Query psy6107
Match_columns 161
No_of_seqs 136 out of 1593
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 17:46:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 100.0 4.7E-31 1.6E-35 198.7 12.6 150 2-158 54-211 (223)
2 2r9r_B Paddle chimera voltage 100.0 9.9E-29 3.4E-33 206.2 9.4 152 2-158 254-421 (514)
3 3beh_A MLL3241 protein; transm 99.9 8.6E-29 2.9E-33 197.8 4.6 150 2-158 54-207 (355)
4 2a9h_A Voltage-gated potassium 99.9 3.5E-25 1.2E-29 158.3 7.1 115 22-158 15-130 (155)
5 2ih3_C Voltage-gated potassium 99.9 1.8E-23 6.2E-28 143.9 7.6 72 82-158 36-107 (122)
6 3rvy_A ION transport protein; 99.8 7.5E-22 2.6E-26 153.4 3.2 148 2-158 76-232 (285)
7 2k1e_A Water soluble analogue 99.8 4E-19 1.4E-23 118.7 8.0 75 79-158 12-86 (103)
8 4h33_A LMO2059 protein; bilaye 99.8 1.1E-18 3.6E-23 122.3 6.2 70 79-158 20-89 (137)
9 3eff_K Voltage-gated potassium 99.7 1.8E-18 6.3E-23 121.3 6.9 75 79-158 12-86 (139)
10 2q67_A Potassium channel prote 99.7 8.7E-18 3E-22 114.1 7.9 48 111-158 48-95 (114)
11 3ldc_A Calcium-gated potassium 99.7 4.9E-18 1.7E-22 108.9 6.1 69 78-158 6-74 (82)
12 4dxw_A Navrh, ION transport pr 99.7 2.4E-17 8.1E-22 124.2 8.3 144 2-150 57-207 (229)
13 3vou_A ION transport 2 domain 99.7 5.6E-17 1.9E-21 114.9 8.1 48 111-158 51-98 (148)
14 3ouf_A Potassium channel prote 99.7 9.6E-17 3.3E-21 106.0 6.1 48 111-158 31-78 (97)
15 3pjs_K KCSA, voltage-gated pot 99.6 2.3E-17 8E-22 119.0 -2.8 69 85-158 45-113 (166)
16 1xl4_A Inward rectifier potass 99.6 1.5E-15 5.1E-20 118.9 7.2 75 79-158 54-128 (301)
17 1p7b_A Integral membrane chann 99.6 2.8E-15 9.5E-20 118.7 6.8 72 82-158 71-142 (333)
18 2qks_A KIR3.1-prokaryotic KIR 99.6 7.5E-15 2.6E-19 115.8 8.1 72 82-158 53-124 (321)
19 3um7_A Potassium channel subfa 99.5 3E-14 1E-18 111.5 7.5 50 109-158 112-161 (309)
20 3ukm_A Potassium channel subfa 99.4 9.5E-14 3.2E-18 107.3 6.4 52 107-158 88-139 (280)
21 3ukm_A Potassium channel subfa 99.4 4.5E-13 1.5E-17 103.5 6.8 61 87-158 187-254 (280)
22 3sya_A G protein-activated inw 99.4 8.1E-13 2.8E-17 104.6 8.3 80 79-158 50-139 (340)
23 3um7_A Potassium channel subfa 99.4 3.4E-13 1.2E-17 105.6 5.1 59 88-158 212-276 (309)
24 3spc_A Inward-rectifier K+ cha 99.4 1.9E-12 6.5E-17 102.6 8.8 80 79-158 52-142 (343)
25 4gx0_A TRKA domain protein; me 99.4 5.4E-13 1.9E-17 112.1 5.4 48 111-158 50-97 (565)
26 1lnq_A MTHK channels, potassiu 99.3 1.7E-14 5.9E-19 114.0 -4.1 48 111-158 44-91 (336)
27 1ors_C Potassium channel; volt 99.3 1.3E-12 4.4E-17 90.7 3.7 61 2-64 52-112 (132)
28 2kyh_A KVAP, voltage-gated pot 99.2 8E-12 2.7E-16 88.1 3.0 62 2-68 67-128 (147)
29 3kg2_A Glutamate receptor 2; I 93.7 0.064 2.2E-06 46.2 4.6 44 111-155 562-605 (823)
30 2k44_A Hsapbk, K+-channel volt 88.5 0.024 8.4E-07 27.5 -1.9 23 34-56 3-25 (28)
31 2kyh_A KVAP, voltage-gated pot 86.4 0.58 2E-05 32.2 3.2 23 49-71 106-128 (147)
32 1ors_C Potassium channel; volt 84.6 2.2 7.6E-05 28.5 5.5 17 21-37 38-54 (132)
33 3pjz_A Potassium uptake protei 80.0 2.1 7.3E-05 35.3 4.7 42 111-152 305-348 (494)
34 1orq_C Potassium channel; volt 77.7 7.6 0.00026 27.8 6.7 17 20-36 39-55 (223)
35 4dxw_A Navrh, ION transport pr 66.0 5.7 0.0002 28.7 3.7 20 112-131 161-180 (229)
36 3pjz_A Potassium uptake protei 65.3 8.6 0.00029 31.7 4.9 39 112-150 423-467 (494)
37 2lcm_A Voltage-dependent N-typ 61.7 11 0.00039 18.1 3.1 14 46-59 6-19 (28)
38 3rvy_A ION transport protein; 52.3 5.5 0.00019 29.8 1.5 22 47-68 114-135 (285)
39 2r9r_B Paddle chimera voltage 51.6 11 0.00037 31.1 3.3 26 49-74 305-330 (514)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.97 E-value=4.7e-31 Score=198.75 Aligned_cols=150 Identities=21% Similarity=0.305 Sum_probs=111.5
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc---hhhHHHHHHHHHHHHHHHHHH----HHHHHHhHH-H
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT---WIGLRFLRALRLMTVPDILQY----LNILKTSSS-I 73 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~---~~~~~~lr~lRl~rl~r~~~~----~~~l~~~~~-~ 73 (161)
+|+++|++++++|++|+|+ |++|+++++|+++....... ...+|.+|++|++|+.|..+. .+.+.+..+ .
T Consensus 54 ~e~~lr~~~~~~~~~y~~~--~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~ 131 (223)
T 1orq_C 54 ADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKI 131 (223)
T ss_dssp HHHHHHHHTTSCHHHHHHH--HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHH--hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999998 89999999999876532111 234666666666666666552 222222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhh
Q psy6107 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVS 153 (161)
Q Consensus 74 ~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~ 153 (161)
++..++...+..++.+|+.+|..|++++++. ..+|.+|+||+++|+||+||||++|+|+.||++++++|+.|+++
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~ 206 (223)
T 1orq_C 132 RFYHLFGAVMLTVLYGAFAIYIVEYPDPNSS-----IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISA 206 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTCS-----CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC-----cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHH
Confidence 2223333344445678888999998544332 35899999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy6107 154 DPFPL 158 (161)
Q Consensus 154 ~a~~i 158 (161)
+|+++
T Consensus 207 ~~~~i 211 (223)
T 1orq_C 207 LTLLI 211 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.95 E-value=9.9e-29 Score=206.21 Aligned_cols=152 Identities=23% Similarity=0.389 Sum_probs=110.4
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc-------hhhHHHHHHHHHHHHHHHHHHH---HHHH---
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT-------WIGLRFLRALRLMTVPDILQYL---NILK--- 68 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~-------~~~~~~lr~lRl~rl~r~~~~~---~~l~--- 68 (161)
+|+++|++++++|++|++++||++|+++++|+++.+..... ...++.+|++|++|++|++|+. +.++
T Consensus 254 iE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~ 333 (514)
T 2r9r_B 254 FEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILG 333 (514)
T ss_dssp HHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 69999999999999999999999999999999987765321 1113444444444444444432 2222
Q ss_pred HhH--H-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHH
Q psy6107 69 TSS--S-IRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVF 145 (161)
Q Consensus 69 ~~~--~-~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~ 145 (161)
... + .++..++++.+..+.++|++.|..|+..++.++ .++.+|+||+++|+||+||||+.|.|+.||+++++
T Consensus 334 ~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F-----~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~ 408 (514)
T 2r9r_B 334 QTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQF-----PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSL 408 (514)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSC-----SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCccc-----cchhhhhheeeeEEEecccCCCCCCCcchHhhehh
Confidence 111 1 122222222333355778888888886554444 47889999999999999999999999999999999
Q ss_pred HHHHhhhhccccc
Q psy6107 146 FLLVGLVSDPFPL 158 (161)
Q Consensus 146 ~~l~g~~~~a~~i 158 (161)
+|+.|++++++++
T Consensus 409 ~~l~G~~~l~l~i 421 (514)
T 2r9r_B 409 CAIAGVLTIALPV 421 (514)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.95 E-value=8.6e-29 Score=197.76 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=116.6
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhh-hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTI-PPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSS---SIRLAQ 77 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~-~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~---~~~~~~ 77 (161)
+|+.+|++++++|.+|+++++|++|++++ +|++.... ...+.+|++|++|++|+.|..+.++.+.... ..++..
T Consensus 54 ~e~~~r~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~~~--~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~ 131 (355)
T 3beh_A 54 LQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLL--DGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIG 131 (355)
T ss_dssp HHHHHHHHCCCSCSSCCCHHHHHHHHHHHHHHHHHHHS--CCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHH
T ss_pred HHHHHhcccccccceeccCcchHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999 68766432 2233456666666666666666666555432 233344
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107 78 LVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP 157 (161)
Q Consensus 78 l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~ 157 (161)
++.+.+.+++++|+.+|.+|++.+|+.+ .+|.+|+||+++|+||+||||++|.|+.||++++++|+.|+++++++
T Consensus 132 ~~~~~~~~~~~~a~~~~~~e~~~~~~~f-----~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~ 206 (355)
T 3beh_A 132 VTTLFGVVLFAVALAAYVIERDIQPEKF-----GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLW 206 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHH-----SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccc-----ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4444555667899999999987655432 47899999999999999999999999999999999999999999987
Q ss_pred c
Q psy6107 158 L 158 (161)
Q Consensus 158 i 158 (161)
+
T Consensus 207 ~ 207 (355)
T 3beh_A 207 A 207 (355)
T ss_dssp H
T ss_pred H
Confidence 6
No 4
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.91 E-value=3.5e-25 Score=158.26 Aligned_cols=115 Identities=21% Similarity=0.268 Sum_probs=63.9
Q ss_pred hhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCC
Q psy6107 22 YSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRL-AQLVSIFISVWLTAAGIIHLLENSG 100 (161)
Q Consensus 22 ~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~-~~l~~~~~~~~~~~a~~~~~~e~~~ 100 (161)
.+++|+++++|+ +|.+|++|++|++ +.|. ......+. ...+...+..++.++.++|..|+..
T Consensus 15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~----~~~l~~~~~~~~~~~~~~~i~~~a~~~~~~E~~~ 77 (155)
T 2a9h_A 15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRH----GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGA 77 (155)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 378999999997 3555555555555 2222 11111111 1222233344567888899999865
Q ss_pred CCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 101 DPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 101 ~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+++. ..+|.||+||+++|+|||||||++|+|+.||++++++++.|++++|+++
T Consensus 78 ~~~~-----~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~ 130 (155)
T 2a9h_A 78 PGAA-----LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVF 130 (155)
T ss_dssp SCSS-----TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc-----cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 4332 2589999999999999999999999999999999999999999999875
No 5
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.89 E-value=1.8e-23 Score=143.94 Aligned_cols=72 Identities=26% Similarity=0.395 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
.+.+++.++..+|..|++.+++ +..+|.||+||+++|+||+||||++|+|+.||++++++++.|+.++++++
T Consensus 36 ~~~~~~~~a~~~~~~E~~~~~~-----~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~ 107 (122)
T 2ih3_C 36 LVIVLLAGSYLAVLAERGAPGA-----QLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 107 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTC-----CCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhheeeecCCCC-----ccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3344557788899999865432 23689999999999999999999999999999999999999999998875
No 6
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.83 E-value=7.5e-22 Score=153.43 Aligned_cols=148 Identities=17% Similarity=0.230 Sum_probs=101.9
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSS---IRLAQL 78 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~---~~~~~l 78 (161)
+|+++|+++++ ++|++++||++|+++++|.++.. .+....+|++|++|++|+.|..+.++.+..... ..+...
T Consensus 76 ~E~~lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~--~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~ 151 (285)
T 3rvy_A 76 IEIILRIYVHR--ISFFKDPWSLFDFFVVAISLVPT--SSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSV 151 (285)
T ss_dssp HHHHHHHHTTG--GGGGGCHHHHHHHHHHHHHHSCS--SSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHHh--HHHHcCChHHhHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999998 78999999999999999876542 122223444444444444444444444333221 122333
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccc-ccc-ccccch----hHHHHHHHHHhhh
Q psy6107 79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYG-DVY-CQTILG----RTFLVFFLLVGLV 152 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYG-Di~-P~t~~~----ri~~~~~~l~g~~ 152 (161)
..+...++..+|...+..+++.+|++| .++.+|+||+.+|+||+||| |+. |.+..| +.++.+.++.|++
T Consensus 152 ~~~~~~~~~~fa~~g~~~f~~~~~~~F-----~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~ 226 (285)
T 3rvy_A 152 IALMTLFFYIFAIMATQLFGERFPEWF-----GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFV 226 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHH-----SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHH
Confidence 334444455677777777776555433 47789999999999999999 985 888765 7888999999999
Q ss_pred hccccc
Q psy6107 153 SDPFPL 158 (161)
Q Consensus 153 ~~a~~i 158 (161)
++++|+
T Consensus 227 ~lnl~~ 232 (285)
T 3rvy_A 227 MINLVV 232 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 7
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.78 E-value=4e-19 Score=118.71 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+...+..++.++..++..|+..+++ +..+|.||+||+++|+|||||||++|+|+.||++++++++.|+.++++.+
T Consensus 12 ~~~~~~~~~~~a~~~~~~E~~~~~~-----~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~ 86 (103)
T 2k1e_A 12 EEELQKVLEEASKKAVEAERGAPGA-----ALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVT 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTC-----CCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCc-----ccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667888999999865432 23589999999999999999999999999999999999999999998765
No 8
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.75 E-value=1.1e-18 Score=122.31 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+..++.+.+++++.+++.|.+ .++|.||+||+++|+|||||||++|.|+.||++++++|+.|++++|+++
T Consensus 20 l~~~~~~~~~~~~~~~~~e~~----------~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~ 89 (137)
T 4h33_A 20 LMIFVLLVIIIPVPMVFIEPE----------INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMIT 89 (137)
T ss_dssp HHHHHHHHHHTHHHHHHHCSS----------CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444455677777777753 1479999999999999999999999999999999999999999999875
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.75 E-value=1.8e-18 Score=121.29 Aligned_cols=75 Identities=27% Similarity=0.429 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+...+..++++++.++..|++.+++ ...+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++++
T Consensus 12 ~~~~~~~~~~~a~~~~~~e~~~~~~-----~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~ 86 (139)
T 3eff_K 12 TVLLVIVLLAGSYLAVLAERGAPGA-----QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 86 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCTTC-----CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCc-----ccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3444455667888899999865432 23689999999999999999999999999999999999999999998765
No 10
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.73 E-value=8.7e-18 Score=114.13 Aligned_cols=48 Identities=29% Similarity=0.476 Sum_probs=45.5
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
++|.||+||+++|+||+||||++|+|+.||++++++++.|+.+++..+
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~ 95 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFI 95 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999988765
No 11
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.73 E-value=4.9e-18 Score=108.86 Aligned_cols=69 Identities=26% Similarity=0.476 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107 78 LVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP 157 (161)
Q Consensus 78 l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~ 157 (161)
++.+++..+...+..++..|+ +++.||+||+++|+||+||||++|+|+.||+++++.++.|+.++++.
T Consensus 6 ~~~l~~~~~~~g~~~~~~~e~------------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~ 73 (82)
T 3ldc_A 6 ILLLVLAVIIYGTAGFHFIEG------------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 334444555567777778886 48999999999999999999999999999999999999999999876
Q ss_pred c
Q psy6107 158 L 158 (161)
Q Consensus 158 i 158 (161)
+
T Consensus 74 ~ 74 (82)
T 3ldc_A 74 V 74 (82)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.71 E-value=2.4e-17 Score=124.25 Aligned_cols=144 Identities=16% Similarity=0.261 Sum_probs=85.9
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSS---IRLAQL 78 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~---~~~~~l 78 (161)
+|+++|++++++|++|++++||++|+++++|..+....+.....+|.+|++|++|+.|..+.++.+.+... .++..+
T Consensus 57 ~E~~lri~~~~~~~~y~~~~wni~D~~~v~~~~i~~~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~ 136 (229)
T 4dxw_A 57 IEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFV 136 (229)
T ss_dssp HHHHHHHHC---------CHHHHHHHHHHHHTTCC--------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchhHHhcCCcHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999998887654322222233466666666666666665555444322 223333
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccc----cccchhHHHHHHHHHh
Q psy6107 79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYC----QTILGRTFLVFFLLVG 150 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P----~t~~~ri~~~~~~l~g 150 (161)
..+...++..+|...+..+++.+|++++ ++.+|+++...++|+.|++|+-. .++.+.++-+..+++|
T Consensus 137 ~~~l~~~~~ifa~~g~~lf~~~~~~~F~-----~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~ 207 (229)
T 4dxw_A 137 SLLLFIILYIYATMGAILFGNDDPSRWG-----DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIIC 207 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCTTTS-----SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccccc-----CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444444557788778888777776564 66789999999999999999722 2344555544444443
No 13
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.69 E-value=5.6e-17 Score=114.86 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=45.3
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
.+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++..+
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~ 98 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFI 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999988654
No 14
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.66 E-value=9.6e-17 Score=105.97 Aligned_cols=48 Identities=33% Similarity=0.562 Sum_probs=45.1
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
.+|.||+||+++|+|||||||++|+|+.||+++++.++.|+.+++..+
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i 78 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFI 78 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999887654
No 15
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.59 E-value=2.3e-17 Score=118.96 Aligned_cols=69 Identities=29% Similarity=0.441 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 85 VWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 85 ~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+++.+++++|..|++.+++ ...+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++++
T Consensus 45 ~~~~~a~~~~~~e~~~~~~-----~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~ 113 (166)
T 3pjs_K 45 VLLAGSYLAVLAERGAPGA-----QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 113 (166)
T ss_dssp TTTTTSSSSSSTTSSSTTC-----CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCc-----ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788888765322 23689999999999999999999999999999999999999999998865
No 16
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.59 E-value=1.5e-15 Score=118.88 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+..++.+++++|++++..+... .+....++.+|+||+++|+|||||||++|.++.||+++++.++.|++++|+++
T Consensus 54 ~~~~~~~~l~fa~ly~~~~~~~-----~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~ 128 (301)
T 1xl4_A 54 TGLYLVTNALFALAYLACGDVI-----ENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 128 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCS-----TTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccc-----CCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667888854444221 12223689999999999999999999999999999999999999999999875
No 17
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.57 E-value=2.8e-15 Score=118.69 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
++.+++++|.+ |+.|++.. .+....+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++|+++
T Consensus 71 ~l~~~l~fall-y~~e~~~~----~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~i 142 (333)
T 1p7b_A 71 FVVNNTLFALL-YQLGDAPI----ANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST 142 (333)
T ss_dssp HHHHHHHHHTT-TSSSSSCC----CCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhcccc----cCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554 66665422 22223589999999999999999999999999999999999999999998865
No 18
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.56 E-value=7.5e-15 Score=115.79 Aligned_cols=72 Identities=24% Similarity=0.319 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
++..++++| +++.|++... ++....+|.+|+||+++|+|||||||++|.|+.||++++++++.|++++|+++
T Consensus 53 ~~~~~~~fa--~~~~eg~~~~---~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~ 124 (321)
T 2qks_A 53 FLLLNTAFA--TLYMLGSAPI---ANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALAT 124 (321)
T ss_dssp HHHHHHHHH--HHHHTSSSCB---TTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHcCCccc---cCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666 3356654322 22222489999999999999999999999999999999999999999999875
No 19
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=111.54 Aligned_cols=50 Identities=30% Similarity=0.489 Sum_probs=46.3
Q ss_pred ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 109 QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 109 ~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+.++|.||+||+++|+|||||||++|.|+.||+++++.+++|+.++++.+
T Consensus 112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~ 161 (309)
T 3um7_A 112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILL 161 (309)
T ss_dssp -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999988765
No 20
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.45 E-value=9.5e-14 Score=107.28 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=46.2
Q ss_pred CcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 107 NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 107 ~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
+.+.+++.||+||+++|+|||||||++|.|+.||+++++.+++|+.++++.+
T Consensus 88 ~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~ 139 (280)
T 3ukm_A 88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFL 139 (280)
T ss_dssp --CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3445899999999999999999999999999999999999999998877644
No 21
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=103.52 Aligned_cols=61 Identities=25% Similarity=0.457 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccc-------hhHHHHHHHHHhhhhccccc
Q psy6107 87 LTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTIL-------GRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 87 ~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~-------~ri~~~~~~l~g~~~~a~~i 158 (161)
++.+..++..|.+ ++|.||+||+++|+|||||||++|.++. +|++++++++.|+++++..+
T Consensus 187 ~~ga~~~~~~E~~-----------~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~ 254 (280)
T 3ukm_A 187 FIPAAVFSVLEDD-----------WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVL 254 (280)
T ss_dssp HHHHHHHHHHSSS-----------CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcC-----------CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666731 5899999999999999999999999996 59999999999999988765
No 22
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.39 E-value=8.1e-13 Score=104.62 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhh---cCCCC---CCCC--CcccchhhhhHhhhhhheecccccccccc--ccchhHHHHHHHH
Q psy6107 79 VSIFISVWLTAAGIIHLLE---NSGDP---FEFN--NPQQLSYWTCVYFLIVTMSTVGYGDVYCQ--TILGRTFLVFFLL 148 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~e---~~~~~---~~~~--~~~~~~~~~slyf~~~TltTvGYGDi~P~--t~~~ri~~~~~~l 148 (161)
...++..++++|.++|.+- ++.+. ++.+ -....++.+|+||+++|+|||||||++|. ++.|++++.+.++
T Consensus 50 ~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l 129 (340)
T 3sya_A 50 VMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSV 129 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHH
Confidence 3446667888999888642 22211 1110 01225899999999999999999999997 6889999999999
Q ss_pred Hhhhhccccc
Q psy6107 149 VGLVSDPFPL 158 (161)
Q Consensus 149 ~g~~~~a~~i 158 (161)
+|+++.|+|+
T Consensus 130 ~G~~l~a~~~ 139 (340)
T 3sya_A 130 LGSIVNAFMV 139 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 23
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=105.59 Aligned_cols=59 Identities=31% Similarity=0.499 Sum_probs=51.2
Q ss_pred HHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhH------HHHHHHHHhhhhccccc
Q psy6107 88 TAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRT------FLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 88 ~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri------~~~~~~l~g~~~~a~~i 158 (161)
..+..++..|+ ++|.||+||+++|+|||||||++|.++.||. +++++++.|++++++++
T Consensus 212 ~ga~~~~~~E~------------~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~ 276 (309)
T 3um7_A 212 TPTFVFCYMED------------WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVL 276 (309)
T ss_dssp HHHHHHHHHHC------------CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------------CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 44555666663 5899999999999999999999999999984 99999999999998765
No 24
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=99.36 E-value=1.9e-12 Score=102.61 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhh---hcCC----CCCCCCC--cccchhhhhHhhhhhheecccccccccc--ccchhHHHHHHH
Q psy6107 79 VSIFISVWLTAAGIIHLL---ENSG----DPFEFNN--PQQLSYWTCVYFLIVTMSTVGYGDVYCQ--TILGRTFLVFFL 147 (161)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~---e~~~----~~~~~~~--~~~~~~~~slyf~~~TltTvGYGDi~P~--t~~~ri~~~~~~ 147 (161)
...++..++++|.++|.+ +++- ++++++. .+..++.+|+||+++|+||+||||++|. ++.|++++.+.+
T Consensus 52 ~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~ 131 (343)
T 3spc_A 52 SLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQS 131 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHH
Confidence 345666788899888864 2221 1111110 1236899999999999999999999974 899999999999
Q ss_pred HHhhhhccccc
Q psy6107 148 LVGLVSDPFPL 158 (161)
Q Consensus 148 l~g~~~~a~~i 158 (161)
+.|++++|+++
T Consensus 132 l~G~~l~a~~~ 142 (343)
T 3spc_A 132 IVGCIIDSFMI 142 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 25
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.35 E-value=5.4e-13 Score=112.12 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=45.3
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
++|.+|+||+++|+|||||||++|.|+.||++++++++.|+.++++.+
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~ 97 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIIL 97 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999988764
No 26
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.34 E-value=1.7e-14 Score=114.04 Aligned_cols=48 Identities=33% Similarity=0.528 Sum_probs=45.4
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i 158 (161)
++|.+|+||+++|+||+||||++|.|+.||++++++++.|+.++++.+
T Consensus 44 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~ 91 (336)
T 1lnq_A 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAV 91 (336)
T ss_dssp CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHH
T ss_pred CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999998765
No 27
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.29 E-value=1.3e-12 Score=90.66 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=42.9
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYL 64 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~ 64 (161)
+||++|++++|+|++|++ ||++|+++++|+++....++....+|.+|++|++|++|+.|..
T Consensus 52 ~E~~lRl~~~~~~~~y~~--~niiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~ 112 (132)
T 1ors_C 52 ADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLII 112 (132)
T ss_dssp HHHHHHHHHTTSTTTTTT--TCGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999 8999999999998876652112223344444444444444433
No 28
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.18 E-value=8e-12 Score=88.14 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=47.5
Q ss_pred ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6107 2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILK 68 (161)
Q Consensus 2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~ 68 (161)
+||++|+++||+|++|+++ ||+|+++++|++...... ++++++|++|++|++|+.|..+..+
T Consensus 67 ~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~r~~~ 128 (147)
T 2kyh_A 67 ADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLIIS 128 (147)
T ss_dssp HHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999998 999999999998776542 2456666666666666665555444
No 29
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=93.69 E-value=0.064 Score=46.24 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=34.1
Q ss_pred chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107 111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP 155 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a 155 (161)
.++.+++|+++.+++..| ++..|.+..+|++..+|++.++++.+
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~ 605 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIIS 605 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHH
Confidence 357799999999999999 78999999999999999999988764
No 30
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=88.52 E-value=0.024 Score=27.49 Aligned_cols=23 Identities=74% Similarity=1.468 Sum_probs=15.9
Q ss_pred HHHHHhhhchhhHHHHHHHHHHH
Q psy6107 34 FVSIYLDRTWIGLRFLRALRLMT 56 (161)
Q Consensus 34 ~~~~~~~~~~~~~~~lr~lRl~r 56 (161)
++......++.++|++|.+|++-
T Consensus 3 fv~~yL~~~wlgLRFLRALRlm~ 25 (28)
T 2k44_A 3 FVSVYLNRSWLGLRFLRALRLIQ 25 (28)
T ss_dssp SSHHHHHHHHHHSTTCTTHHHHS
T ss_pred eeEeeeccchHHHHHHHHHHccc
Confidence 34445566677788888888764
No 31
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=86.39 E-value=0.58 Score=32.22 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy6107 49 LRALRLMTVPDILQYLNILKTSS 71 (161)
Q Consensus 49 lr~lRl~rl~r~~~~~~~l~~~~ 71 (161)
+|.+|++|+.|+.|..+..+...
T Consensus 106 lr~lRvlRllRv~Rllrl~r~~~ 128 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLRILLIIS 128 (147)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766544
No 32
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=84.61 E-value=2.2 Score=28.47 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=10.8
Q ss_pred hhhHHHHHhhhhHHHHH
Q psy6107 21 MYSFVDYFTIPPSFVSI 37 (161)
Q Consensus 21 ~~~iiDl~~~~P~~~~~ 37 (161)
....+|.+...=|.++.
T Consensus 38 ~l~~~d~~~~~iFt~E~ 54 (132)
T 1ors_C 38 RLYLVDLILVIILWADY 54 (132)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567777777665554
No 33
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=79.96 E-value=2.1 Score=35.29 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=33.7
Q ss_pred chhhhhHhhhhhheeccccc--cccccccchhHHHHHHHHHhhh
Q psy6107 111 LSYWTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLV 152 (161)
Q Consensus 111 ~~~~~slyf~~~TltTvGYG--Di~P~t~~~ri~~~~~~l~g~~ 152 (161)
++..+|++-+++..||.||. |+..-++..+.+.++.|++|.+
T Consensus 305 ~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~ 348 (494)
T 3pjz_A 305 DAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGC 348 (494)
T ss_dssp HHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCC
Confidence 57778888888888999996 5666667788888889988865
No 34
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=77.72 E-value=7.6 Score=27.84 Aligned_cols=17 Identities=12% Similarity=0.086 Sum_probs=9.1
Q ss_pred chhhHHHHHhhhhHHHH
Q psy6107 20 EMYSFVDYFTIPPSFVS 36 (161)
Q Consensus 20 ~~~~iiDl~~~~P~~~~ 36 (161)
.++.++|.++..=|.++
T Consensus 39 ~~l~~~d~~~~~iF~~e 55 (223)
T 1orq_C 39 VRLYLVDLILVIILWAD 55 (223)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455666665555444
No 35
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=66.05 E-value=5.7 Score=28.66 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=12.0
Q ss_pred hhhhhHhhhhhheecccccc
Q psy6107 112 SYWTCVYFLIVTMSTVGYGD 131 (161)
Q Consensus 112 ~~~~slyf~~~TltTvGYGD 131 (161)
+.++++..|..|+-.+--||
T Consensus 161 ~~F~~~~~a~~~lf~~~t~~ 180 (229)
T 4dxw_A 161 SRWGDLGISLITLFQVLTLS 180 (229)
T ss_dssp TTTSSHHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHHHHccC
Confidence 44566777776665555444
No 36
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=65.28 E-value=8.6 Score=31.66 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.8
Q ss_pred hhhhhHhhhhhheecccc--ccc----cccccchhHHHHHHHHHh
Q psy6107 112 SYWTCVYFLIVTMSTVGY--GDV----YCQTILGRTFLVFFLLVG 150 (161)
Q Consensus 112 ~~~~slyf~~~TltTvGY--GDi----~P~t~~~ri~~~~~~l~g 150 (161)
++.+|+.=++.+++|||- |.+ ..-++.+|++.++.|++|
T Consensus 423 ~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~G 467 (494)
T 3pjz_A 423 DELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFG 467 (494)
T ss_dssp CHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHH
Confidence 467888889999999984 432 234678999999999988
No 37
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=61.73 E-value=11 Score=18.09 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy6107 46 LRFLRALRLMTVPD 59 (161)
Q Consensus 46 ~~~lr~lRl~rl~r 59 (161)
++.+|.+|.+|-+|
T Consensus 6 l~~lrtlR~LRpLr 19 (28)
T 2lcm_A 6 IKSLRVLRVLRPLK 19 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcchH
Confidence 34444444444333
No 38
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=52.29 E-value=5.5 Score=29.79 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6107 47 RFLRALRLMTVPDILQYLNILK 68 (161)
Q Consensus 47 ~~lr~lRl~rl~r~~~~~~~l~ 68 (161)
+.+|++|++|++|+.+..+.++
T Consensus 114 ~~lr~~RilR~lrl~~~~~~l~ 135 (285)
T 3rvy_A 114 EILRVLRVLRLFRLVTAVPQMR 135 (285)
T ss_dssp THHHHHGGGGGGHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444443
No 39
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=51.58 E-value=11 Score=31.06 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy6107 49 LRALRLMTVPDILQYLNILKTSSSIR 74 (161)
Q Consensus 49 lr~lRl~rl~r~~~~~~~l~~~~~~~ 74 (161)
++.+|++|++|++|.++..+.....+
T Consensus 305 ~~~lrvlRllRvlRilkL~r~~~~l~ 330 (514)
T 2r9r_B 305 RRVVQIFRIMRILRIFKLSRHSKGLQ 330 (514)
T ss_dssp HHHHHHHHHHGGGGGGGGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45677777777777777776654443
Done!