RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6107
(161 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 76.6 bits (188), Expect = 4e-17
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLD-------RTWIGLRFLRALRLMT 56
+ +RF A K F + + +D I P +V+I+L + R ++ R+M
Sbjct: 256 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR 315
Query: 57 VPDI---------LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNN 107
+ I LQ L +S L L+ + + ++ E +F +
Sbjct: 316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPS 375
Query: 108 PQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
+W +V+M+TVGYGD+ TI G+ + G++
Sbjct: 376 IPDAFWWA-----VVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVL 415
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 73.4 bits (180), Expect = 3e-16
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 9/151 (5%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQY 63
+ + +D + + LD + A+ L+ +
Sbjct: 56 LAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDGSPD-WSLYCAVWLLKPLRDSTF 114
Query: 64 LNILKT---SSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
+L + + L + ++F V A +++E P +F + Q +W
Sbjct: 115 FPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWA----- 169
Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
+VT+ST GYGD Q+ GR ++ G+
Sbjct: 170 VVTLSTTGYGDTIPQSFAGRVLAGAVMMSGI 200
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 71.5 bits (176), Expect = 3e-16
Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQY 63
Y R + D ++ + + + + P+ + ++ GL R +RL+ IL
Sbjct: 56 YAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLI 113
Query: 64 LN--------ILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWT 115
++ I + IR L + L A I+++E S +
Sbjct: 114 ISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIK-----SVFD 168
Query: 116 CVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVG 150
+++ +VT +TVGYGDV T +G+ + +L G
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTG 203
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 57.5 bits (139), Expect = 1e-10
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 57 VPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTC 116
V I L + +++ + ++V + H +E S+
Sbjct: 2 VLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEG------------ESWTVS 49
Query: 117 VYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
+Y+ VT++TVGYGD T LG F V +++G+
Sbjct: 50 LYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIG 85
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 54.1 bits (130), Expect = 4e-10
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 46 LRFLRALRLMTVPDILQYLNILKTSSSIR---LAQLVSIFISVWLTAAGIIHLLENSGDP 102
+ + + L + +L + S++ + + V L + + L E
Sbjct: 24 MPPMLSGLLARLVKLLLG----RHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPG 79
Query: 103 FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
+ +W+ + T +TVGYGD+Y T+ GR V ++ G+
Sbjct: 80 AALISYPDALWWS-----VETATTVGYGDLYPVTLWGRCVAVVVMVAGI 123
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 53.4 bits (128), Expect = 1e-09
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 46 LRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF 105
+ RL+ + + ++ + L+ + + + V L + + L E +
Sbjct: 10 MLSGLLARLVKLL-LGRHGSALQWRA---AGAATVLLVIVLLAGSYLAVLAERGAPGAQL 65
Query: 106 NNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
+ +W+ + T +TVGYGD+Y T+ GR V ++ G+
Sbjct: 66 ITYPRALWWS-----VETATTVGYGDLYPVTLWGRLVAVVVMVAGI 106
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 52.3 bits (125), Expect = 2e-09
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 46 LRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF 105
L F+ L+ M L+ L + + +E
Sbjct: 5 LSFILTLKRM-------LKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEG------- 50
Query: 106 NNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
L +YF +VT++TVG G+ QT G+ F + ++ +G+
Sbjct: 51 -----LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGI 91
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 51.4 bits (123), Expect = 4e-09
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 75 LAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYC 134
+ + V L + + L E + + +W+ + T +TVGYGD+Y
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWS-----VETATTVGYGDLYP 62
Query: 135 QTILGRTFLVFFLLVGL 151
T+ GR V ++ G+
Sbjct: 63 VTLWGRLVAVVVMVAGI 79
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 50.1 bits (120), Expect = 5e-09
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
+ V A+ E + +W+ + T +TVGYGD Y
Sbjct: 7 EAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWS-----VETATTVGYGDRY 61
Query: 134 CQTILGRTFLVFFLLVGL 151
T GR + G+
Sbjct: 62 PVTEEGRKVAEQVMKAGI 79
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 50.5 bits (121), Expect = 6e-09
Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 46 LRFLRALRLMTVPDILQYLNILKTSSSIR---LAQLVSIFISVWLTAAGIIHLLENSGDP 102
+ + + L + +L + S++ + + V L + + L E
Sbjct: 1 MAPMLSGLLARLVKLLLG----RHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPG 56
Query: 103 FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
+ + +W T +TV YGD+Y T+ GR V ++ G+
Sbjct: 57 AQLITYPRALWWA-----CETATTVAYGDLYPVTLWGRLVAVVVMVAGI 100
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of
calcium-activated potassium channel subunit...;
membrane, micelle, solution structure; NMR {Synthetic}
Length = 28
Score = 47.3 bits (112), Expect = 1e-08
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 32 PSFVSIYLDRTWIGLRFLRALRLMTVPD 59
P FVS+YL+R+W+GLRFLRALRL+ +
Sbjct: 1 PVFVSVYLNRSWLGLRFLRALRLIQFSE 28
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 51.7 bits (123), Expect = 1e-08
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 63 YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
Y LK S + A L ++F+ A + L + + +F +
Sbjct: 52 YYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPP-----GFVGAFFFSVE 106
Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
T++TVGYGD++ QT+ + VG+
Sbjct: 107 TLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST 142
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 50.5 bits (120), Expect = 3e-08
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 12/118 (10%)
Query: 41 RTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSG 100
+G R L + + ++ L +F+ + A + L
Sbjct: 19 HGNLGSETSRYLSDL-------FTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPI 71
Query: 101 DPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
+ +F + T++TVGYGD++ QT+ + VG+ S
Sbjct: 72 ANQFPA-----GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALAT 124
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 45.8 bits (109), Expect = 1e-07
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 73 IRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDV 132
+ +++ + ++V + H +E S+ +Y+ VT++TVGYGD
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEG------------ESWTVSLYWTFVTIATVGYGDY 48
Query: 133 YCQTILGRTFLVFFLLVGL 151
T LG F +++G+
Sbjct: 49 SPHTPLGMYFTCTLIVLGI 67
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 44.5 bits (105), Expect = 9e-07
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 66 ILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMS 125
L+ L + I ++ +E L +YF +VT++
Sbjct: 15 CLRAWKDKEFQVLFVLTILTLISGTIFYSTVEG------------LRPIDALYFSVVTLT 62
Query: 126 TVGYGDVYCQTILGRTFLVFFLLVGL 151
TVG G+ QT G+ F + ++ +G+
Sbjct: 63 TVGAGNFSPQTDFGKIFTILYIFIGI 88
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 43.3 bits (102), Expect = 2e-06
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 70 SSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGY 129
+ L + I ++ +E L +YF +VT++TVGY
Sbjct: 2 AKDKEFQVLFVLTILTLISGTIFYSTVEG------------LRPIDALYFSVVTLTTVGY 49
Query: 130 GDVYCQTILGRTFLVFFLLVGL 151
GD QT G+ F + ++ +G+
Sbjct: 50 GDFSPQTDFGKIFTILYIFIGI 71
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 45.4 bits (107), Expect = 2e-06
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 63 YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
Y ++L S + + + +++ A + + S+ +F +
Sbjct: 38 YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPG-----SFTDAFFFSVQ 92
Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
TM+T+GYG + L T + L G++
Sbjct: 93 TMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 128
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 37.9 bits (87), Expect = 7e-04
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 92 IIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
+ + ++ + +F ++T+GYG+V +T GR F +F+ LVG+
Sbjct: 95 LGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGI 154
Score = 35.2 bits (80), Expect = 0.005
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 27 YFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVW 86
IP + + +G + + + ++ + L+ +
Sbjct: 151 LVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFV 210
Query: 87 LTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQT------ILGR 140
LT + +E+ S +YF+IVT++TVG+GD +
Sbjct: 211 LTPTFVFCYMEDW------------SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQ 258
Query: 141 TFLVFFLLVGL 151
+ F++L+GL
Sbjct: 259 PLVWFWILLGL 269
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 35.1 bits (80), Expect = 0.005
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 63 YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQ--------LSYW 114
+ ++ L V ++ WL I L+ + +
Sbjct: 34 FTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFV 93
Query: 115 TCVYFLIVTMSTVGYGDVY--CQTILGRTFLVFFLLVGLVSDPF 156
+ F I T +T+GYG + G L+ ++G + + F
Sbjct: 94 SAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAF 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.008
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 32/112 (28%)
Query: 8 FIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTV-PDILQY--- 63
IA +D S+ +F +++ +IG+R A ++ P IL+
Sbjct: 282 AIAETD---------SWESFFVSVRKAITVLF---FIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 64 ---------LNILKTSSSIRLAQLVSIFISV--WLTAAGIIHL-LENSGDPF 103
L+I S++ Q+ L A + + L N
Sbjct: 330 NNEGVPSPMLSI----SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 33.6 bits (76), Expect = 0.016
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 104 EFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
+ + + + ++F +ST GYG + G+ F + + ++G+
Sbjct: 85 QASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGI 132
Score = 33.3 bits (75), Expect = 0.023
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 109 QQLSYWTCVYFLIVTMSTVGYGDV-------YCQTILGRTFLVFFLLVGLV 152
++ YF +++ST+G GD L + + +LL+GL+
Sbjct: 198 DDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLI 248
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 33.2 bits (75), Expect = 0.025
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 63 YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLL---------ENSGDPFEFNNPQQLSY 113
+ + L F+ WL I L+ D F+ Q +
Sbjct: 36 FTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGF 95
Query: 114 WTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLVSDPF 156
F I T +T+GYG V + L +V +VG + D F
Sbjct: 96 VAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSF 140
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 29.5 bits (66), Expect = 0.29
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
Y R + D ++ + + + + P+ + ++ GL R +RL+ I
Sbjct: 66 WADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRI 123
Query: 61 LQYL 64
L +
Sbjct: 124 LLII 127
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 28.4 bits (63), Expect = 0.65
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
Y R + D ++ + + + + P+ + ++ GL R +RL+ I
Sbjct: 51 WADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRI 108
Query: 61 LQYL 64
L +
Sbjct: 109 LLII 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.0
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 36/109 (33%)
Query: 4 YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRA-LRLMTVP---- 58
YF I K E + F ++LD RFL +R +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTL---------FRMVFLD-----FRFLEQKIRHDSTAWNAS 517
Query: 59 ----DILQYLNILK---TSSSIRLAQLVSIFISVWLTAAGIIHLLENSG 100
+ LQ L K + + +LV+ I+ L
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVN----------AILDFLPKIE 556
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and
neural wiskott-aldrich syndrome...; verprolin,
polyproline, protein- protein complex; NMR {Homo
sapiens}
Length = 169
Score = 27.8 bits (61), Expect = 1.5
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 3 YYFIRFIAASDK--LWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRF 48
YF+R D LW E+Y+ Y + F + D + L F
Sbjct: 94 SYFLRIFDIKDGKLLWEQ-ELYNNFVYNSPRGYFHTFAGDTCQVALNF 140
>2z1p_A ACE, collagen adhesin protein; cell adhesion; 2.50A {Enterococcus
faecalis}
Length = 348
Score = 27.5 bits (60), Expect = 2.0
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 98 NSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDV 132
GD P L T ++ G G+V
Sbjct: 51 KPGDTITLTLPDALVGMTENDSSPRKINLNGLGEV 85
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome
protein interacting protein...; polyproline,
protein-protein complex; NMR {Rattus norvegicus} SCOP:
b.55.1.4
Length = 152
Score = 26.5 bits (58), Expect = 3.5
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 3 YYFIRFIAASDK--LWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRF 48
YF+R D LW E+Y+ Y + F + D + L F
Sbjct: 77 SYFLRIFDIKDGKLLWEQ-ELYNNFVYNSPRGYFHTFAGDTCQVALNF 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.147 0.470
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,587,725
Number of extensions: 144280
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 37
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.2 bits)