQYLNILKTSSS-IRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF 105
++T L+Y ++ + S + R Q VS+ + WLT ++ DPFEF
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEF 151
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGR 140
+YF +VT++TVGYGD QT G+
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGK 60
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLC 61
Query: 134 CQTILGR 140
T+ GR
Sbjct: 62 PVTLWGR 68
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ + T +TVGYGD+
Sbjct: 5 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLC 60
Query: 134 CQTILGR 140
T+ GR
Sbjct: 61 PVTLWGR 67
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 118 YFLIVTMSTVGYGDVYCQTI 137
+F + T++TVGYGD++ QT+
Sbjct: 102 FFSVETLATVGYGDMHPQTV 121
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 118 YFLIVTMSTVGYGDVYCQTI 137
+F + T++TVGYGD++ QT+
Sbjct: 102 FFSVETLATVGYGDMHPQTV 121
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
+SY +++ + T +TVGYGD Y T GR
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGR 68
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
R A ++ + + L A + +L G P Q ++Y +++ T +TV YGD+Y
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVXYGDLY 82
Query: 134 CQTILGR 140
T+ GR
Sbjct: 83 PVTLWGR 89
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGR 140
+YF +VT++TVG+GD QT G+
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGK 60
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGR 140
++F +VT++TVGYGD QT G+
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGK 60
>pdb|2LCH|A Chain A, Solution Nmr Structure Of A Protein With A Redesigned
Hydrophobic Core, Northeast Structural Genomics
Consortium Target Or38
pdb|3U3B|A Chain A, Crystal Structure Of Computationally Redesigned Four-Helix
Bundle
pdb|3U3B|B Chain B, Crystal Structure Of Computationally Redesigned Four-Helix
Bundle
Length = 113
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 94 HLLENSGDPFEF--NNPQQLSYWTCVYFLIVTMSTV 127
L++N D + NP+ + YW +Y L+ TM +
Sbjct: 17 ELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEI 52
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGR 140
+YF +VT++TVGYG+ QT G+
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGK 60
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 104 EFNNPQQ--LSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
E+ +P S + +++ +VT +TVGYGDV T +G+
Sbjct: 167 EYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGK 205
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGR 140
+YF +VT++TVGYG+ QT G+
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGK 60
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 118 YFLIVTMSTVGYGDVYCQTI 137
+F + T++TVGYGD++ QT+
Sbjct: 84 FFSVETLATVGYGDMHPQTV 103
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 104 EFNNPQQ--LSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
E+ +P S + +++ +VT +TVGYGDV T +G+
Sbjct: 155 EYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGK 193
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGR 140
++F +VT++TVGYGD QT G+
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGK 60
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 112 SYWTCVYFLIVTMSTVGYGD 131
S +YF+IVT++TVG+GD
Sbjct: 224 SKLEAIYFVIVTLTTVGFGD 243
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGR 140
+YF +VT++TVG GD QT G+
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGK 60
>pdb|4DMR|A Chain A, Reduced Dmso Reductase From Rhodobacter Capsulatus With
Bound Dmso Substrate
Length = 823
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 14/43 (32%)
Query: 86 WLTAAG--------IIHLLENSGDPFEFNNPQ------QLSYW 114
WL A+G ++ +LEN G F+FN + +++YW
Sbjct: 430 WLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYW 472
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 14/43 (32%)
Query: 86 WLTAAG--------IIHLLENSGDPFEFNNPQ------QLSYW 114
WL A+G ++ +LEN G F+FN + +++YW
Sbjct: 430 WLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYW 472
>pdb|1DMS|A Chain A, Structure Of Dmso Reductase
Length = 781
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 14/43 (32%)
Query: 86 WLTAAG--------IIHLLENSGDPFEFNNPQ------QLSYW 114
WL A+G ++ +LEN G F+FN + +++YW
Sbjct: 388 WLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYW 430
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 14/43 (32%)
Query: 86 WLTAAG--------IIHLLENSGDPFEFNNPQ------QLSYW 114
WL A+G ++ +LEN G F+FN + +++YW
Sbjct: 430 WLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYW 472
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 14/43 (32%)
Query: 86 WLTAAG--------IIHLLENSGDPFEFNNPQ------QLSYW 114
WL A+G ++ +LEN G F+FN + +++YW
Sbjct: 430 WLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYW 472
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 48 FLRALRLMTVPDILQYLNILKTSSS 72
+ +++ + V D+LQ++N++KTS S
Sbjct: 19 YFQSMPAIRVADLLQHINLMKTSDS 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.332 0.145 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,221,807
Number of Sequences: 62578
Number of extensions: 144048
Number of successful extensions: 271
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 65
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.7 bits)