Query psy6107
Match_columns 161
No_of_seqs 136 out of 1593
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:46:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3713|consensus 100.0 7.2E-37 1.6E-41 247.3 13.7 153 2-159 255-424 (477)
2 KOG1545|consensus 100.0 2.8E-32 6E-37 213.5 8.7 152 2-158 268-439 (507)
3 KOG4390|consensus 99.9 3.7E-28 8.1E-33 192.2 -0.4 152 2-158 242-402 (632)
4 KOG1419|consensus 99.9 6.3E-27 1.4E-31 191.1 4.6 156 2-158 140-315 (654)
5 PLN03192 Voltage-dependent pot 99.9 5.7E-25 1.2E-29 193.5 12.3 156 2-158 107-296 (823)
6 KOG1420|consensus 99.9 9.1E-26 2E-30 185.8 2.5 154 2-155 177-331 (1103)
7 KOG0498|consensus 99.8 2.6E-20 5.7E-25 159.4 12.4 144 14-158 158-340 (727)
8 KOG0501|consensus 99.8 1.9E-19 4.1E-24 148.8 11.9 141 14-155 289-466 (971)
9 PF07885 Ion_trans_2: Ion chan 99.6 6.1E-16 1.3E-20 99.2 5.9 65 86-158 6-70 (79)
10 PF00520 Ion_trans: Ion transp 99.6 1.4E-15 2.9E-20 111.5 8.2 156 2-157 12-196 (200)
11 PRK10537 voltage-gated potassi 99.6 4.8E-14 1E-18 115.0 11.4 130 14-157 83-213 (393)
12 KOG0500|consensus 99.5 6.4E-13 1.4E-17 108.4 10.7 140 14-157 68-227 (536)
13 KOG0499|consensus 99.3 1.1E-11 2.3E-16 103.4 9.3 143 14-158 301-448 (815)
14 KOG1418|consensus 98.9 1.6E-09 3.5E-14 88.2 3.3 49 109-157 112-160 (433)
15 KOG3684|consensus 98.8 2.4E-08 5.1E-13 81.4 8.9 72 82-157 261-332 (489)
16 KOG4404|consensus 98.8 9.9E-09 2.1E-13 80.4 5.1 45 111-155 185-237 (350)
17 PF01007 IRK: Inward rectifier 98.7 7E-08 1.5E-12 77.4 8.0 81 77-157 40-131 (336)
18 KOG3193|consensus 98.6 1.2E-07 2.5E-12 79.4 6.7 45 111-155 216-260 (1087)
19 KOG4404|consensus 98.5 8E-08 1.7E-12 75.4 3.9 44 109-152 77-120 (350)
20 KOG1418|consensus 98.0 1E-06 2.2E-11 71.7 -0.4 48 111-158 241-296 (433)
21 KOG2301|consensus 97.4 0.0015 3.3E-08 61.6 10.0 65 3-69 489-553 (1592)
22 KOG3827|consensus 97.3 0.0015 3.2E-08 52.9 7.6 83 72-156 61-158 (400)
23 PLN03223 Polycystin cation cha 97.0 0.012 2.5E-07 54.6 11.3 20 13-32 1206-1225(1634)
24 KOG2302|consensus 96.7 0.012 2.6E-07 53.2 9.1 57 13-69 1185-1242(1956)
25 PF08016 PKD_channel: Polycyst 96.7 0.035 7.6E-07 46.1 11.1 21 13-33 235-255 (425)
26 KOG2301|consensus 96.6 0.011 2.3E-07 56.2 8.1 62 2-64 887-949 (1592)
27 KOG2302|consensus 96.3 0.0025 5.4E-08 57.4 2.1 115 13-128 676-799 (1956)
28 TIGR00870 trp transient-recept 94.8 0.68 1.5E-05 41.2 12.1 17 14-30 415-431 (743)
29 PF00060 Lig_chan: Ligand-gate 94.0 0.047 1E-06 38.0 2.6 44 111-155 43-86 (148)
30 KOG3599|consensus 93.3 2.7 5.9E-05 38.0 12.6 23 14-36 492-514 (798)
31 TIGR00933 2a38 potassium uptak 92.3 0.46 1E-05 39.1 6.3 43 111-153 230-274 (390)
32 PRK05482 potassium-transportin 87.8 2.5 5.4E-05 36.5 7.1 41 110-150 449-491 (559)
33 PF02386 TrkH: Cation transpor 85.6 3.1 6.7E-05 33.7 6.4 38 113-150 295-338 (354)
34 PF07077 DUF1345: Protein of u 84.2 3.8 8.3E-05 30.1 5.8 51 105-155 125-175 (180)
35 KOG3609|consensus 80.5 15 0.00032 33.2 8.8 21 13-33 409-429 (822)
36 PF02386 TrkH: Cation transpor 80.0 4.1 8.9E-05 33.0 5.0 50 104-153 168-219 (354)
37 PRK05482 potassium-transportin 78.7 4.8 0.0001 34.8 5.2 67 84-150 290-368 (559)
38 COG0168 TrkG Trk-type K+ trans 77.7 13 0.00029 31.8 7.6 39 112-150 424-470 (499)
39 TIGR00933 2a38 potassium uptak 75.6 13 0.00029 30.5 6.9 44 111-154 127-176 (390)
40 PRK10750 potassium transporter 73.6 7.8 0.00017 33.0 5.1 43 111-153 303-347 (483)
41 KOG3676|consensus 73.6 15 0.00032 33.1 6.9 70 80-150 548-631 (782)
42 PRK10750 potassium transporter 73.2 46 0.001 28.4 9.6 38 113-150 422-465 (483)
43 KOG3713|consensus 70.4 22 0.00048 30.2 6.9 27 50-76 308-334 (477)
44 KOG1052|consensus 70.2 8.8 0.00019 33.6 4.9 68 86-154 352-422 (656)
45 KOG1054|consensus 67.9 3.7 8E-05 35.8 2.0 43 111-154 594-636 (897)
46 TIGR00934 2a38euk potassium up 67.6 18 0.0004 32.7 6.2 74 84-160 593-669 (800)
47 COG1226 Kch Kef-type K+ transp 65.5 2.5 5.4E-05 30.1 0.5 42 111-152 116-157 (212)
48 KOG4440|consensus 58.8 34 0.00074 30.4 6.1 69 87-155 581-656 (993)
49 KOG1545|consensus 53.5 97 0.0021 25.8 7.5 29 48-76 322-350 (507)
50 TIGR00934 2a38euk potassium up 42.3 1.1E+02 0.0024 27.9 6.9 40 111-150 736-784 (800)
51 PLN03223 Polycystin cation cha 41.5 1.1E+02 0.0024 29.9 6.9 51 48-98 1300-1353(1634)
52 KOG0501|consensus 33.8 3.4E+02 0.0075 24.3 8.2 77 47-124 322-399 (971)
53 KOG1053|consensus 27.3 2.6E+02 0.0055 26.4 6.6 23 133-155 630-652 (1258)
54 KOG0500|consensus 26.7 2.3E+02 0.005 24.5 5.9 22 51-72 99-120 (536)
55 COG1615 Uncharacterized conser 24.1 54 0.0012 29.6 1.9 34 122-155 220-253 (885)
56 PF08254 Leader_Thr: Threonine 24.1 26 0.00057 16.2 0.0 10 121-130 11-20 (22)
57 PF11391 DUF2798: Protein of u 23.6 27 0.00058 20.6 0.0 38 121-158 14-51 (60)
58 PF00959 Phage_lysozyme: Phage 22.3 44 0.00095 21.9 0.9 12 126-137 3-15 (110)
No 1
>KOG3713|consensus
Probab=100.00 E-value=7.2e-37 Score=247.28 Aligned_cols=153 Identities=26% Similarity=0.464 Sum_probs=120.5
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhch-----------hhHHHHHHHHHHHHHHHHHH---HHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTW-----------IGLRFLRALRLMTVPDILQY---LNIL 67 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~-----------~~~~~lr~lRl~rl~r~~~~---~~~l 67 (161)
+||++|+..+|+|.+|+|++.|+||+++++|||+++...... ..+|++|++|++|++|+.|. ++.+
T Consensus 255 ~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~l 334 (477)
T KOG3713|consen 255 FEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTL 334 (477)
T ss_pred HHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 699999999999999999999999999999999987543211 12344444444444444443 3443
Q ss_pred HH--hHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHH
Q psy6107 68 KT--SSSIRLAQLVSIFISV-WLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLV 144 (161)
Q Consensus 68 ~~--~~~~~~~~l~~~~~~~-~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~ 144 (161)
.. +.+.+...++.+++++ +.++|.+.|++|++.+.+.|+++|. ++||+++|||||||||++|+|..||+++.
T Consensus 335 g~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa-----~~WWaiVTMTTVGYGDm~P~T~~Gklvas 409 (477)
T KOG3713|consen 335 GLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPA-----GFWWAVVTMTTVGYGDMVPVTVLGKLVAS 409 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc-----hhheeeEEEeeecccCccccccchHHHHH
Confidence 33 2344455555555555 5689999999999998888999883 77899999999999999999999999999
Q ss_pred HHHHHhhhhcccccc
Q psy6107 145 FFLLVGLVSDPFPLF 159 (161)
Q Consensus 145 ~~~l~g~~~~a~~i~ 159 (161)
.+++.|++++|+||.
T Consensus 410 ~cil~GVLvlAlPIt 424 (477)
T KOG3713|consen 410 LCILCGVLVLALPIT 424 (477)
T ss_pred HHHHHhHHHhhcchH
Confidence 999999999999984
No 2
>KOG1545|consensus
Probab=99.97 E-value=2.8e-32 Score=213.46 Aligned_cols=152 Identities=25% Similarity=0.436 Sum_probs=123.9
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhh-----------chhhHHHHHHHHHHHHHHHHHH------H
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDR-----------TWIGLRFLRALRLMTVPDILQY------L 64 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~-----------~~~~~~~lr~lRl~rl~r~~~~------~ 64 (161)
+|+++|+++||+|-.|+++-.|+||+++++|+++.+.... +..++.++|++|+.|++|++|+ +
T Consensus 268 fEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGL 347 (507)
T KOG1545|consen 268 FELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGL 347 (507)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchH
Confidence 6899999999999999999999999999999999876431 1224666666666666666654 4
Q ss_pred HHHHH--hHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhH
Q psy6107 65 NILKT--SSSIRLAQLVSIFISV-WLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRT 141 (161)
Q Consensus 65 ~~l~~--~~~~~~~~l~~~~~~~-~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri 141 (161)
+.+.+ +.+++...+++.++.+ +++++..+|+.|.+.+...|++++ ||+||+++|||||||||++|.|..||+
T Consensus 348 QILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIP-----daFWwavVTMTTVGYGDm~P~TvgGKI 422 (507)
T KOG1545|consen 348 QILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIP-----DAFWWAVVTMTTVGYGDMVPVTVGGKI 422 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCc-----ccceEEEEEEEeeccccceecccCcee
Confidence 44444 3355555666655555 457899999999998888888776 689999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccc
Q psy6107 142 FLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 142 ~~~~~~l~g~~~~a~~i 158 (161)
+..++.+.|++.+|+|+
T Consensus 423 VGslCAiaGVLTiALPV 439 (507)
T KOG1545|consen 423 VGSLCAIAGVLTIALPV 439 (507)
T ss_pred hhhHHhhhhheEecccc
Confidence 99999999999999985
No 3
>KOG4390|consensus
Probab=99.93 E-value=3.7e-28 Score=192.22 Aligned_cols=152 Identities=25% Similarity=0.439 Sum_probs=130.2
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH---
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT------WIGLRFLRALRLMTVPDILQYLNILKTSSS--- 72 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~------~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~--- 72 (161)
.||++|+++||++-+|+++-.+++|.++++|+|+.+....+ ...+|++|++|+++.-|..+.+|.+....+
T Consensus 242 ~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCA 321 (632)
T KOG4390|consen 242 GEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCA 321 (632)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHHHHH
Confidence 48999999999999999999999999999999998876544 234788888888888888888888776433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhh
Q psy6107 73 IRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152 (161)
Q Consensus 73 ~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~ 152 (161)
.++..+++.....++++|.++|+.|++.+...|++++ .|+|++++||||.||||++|.|.+||++..++.+.|++
T Consensus 322 SELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIP-----aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVL 396 (632)
T KOG4390|consen 322 SELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIP-----AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVL 396 (632)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCc-----HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceE
Confidence 3455555555555678999999999999999999887 48889999999999999999999999999999999999
Q ss_pred hccccc
Q psy6107 153 SDPFPL 158 (161)
Q Consensus 153 ~~a~~i 158 (161)
++|+|+
T Consensus 397 VIALPV 402 (632)
T KOG4390|consen 397 VIALPV 402 (632)
T ss_pred EEeccc
Confidence 999985
No 4
>KOG1419|consensus
Probab=99.93 E-value=6.3e-27 Score=191.15 Aligned_cols=156 Identities=24% Similarity=0.332 Sum_probs=124.1
Q ss_pred ceehhhHhcccc---------hhhhhcchhhHHHHHhhhhHHHHHHhh--------hchhhHHHHHHHHHHHHHHHHHHH
Q psy6107 2 VYYFIRFIAASD---------KLWFMLEMYSFVDYFTIPPSFVSIYLD--------RTWIGLRFLRALRLMTVPDILQYL 64 (161)
Q Consensus 2 ~e~~~r~~~a~~---------~~~y~~~~~~iiDl~~~~P~~~~~~~~--------~~~~~~~~lr~lRl~rl~r~~~~~ 64 (161)
.||++|+|+|.+ |++|.++|..+||++.++.....+... ++..++|++.++|++|+.|-...+
T Consensus 140 ~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTW 219 (654)
T KOG1419|consen 140 LEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTW 219 (654)
T ss_pred HHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchh
Confidence 599999999984 688999999999999877654443332 224568888888888888888788
Q ss_pred HHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhH
Q psy6107 65 NILKTS---SSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRT 141 (161)
Q Consensus 65 ~~l~~~---~~~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri 141 (161)
+.+... .+.++.....+-+..++..+.+.|..|++.+++ .+|....+|.||+||+++|+|||||||.+|+|+.||+
T Consensus 220 KLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e-~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~ 298 (654)
T KOG1419|consen 220 KLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGE-GTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRL 298 (654)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccccchhHHHHHHhhheeEEeeccCCcCcccchhHH
Confidence 887763 344444443444444557788899999986653 4455567999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccc
Q psy6107 142 FLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 142 ~~~~~~l~g~~~~a~~i 158 (161)
++.++.++|+.+||.|.
T Consensus 299 laa~fsligiSFFALPA 315 (654)
T KOG1419|consen 299 LAACFSLIGISFFALPA 315 (654)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999999985
No 5
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=5.7e-25 Score=193.50 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=113.3
Q ss_pred ceehhhHhccc--------------chhhhhcchhhHHHHHhhhhHHHHHHh-hhc---hhhHHHHHHHHHHHHHHHHHH
Q psy6107 2 VYYFIRFIAAS--------------DKLWFMLEMYSFVDYFTIPPSFVSIYL-DRT---WIGLRFLRALRLMTVPDILQY 63 (161)
Q Consensus 2 ~e~~~r~~~a~--------------~~~~y~~~~~~iiDl~~~~P~~~~~~~-~~~---~~~~~~lr~lRl~rl~r~~~~ 63 (161)
+|+++|++.+- -.++|+++ |+++|+++++|+.+.... .+. ...++++|++|++|+.|+.+.
T Consensus 107 iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~ 185 (823)
T PLN03192 107 VDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQL 185 (823)
T ss_pred HHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 57888888871 25789877 789999999999765432 222 224677778888888777777
Q ss_pred HHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCC-CC--------CcccchhhhhHhhhhhheecc
Q psy6107 64 LNILKTSSS-----IRLAQLVSIFISVWLTAAGIIHLLENSG--DPFE-FN--------NPQQLSYWTCVYFLIVTMSTV 127 (161)
Q Consensus 64 ~~~l~~~~~-----~~~~~l~~~~~~~~~~~a~~~~~~e~~~--~~~~-~~--------~~~~~~~~~slyf~~~TltTv 127 (161)
.+.+++... .++..++...+.+.+++||++|.+.... ++.+ .+ .....+|..|+||+++|||||
T Consensus 186 ~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTV 265 (823)
T PLN03192 186 FTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTV 265 (823)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhc
Confidence 766654322 2344555555566677889888875321 1111 11 111257999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 128 GYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 128 GYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
||||++|+|+.||++++++|++|++++|+.|
T Consensus 266 GYGDi~p~t~~E~i~~i~~ml~g~~~~a~~i 296 (823)
T PLN03192 266 GYGDLHAVNTIEMIFIIFYMLFNLGLTAYLI 296 (823)
T ss_pred cCCCcCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 6
>KOG1420|consensus
Probab=99.91 E-value=9.1e-26 Score=185.80 Aligned_cols=154 Identities=82% Similarity=1.397 Sum_probs=146.6
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSI 81 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~~~l~~~ 81 (161)
+-|.+|+.+|.+|..|+...+.++|..++.|.++.+....+|.++|++|.+|+..+..++++++.++++.+.++..++.+
T Consensus 177 vyffirfiaasdklwf~lemys~vdfftippsfvsiyl~r~wlglrflralrlmtvpdilqylnilktsssirl~qlvsi 256 (1103)
T KOG1420|consen 177 VYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRALRLMTVPDILQYLNILKTSSSIRLVQLVSI 256 (1103)
T ss_pred HHHHHHHhhcccceeeeeehhhheeeeecCchheEEEeccchHHHHHHHHHHhccHHHHHHHHHHHhccchhhHHHHHHH
Confidence 34678999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC-CCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107 82 FISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 82 ~~~~~~~~a~~~~~~e~~~~~~~-~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
++..++..|+..+.+|+.++|+. |.|....+|++++||.++||+||||||++..|..||++.+++++.|..+||
T Consensus 257 fisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfa 331 (1103)
T KOG1420|consen 257 FISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFA 331 (1103)
T ss_pred HHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 877777899999999999999999999999999999999999999999987
No 7
>KOG0498|consensus
Probab=99.84 E-value=2.6e-20 Score=159.39 Aligned_cols=144 Identities=21% Similarity=0.271 Sum_probs=106.8
Q ss_pred hhhhhcchhhHHHHHhhhhHHHHHHhhh---------chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHH
Q psy6107 14 KLWFMLEMYSFVDYFTIPPSFVSIYLDR---------TWIGLRFLRALRLMTVPDILQYLNILKTSSSIR-------LAQ 77 (161)
Q Consensus 14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~---------~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~-------~~~ 77 (161)
.++|+++ |+++|+++++|+........ .....+++.+.|++|+.|+.++++.+.+..... .+.
T Consensus 158 A~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ 236 (727)
T KOG0498|consen 158 AKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAAL 236 (727)
T ss_pred HHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4799997 89999999999987655321 223467788888888888888887776644332 224
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCC------CCCCC------cc-----------cchhhhhHhhhhhheeccccccccc
Q psy6107 78 LVSIFISVWLTAAGIIHLLENSGDP------FEFNN------PQ-----------QLSYWTCVYFLIVTMSTVGYGDVYC 134 (161)
Q Consensus 78 l~~~~~~~~~~~a~~~~~~e~~~~~------~~~~~------~~-----------~~~~~~slyf~~~TltTvGYGDi~P 134 (161)
++++++.+.++.||++|.+....++ ++..+ .+ ..+|..|+||+++||||+||||.+|
T Consensus 237 ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s 316 (727)
T KOG0498|consen 237 LLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHA 316 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCC
Confidence 4555666667788888877332211 11110 00 1579999999999999999999999
Q ss_pred cccchhHHHHHHHHHhhhhccccc
Q psy6107 135 QTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 135 ~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
.++.|++++++.|++|.+++|+.|
T Consensus 317 ~~~~E~iFsi~~mi~GllL~A~lI 340 (727)
T KOG0498|consen 317 NNMGEKIFSIFIMLFGLLLFAYLI 340 (727)
T ss_pred CCcHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999865
No 8
>KOG0501|consensus
Probab=99.81 E-value=1.9e-19 Score=148.80 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=107.4
Q ss_pred hhhhhcchhhHHHHHhhhhHHHHHHhhhch----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6107 14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTW----IGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTA 89 (161)
Q Consensus 14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~----~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 89 (161)
|.+|+|+ |++||+++++|+.+.-.+.... ..+..+++.|++|+.|+.|.++..-+.....+..+++.+..+-...
T Consensus 289 RmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWl 367 (971)
T KOG0501|consen 289 RMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWL 367 (971)
T ss_pred hHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6799999 7999999999999887776543 3467788888888888887776544444444555556666666678
Q ss_pred HHHHHhhhcC---------CCCC------------------------CCCCcccchhhhhHhhhhhheeccccccccccc
Q psy6107 90 AGIIHLLENS---------GDPF------------------------EFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQT 136 (161)
Q Consensus 90 a~~~~~~e~~---------~~~~------------------------~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t 136 (161)
||+||.+... .+++ ..+.+..+.|..|+||+++.|||||||++.|.|
T Consensus 368 ACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~T 447 (971)
T KOG0501|consen 368 ACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNT 447 (971)
T ss_pred HHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCc
Confidence 9999877431 0000 011122378999999999999999999999999
Q ss_pred cchhHHHHHHHHHhhhhcc
Q psy6107 137 ILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 137 ~~~ri~~~~~~l~g~~~~a 155 (161)
+.||++++++|++|..++|
T Consensus 448 D~EKiF~v~mMii~aLLYA 466 (971)
T KOG0501|consen 448 DNEKIFGVCMMIIGALLYA 466 (971)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887
No 9
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.63 E-value=6.1e-16 Score=99.19 Aligned_cols=65 Identities=32% Similarity=0.600 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 86 WLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 86 ~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
++..++.++..+++ .+..++.||+||+++|+||+||||+.|+++.||+++++.++.|+.++++-+
T Consensus 6 ~l~~~~~~~~~~~~--------~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~ 70 (79)
T PF07885_consen 6 VLAFGAIFFYISEG--------SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFL 70 (79)
T ss_dssp HHHHHHHHHHHTTS--------SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHh--------cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 34556666555221 113699999999999999999999999999999999999999999987643
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.62 E-value=1.4e-15 Score=111.48 Aligned_cols=156 Identities=24% Similarity=0.348 Sum_probs=97.0
Q ss_pred ceehhhHhcccc-hhhhhcchhhHHHHHhhhhHHHHHHhhhch-----hhHHHHHHHHHHHHHHHHHHHHHHHH---h--
Q psy6107 2 VYYFIRFIAASD-KLWFMLEMYSFVDYFTIPPSFVSIYLDRTW-----IGLRFLRALRLMTVPDILQYLNILKT---S-- 70 (161)
Q Consensus 2 ~e~~~r~~~a~~-~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~-----~~~~~lr~lRl~rl~r~~~~~~~l~~---~-- 70 (161)
+|.++|++..+. +++|++++|+++|+++++|..+........ ...+..|++|.+|+.|+.+..+.++. .
T Consensus 12 ~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~ 91 (200)
T PF00520_consen 12 LEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALI 91 (200)
T ss_dssp HHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccccccccccccc
Confidence 588899998886 499999999999999999986665433211 12455555555555555544332222 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----------CCCCCcccchhhhhHhhhhhheecccccccccc---
Q psy6107 71 -SSIRLAQLVSIFISVWLTAAGIIHLLENSGDP-----------FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQ--- 135 (161)
Q Consensus 71 -~~~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~-----------~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~--- 135 (161)
...+......+.....+.+|+..+..-++.+. +.......++|..|+||+..++||.|+||..|.
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~ 171 (200)
T PF00520_consen 92 RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMS 171 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHH
T ss_pred cccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCCcccccccccc
Confidence 11222333333334444566665555333221 111222337899999999999999999999998
Q ss_pred --ccchhHHH-HHHHHHhhhhcccc
Q psy6107 136 --TILGRTFL-VFFLLVGLVSDPFP 157 (161)
Q Consensus 136 --t~~~ri~~-~~~~l~g~~~~a~~ 157 (161)
+..+.++. ....+.++.++++.
T Consensus 172 ~~~~~~~~~~~~~~~i~~~~l~nll 196 (200)
T PF00520_consen 172 ARSWLAVIFFISFIIIVSILLLNLL 196 (200)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHhhhhhhhHHHHHHHHH
Confidence 78889888 44555555665543
No 11
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.55 E-value=4.8e-14 Score=114.99 Aligned_cols=130 Identities=25% Similarity=0.316 Sum_probs=79.0
Q ss_pred hhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Q psy6107 14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGI- 92 (161)
Q Consensus 14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~a~~- 92 (161)
|..|+.+..-++|.++.. .. .....+.++.+-++++..+....+...+...........+.+...+..+..
T Consensus 83 r~~w~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~g 154 (393)
T PRK10537 83 RLAWAISILLLLAALAIT-------LH-FYPWLKFLIGYCIVLLVALLIYRRDFDRSSLAAGTLFAVISITSLLFYSTFG 154 (393)
T ss_pred HHHHHHHHHHHHHHHHHh-------cc-cccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666554444444432 01 112244555555666666666666555542221111112222223334433
Q ss_pred HHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107 93 IHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP 157 (161)
Q Consensus 93 ~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~ 157 (161)
.++.|.+.+| +..++.||+||+++|+||+||||+.|.|+.||++++.+++.|+++++..
T Consensus 155 ~~~~~~~f~~------~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~ 213 (393)
T PRK10537 155 ALYLGDGFSP------PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATS 213 (393)
T ss_pred HHHHccccCc------CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555542221 2358999999999999999999999999999999999999999988654
No 12
>KOG0500|consensus
Probab=99.45 E-value=6.4e-13 Score=108.43 Aligned_cols=140 Identities=15% Similarity=0.233 Sum_probs=100.0
Q ss_pred hhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHH
Q psy6107 14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKT----SSSIRLAQLVSIFISVWLTA 89 (161)
Q Consensus 14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~----~~~~~~~~l~~~~~~~~~~~ 89 (161)
+++|+.|..+.+|++|++|.+...+..+.....|+.|++| +.|+.....+-++ ....++..+....+.+.+..
T Consensus 68 ~~hY~~s~~f~lD~l~liP~D~l~~~~~~~~~~r~nRllk---~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWN 144 (536)
T KOG0500|consen 68 RKHYVHSTQFKLDVLSLIPLDLLLFKDGSASLERLNRLLK---IYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWN 144 (536)
T ss_pred HHHHHHhhhhhhhhhhhcchhHHhhcCCcchHHHHHHHHH---HHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999888776654445444444 4444444443332 22445666666666677788
Q ss_pred HHHHHhhhcCCC----CCCCCCc------------ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhh
Q psy6107 90 AGIIHLLENSGD----PFEFNNP------------QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVS 153 (161)
Q Consensus 90 a~~~~~~e~~~~----~~~~~~~------------~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~ 153 (161)
||++|.+....+ .+..++. -..+|.-|+||+.-|+||+| -.-.|.|+.+-.+.++--++|+.+
T Consensus 145 aClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvli 223 (536)
T KOG0500|consen 145 ACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLI 223 (536)
T ss_pred hHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHH
Confidence 999888744321 1111100 11679999999999999999 456899999999999999999999
Q ss_pred cccc
Q psy6107 154 DPFP 157 (161)
Q Consensus 154 ~a~~ 157 (161)
||-.
T Consensus 224 FAtI 227 (536)
T KOG0500|consen 224 FATI 227 (536)
T ss_pred Hhhh
Confidence 9854
No 13
>KOG0499|consensus
Probab=99.31 E-value=1.1e-11 Score=103.37 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=107.6
Q ss_pred hhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q psy6107 14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTS-SSIRLAQLVSIFISVWLTAAGI 92 (161)
Q Consensus 14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~a~~ 92 (161)
+++|+++-.+-+|++|++|+.+..++-+.....|+.|+++.--.+.+.+.++.+-.+ ...+........+.++++.||+
T Consensus 301 rk~Yl~sr~FklDllsiLPldllY~~~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacv 380 (815)
T KOG0499|consen 301 RKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACV 380 (815)
T ss_pred HHHHHHhhhhhhhHHhhhhHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHH
Confidence 689999999999999999999887766655455665555555555555555433322 2335555556666777888999
Q ss_pred HHhhhcC----CCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 93 IHLLENS----GDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 93 ~~~~e~~----~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+|....- .+-+.+++.+ ..|..++||++-|++|+| |.-.|+|..|.++..+--++|+.+||..|
T Consensus 381 YY~~SayqglG~~rWVydg~G-n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslli 448 (815)
T KOG0499|consen 381 YYWASAYQGLGTTRWVYDGEG-NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLI 448 (815)
T ss_pred HHHHHhhcccccceeEEcCCC-CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877442 2334456666 599999999999999999 89999999999999999999999998765
No 14
>KOG1418|consensus
Probab=98.85 E-value=1.6e-09 Score=88.17 Aligned_cols=49 Identities=33% Similarity=0.563 Sum_probs=44.8
Q ss_pred ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107 109 QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP 157 (161)
Q Consensus 109 ~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~ 157 (161)
..+++.+|+||+.+++||+|||+++|.|..||+++++..++|+-++.+.
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~ 160 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLI 160 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHH
Confidence 3479999999999999999999999999999999999999999776543
No 15
>KOG3684|consensus
Probab=98.82 E-value=2.4e-08 Score=81.45 Aligned_cols=72 Identities=22% Similarity=0.461 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107 82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP 157 (161)
Q Consensus 82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~ 157 (161)
.+..|++.+...-.+|...+... ...+|.+|+|+..+|+-++||||++|.|..||.++++..++|.++-|+-
T Consensus 261 tl~~Wii~sW~~~~cER~~~~~~----~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sall 332 (489)
T KOG3684|consen 261 TLSLWIIASWMLRQCERYHDSQD----VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLL 332 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcchh----hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHH
Confidence 44456677777777787544322 3368999999999999999999999999999999999999999887654
No 16
>KOG4404|consensus
Probab=98.77 E-value=9.9e-09 Score=80.40 Aligned_cols=45 Identities=31% Similarity=0.569 Sum_probs=38.8
Q ss_pred chhhhhHhhhhhheecccccccccccc--------chhHHHHHHHHHhhhhcc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTI--------LGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~--------~~ri~~~~~~l~g~~~~a 155 (161)
++|+||+||+.+|+||||+||.++-.. .-+.++.+.+++|+++++
T Consensus 185 Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~ 237 (350)
T KOG4404|consen 185 WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIY 237 (350)
T ss_pred cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHH
Confidence 899999999999999999999987633 446788889999998875
No 17
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.70 E-value=7e-08 Score=77.42 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--cCC-CC----CCCCC--cccchhhhhHhhhhhheecccccc--ccccccchhHHHHH
Q psy6107 77 QLVSIFISVWLTAAGIIHLLE--NSG-DP----FEFNN--PQQLSYWTCVYFLIVTMSTVGYGD--VYCQTILGRTFLVF 145 (161)
Q Consensus 77 ~l~~~~~~~~~~~a~~~~~~e--~~~-~~----~~~~~--~~~~~~~~slyf~~~TltTvGYGD--i~P~t~~~ri~~~~ 145 (161)
.....++..++++|.++|.+. +++ ++ ...+. .+..++.+|++|++.|+||||||. ++|..+.+-+++.+
T Consensus 40 ~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~ 119 (336)
T PF01007_consen 40 LFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTI 119 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHH
Confidence 334556777889999988652 211 11 00100 112589999999999999999998 67888999999999
Q ss_pred HHHHhhhhcccc
Q psy6107 146 FLLVGLVSDPFP 157 (161)
Q Consensus 146 ~~l~g~~~~a~~ 157 (161)
.+++|+++.|+.
T Consensus 120 q~~~g~l~~a~~ 131 (336)
T PF01007_consen 120 QSLVGLLLDAFM 131 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887753
No 18
>KOG3193|consensus
Probab=98.59 E-value=1.2e-07 Score=79.36 Aligned_cols=45 Identities=38% Similarity=0.620 Sum_probs=40.3
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
.+.++|+||.++|++||||||.+|.-+++++..++++..+.++++
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip 260 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIP 260 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccH
Confidence 467889999999999999999999999999999888888777765
No 19
>KOG4404|consensus
Probab=98.53 E-value=8e-08 Score=75.38 Aligned_cols=44 Identities=32% Similarity=0.594 Sum_probs=40.7
Q ss_pred ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhh
Q psy6107 109 QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152 (161)
Q Consensus 109 ~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~ 152 (161)
+.+++..|+||+.+-+||||||.-.|.|+.||+++++..++|+-
T Consensus 77 ~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gip 120 (350)
T KOG4404|consen 77 PQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIP 120 (350)
T ss_pred cccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCc
Confidence 34889999999999999999999999999999999999998864
No 20
>KOG1418|consensus
Probab=98.01 E-value=1e-06 Score=71.74 Aligned_cols=48 Identities=31% Similarity=0.667 Sum_probs=42.2
Q ss_pred chhhhhHhhhhhheeccccccccccccchh--------HHHHHHHHHhhhhccccc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGR--------TFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~r--------i~~~~~~l~g~~~~a~~i 158 (161)
++|.+|+||+.+|+|||||||+.|.++.++ .....+.++|....+...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 789999999999999999999999999877 588888888887776543
No 21
>KOG2301|consensus
Probab=97.36 E-value=0.0015 Score=61.63 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=47.5
Q ss_pred eehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6107 3 YYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKT 69 (161)
Q Consensus 3 e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~ 69 (161)
|+.+.+++ .+...|+.+.+|++|.+.+. ..+..........++++|.+|++|++|+.|.+..++.
T Consensus 489 Em~~ki~a-l~~~~yF~~~~n~fD~~iv~-l~~~~~~~~~~~g~svLr~frllRIfkl~k~wp~l~~ 553 (1592)
T KOG2301|consen 489 EMILKIYA-LGPRNYFRRGWNIFDLIIVL-LSLLELLLKNVYGLSVLRSFRLLRIFKLIKSWPTLND 553 (1592)
T ss_pred HHHHHHHH-cCcHHHHhhhcchheEEEEe-hhhHHhcccchHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444443 44778888899999999988 4444344555677899999999999999988766654
No 22
>KOG3827|consensus
Probab=97.26 E-value=0.0015 Score=52.89 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=57.7
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhhhc-------CCCCCC----CCCcccchhhhhHhhhhhheeccccccccccc--
Q psy6107 72 SIRLAQLV--SIFISVWLTAAGIIHLLEN-------SGDPFE----FNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQT-- 136 (161)
Q Consensus 72 ~~~~~~l~--~~~~~~~~~~a~~~~~~e~-------~~~~~~----~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t-- 136 (161)
+++...++ ..+++-|+++|.++|.+-. +..+.+ ..+. .++..||-|++=|=||+|||--++..
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV--~sf~sAFLFSiETQtTIGYG~R~vTeeC 138 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNV--HSFTSAFLFSIETQTTIGYGFRYVTEEC 138 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeec--cchhhhheeeeeeeeeeeccccccCccC
Confidence 44444433 3466678999999997722 111111 1222 68899999999999999999877665
Q ss_pred cchhHHHHHHHHHhhhhccc
Q psy6107 137 ILGRTFLVFFLLVGLVSDPF 156 (161)
Q Consensus 137 ~~~ri~~~~~~l~g~~~~a~ 156 (161)
|.+-...++.++.|+++=|+
T Consensus 139 P~aI~ll~~Q~I~g~ii~af 158 (400)
T KOG3827|consen 139 PEAIFLLVLQSILGVIINAF 158 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999877554
No 23
>PLN03223 Polycystin cation channel protein; Provisional
Probab=96.98 E-value=0.012 Score=54.63 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.6
Q ss_pred chhhhhcchhhHHHHHhhhh
Q psy6107 13 DKLWFMLEMYSFVDYFTIPP 32 (161)
Q Consensus 13 ~~~~y~~~~~~iiDl~~~~P 32 (161)
++++|++++|||+|++.+.=
T Consensus 1206 ~~laYFKSfWNwLEIl~IlL 1225 (1634)
T PLN03223 1206 SYLAYFLSGWNYVDFASIGL 1225 (1634)
T ss_pred chhhHhccchHHHHHHHHHH
Confidence 45899999999999977554
No 24
>KOG2302|consensus
Probab=96.72 E-value=0.012 Score=53.20 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=34.9
Q ss_pred chhhhhcchhhHHHHHhhhhHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6107 13 DKLWFMLEMYSFVDYFTIPPSFVSIYLDRT-WIGLRFLRALRLMTVPDILQYLNILKT 69 (161)
Q Consensus 13 ~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~-~~~~~~lr~lRl~rl~r~~~~~~~l~~ 69 (161)
....|+++.||++|-+.+.-..+.+..... ....|++.++|++|++|-+|.+|.+..
T Consensus 1185 ge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSr 1242 (1956)
T KOG2302|consen 1185 GEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISR 1242 (1956)
T ss_pred chHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 468899999999998766554443332222 224566666666666666665555544
No 25
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=96.65 E-value=0.035 Score=46.06 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=17.5
Q ss_pred chhhhhcchhhHHHHHhhhhH
Q psy6107 13 DKLWFMLEMYSFVDYFTIPPS 33 (161)
Q Consensus 13 ~~~~y~~~~~~iiDl~~~~P~ 33 (161)
.+++|++++||++|++.++=.
T Consensus 235 ~g~~y~~~~WN~~e~~ii~ls 255 (425)
T PF08016_consen 235 EGRAYFKSFWNWLELLIILLS 255 (425)
T ss_pred hhhHHhhhcCcHHHHHHHHHH
Confidence 348999999999999987653
No 26
>KOG2301|consensus
Probab=96.55 E-value=0.011 Score=56.17 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=40.7
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT-WIGLRFLRALRLMTVPDILQYL 64 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~-~~~~~~lr~lRl~rl~r~~~~~ 64 (161)
+|.++.+.+-.-+. |+++.|+++|++.+.-..+.+..... ....|.+|.+|.+|-+|..+..
T Consensus 887 ~Em~lK~ia~Gf~~-y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~ 949 (1592)
T KOG2301|consen 887 FEMLLKWIAYGFFF-YFRNAWNWLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRF 949 (1592)
T ss_pred HHHHHHHHHhHHHH-HHhhHHhhhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 56777777776666 99999999999998887777665443 2234444444444444444433
No 27
>KOG2302|consensus
Probab=96.25 E-value=0.0025 Score=57.35 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=61.7
Q ss_pred chhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHH
Q psy6107 13 DKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSS---------SIRLAQLVSIFI 83 (161)
Q Consensus 13 ~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~---------~~~~~~l~~~~~ 83 (161)
.-.+|.++|+|+.|=++.+-...++ .+++.-++..+|-+|++|..++.|+...+++.. ......++.+++
T Consensus 676 g~f~y~rnPynifdgiiv~is~wEi-Vgqq~GglsvlrtFrllrvlkLvrf~palqrqlvvl~ktmdnvAtfctllmLfi 754 (1956)
T KOG2302|consen 676 GFFRYHRNPYNIFDGIIVAISHWEI-VGQQDGGLSVLRTFRLLRVLKLVRFSPALQRQLVVLMKTMDNVATFCTLLMLFI 754 (1956)
T ss_pred cchhccCCCcccCCCeEEEEEeeEe-ecccCCCcCCCcHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 3678999999999988766432222 333333455666666666666665555444321 111122233333
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccc
Q psy6107 84 SVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVG 128 (161)
Q Consensus 84 ~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvG 128 (161)
.+.-+.+.-.|-.....+.+..+..++.+-+|++-|+++|.--+|
T Consensus 755 fifsIlgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqil 799 (1956)
T KOG2302|consen 755 FIFSILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQIL 799 (1956)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhh
Confidence 332222222222222222233455566777899999999876555
No 28
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=94.81 E-value=0.68 Score=41.15 Aligned_cols=17 Identities=6% Similarity=0.292 Sum_probs=14.0
Q ss_pred hhhhhcchhhHHHHHhh
Q psy6107 14 KLWFMLEMYSFVDYFTI 30 (161)
Q Consensus 14 ~~~y~~~~~~iiDl~~~ 30 (161)
...|+++.||++|.+..
T Consensus 415 ~~~y~~~~wn~~d~~~~ 431 (743)
T TIGR00870 415 IFEYIHQLWNILDFGMN 431 (743)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45799999999999544
No 29
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=94.03 E-value=0.047 Score=38.00 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=31.9
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
.+..+++|++..+++. +-++..|.+..+|++...+.+.++++.+
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~ 86 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIA 86 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 6788899999888876 5578999999999999999999887654
No 30
>KOG3599|consensus
Probab=93.26 E-value=2.7 Score=37.97 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=17.9
Q ss_pred hhhhhcchhhHHHHHhhhhHHHH
Q psy6107 14 KLWFMLEMYSFVDYFTIPPSFVS 36 (161)
Q Consensus 14 ~~~y~~~~~~iiDl~~~~P~~~~ 36 (161)
.++|++++||++|++...=..+.
T Consensus 492 ~~~y~~s~wN~ld~~i~~ls~~~ 514 (798)
T KOG3599|consen 492 LGRYVRSKWNWLDLAIVLLSVVL 514 (798)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Confidence 34999999999999886654443
No 31
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=92.30 E-value=0.46 Score=39.07 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=36.3
Q ss_pred chhhhhHhhhhhheeccccc--cccccccchhHHHHHHHHHhhhh
Q psy6107 111 LSYWTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLVS 153 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYG--Di~P~t~~~ri~~~~~~l~g~~~ 153 (161)
....++.+++.++.+|.||. |..--++..+++.++.|++|.+-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 56788999999999999984 66666778999999999999653
No 32
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=87.80 E-value=2.5 Score=36.53 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=36.1
Q ss_pred cchhhhhHhhhhhheeccc--cccccccccchhHHHHHHHHHh
Q psy6107 110 QLSYWTCVYFLIVTMSTVG--YGDVYCQTILGRTFLVFFLLVG 150 (161)
Q Consensus 110 ~~~~~~slyf~~~TltTvG--YGDi~P~t~~~ri~~~~~~l~g 150 (161)
...+.+.+|=..+...|+| .|++.|.|+.+|+..++.|++|
T Consensus 449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 3578888999999999998 4668999999999999999987
No 33
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=85.62 E-value=3.1 Score=33.70 Aligned_cols=38 Identities=24% Similarity=0.564 Sum_probs=26.4
Q ss_pred hhhhHhhhhhheecccc--cccccc-ccc---hhHHHHHHHHHh
Q psy6107 113 YWTCVYFLIVTMSTVGY--GDVYCQ-TIL---GRTFLVFFLLVG 150 (161)
Q Consensus 113 ~~~slyf~~~TltTvGY--GDi~P~-t~~---~ri~~~~~~l~g 150 (161)
+.++++=++..++|||. |...|. +.. +|++.++.|+.|
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 67888899999999985 442233 344 999999999988
No 34
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=84.24 E-value=3.8 Score=30.14 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=42.4
Q ss_pred CCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107 105 FNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 105 ~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
|.+.+.-+|+|-+||+.+.=||-.-.|..+.|..-|-.+..-.+++..+-+
T Consensus 125 FP~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt 175 (180)
T PF07077_consen 125 FPGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNT 175 (180)
T ss_pred CCCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 444444699999999999999988899999999999999888888776544
No 35
>KOG3609|consensus
Probab=80.47 E-value=15 Score=33.22 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=17.7
Q ss_pred chhhhhcchhhHHHHHhhhhH
Q psy6107 13 DKLWFMLEMYSFVDYFTIPPS 33 (161)
Q Consensus 13 ~~~~y~~~~~~iiDl~~~~P~ 33 (161)
+...|++.+||++|.+.+.-+
T Consensus 409 G~~~y~~~~Wn~lDf~m~siy 429 (822)
T KOG3609|consen 409 GRDGYLAFWWNWLDFAMISIY 429 (822)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999886544
No 36
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=80.01 E-value=4.1 Score=32.97 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCCCcccchhhhhHhhhhhheeccccc--cccccccchhHHHHHHHHHhhhh
Q psy6107 104 EFNNPQQLSYWTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLVS 153 (161)
Q Consensus 104 ~~~~~~~~~~~~slyf~~~TltTvGYG--Di~P~t~~~ri~~~~~~l~g~~~ 153 (161)
.+++.+......+.++..++.+|.||. |+..-++..+++.++.|++|.+-
T Consensus 168 ~~~~~~~~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~ 219 (354)
T PF02386_consen 168 TFGGLPFGSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSP 219 (354)
T ss_dssp ---SSHHHHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-T
T ss_pred ccCCCcHHHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCcc
Confidence 344444456667788888999999996 55545667788889999888654
No 37
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=78.72 E-value=4.8 Score=34.84 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCC--C---CCccc-----chhhhhHhhhhhheeccc-ccccccc-ccchhHHHHHHHHHh
Q psy6107 84 SVWLTAAGIIHLLENSGDPFE--F---NNPQQ-----LSYWTCVYFLIVTMSTVG-YGDVYCQ-TILGRTFLVFFLLVG 150 (161)
Q Consensus 84 ~~~~~~a~~~~~~e~~~~~~~--~---~~~~~-----~~~~~slyf~~~TltTvG-YGDi~P~-t~~~ri~~~~~~l~g 150 (161)
.+++..+...+..|..++|.- . .+.+. .....|+|-+++|-||.| +..++.. ++.+..+.++.|.+|
T Consensus 290 iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~lMfIG 368 (559)
T PRK05482 290 VLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLLNMQLG 368 (559)
T ss_pred HHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHHHHHhC
Confidence 344566777888998766541 1 12221 126788888888887888 6555333 678899999999997
No 38
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=77.66 E-value=13 Score=31.76 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=30.2
Q ss_pred hhhhhHhhhhhheeccccc--cccccccch------hHHHHHHHHHh
Q psy6107 112 SYWTCVYFLIVTMSTVGYG--DVYCQTILG------RTFLVFFLLVG 150 (161)
Q Consensus 112 ~~~~slyf~~~TltTvGYG--Di~P~t~~~------ri~~~~~~l~g 150 (161)
++.++++=++.++.|||-| ...|.++.+ |++.++.|++|
T Consensus 424 ~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 424 PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 5788888999999999964 444334444 99999999987
No 39
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=75.57 E-value=13 Score=30.48 Aligned_cols=44 Identities=9% Similarity=0.252 Sum_probs=31.8
Q ss_pred chhhhhHhhhhhheeccccccccc------cccchhHHHHHHHHHhhhhc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYC------QTILGRTFLVFFLLVGLVSD 154 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P------~t~~~ri~~~~~~l~g~~~~ 154 (161)
.+++||++-++++++|-|+.-... .++.-.++.++.|++|-+=+
T Consensus 127 ~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF 176 (390)
T TIGR00933 127 MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGF 176 (390)
T ss_pred hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCH
Confidence 488999999999999999853322 12335677788888876543
No 40
>PRK10750 potassium transporter; Provisional
Probab=73.56 E-value=7.8 Score=33.03 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=33.1
Q ss_pred chhhhhHhhhhhheeccccc--cccccccchhHHHHHHHHHhhhh
Q psy6107 111 LSYWTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLVS 153 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYG--Di~P~t~~~ri~~~~~~l~g~~~ 153 (161)
++..+|++-+++.+||.||. |+.--++..+.+..+.|++|-+-
T Consensus 303 ~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~ 347 (483)
T PRK10750 303 MTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCA 347 (483)
T ss_pred HHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCc
Confidence 56778887777778999996 55555566788999999998754
No 41
>KOG3676|consensus
Probab=73.56 E-value=15 Score=33.06 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCC-C------CCCcccchhhhhHhhhhhhe--ecccccccccccc-----chhHHHHH
Q psy6107 80 SIFISVWLTAAGIIHLLENSGDPF-E------FNNPQQLSYWTCVYFLIVTM--STVGYGDVYCQTI-----LGRTFLVF 145 (161)
Q Consensus 80 ~~~~~~~~~~a~~~~~~e~~~~~~-~------~~~~~~~~~~~slyf~~~Tl--tTvGYGDi~P~t~-----~~ri~~~~ 145 (161)
++.+..++.+|..+|.+-.+.++. . +.+.. .+..+|+.=.+.|+ .|+||||.....+ .++++-+.
T Consensus 548 ~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m-~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~ 626 (782)
T KOG3676|consen 548 LIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPM-CNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVA 626 (782)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccccccccccccc-CChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHH
Confidence 444455567788888774432221 1 22222 34445544444444 6899999866643 46666555
Q ss_pred HHHHh
Q psy6107 146 FLLVG 150 (161)
Q Consensus 146 ~~l~g 150 (161)
.|++-
T Consensus 627 y~ilv 631 (782)
T KOG3676|consen 627 YMILV 631 (782)
T ss_pred HHHHH
Confidence 55543
No 42
>PRK10750 potassium transporter; Provisional
Probab=73.20 E-value=46 Score=28.42 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=29.8
Q ss_pred hhhhHhhhhhheeccccc--cc----cccccchhHHHHHHHHHh
Q psy6107 113 YWTCVYFLIVTMSTVGYG--DV----YCQTILGRTFLVFFLLVG 150 (161)
Q Consensus 113 ~~~slyf~~~TltTvGYG--Di----~P~t~~~ri~~~~~~l~g 150 (161)
..+|+-=++.+++++|-| .. ..-++.+|++.++.|++|
T Consensus 422 ~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG 465 (483)
T PRK10750 422 DFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG 465 (483)
T ss_pred HHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence 567777788889988854 33 345678999999999987
No 43
>KOG3713|consensus
Probab=70.41 E-value=22 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy6107 50 RALRLMTVPDILQYLNILKTSSSIRLA 76 (161)
Q Consensus 50 r~lRl~rl~r~~~~~~~l~~~~~~~~~ 76 (161)
+++|++|+.|++|.++.-+++.+.+..
T Consensus 308 ~vvrvlR~lRI~RI~KLaRhS~GLr~l 334 (477)
T KOG3713|consen 308 LVVRVLRVLRILRIFKLARHSTGLRTL 334 (477)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 566777777777777777777766543
No 44
>KOG1052|consensus
Probab=70.24 E-value=8.8 Score=33.65 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhcCCCCCC--CC-CcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhc
Q psy6107 86 WLTAAGIIHLLENSGDPFE--FN-NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSD 154 (161)
Q Consensus 86 ~~~~a~~~~~~e~~~~~~~--~~-~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~ 154 (161)
.++.+++.|..++..+... .. .........++|+++.++..-| +|..|.+..+|++...|.+.+.++.
T Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ 422 (656)
T KOG1052|consen 352 LLLVGLLLWILERLSPYELPPRQIVTSLFSLLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILI 422 (656)
T ss_pred HHHHHHHHHHHhccccccCCccccceeEeecccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHH
Confidence 3456666677766333222 00 0111334446677777777777 4599999999999999999988664
No 45
>KOG1054|consensus
Probab=67.87 E-value=3.7 Score=35.84 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=36.3
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSD 154 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~ 154 (161)
-..++|+||+...+.-=| -||.|.+..||++..+|=++-++++
T Consensus 594 FgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIi 636 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIII 636 (897)
T ss_pred chhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhh
Confidence 577899999999998777 4999999999999888777666554
No 46
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=67.61 E-value=18 Score=32.70 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccc-chhhhhHhhhhhheeccccc--cccccccchhHHHHHHHHHhhhhccccccc
Q psy6107 84 SVWLTAAGIIHLLENSGDPFEFNNPQQ-LSYWTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLVSDPFPLFR 160 (161)
Q Consensus 84 ~~~~~~a~~~~~~e~~~~~~~~~~~~~-~~~~~slyf~~~TltTvGYG--Di~P~t~~~ri~~~~~~l~g~~~~a~~i~~ 160 (161)
.++.+....++.+|.++ + ..++.+. .+..+|++-++++ =|.|+. |+.-.+++.+++.+++|.+|..-.|..|.+
T Consensus 593 iL~~ig~ilf~lLE~nn-~-tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~PtaggIK~ 669 (800)
T TIGR00934 593 GLNAIDLILFIILDWGS-S-VVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISIRR 669 (800)
T ss_pred HHHHHHHHHHHHHhcCc-c-ccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCccceeec
Confidence 33444555666777643 3 3333322 5777887777665 678876 556667889999999999998777766654
No 47
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=65.46 E-value=2.5 Score=30.14 Aligned_cols=42 Identities=29% Similarity=0.189 Sum_probs=31.6
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhh
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~ 152 (161)
.....+.+|...+++++|||++.|.+..+.....-.++.+..
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~ 157 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLG 157 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccC
Confidence 355667778889999999999999888777666655555443
No 48
>KOG4440|consensus
Probab=58.83 E-value=34 Score=30.37 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhcCCCCCCCC-------CcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107 87 LTAAGIIHLLENSGDPFEFN-------NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 87 ~~~a~~~~~~e~~~~~~~~~-------~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
++.|...|.++.-.+-+-|. ....-++-.|+||+-.-+-.-|-|.-+|.+-..|++.++|.=+..++.|
T Consensus 581 hvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVA 656 (993)
T KOG4440|consen 581 HVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVA 656 (993)
T ss_pred HHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeeh
Confidence 45666777776543322221 1122467789999998888899999999999999999888766555443
No 49
>KOG1545|consensus
Probab=53.49 E-value=97 Score=25.79 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy6107 48 FLRALRLMTVPDILQYLNILKTSSSIRLA 76 (161)
Q Consensus 48 ~lr~lRl~rl~r~~~~~~~l~~~~~~~~~ 76 (161)
.+-++|+.|+.|++|..+.-+++...++.
T Consensus 322 SlAILRViRLVRVFRIFKLSRHSkGLQIL 350 (507)
T KOG1545|consen 322 SLAILRVIRLVRVFRIFKLSRHSKGLQIL 350 (507)
T ss_pred hHHHHHHHHHHHHhhheeeccccchHHHH
Confidence 46788899999888888888887776654
No 50
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=42.30 E-value=1.1e+02 Score=27.94 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=30.3
Q ss_pred chhhhhHhhhhhheecccccc--------cccc-ccchhHHHHHHHHHh
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGD--------VYCQ-TILGRTFLVFFLLVG 150 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGD--------i~P~-t~~~ri~~~~~~l~g 150 (161)
.+..+-++=++..+.|||..- .+|+ ++.||++.+++|+.|
T Consensus 736 fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 736 FNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred ccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 456677777888888888532 2344 678999999999987
No 51
>PLN03223 Polycystin cation channel protein; Provisional
Probab=41.50 E-value=1.1e+02 Score=29.89 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6107 48 FLRALRLMTVPDILQYLNILKTSS---SIRLAQLVSIFISVWLTAAGIIHLLEN 98 (161)
Q Consensus 48 ~lr~lRl~rl~r~~~~~~~l~~~~---~~~~~~l~~~~~~~~~~~a~~~~~~e~ 98 (161)
+++.+|++|++|..+.++.+.... ...+...+++++.+++.+|.+-+.+.+
T Consensus 1300 FLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFG 1353 (1634)
T PLN03223 1300 ILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFG 1353 (1634)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555444322 223333444444444555555555544
No 52
>KOG0501|consensus
Probab=33.82 E-value=3.4e+02 Score=24.31 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCCcccchhhhhHhhhhhhe
Q psy6107 47 RFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENS-GDPFEFNNPQQLSYWTCVYFLIVTM 124 (161)
Q Consensus 47 ~~lr~lRl~rl~r~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~a~~~~~~e~~-~~~~~~~~~~~~~~~~slyf~~~Tl 124 (161)
.++..+++.|++|+.|..|.+.+....- +..+.+.+|...+.|...-.+-.. ++.+..+...+.--.||.-|-...-
T Consensus 322 SLFSaLKVVRLLRLGRVaRKLD~YlEYG-AA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~ 399 (971)
T KOG0501|consen 322 SLFSALKVVRLLRLGRVARKLDHYLEYG-AAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLAND 399 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhh
Confidence 4566677777777777777776544332 223344444444445544444443 2333233222222234444655543
No 53
>KOG1053|consensus
Probab=27.28 E-value=2.6e+02 Score=26.38 Aligned_cols=23 Identities=0% Similarity=0.078 Sum_probs=19.5
Q ss_pred cccccchhHHHHHHHHHhhhhcc
Q psy6107 133 YCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 133 ~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
.|.++.+|+.+.+|.++++++.|
T Consensus 630 nPKgtTskiMv~VWAfFavifLA 652 (1258)
T KOG1053|consen 630 NPKGTTSKIMVLVWAFFAVIFLA 652 (1258)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999998875
No 54
>KOG0500|consensus
Probab=26.67 E-value=2.3e+02 Score=24.50 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q psy6107 51 ALRLMTVPDILQYLNILKTSSS 72 (161)
Q Consensus 51 ~lRl~rl~r~~~~~~~l~~~~~ 72 (161)
..|+.|+.|+.|..+-......
T Consensus 99 ~~r~nRllk~yRl~~F~~rTet 120 (536)
T KOG0500|consen 99 LERLNRLLKIYRLFEFFDRTET 120 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666666666666554433
No 55
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=54 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.9
Q ss_pred hheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107 122 VTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 122 ~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
-+.|.-||-|++.+-+..-+++.+.+++++..+.
T Consensus 220 g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ 253 (885)
T COG1615 220 GTFTGAGYTDINAQLPAKLILIAIALLCAIAFFS 253 (885)
T ss_pred CcccccCceeeeeeccHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999988888888888886654
No 56
>PF08254 Leader_Thr: Threonine leader peptide; InterPro: IPR011720 This family consists of examples of the threonine biosynthesis (thr) operon leader peptide, also called the thr operon attenuator. The small gene for this peptide is often missed in genome annotation. It should be looked for in genomes of the proteobacteria, immediately upstream of genes for threonine biosynthesis, typically aspartokinase I/homoserine dehydrogenase, homoserine kinase, and threonine synthase. Transcription of the rest of the Thr operon is attenuated (mostly turned off) unless the ribosome pauses during a stretch of the leader sequence rich in both Ile (made from Thr) and in Thr itself because of the scarcity of those amino acids at the time. The leader peptide itself, once made, may have no role other than to be degraded. Similar systems exist for some other amino acid biosynthetic operons, such as Trp.; GO: 0009088 threonine biosynthetic process, 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=24.08 E-value=26 Score=16.23 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=6.1
Q ss_pred hhheeccccc
Q psy6107 121 IVTMSTVGYG 130 (161)
Q Consensus 121 ~~TltTvGYG 130 (161)
++|.+|.|+|
T Consensus 11 itt~~ttgng 20 (22)
T PF08254_consen 11 ITTTTTTGNG 20 (22)
T ss_pred EEEEEecccC
Confidence 3455567776
No 57
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=23.57 E-value=27 Score=20.62 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=18.8
Q ss_pred hhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 121 ~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+.|...+|++|-.................-..++--|+
T Consensus 14 v~t~~n~G~~~~f~~~Wl~a~~~a~~vAfp~~l~v~P~ 51 (60)
T PF11391_consen 14 VMTLLNVGFSDGFFSRWLKAWLIAWPVAFPISLIVAPL 51 (60)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777666555544433333333333333343
No 58
>PF00959 Phage_lysozyme: Phage lysozyme; InterPro: IPR002196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 24 GH24 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). This entry includes Bacteriophage lambda lysozyme and Escherichia coli endolysin []. Lysozyme helps to release mature phage particles from the cell wall by breaking down the peptidoglycan. The enzyme hydrolyses the 1,4-beta linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of prokaryotic cell walls. E. coli endolysin also functions in bacterial cell lysis and acts as a transglycosylase. The Bacteriophage T4 lysozyme structure contains 2 domains, the interface between which forms the active-site cleft. The N terminus of the 2 domains undergoes a 'hinge-bending' motion about an axis passing through the molecular waist [, ]. This mobility is thought to be important in allowing access of substrates to the enzyme active site.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1XJT_A 1XJU_A 1K28_A 1WTH_A 2Z6B_A 1AM7_C 3D3D_B 1D9U_B 2ANX_A 2ANV_B ....
Probab=22.29 E-value=44 Score=21.88 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=7.9
Q ss_pred ccccc-ccccccc
Q psy6107 126 TVGYG-DVYCQTI 137 (161)
Q Consensus 126 TvGYG-Di~P~t~ 137 (161)
||||| +..+...
T Consensus 3 TIG~G~~~~~v~~ 15 (110)
T PF00959_consen 3 TIGYGHHGKDVDP 15 (110)
T ss_dssp EEETTECSSSCCT
T ss_pred EEEECCccCCCCC
Confidence 79999 5555443
Done!