RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6107
(161 letters)
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 41.5 bits (97), Expect = 3e-06
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 75 LAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYC 134
+ + V L + + L E + +Y +++ + T +TVGYGD+Y
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLI-----TYPRALWWSVETATTVGYGDLYP 62
Query: 135 QTILGRTFLVFFLLVGLV 152
T+ GR V ++ G+
Sbjct: 63 VTLWGRCVAVVVMVAGIT 80
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 37.8 bits (88), Expect = 5e-05
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 78 LVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTI 137
++ + ++V + H +E S+ +Y+ VT++TVGYGD T
Sbjct: 5 ILLLVLAVIIYGTAGFHFIEG------------ESWTVSLYWTFVTIATVGYGDYSPSTP 52
Query: 138 LGRTFLVFFLLVGLV 152
LG F V +++G+
Sbjct: 53 LGMYFTVTLIVLGIG 67
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 36.5 bits (84), Expect = 2e-04
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 63 YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
Y ++L S + + + +++ A N + S+ +F +
Sbjct: 16 YHDLLTVSWPVFITLITGLYLVTNALFALAYLACG-----DVIENARPGSFTDAFFFSVQ 70
Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
TM+T+GYG + L T + L G++
Sbjct: 71 TMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 106
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 35.0 bits (80), Expect = 0.001
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 63 YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
Y LK S + A L ++F+ A + L + + +F +
Sbjct: 17 YYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPP-----GFVGAFFFSVE 71
Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
T++TVGYGD++ QT+ + VG+
Sbjct: 72 TLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST 107
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 24.8 bits (54), Expect = 1.7
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGY 129
R A ++ + + L A + +L G P Q ++Y +++ T +TVGY
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVGY 57
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 25.7 bits (56), Expect = 2.1
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
Y R + D ++ + + + P+ + ++ GL R +RL+ I
Sbjct: 51 WADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRI 108
Query: 61 LQYLN 65
L ++
Sbjct: 109 LLIIS 113
>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein
(SteCRISP) {Chinese green tree viper (Trimeresurus
stejnegeri) [TaxId: 39682]}
Length = 164
Score = 24.5 bits (52), Expect = 5.9
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV---TMSTVGYGDVYCQTIL 138
+ IIH + F++ ++ + +G YC +
Sbjct: 79 MSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSP 138
Query: 139 GRTFLV 144
F V
Sbjct: 139 YSYFFV 144
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 166
Score = 24.2 bits (52), Expect = 7.7
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFE 104
RL Q T GI+ LLE
Sbjct: 8 RLCQRAPRLRPC--TPRGIVTLLERYNIDTF 36
>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating
monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 154
Score = 24.2 bits (52), Expect = 7.9
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 6 IRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRF 48
R + +F+L+++ + +F + D + + +
Sbjct: 112 FRVGGETGSKYFVLQVH-----YGDISAFRDNHKDCSGVSVHL 149
>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of
HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Length = 266
Score = 24.2 bits (52), Expect = 8.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 56 TVPDILQYLNILKTSSSIRLAQLVS 80
T P L IL ++ LA++
Sbjct: 222 THPLAQLSLRILGVKTAQALAEIAV 246
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL)
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 163
Score = 23.8 bits (50), Expect = 9.7
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 3 YYFIRFIAASDKLWFMLEMYSFVDY---FTIPPSFVSIYLDRTWIG 45
+ K ++ DY FT P + +LD T IG
Sbjct: 101 NELKMYCEKYGKNPIEYALFGGEDYQLLFTHPKERWNPFLDMTEIG 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.334 0.147 0.470
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,136
Number of extensions: 28360
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 14
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.4 bits)