Query psy6108
Match_columns 131
No_of_seqs 134 out of 1884
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 17:47:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 5.2E-28 1.1E-32 144.5 15.3 128 2-130 12-156 (160)
2 KOG0027|consensus 99.9 2.9E-24 6.3E-29 129.9 14.8 127 4-130 2-149 (151)
3 PTZ00183 centrin; Provisional 99.9 2.5E-22 5.4E-27 122.2 15.4 129 2-130 9-154 (158)
4 KOG0028|consensus 99.9 2.1E-22 4.5E-27 118.5 13.1 129 2-130 25-170 (172)
5 PTZ00184 calmodulin; Provision 99.9 5.3E-22 1.2E-26 119.6 15.3 128 3-130 4-148 (149)
6 KOG0031|consensus 99.9 1.5E-20 3.3E-25 110.0 13.9 122 4-129 26-164 (171)
7 KOG0044|consensus 99.8 4.3E-18 9.2E-23 105.3 11.9 125 2-129 21-174 (193)
8 KOG0030|consensus 99.8 6.2E-18 1.3E-22 97.6 11.4 128 2-130 3-151 (152)
9 KOG0034|consensus 99.8 1.9E-17 4.1E-22 102.3 13.0 123 4-130 27-175 (187)
10 KOG0037|consensus 99.7 2E-15 4.4E-20 93.5 12.6 114 9-129 56-187 (221)
11 KOG0036|consensus 99.7 2E-15 4.2E-20 101.2 13.3 120 4-129 8-145 (463)
12 PLN02964 phosphatidylserine de 99.6 1.3E-14 2.8E-19 103.8 12.0 104 3-130 136-243 (644)
13 KOG0037|consensus 99.6 1.9E-14 4.2E-19 89.2 10.4 96 8-129 122-219 (221)
14 PF13499 EF-hand_7: EF-hand do 99.6 3.5E-14 7.6E-19 74.3 7.3 62 11-72 1-66 (66)
15 cd05022 S-100A13 S-100A13: S-1 99.5 4.9E-14 1.1E-18 77.5 7.5 70 6-75 4-76 (89)
16 cd05027 S-100B S-100B: S-100B 99.5 3.8E-13 8.2E-18 74.0 8.6 70 6-75 4-80 (88)
17 smart00027 EH Eps15 homology d 99.5 4.7E-13 1E-17 75.1 8.7 71 3-75 3-73 (96)
18 KOG0040|consensus 99.5 1.1E-12 2.3E-17 99.3 12.8 128 2-129 2245-2397(2399)
19 COG5126 FRQ1 Ca2+-binding prot 99.4 1.2E-12 2.6E-17 78.8 7.8 66 9-74 91-156 (160)
20 cd05029 S-100A6 S-100A6: S-100 99.4 2.4E-12 5.2E-17 70.9 8.3 71 5-75 5-80 (88)
21 cd00213 S-100 S-100: S-100 dom 99.4 3.5E-12 7.6E-17 70.4 7.6 70 6-75 4-80 (88)
22 cd05025 S-100A1 S-100A1: S-100 99.4 5.6E-12 1.2E-16 70.1 8.4 69 7-75 6-81 (92)
23 cd05026 S-100Z S-100Z: S-100Z 99.4 5.8E-12 1.3E-16 70.1 8.4 70 6-75 6-82 (93)
24 KOG0027|consensus 99.4 3.6E-12 7.8E-17 77.2 7.9 67 8-74 83-149 (151)
25 cd05031 S-100A10_like S-100A10 99.4 5.9E-12 1.3E-16 70.3 8.0 69 7-75 5-80 (94)
26 KOG0038|consensus 99.3 1.6E-11 3.6E-16 71.9 8.9 123 4-130 22-177 (189)
27 cd00052 EH Eps15 homology doma 99.3 1.2E-11 2.6E-16 64.7 6.7 61 13-75 2-62 (67)
28 PF13499 EF-hand_7: EF-hand do 99.3 1.9E-11 4.2E-16 63.8 7.1 65 48-128 2-66 (66)
29 PF13833 EF-hand_8: EF-hand do 99.3 1.5E-11 3.1E-16 61.8 6.3 52 23-74 1-53 (54)
30 KOG4223|consensus 99.3 4.2E-11 9.2E-16 78.5 9.4 120 7-126 160-301 (325)
31 cd05023 S-100A11 S-100A11: S-1 99.3 6.1E-11 1.3E-15 65.4 8.4 70 6-75 5-81 (89)
32 cd00051 EFh EF-hand, calcium b 99.3 3E-11 6.6E-16 61.8 6.7 61 12-72 2-62 (63)
33 cd05022 S-100A13 S-100A13: S-1 99.3 2.6E-11 5.6E-16 66.7 6.4 64 47-130 9-75 (89)
34 cd00252 SPARC_EC SPARC_EC; ext 99.3 5.7E-11 1.2E-15 68.4 7.5 65 5-73 43-107 (116)
35 KOG0377|consensus 99.2 7.1E-10 1.5E-14 75.8 11.3 118 10-129 464-614 (631)
36 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.6E-15 57.9 6.2 52 59-130 1-53 (54)
37 KOG4223|consensus 99.2 4E-10 8.8E-15 74.0 8.9 124 7-130 74-228 (325)
38 PF14658 EF-hand_9: EF-hand do 99.2 2.8E-10 6.2E-15 58.4 6.5 61 14-74 2-64 (66)
39 cd05027 S-100B S-100B: S-100B 99.2 3.9E-10 8.4E-15 62.1 7.5 68 47-129 9-78 (88)
40 PTZ00183 centrin; Provisional 99.2 3.1E-09 6.8E-14 64.5 12.3 99 11-110 54-154 (158)
41 KOG0041|consensus 99.1 2.7E-10 5.9E-15 70.2 6.9 73 4-76 93-165 (244)
42 cd05030 calgranulins Calgranul 99.1 4.3E-10 9.4E-15 62.0 7.1 70 6-75 4-80 (88)
43 PTZ00184 calmodulin; Provision 99.1 6E-10 1.3E-14 66.9 8.1 98 10-108 47-146 (149)
44 KOG0044|consensus 99.1 7.5E-10 1.6E-14 68.9 8.5 97 11-107 65-172 (193)
45 KOG2643|consensus 99.1 5E-10 1.1E-14 76.2 7.3 119 10-130 318-453 (489)
46 cd05029 S-100A6 S-100A6: S-100 99.1 9.9E-10 2.2E-14 60.5 7.3 66 48-130 12-79 (88)
47 cd05031 S-100A10_like S-100A10 99.0 1.5E-09 3.3E-14 60.6 6.9 70 46-130 8-79 (94)
48 KOG0028|consensus 99.0 2.7E-09 5.7E-14 63.6 7.4 100 10-110 69-170 (172)
49 PF12763 EF-hand_4: Cytoskelet 99.0 2.4E-09 5.3E-14 60.5 6.7 70 3-75 3-72 (104)
50 cd05026 S-100Z S-100Z: S-100Z 99.0 3.6E-09 7.8E-14 58.9 7.1 69 47-130 11-81 (93)
51 smart00027 EH Eps15 homology d 99.0 6.5E-09 1.4E-13 58.2 7.6 63 46-130 10-72 (96)
52 cd00052 EH Eps15 homology doma 99.0 4.4E-09 9.6E-14 54.8 6.5 59 49-129 2-60 (67)
53 cd05025 S-100A1 S-100A1: S-100 99.0 5.9E-09 1.3E-13 58.0 7.3 70 46-130 9-80 (92)
54 cd00051 EFh EF-hand, calcium b 99.0 8.3E-09 1.8E-13 52.5 7.4 61 48-128 2-62 (63)
55 cd00213 S-100 S-100: S-100 dom 98.9 6.2E-09 1.3E-13 57.4 6.5 70 46-130 8-79 (88)
56 KOG0034|consensus 98.9 8.9E-09 1.9E-13 64.0 7.6 66 10-75 104-176 (187)
57 cd05024 S-100A10 S-100A10: A s 98.9 3.5E-08 7.7E-13 54.1 8.2 69 6-75 4-77 (91)
58 PF00036 EF-hand_1: EF hand; 98.9 5.5E-09 1.2E-13 45.4 3.5 28 103-130 1-28 (29)
59 cd05023 S-100A11 S-100A11: S-1 98.8 2.5E-08 5.4E-13 55.0 6.8 68 48-130 11-80 (89)
60 PF00036 EF-hand_1: EF hand; 98.8 1.3E-08 2.9E-13 44.1 3.9 28 11-38 1-28 (29)
61 PLN02964 phosphatidylserine de 98.8 6.2E-08 1.3E-12 70.2 9.2 72 4-75 173-244 (644)
62 KOG0031|consensus 98.8 8.5E-08 1.9E-12 57.0 7.5 65 10-74 101-165 (171)
63 KOG0030|consensus 98.8 6.2E-08 1.3E-12 56.6 6.6 65 8-73 86-150 (152)
64 cd05030 calgranulins Calgranul 98.7 1E-07 2.2E-12 52.5 6.2 64 48-130 10-79 (88)
65 KOG0036|consensus 98.7 2.5E-07 5.4E-12 63.1 8.8 80 8-92 80-159 (463)
66 cd00252 SPARC_EC SPARC_EC; ext 98.7 1.9E-07 4.2E-12 53.9 7.3 63 43-129 45-107 (116)
67 PF13405 EF-hand_6: EF-hand do 98.7 5.9E-08 1.3E-12 42.9 3.9 30 11-40 1-31 (31)
68 KOG4251|consensus 98.6 1.6E-07 3.5E-12 60.1 6.4 120 8-128 99-262 (362)
69 PF14658 EF-hand_9: EF-hand do 98.6 3.3E-07 7.2E-12 47.1 6.2 61 50-130 2-64 (66)
70 KOG0377|consensus 98.6 3.1E-07 6.7E-12 63.3 7.4 66 10-75 547-616 (631)
71 PF14788 EF-hand_10: EF hand; 98.6 3.2E-07 6.9E-12 44.6 5.2 49 26-74 1-49 (51)
72 KOG0751|consensus 98.6 1.8E-06 3.8E-11 60.4 10.5 102 6-110 32-136 (694)
73 KOG2562|consensus 98.5 1.3E-06 2.7E-11 60.5 8.7 115 8-126 276-420 (493)
74 PF13202 EF-hand_5: EF hand; P 98.5 4.1E-07 8.8E-12 38.0 3.4 25 104-128 1-25 (25)
75 cd05024 S-100A10 S-100A10: A s 98.4 6.5E-06 1.4E-10 45.3 8.5 67 48-130 10-76 (91)
76 KOG0046|consensus 98.4 3E-06 6.6E-11 59.5 8.1 72 3-75 12-86 (627)
77 PF13202 EF-hand_5: EF hand; P 98.3 1.1E-06 2.3E-11 36.7 3.3 24 12-35 1-24 (25)
78 PRK12309 transaldolase/EF-hand 98.3 2.5E-06 5.4E-11 59.0 6.2 54 8-74 332-385 (391)
79 PF10591 SPARC_Ca_bdg: Secrete 98.3 2.3E-07 5E-12 53.4 0.6 62 8-71 52-113 (113)
80 PRK12309 transaldolase/EF-hand 98.2 7.9E-06 1.7E-10 56.5 7.5 54 77-130 328-385 (391)
81 KOG0041|consensus 98.2 6.4E-06 1.4E-10 51.3 5.9 65 46-130 99-163 (244)
82 KOG0169|consensus 98.2 3.1E-05 6.7E-10 56.8 10.0 103 4-110 130-232 (746)
83 PF13405 EF-hand_6: EF-hand do 98.1 5.2E-06 1.1E-10 36.5 3.5 27 103-129 1-27 (31)
84 KOG1029|consensus 98.1 0.00012 2.7E-09 54.0 10.8 69 4-75 10-78 (1118)
85 KOG2643|consensus 98.1 3.9E-05 8.4E-10 53.1 7.9 113 11-129 234-383 (489)
86 PF12763 EF-hand_4: Cytoskelet 98.0 7.3E-05 1.6E-09 42.4 7.0 62 45-129 9-70 (104)
87 KOG0038|consensus 97.9 4.9E-05 1.1E-09 45.1 5.4 59 15-73 113-176 (189)
88 KOG0040|consensus 97.9 4.8E-05 1E-09 59.7 6.5 65 46-130 2253-2324(2399)
89 KOG4251|consensus 97.8 0.00019 4.1E-09 46.4 7.4 116 13-128 143-307 (362)
90 PF14788 EF-hand_10: EF hand; 97.7 0.00022 4.7E-09 34.8 5.3 34 96-129 15-48 (51)
91 smart00054 EFh EF-hand, calciu 97.7 7.1E-05 1.5E-09 31.3 3.1 28 103-130 1-28 (29)
92 smart00054 EFh EF-hand, calciu 97.6 9.5E-05 2.1E-09 30.9 3.1 27 12-38 2-28 (29)
93 KOG4065|consensus 97.6 0.00062 1.3E-08 38.9 6.3 67 3-71 62-142 (144)
94 KOG1955|consensus 97.6 0.00038 8.3E-09 49.2 6.6 72 3-76 224-295 (737)
95 PF09279 EF-hand_like: Phospho 97.6 0.00052 1.1E-08 37.2 5.9 65 11-76 1-71 (83)
96 KOG4666|consensus 97.5 0.00036 7.9E-09 46.8 5.9 104 22-129 239-358 (412)
97 PF09279 EF-hand_like: Phospho 97.5 0.00043 9.3E-09 37.5 5.2 65 47-130 1-69 (83)
98 KOG1707|consensus 97.5 0.0017 3.7E-08 46.9 9.0 73 3-75 188-266 (625)
99 KOG0751|consensus 97.4 0.0013 2.7E-08 46.7 7.3 55 19-75 83-137 (694)
100 KOG0035|consensus 97.3 0.0022 4.8E-08 48.5 8.3 101 4-104 741-846 (890)
101 KOG0042|consensus 97.3 0.00063 1.4E-08 48.9 5.3 76 2-77 585-660 (680)
102 KOG1029|consensus 97.2 0.00078 1.7E-08 50.0 5.0 67 6-74 191-257 (1118)
103 KOG2562|consensus 97.2 0.0055 1.2E-07 43.1 8.5 116 14-129 178-342 (493)
104 PF10591 SPARC_Ca_bdg: Secrete 96.9 0.0014 3.1E-08 37.8 3.3 65 40-126 48-112 (113)
105 PF05517 p25-alpha: p25-alpha 96.5 0.031 6.7E-07 34.1 7.3 65 12-76 4-71 (154)
106 KOG4065|consensus 96.5 0.021 4.6E-07 32.8 6.0 73 43-128 63-143 (144)
107 KOG0046|consensus 96.5 0.016 3.4E-07 41.7 6.6 63 50-130 23-85 (627)
108 PF05042 Caleosin: Caleosin re 96.4 0.033 7.2E-07 34.3 6.7 113 11-130 8-124 (174)
109 KOG3555|consensus 96.1 0.014 2.9E-07 39.8 4.3 67 5-75 245-311 (434)
110 KOG4578|consensus 96.1 0.006 1.3E-07 41.2 2.6 61 15-75 338-399 (421)
111 PLN02952 phosphoinositide phos 95.8 0.21 4.6E-06 37.1 9.7 54 23-77 13-68 (599)
112 KOG0998|consensus 95.3 0.0096 2.1E-07 45.6 1.7 70 4-75 277-346 (847)
113 KOG1707|consensus 94.9 0.053 1.2E-06 39.6 4.3 71 2-75 307-378 (625)
114 KOG4666|consensus 94.9 0.038 8.3E-07 37.5 3.4 99 10-110 259-359 (412)
115 KOG3866|consensus 94.6 0.25 5.4E-06 33.6 6.4 89 28-128 225-322 (442)
116 KOG0169|consensus 94.6 0.75 1.6E-05 34.9 9.4 98 11-130 173-274 (746)
117 KOG2243|consensus 94.5 0.1 2.2E-06 42.3 5.1 60 15-75 4062-4121(5019)
118 KOG0998|consensus 94.1 0.073 1.6E-06 41.0 3.6 124 4-129 5-189 (847)
119 KOG3866|consensus 94.0 0.13 2.9E-06 34.8 4.4 63 14-76 248-326 (442)
120 KOG1265|consensus 93.9 0.71 1.5E-05 35.9 8.2 87 31-130 209-299 (1189)
121 KOG1955|consensus 93.6 0.33 7.1E-06 35.1 5.9 42 83-129 251-292 (737)
122 KOG3555|consensus 93.6 0.21 4.6E-06 34.3 4.7 94 11-128 212-308 (434)
123 PF05517 p25-alpha: p25-alpha 92.8 0.57 1.2E-05 28.6 5.4 33 97-129 36-68 (154)
124 PF05042 Caleosin: Caleosin re 92.7 0.86 1.9E-05 28.3 6.1 62 10-72 96-164 (174)
125 KOG2301|consensus 92.3 0.096 2.1E-06 42.9 2.1 73 3-76 1410-1486(1592)
126 PF09069 EF-hand_3: EF-hand; 92.3 1.1 2.4E-05 24.7 7.5 63 10-75 3-76 (90)
127 KOG4347|consensus 92.2 0.25 5.4E-06 36.7 3.9 96 2-98 496-606 (671)
128 KOG4347|consensus 92.2 0.28 6E-06 36.4 4.0 56 12-68 557-612 (671)
129 PF14513 DAG_kinase_N: Diacylg 91.6 0.56 1.2E-05 28.1 4.3 69 25-95 6-81 (138)
130 PF08976 DUF1880: Domain of un 90.4 0.33 7.2E-06 28.0 2.4 32 43-74 4-35 (118)
131 PF08726 EFhand_Ca_insen: Ca2+ 90.3 0.51 1.1E-05 24.7 2.9 27 10-37 6-32 (69)
132 PLN02952 phosphoinositide phos 89.3 4.4 9.5E-05 30.5 8.0 72 59-130 13-110 (599)
133 KOG2871|consensus 89.3 0.55 1.2E-05 32.7 3.3 65 9-73 308-373 (449)
134 PLN02228 Phosphoinositide phos 88.9 4.2 9.1E-05 30.4 7.6 50 41-92 19-69 (567)
135 KOG4004|consensus 87.7 0.3 6.5E-06 31.0 1.2 58 16-75 193-251 (259)
136 PF02761 Cbl_N2: CBL proto-onc 86.5 3.8 8.1E-05 22.4 7.3 68 3-75 3-71 (85)
137 KOG0042|consensus 86.2 2.1 4.6E-05 31.8 4.8 35 96-130 623-657 (680)
138 PLN02222 phosphoinositide phos 85.9 4.8 0.00011 30.1 6.5 63 11-75 26-91 (581)
139 PF01023 S_100: S-100/ICaBP ty 85.7 2.6 5.7E-05 19.8 4.4 32 7-38 3-36 (44)
140 PLN02222 phosphoinositide phos 85.1 6.5 0.00014 29.5 6.9 68 43-130 22-90 (581)
141 PF00046 Homeobox: Homeobox do 85.1 3.2 6.9E-05 20.3 6.0 45 2-53 5-49 (57)
142 KOG2243|consensus 84.9 3 6.4E-05 34.8 5.3 57 51-128 4062-4118(5019)
143 PLN02228 Phosphoinositide phos 83.7 9.1 0.0002 28.7 7.1 66 5-75 22-93 (567)
144 KOG3449|consensus 83.4 6.5 0.00014 22.5 5.9 54 13-71 4-57 (112)
145 KOG4578|consensus 82.8 1.1 2.4E-05 30.8 2.1 63 48-129 335-397 (421)
146 PLN02230 phosphoinositide phos 82.3 12 0.00025 28.4 7.2 33 43-76 26-58 (598)
147 cd07313 terB_like_2 tellurium 81.9 4.2 9E-05 22.7 4.0 52 24-75 13-66 (104)
148 PLN02230 phosphoinositide phos 81.8 11 0.00024 28.4 7.0 65 10-75 29-103 (598)
149 PF00404 Dockerin_1: Dockerin 81.8 1.9 4E-05 16.9 1.8 16 112-127 1-16 (21)
150 cd00086 homeodomain Homeodomai 80.4 5.2 0.00011 19.5 6.1 46 2-54 5-50 (59)
151 KOG1264|consensus 78.9 8 0.00017 30.4 5.5 72 3-75 136-209 (1267)
152 KOG1265|consensus 78.9 25 0.00054 28.1 8.0 66 11-76 222-301 (1189)
153 KOG1954|consensus 78.9 6.9 0.00015 27.9 4.9 57 12-71 446-502 (532)
154 PF11116 DUF2624: Protein of u 78.5 8.9 0.00019 21.0 5.8 35 25-59 13-47 (85)
155 PF05099 TerB: Tellurite resis 77.1 2.1 4.5E-05 25.3 1.9 93 23-115 36-132 (140)
156 TIGR01639 P_fal_TIGR01639 Plas 76.0 7.8 0.00017 19.7 3.5 32 24-55 7-38 (61)
157 PF08414 NADPH_Ox: Respiratory 75.6 12 0.00026 21.1 6.0 63 44-112 28-94 (100)
158 PF12174 RST: RCD1-SRO-TAF4 (R 75.5 4.3 9.4E-05 21.3 2.6 50 25-77 7-56 (70)
159 PLN02508 magnesium-protoporphy 75.5 8.6 0.00019 26.6 4.5 84 5-95 39-122 (357)
160 PF09068 EF-hand_2: EF hand; 75.3 14 0.00031 21.8 6.4 71 4-74 35-125 (127)
161 KOG4070|consensus 74.4 9.8 0.00021 23.3 4.1 85 11-95 13-110 (180)
162 CHL00185 ycf59 magnesium-proto 74.0 7.1 0.00015 27.0 3.8 86 3-95 37-122 (351)
163 PF07308 DUF1456: Protein of u 73.1 11 0.00025 19.6 5.2 45 27-71 14-58 (68)
164 KOG0035|consensus 72.4 17 0.00036 28.9 5.8 68 46-129 747-815 (890)
165 PRK13654 magnesium-protoporphy 71.7 8.4 0.00018 26.7 3.8 85 4-95 42-126 (355)
166 cd01047 ACSF Aerobic Cyclase S 71.7 11 0.00024 25.8 4.3 85 4-95 22-106 (323)
167 PF08812 YtxC: YtxC-like famil 71.3 1.2 2.6E-05 28.9 -0.2 35 88-125 148-182 (221)
168 PF03672 UPF0154: Uncharacteri 71.1 13 0.00027 19.2 3.5 31 25-55 30-60 (64)
169 PF08349 DUF1722: Protein of u 70.4 15 0.00032 21.3 4.3 45 82-129 52-96 (117)
170 COG4103 Uncharacterized protei 70.4 21 0.00046 21.6 5.6 81 14-97 34-117 (148)
171 TIGR02029 AcsF magnesium-proto 70.4 9.1 0.0002 26.4 3.7 85 4-95 32-116 (337)
172 PF13551 HTH_29: Winged helix- 69.9 17 0.00037 20.2 6.2 50 4-53 58-109 (112)
173 PHA02105 hypothetical protein 68.1 14 0.0003 18.5 3.3 50 26-75 4-58 (68)
174 PF08707 PriCT_2: Primase C te 67.6 17 0.00036 19.3 6.5 74 49-126 3-76 (78)
175 PF12486 DUF3702: ImpA domain 67.5 11 0.00024 23.0 3.4 32 7-38 66-97 (148)
176 PRK04387 hypothetical protein; 67.1 20 0.00042 19.9 4.3 67 2-69 9-76 (90)
177 PF01325 Fe_dep_repress: Iron 66.7 7.8 0.00017 19.5 2.3 54 4-66 2-55 (60)
178 PRK00523 hypothetical protein; 66.6 17 0.00037 19.2 3.5 31 25-55 38-68 (72)
179 cd07176 terB tellurite resista 66.2 6.9 0.00015 21.9 2.3 72 24-96 16-92 (111)
180 PF09336 Vps4_C: Vps4 C termin 65.3 10 0.00022 19.3 2.5 26 26-51 29-54 (62)
181 TIGR01565 homeo_ZF_HD homeobox 65.2 16 0.00036 18.4 4.6 34 2-40 6-43 (58)
182 PLN02223 phosphoinositide phos 64.9 39 0.00086 25.3 6.2 65 10-75 16-93 (537)
183 KOG0843|consensus 64.7 31 0.00068 21.8 5.0 45 2-53 107-151 (197)
184 PF07199 DUF1411: Protein of u 64.7 34 0.00073 21.9 5.1 21 49-71 142-162 (194)
185 PF05256 UPF0223: Uncharacteri 63.3 20 0.00044 19.8 3.6 65 3-68 10-75 (88)
186 PF01885 PTS_2-RNA: RNA 2'-pho 63.2 22 0.00048 22.5 4.3 37 20-56 26-62 (186)
187 PF02761 Cbl_N2: CBL proto-onc 61.7 25 0.00054 19.3 5.9 64 43-127 4-67 (85)
188 COG5069 SAC6 Ca2+-binding acti 61.2 12 0.00025 27.6 3.0 122 4-129 479-610 (612)
189 PF08339 RTX_C: RTX C-terminal 60.8 14 0.00029 22.5 2.9 59 58-126 27-85 (145)
190 TIGR01321 TrpR trp operon repr 60.7 28 0.00061 19.5 4.7 52 65-126 9-63 (94)
191 PF07879 PHB_acc_N: PHB/PHA ac 60.2 10 0.00023 19.5 2.0 22 17-38 10-31 (64)
192 KOG0506|consensus 60.0 30 0.00066 25.5 4.9 60 14-73 90-157 (622)
193 TIGR02933 nifM_nitrog nitrogen 59.4 50 0.0011 22.0 9.7 61 4-73 19-83 (256)
194 KOG1785|consensus 59.3 65 0.0014 23.3 7.9 85 24-112 188-276 (563)
195 PF14297 DUF4373: Domain of un 59.2 8.8 0.00019 20.8 1.8 30 2-31 56-85 (87)
196 PRK00819 RNA 2'-phosphotransfe 58.0 44 0.00095 21.1 4.9 36 21-56 28-63 (179)
197 PLN02223 phosphoinositide phos 57.5 70 0.0015 24.1 6.4 30 42-72 12-41 (537)
198 PF07492 Trehalase_Ca-bi: Neut 57.0 3.3 7.1E-05 17.8 -0.1 19 105-123 2-20 (30)
199 PF09373 PMBR: Pseudomurein-bi 56.7 9.2 0.0002 16.7 1.3 15 116-130 2-16 (33)
200 PRK01844 hypothetical protein; 56.3 29 0.00063 18.3 3.4 31 25-55 37-67 (72)
201 TIGR03573 WbuX N-acetyl sugar 55.6 42 0.0009 23.5 5.0 66 31-108 275-342 (343)
202 PF05872 DUF853: Bacterial pro 54.8 29 0.00062 25.6 4.1 38 2-39 120-157 (502)
203 KOG4004|consensus 54.6 11 0.00023 24.3 1.8 27 102-128 222-248 (259)
204 PF14513 DAG_kinase_N: Diacylg 54.4 46 0.001 20.1 5.0 35 24-58 46-81 (138)
205 COG3763 Uncharacterized protei 54.2 32 0.00068 18.1 3.4 31 25-55 37-67 (71)
206 PF09743 DUF2042: Uncharacteri 53.1 70 0.0015 21.7 6.8 63 59-127 67-139 (272)
207 KOG0113|consensus 52.7 54 0.0012 22.6 4.9 68 28-95 61-128 (335)
208 smart00389 HOX Homeodomain. DN 52.1 27 0.00058 16.7 5.8 45 2-53 5-49 (56)
209 TIGR02834 spo_ytxC putative sp 51.7 6 0.00013 26.7 0.4 58 65-125 175-238 (276)
210 COG4476 Uncharacterized protei 51.6 40 0.00086 18.5 4.1 63 2-65 9-72 (90)
211 KOG4301|consensus 51.1 87 0.0019 22.2 6.2 58 17-75 117-174 (434)
212 PF10281 Ish1: Putative stress 51.0 24 0.00052 15.8 3.7 33 98-130 3-36 (38)
213 PTZ00373 60S Acidic ribosomal 50.4 49 0.0011 19.2 6.0 51 15-70 8-58 (112)
214 PF03979 Sigma70_r1_1: Sigma-7 49.9 18 0.0004 19.4 2.1 31 24-56 19-49 (82)
215 KOG0039|consensus 49.6 89 0.0019 24.1 6.2 87 24-129 2-88 (646)
216 PRK14074 rpsF 30S ribosomal pr 49.6 40 0.00087 22.4 3.8 70 3-75 13-82 (257)
217 PF12419 DUF3670: SNF2 Helicas 47.8 48 0.001 19.9 3.8 49 23-71 80-138 (141)
218 PRK01381 Trp operon repressor; 47.8 51 0.0011 18.7 4.7 52 65-126 9-63 (99)
219 PF08461 HTH_12: Ribonuclease 47.6 30 0.00065 17.8 2.6 37 23-59 10-46 (66)
220 PHA02827 hypothetical protein; 44.7 38 0.00083 20.7 3.0 48 81-128 38-86 (150)
221 KOG0488|consensus 44.2 83 0.0018 21.8 4.9 46 2-54 177-222 (309)
222 TIGR01848 PHA_reg_PhaR polyhyd 44.2 62 0.0013 18.6 4.9 48 17-64 10-67 (107)
223 TIGR02574 stabl_TIGR02574 puta 44.2 44 0.00096 16.9 4.2 22 3-24 2-24 (63)
224 PF13623 SurA_N_2: SurA N-term 44.0 73 0.0016 19.3 5.2 33 96-128 103-145 (145)
225 PHA02773 hypothetical protein; 42.2 35 0.00076 18.9 2.3 26 2-27 19-44 (112)
226 PRK09462 fur ferric uptake reg 42.0 77 0.0017 19.0 4.3 49 3-55 14-62 (148)
227 PF08672 APC2: Anaphase promot 41.6 50 0.0011 16.7 3.4 33 4-38 12-44 (60)
228 PF03250 Tropomodulin: Tropomo 41.5 35 0.00076 20.8 2.5 21 3-23 23-43 (147)
229 PLN03083 E3 UFM1-protein ligas 40.3 1.2E+02 0.0025 24.3 5.5 62 60-127 72-143 (803)
230 cd05833 Ribosomal_P2 Ribosomal 38.2 81 0.0018 18.2 4.8 55 15-74 6-60 (109)
231 KOG0493|consensus 37.4 1E+02 0.0022 20.9 4.3 45 2-53 251-295 (342)
232 PF02037 SAP: SAP domain; Int 37.2 43 0.00092 14.7 2.0 18 26-43 3-20 (35)
233 PRK09430 djlA Dna-J like membr 37.1 1.3E+02 0.0029 20.3 7.1 51 22-76 67-122 (267)
234 PF08730 Rad33: Rad33; InterP 37.1 1.1E+02 0.0023 19.3 9.6 40 3-43 7-46 (170)
235 PRK14981 DNA-directed RNA poly 36.5 85 0.0018 18.1 3.5 10 45-54 81-90 (112)
236 COG5562 Phage envelope protein 35.4 31 0.00066 20.7 1.6 24 107-130 77-100 (137)
237 COG2818 Tag 3-methyladenine DN 34.1 37 0.0008 21.6 1.9 43 8-50 53-95 (188)
238 smart00513 SAP Putative DNA-bi 34.1 48 0.001 14.4 2.4 18 26-43 3-20 (35)
239 PF10437 Lip_prot_lig_C: Bacte 33.5 50 0.0011 17.7 2.2 33 96-128 53-86 (86)
240 PF12238 MSA-2c: Merozoite sur 33.5 1.4E+02 0.003 19.5 4.7 49 45-93 83-132 (205)
241 PF13331 DUF4093: Domain of un 32.9 90 0.0019 17.1 3.3 32 3-34 6-38 (87)
242 COG3013 Uncharacterized conser 32.9 1.2E+02 0.0026 18.6 3.8 13 96-108 154-166 (168)
243 PF11363 DUF3164: Protein of u 32.7 1.4E+02 0.003 19.2 6.2 55 34-92 107-161 (195)
244 PF04876 Tenui_NCP: Tenuivirus 32.3 1.2E+02 0.0027 18.6 5.1 54 48-109 85-138 (175)
245 PF13720 Acetyltransf_11: Udp 31.5 92 0.002 16.8 4.1 33 3-38 27-59 (83)
246 COG1321 TroR Mn-dependent tran 31.3 1.2E+02 0.0026 18.6 3.8 56 3-67 3-58 (154)
247 PF09883 DUF2110: Uncharacteri 31.1 93 0.002 20.4 3.3 44 2-45 142-186 (225)
248 PF14842 FliG_N: FliG N-termin 30.5 1E+02 0.0022 17.5 3.2 10 27-36 48-57 (108)
249 PRK11639 zinc uptake transcrip 30.5 1.4E+02 0.003 18.5 5.4 32 24-55 39-70 (169)
250 PF02758 PYRIN: PAAD/DAPIN/Pyr 30.4 77 0.0017 17.0 2.6 32 3-34 11-42 (83)
251 PF05383 La: La domain; Inter 30.2 35 0.00077 17.2 1.2 20 107-126 20-39 (61)
252 COG0735 Fur Fe2+/Zn2+ uptake r 30.2 1.3E+02 0.0028 18.1 5.5 31 25-55 35-65 (145)
253 TIGR02698 CopY_TcrY copper tra 30.2 1.2E+02 0.0026 17.9 9.2 103 4-117 2-120 (130)
254 KOG2525|consensus 30.1 1.4E+02 0.0031 22.3 4.4 104 22-128 46-159 (496)
255 KOG4286|consensus 29.3 48 0.001 26.1 2.1 50 13-62 473-522 (966)
256 KOG1954|consensus 29.1 69 0.0015 23.2 2.7 31 96-126 471-501 (532)
257 PF11848 DUF3368: Domain of un 29.1 75 0.0016 15.0 3.6 32 24-55 15-47 (48)
258 PF10841 DUF2644: Protein of u 29.0 70 0.0015 16.2 2.0 17 113-129 5-21 (60)
259 PLN00138 large subunit ribosom 28.8 1.3E+02 0.0027 17.5 4.7 50 16-70 7-56 (113)
260 PF09454 Vps23_core: Vps23 cor 28.3 50 0.0011 17.0 1.5 15 116-130 37-51 (65)
261 cd04790 HTH_Cfa-like_unk Helix 27.8 1.6E+02 0.0034 18.4 4.9 37 22-58 111-148 (172)
262 cd07909 YciF YciF bacterial st 27.8 66 0.0014 19.6 2.2 23 5-27 45-67 (147)
263 PF04433 SWIRM: SWIRM domain; 27.3 39 0.00083 18.2 1.1 41 51-96 42-82 (86)
264 cd07316 terB_like_DjlA N-termi 26.8 1.2E+02 0.0026 16.6 5.2 52 24-75 13-65 (106)
265 PF08671 SinI: Anti-repressor 26.6 68 0.0015 13.7 1.8 10 3-12 16-25 (30)
266 PF12983 DUF3867: Protein of u 25.6 1.8E+02 0.004 18.4 5.1 87 26-116 3-90 (186)
267 PF09371 Tex_N: Tex-like prote 25.5 52 0.0011 21.1 1.6 38 2-39 5-51 (193)
268 PF04022 Staphylcoagulse: Stap 25.4 30 0.00066 14.1 0.3 9 113-121 17-25 (27)
269 PF02885 Glycos_trans_3N: Glyc 25.3 1.1E+02 0.0023 15.5 3.5 16 40-55 12-27 (66)
270 KOG4286|consensus 25.0 1.4E+02 0.003 23.8 3.8 50 49-99 473-522 (966)
271 PF07813 LTXXQ: LTXXQ motif fa 24.6 1.3E+02 0.0028 16.2 5.7 26 1-26 12-37 (100)
272 TIGR02878 spore_ypjB sporulati 24.4 1.5E+02 0.0033 19.7 3.5 52 2-58 143-194 (233)
273 TIGR03830 CxxCG_CxxCG_HTH puta 24.4 1.5E+02 0.0033 16.9 4.9 45 5-51 43-87 (127)
274 PF13624 SurA_N_3: SurA N-term 24.2 84 0.0018 18.7 2.3 16 36-51 93-108 (154)
275 PF07862 Nif11: Nitrogen fixat 23.9 96 0.0021 14.5 2.8 21 28-48 28-48 (49)
276 PF09127 Leuk-A4-hydro_C: Leuk 23.9 1.8E+02 0.0038 17.5 5.1 48 4-53 49-96 (143)
277 cd04411 Ribosomal_P1_P2_L12p R 23.8 1.5E+02 0.0033 16.9 5.3 44 27-75 17-60 (105)
278 PF11593 Med3: Mediator comple 23.8 2.8E+02 0.0062 19.9 5.4 51 25-76 6-56 (379)
279 PRK10945 gene expression modul 23.5 1.3E+02 0.0028 15.9 5.2 42 64-112 7-48 (72)
280 cd08032 LARP_7 La RNA-binding 23.5 83 0.0018 17.1 1.9 21 107-127 28-48 (82)
281 PF01475 FUR: Ferric uptake re 23.4 1.6E+02 0.0034 16.8 3.7 31 25-55 22-52 (120)
282 cd07357 HN_L-whirlin_R2_like S 23.4 83 0.0018 17.1 1.8 30 99-128 16-45 (81)
283 COG1460 Uncharacterized protei 23.3 1.7E+02 0.0036 17.1 3.2 7 46-52 83-89 (114)
284 PF13373 DUF2407_C: DUF2407 C- 23.3 1E+02 0.0022 18.7 2.4 20 2-21 9-28 (140)
285 TIGR00624 tag DNA-3-methyladen 23.2 74 0.0016 20.1 1.9 43 9-51 52-94 (179)
286 TIGR01529 argR_whole arginine 23.1 1.9E+02 0.004 17.6 4.1 34 23-56 13-46 (146)
287 KOG1264|consensus 23.0 4.3E+02 0.0093 21.7 6.5 56 20-75 190-250 (1267)
288 COG1859 KptA RNA:NAD 2'-phosph 22.6 2.3E+02 0.005 18.6 4.0 36 21-56 54-89 (211)
289 PRK08181 transposase; Validate 22.4 2.3E+02 0.0051 19.2 4.2 48 24-74 4-51 (269)
290 PF14069 SpoVIF: Stage VI spor 22.2 1.5E+02 0.0032 16.1 6.2 66 1-72 7-76 (79)
291 PF09107 SelB-wing_3: Elongati 22.2 1.1E+02 0.0025 14.7 2.3 29 24-57 8-36 (50)
292 PF00249 Myb_DNA-binding: Myb- 22.1 1E+02 0.0022 14.2 5.8 42 2-51 2-43 (48)
293 PF08355 EF_assoc_1: EF hand a 22.0 96 0.0021 16.6 1.9 19 56-74 12-30 (76)
294 PF03986 Autophagy_N: Autophag 21.9 45 0.00098 20.3 0.8 12 24-35 25-36 (145)
295 KOG0483|consensus 21.9 2.4E+02 0.0051 18.3 5.0 38 1-43 54-91 (198)
296 PRK10356 hypothetical protein; 21.9 2.8E+02 0.006 19.1 5.7 46 2-47 109-154 (274)
297 KOG1411|consensus 21.9 63 0.0014 23.0 1.5 30 2-32 378-407 (427)
298 cd08332 CARD_CASP2 Caspase act 21.5 1.6E+02 0.0034 16.2 4.0 46 24-74 32-77 (90)
299 KOG4403|consensus 21.5 1E+02 0.0022 22.6 2.4 30 9-38 67-96 (575)
300 PF00690 Cation_ATPase_N: Cati 21.4 1.3E+02 0.0028 15.2 3.4 27 15-41 9-35 (69)
301 PF12631 GTPase_Cys_C: Catalyt 21.4 1.4E+02 0.003 15.5 3.9 15 40-54 57-71 (73)
302 PF13099 DUF3944: Domain of un 21.4 1E+02 0.0022 13.8 2.4 20 99-118 13-32 (35)
303 PF07499 RuvA_C: RuvA, C-termi 21.3 1.1E+02 0.0024 14.3 4.3 38 30-71 4-41 (47)
304 PF00427 PBS_linker_poly: Phyc 21.2 83 0.0018 18.8 1.7 14 116-129 42-55 (131)
305 PF10891 DUF2719: Protein of u 21.1 79 0.0017 17.0 1.4 11 117-127 34-44 (81)
306 PF06627 DUF1153: Protein of u 21.1 1.4E+02 0.0031 16.5 2.5 18 2-19 59-76 (90)
307 smart00549 TAFH TAF homology. 21.1 1.4E+02 0.003 16.7 2.4 14 25-38 38-51 (92)
308 cd06404 PB1_aPKC PB1 domain is 21.0 43 0.00094 18.3 0.5 58 62-122 19-79 (83)
309 PF13543 KSR1-SAM: SAM like do 20.9 2E+02 0.0044 17.2 4.0 8 30-37 67-74 (129)
310 cd03521 Link_domain_KIAA0527_l 20.7 1.5E+02 0.0033 16.6 2.5 37 55-91 6-42 (95)
311 PF05952 ComX: Bacillus compet 20.5 1.4E+02 0.003 15.1 2.5 20 2-21 27-46 (57)
312 KOG2871|consensus 20.5 2.4E+02 0.0052 20.5 4.0 33 44-76 307-339 (449)
313 PF08839 CDT1: DNA replication 20.4 2.2E+02 0.0049 17.5 4.3 49 7-55 3-58 (163)
314 TIGR02613 mob_myst_B mobile my 20.2 2E+02 0.0044 18.1 3.4 19 22-40 127-145 (186)
315 PF07128 DUF1380: Protein of u 20.1 2.2E+02 0.0048 17.3 3.6 30 28-57 28-57 (139)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=144.49 Aligned_cols=128 Identities=45% Similarity=0.751 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCC
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDS 81 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (131)
.+|+++++++|+++|..+|++++|.|+..+|..+++.+|.+++...+..++..++. +.+.|+|.+|+.++.........
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 46899999999999999999999999999999999999999999999999999998 89999999999999999888889
Q ss_pred HHHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 82 TAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 82 ~~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
.+.++++|+.||.+ |..+++++++.++..+|.+++|.|+|++|.+.+..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999 88999999999999999999999999999998753
No 2
>KOG0027|consensus
Probab=99.93 E-value=2.9e-24 Score=129.94 Aligned_cols=127 Identities=54% Similarity=0.849 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCC---
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVD--- 80 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~--- 80 (131)
++..++.++..+|..+|.+++|+|+..+|..+++.+|..++..++..++..+|.+++|.|++.+|+.++........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999987754333
Q ss_pred -CHHHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 81 -STAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 81 -~~~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
..+.++.+|+.+|.+ |..++.++++.+++.+|.|+||.|+|.+|++++..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 345999999999999 77899999999999999999999999999999874
No 3
>PTZ00183 centrin; Provisional
Probab=99.91 E-value=2.5e-22 Score=122.23 Aligned_cols=129 Identities=40% Similarity=0.731 Sum_probs=116.8
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCC
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDS 81 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (131)
.++++.++.++..+|..+|++++|.|+..+|..++..++..++...+..++..+|.+++|.|+|.+|+.++.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 36889999999999999999999999999999999999888899999999999999999999999999987765444456
Q ss_pred HHHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 82 TAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 82 ~~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
...++.+|+.+|.+ |..++..++..++..+|.+++|.|++++|..++.+
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 67899999999988 55688999999999999999999999999998864
No 4
>KOG0028|consensus
Probab=99.90 E-value=2.1e-22 Score=118.52 Aligned_cols=129 Identities=40% Similarity=0.649 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCC
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDS 81 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (131)
-++++++-++++..|..+|++++|+|...||..+++.+|+.+..+++..++..+|.++.|.|+|++|...+........+
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999998887776679
Q ss_pred HHHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 82 TAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 82 ~~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
.+.+..+|+.+|-+ |..++.+++.+++..+|.++||.|+.++|+..|++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 99999999999988 88999999999999999999999999999999875
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.90 E-value=5.3e-22 Score=119.59 Aligned_cols=128 Identities=56% Similarity=0.937 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDST 82 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 82 (131)
.+++++++.+...|..+|.+++|.|+.++|..++..++..+..+.+..++..+|.+++|.|+|++|+.++..........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHH
Confidence 57899999999999999999999999999999999998888899999999999999999999999999988664444556
Q ss_pred HHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 83 AELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 83 ~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
..+..+|+.+|.+ |..++.+++..++..+|.+++|.|+|+||..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 7889999999988 44678888999999999999999999999998865
No 6
>KOG0031|consensus
Probab=99.87 E-value=1.5e-20 Score=110.05 Aligned_cols=122 Identities=32% Similarity=0.658 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
|+..||++++++|..+|.|++|.|..++|+.++.++|..++++++..++... .|.|+|.-|+..+...+....+.+
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHH
Confidence 6789999999999999999999999999999999999999999999999986 678999999999999998889999
Q ss_pred HHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 84 ELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 84 ~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
.+..+|+.+|.+ |..+++++++.+++.+..+..|.|+|..|+.++.
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999999998 7899999999999999999999999999999875
No 7
>KOG0044|consensus
Probab=99.79 E-value=4.3e-18 Score=105.26 Aligned_cols=125 Identities=20% Similarity=0.358 Sum_probs=105.6
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCC
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGR-NPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVD 80 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 80 (131)
.++++.++.+|++-|..-+ ++|.|+.++|+.++..+.+ .-+......+|..+|.+++|.|+|.||+..++..++. .
T Consensus 21 t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG-t 97 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG-T 97 (193)
T ss_pred cCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-c
Confidence 5789999999999998854 4599999999999999765 4556667889999999999999999999999987655 6
Q ss_pred CHHHHHHHHHhhCcC---------------------CC-------CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 81 STAELLEAFQVFDKD---------------------GE-------KLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 81 ~~~~~~~~f~~~d~~---------------------~~-------~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
..+.++++|+.||.+ |. ...++.++.+|+++|.|+||.||++||+....
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 668899999999999 21 12345688899999999999999999998765
No 8
>KOG0030|consensus
Probab=99.79 E-value=6.2e-18 Score=97.60 Aligned_cols=128 Identities=38% Similarity=0.701 Sum_probs=115.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CCCcccHHHHHHHHhccC--C
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPD--DVGSVDFESFLKLMANHI--P 77 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~--~ 77 (131)
..+++++..+++++|..||..++|.|+..+.-.+|+.+|.+|++.++.+.+....++ +-.+++|++|+.+++.+. +
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 567889999999999999999999999999999999999999999999999998776 447899999999998776 3
Q ss_pred CCCCHHHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 78 NVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 78 ~~~~~~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
.....+.....++.+|++ |..+++++++.++.-.. |.+|-|+|+.|++.+.+
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 446677888899999998 88999999999999888 89999999999998764
No 9
>KOG0034|consensus
Probab=99.78 E-value=1.9e-17 Score=102.28 Aligned_cols=123 Identities=29% Similarity=0.522 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHhhhhcCC-CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCCCCCC
Q psy6108 4 LDEEQITEWKEAFALFDKN-GSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS-VDFESFLKLMANHIPNVDS 81 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~ 81 (131)
++..++..+..+|.+++.+ +.|+++.+||..+... . ......+++..++.+++|. |+|++|+..+....+....
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~-~---~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPEL-A---LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHH-h---cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 7889999999999999999 9999999999998733 2 2233457778887777777 9999999999999877677
Q ss_pred HHHHHHHHHhhCcC------------------CCCCC--HHH----HHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 82 TAELLEAFQVFDKD------------------GEKLS--DQE----VDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 82 ~~~~~~~f~~~d~~------------------~~~ls--~~~----~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
.++++-+|+.||.+ |...+ ++. ++.+|.++|.++||+|+++||.+++.+
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 77999999999999 33333 333 566788899999999999999999865
No 10
>KOG0037|consensus
Probab=99.69 E-value=2e-15 Score=93.54 Aligned_cols=114 Identities=20% Similarity=0.341 Sum_probs=104.2
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHH
Q psy6108 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLE 87 (131)
Q Consensus 9 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (131)
..++...|...|.+++|.|+.+|++.+|... .-+...+.++.++..+|.+.+|+|++.||..++..+ ..++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 4467788999999999999999999999865 456788999999999999999999999999999887 89999
Q ss_pred HHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 88 AFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 88 ~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
+|+.+|+| |..|+++-.+.+++++|...+|.|.+++|++++.
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 99999999 8899999999999999977799999999999875
No 11
>KOG0036|consensus
Probab=99.69 E-value=2e-15 Score=101.23 Aligned_cols=120 Identities=22% Similarity=0.383 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRN-PTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDST 82 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 82 (131)
..++...++..+|..+|.+++|.++..++.+.+..+..+ ++......++..+|.+.+|+|+|.+|..++.. .+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~E 81 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------KE 81 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------hH
Confidence 467788899999999999999999999999999998766 77888889999999999999999999999984 34
Q ss_pred HHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 83 AELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 83 ~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
..+..+|+.+|.+ |..++.++++.+++.+|+++++.|+++||..++.
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 6788888888887 8899999999999999999999999999998875
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.62 E-value=1.3e-14 Score=103.82 Aligned_cols=104 Identities=29% Similarity=0.479 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-CCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHhccCCC
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIG-RNPTEQE---LEDLLKEVDPDDVGSVDFESFLKLMANHIPN 78 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 78 (131)
.++..+++++.++|..+|++++|.+ +..++..+| ..++..+ +..++..+|.+++|.|++.||+.++...
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l--- 208 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF--- 208 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh---
Confidence 5788999999999999999999997 888889998 5788776 7999999999999999999999999864
Q ss_pred CCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 79 VDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 79 ~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
+...+++++..+|+.+|.|++|.|+++||.+++..
T Consensus 209 -----------------g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 209 -----------------GNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred -----------------ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 33456667777777777777777777777777653
No 13
>KOG0037|consensus
Probab=99.60 E-value=1.9e-14 Score=89.25 Aligned_cols=96 Identities=25% Similarity=0.479 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHH
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLE 87 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (131)
-+..|+.+|..+|.|++|.|+..||+.+|..+|+.++++.+..+++++|..++|.|.|.+|+.+|..+ ..+..
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~ 194 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTE 194 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHH
Confidence 47889999999999999999999999999999999999999999999998779999999999999876 55555
Q ss_pred HHHhhCcCCCCCCHHHHHHHHHhhCCCCCC--ceeHHHHHHHHh
Q psy6108 88 AFQVFDKDGEKLSDQEVDELIGLADENNTG--HVRYEEFAKVMT 129 (131)
Q Consensus 88 ~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg--~i~~~eF~~~~~ 129 (131)
+|+..| .+..| .|+|++|+.+..
T Consensus 195 ~Fr~~D-------------------~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 195 AFRRRD-------------------TAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHhc-------------------cccceeEEEeHHHHHHHhh
Confidence 555554 45555 467777777654
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.56 E-value=3.5e-14 Score=74.32 Aligned_cols=62 Identities=32% Similarity=0.695 Sum_probs=54.3
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHH----HHHHHHHhcCCCCCCcccHHHHHHHH
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQ----ELEDLLKEVDPDDVGSVDFESFLKLM 72 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (131)
++..+|..+|.+++|+|+.+||+.++..++...+.. .+..++..+|.+++|.|+|.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999998766554 44556999999999999999999875
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=4.9e-14 Score=77.52 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhhcC-CCCCceeHHHHHHHHHH-cCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 6 EEQITEWKEAFALFDK-NGSGKIVSKYVGTVMRA-IGRNPTE-QELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+..+..+..+|+.+|. +++|+|+..||+.++.. ++..++. .++..+++.+|.+++|.|+|.||+.++..+
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4567889999999999 99999999999999998 8766777 899999999999999999999999998765
No 16
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.50 E-value=3.8e-13 Score=74.03 Aligned_cols=70 Identities=16% Similarity=0.406 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 6 EEQITEWKEAFALFD-KNGSG-KIVSKYVGTVMRA-----IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+.-+..+.++|..+| .+++| +|+..+|+.+|+. ++..+++.++..+++.+|.+++|.|+|.+|+.++...
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456788999999998 79999 6999999999998 7888999999999999999999999999999988654
No 17
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.49 E-value=4.7e-13 Score=75.09 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.++++++..+..+|..+|.+++|.|+..+++.+++..+ ++.+++..++..+|.+++|.|+|++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999865 688899999999999999999999999988765
No 18
>KOG0040|consensus
Probab=99.49 E-value=1.1e-12 Score=99.32 Aligned_cols=128 Identities=23% Similarity=0.455 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC-------CHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP-------TEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
.++|++++.+|..+|.+||.+.+|.++..+|+.+|+++|+.+ +.+.++.++..+|++.+|.|+..+|++++..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 578999999999999999999999999999999999998776 3568999999999999999999999999987
Q ss_pred cC-CCCCCHHHHHHHHHhhCcCC---------CCCCHHHHHHHHHhhCCC--------CCCceeHHHHHHHHh
Q psy6108 75 HI-PNVDSTAELLEAFQVFDKDG---------EKLSDQEVDELIGLADEN--------NTGHVRYEEFAKVMT 129 (131)
Q Consensus 75 ~~-~~~~~~~~~~~~f~~~d~~~---------~~ls~~~~~~~~~~~d~~--------~dg~i~~~eF~~~~~ 129 (131)
.. .+....+.+..+|+.+|... -.+|+++++.++..+-+- .-+.+.|.+|.+.+.
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a~~~yvtke~~~~~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDAGKPYVTKEELYQNLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred cccccccchHHHHHHHHHhhcCCccccHHHHHhcCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 75 45566779999999999842 267888888888876432 234599999998764
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=78.75 Aligned_cols=66 Identities=39% Similarity=0.662 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 9 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
-+++..+|+.+|.|++|+|+..+++.++..+|-..+.+++..++..++.+++|.|+|++|+..+..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 456677777778888888888888888887777788888888888887778888888888776653
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.42 E-value=2.4e-12 Score=70.85 Aligned_cols=71 Identities=15% Similarity=0.379 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHhhhhcC-CC-CCceeHHHHHHHHHH---cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 5 DEEQITEWKEAFALFDK-NG-SGKIVSKYVGTVMRA---IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 5 ~~~~~~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
-++.+..+..+|.+++. ++ +|+|+..||+.++.. +|..++.+++..+++.+|.+++|+|+|.+|+.++..+
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 36778889999999998 66 899999999999963 6888999999999999999999999999999988754
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.39 E-value=3.5e-12 Score=70.43 Aligned_cols=70 Identities=19% Similarity=0.402 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhcC--CCCCceeHHHHHHHHHH-cCCC----CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 6 EEQITEWKEAFALFDK--NGSGKIVSKYVGTVMRA-IGRN----PTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+++++.+..+|..+|. +++|.|+..+|..++.. ++.. .+...+..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 6788999999999999 89999999999999976 4433 458999999999999999999999999998754
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.39 E-value=5.6e-12 Score=70.15 Aligned_cols=69 Identities=20% Similarity=0.419 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhhc-CCCCCc-eeHHHHHHHHHH-cC----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 7 EQITEWKEAFALFD-KNGSGK-IVSKYVGTVMRA-IG----RNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 7 ~~~~~~~~~F~~~D-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.-+..+.++|..+| .+++|+ |+..|++.+|.. ++ ..++.+.+..++..+|.+++|.|+|.+|+.++..+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 44678899999997 999994 999999999975 43 35688999999999999999999999999988764
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.39 E-value=5.8e-12 Score=70.15 Aligned_cols=70 Identities=17% Similarity=0.370 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-c----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 6 EEQITEWKEAFALFD-KNGSG-KIVSKYVGTVMRA-I----GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+.-+..+.++|..+| .|++| +|+..||+.++.. + ....+...+..++..+|.+++|.|+|.||+.++..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 566788899999999 78998 5999999999976 2 334577899999999999999999999999998765
No 24
>KOG0027|consensus
Probab=99.38 E-value=3.6e-12 Score=77.16 Aligned_cols=67 Identities=39% Similarity=0.699 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
..+.+.++|+.+|++++|+||..||+.+|..+|...+..++..++..+|.+++|.|+|.+|+..+..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 3568999999999999999999999999999999999999999999999999999999999998864
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.38 E-value=5.9e-12 Score=70.34 Aligned_cols=69 Identities=19% Similarity=0.411 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhhcC-CC-CCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 7 EQITEWKEAFALFDK-NG-SGKIVSKYVGTVMRA-----IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 7 ~~~~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.....+..+|..+|. ++ +|+|+..|++.++.. ++..++.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456778999999997 87 699999999999986 4667899999999999999999999999999888754
No 26
>KOG0038|consensus
Probab=99.35 E-value=1.6e-11 Score=71.92 Aligned_cols=123 Identities=23% Similarity=0.411 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHhhhhcCCC-----CC------ceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy6108 4 LDEEQITEWKEAFALFDKNG-----SG------KIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLM 72 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~-----~g------~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (131)
+|.+++.++...|+.+.++. .| +++.+.+ .-+..+.-++-. +++...+..+|.|.++|++|+..+
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i-~kMPELkenpfk---~ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELI-EKMPELKENPFK---RRICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHH-hhChhhhcChHH---HHHHHHhccCCCCcccHHHHHHHH
Confidence 57788888888888776532 11 2344333 324444333333 567788888999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHhhCcC------------------CCCCCHHHH----HHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 73 ANHIPNVDSTAELLEAFQVFDKD------------------GEKLSDQEV----DELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 73 ~~~~~~~~~~~~~~~~f~~~d~~------------------~~~ls~~~~----~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
+..+......-.+..+|+.||-+ ...+|++++ +.+++.+|.++||++++.||..++.+
T Consensus 98 SV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 98 SVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 98876655556788899999988 346777775 55777899999999999999998765
No 27
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.32 E-value=1.2e-11 Score=64.70 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=55.4
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 13 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+++|..+|++++|.|+.+|++.++..++. +.+.+..++..++.+++|.|+|.+|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999998764 88889999999999999999999999988653
No 28
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.31 E-value=1.9e-11 Score=63.83 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy6108 48 LEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKV 127 (131)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~ 127 (131)
++.+|..+|.+++|.|+.+|+..++....... ... ...+.++.+|..+|.|+||.|+++||..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDM-SDE---------------ESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS-THH---------------HHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccc-cHH---------------HHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 67899999999999999999999999773221 111 12334777899999999999999999987
Q ss_pred H
Q psy6108 128 M 128 (131)
Q Consensus 128 ~ 128 (131)
+
T Consensus 66 ~ 66 (66)
T PF13499_consen 66 M 66 (66)
T ss_dssp H
T ss_pred C
Confidence 5
No 29
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.31 E-value=1.5e-11 Score=61.78 Aligned_cols=52 Identities=27% Similarity=0.560 Sum_probs=48.7
Q ss_pred CCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 23 GSGKIVSKYVGTVMRAIGRN-PTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
++|.|+.++|+.++..+|.. ++.+++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 46999999999999888999 99999999999999999999999999999864
No 30
>KOG4223|consensus
Probab=99.29 E-value=4.2e-11 Score=78.52 Aligned_cols=120 Identities=21% Similarity=0.342 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCH---
Q psy6108 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDST--- 82 (131)
Q Consensus 7 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--- 82 (131)
..+.+..+.|+..|.|++|.++.+||-.+|..- ...+..-.++.-+...|.|++|.|+++||+.=+-...+.....
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 445667889999999999999999999998654 3445666777888999999999999999999887665322111
Q ss_pred -HHHHHHHHhhCcC-----------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy6108 83 -AELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAK 126 (131)
Q Consensus 83 -~~~~~~f~~~d~~-----------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~ 126 (131)
..-...+..+|+| +......++..++..+|.|+||++|++|.+.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 1233566777777 2344456778899999999999999999875
No 31
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.28 E-value=6.1e-11 Score=65.37 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhh-hcCCCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 6 EEQITEWKEAFAL-FDKNGSG-KIVSKYVGTVMRAI-----GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 6 ~~~~~~~~~~F~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+..+..+..+|.. +|.+++| +|+..||+.++... +....+..+..++..+|.+++|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5678899999999 7788875 99999999999874 234567899999999999999999999999988754
No 32
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.28 E-value=3e-11 Score=61.79 Aligned_cols=61 Identities=41% Similarity=0.835 Sum_probs=57.3
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy6108 12 WKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLM 72 (131)
Q Consensus 12 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (131)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=2.6e-11 Score=66.74 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=56.6
Q ss_pred HHHHHHHhcCC-CCCCcccHHHHHHHHhc-cCCCCCCHHHHHHHHHhhCcCCCCCCH-HHHHHHHHhhCCCCCCceeHHH
Q psy6108 47 ELEDLLKEVDP-DDVGSVDFESFLKLMAN-HIPNVDSTAELLEAFQVFDKDGEKLSD-QEVDELIGLADENNTGHVRYEE 123 (131)
Q Consensus 47 ~~~~~~~~~d~-~~~g~i~~~ef~~~~~~-~~~~~~~~~~~~~~f~~~d~~~~~ls~-~~~~~~~~~~d~~~dg~i~~~e 123 (131)
.+...|+.+|. +++|.|+..|+..++.. + |..++. ++++.+++.+|.|+||.|+|+|
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el--------------------g~~ls~~~~v~~mi~~~D~d~DG~I~F~E 68 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQL--------------------PHLLKDVEGLEEKMKNLDVNQDSKLSFEE 68 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHh--------------------hhhccCHHHHHHHHHHhCCCCCCCCcHHH
Confidence 46788999999 99999999999999987 4 445676 8899999999999999999999
Q ss_pred HHHHHhc
Q psy6108 124 FAKVMTL 130 (131)
Q Consensus 124 F~~~~~~ 130 (131)
|..++.+
T Consensus 69 F~~l~~~ 75 (89)
T cd05022 69 FWELIGE 75 (89)
T ss_pred HHHHHHH
Confidence 9998864
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.25 E-value=5.7e-11 Score=68.42 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy6108 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMA 73 (131)
Q Consensus 5 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (131)
.+.....+.-.|..+|.|++|+|+..|+..+. .......+..++..+|.+++|.||+.||+.++.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 46778889999999999999999999999876 346678889999999999999999999999994
No 35
>KOG0377|consensus
Probab=99.19 E-value=7.1e-10 Score=75.81 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=91.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHH-cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCC----------
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRA-IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPN---------- 78 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~---------- 78 (131)
..+...|+.+|+.++|+|+...+..++.. +++++++..+..-+.. .+.+|.|.|...+..+..-...
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~--~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLAN--GSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccC--CCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 45678899999999999999999999877 5888888766544433 3557789888877766533100
Q ss_pred -CCCHHHHHHHHHhhCcC---------------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 79 -VDSTAELLEAFQVFDKD---------------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 79 -~~~~~~~~~~f~~~d~~---------------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
...+..+..+|+.+|.| ...++.+++.++.+.+|.|+||+|++.||+++++
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 01123467789999988 4578899999999999999999999999999886
No 36
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.7e-10 Score=57.88 Aligned_cols=52 Identities=31% Similarity=0.524 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 59 DVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK-LSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 59 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~-ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
++|.|+.++|..++... |.. ++++++..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~--------------------g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL--------------------GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT--------------------TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh--------------------CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36889999999998654 777 99999999999999999999999999999864
No 37
>KOG4223|consensus
Probab=99.16 E-value=4e-10 Score=74.01 Aligned_cols=124 Identities=20% Similarity=0.276 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC-------C--
Q psy6108 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI-------P-- 77 (131)
Q Consensus 7 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-------~-- 77 (131)
+...++..++.++|.+++|.|+..|++..+...--.....+..+-+..+|.+.+|.|+|++++....... .
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 3556788899999999999999999999987754444556667888999999999999999999987532 0
Q ss_pred -CCCCH---HHHHHHHHhhCcCCC-CCCHHH-----------------HHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 78 -NVDST---AELLEAFQVFDKDGE-KLSDQE-----------------VDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 78 -~~~~~---~~~~~~f~~~d~~~~-~ls~~~-----------------~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
..... ..-+.-|+..|.||. .+|.++ +...+..+|+|+||+|+++||+.=|.+
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 00000 123456888898844 355444 556677899999999999999976643
No 38
>PF14658 EF-hand_9: EF-hand domain
Probab=99.16 E-value=2.8e-10 Score=58.36 Aligned_cols=61 Identities=39% Similarity=0.734 Sum_probs=57.1
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHhc
Q psy6108 14 EAFALFDKNGSGKIVSKYVGTVMRAIGR-NPTEQELEDLLKEVDPDDV-GSVDFESFLKLMAN 74 (131)
Q Consensus 14 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 74 (131)
.+|..+|++++|.|...++..+|+..+. .+.+.+++.+...+|+++. |.|+++.|+.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999977 8999999999999999988 99999999999975
No 39
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.16 E-value=3.9e-10 Score=62.09 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=56.8
Q ss_pred HHHHHHHhcC-CCCCC-cccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHH
Q psy6108 47 ELEDLLKEVD-PDDVG-SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEF 124 (131)
Q Consensus 47 ~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF 124 (131)
.+..+|+.+| .+++| .|+..++..+++... ... -|...++++++.+++.+|.|++|.|+|++|
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~---------~~~------lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF 73 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNEL---------SHF------LEEIKEQEVVDKVMETLDSDGDGECDFQEF 73 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHh---------HHH------hcCCCCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 4678899998 78999 699999999998621 110 166789999999999999999999999999
Q ss_pred HHHHh
Q psy6108 125 AKVMT 129 (131)
Q Consensus 125 ~~~~~ 129 (131)
+.++.
T Consensus 74 ~~li~ 78 (88)
T cd05027 74 MAFVA 78 (88)
T ss_pred HHHHH
Confidence 99875
No 40
>PTZ00183 centrin; Provisional
Probab=99.16 E-value=3.1e-09 Score=64.48 Aligned_cols=99 Identities=23% Similarity=0.363 Sum_probs=82.9
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHH
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAF 89 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f 89 (131)
.+..+|..+|.+++|.|+..+|..++... ........+..+|..+|.+++|.|+..+|..++... +.......+..+|
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~~ 132 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQEMI 132 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHH
Confidence 46677888999999999999999987653 344667888999999999999999999999999854 4456778899999
Q ss_pred HhhCcCCC-CCCHHHHHHHHHh
Q psy6108 90 QVFDKDGE-KLSDQEVDELIGL 110 (131)
Q Consensus 90 ~~~d~~~~-~ls~~~~~~~~~~ 110 (131)
..+|.++. .++.+++..++..
T Consensus 133 ~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 133 DEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHhc
Confidence 99998755 5999998888765
No 41
>KOG0041|consensus
Probab=99.14 E-value=2.7e-10 Score=70.19 Aligned_cols=73 Identities=26% Similarity=0.432 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
++..+|+.+..+|..+|.+.+|+|+..||+.++.++|-+-+.--++.++..+|.+.+|+|+|.+|+-+++.-.
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999888888889999999999999999999999887654
No 42
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.13 E-value=4.3e-10 Score=61.98 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhhcCC--CCCceeHHHHHHHHH-HcCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 6 EEQITEWKEAFALFDKN--GSGKIVSKYVGTVMR-AIGRNPT----EQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+.-+..+...|..++.. .+|.|+.+||+.++. .++..++ ..++..++..+|.+++|.|+|++|+.++...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677888999999865 479999999999997 4555555 8999999999999999999999999988754
No 43
>PTZ00184 calmodulin; Provisional
Probab=99.13 E-value=6e-10 Score=66.89 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=79.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHH
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEA 88 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (131)
..+..+|..+|.+++|.|+.++|..++... ........+..+|..+|.+++|.|+..+|..++... +.......+..+
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 125 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEM 125 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHH
Confidence 456778999999999999999999988764 334566778899999999999999999999998765 444677889999
Q ss_pred HHhhCcCCC-CCCHHHHHHHH
Q psy6108 89 FQVFDKDGE-KLSDQEVDELI 108 (131)
Q Consensus 89 f~~~d~~~~-~ls~~~~~~~~ 108 (131)
|+.+|.++. .++.+++..++
T Consensus 126 ~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 126 IREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHhcCCCCCCcCcHHHHHHHH
Confidence 999998744 58877776654
No 44
>KOG0044|consensus
Probab=99.12 E-value=7.5e-10 Score=68.91 Aligned_cols=97 Identities=24% Similarity=0.218 Sum_probs=81.2
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCC----------CCC
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIP----------NVD 80 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----------~~~ 80 (131)
....+|+.+|.+++|.|+..||..++..+......+.+...|+.||.+++|.|++.|++.++..... ...
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~ 144 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEET 144 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccccc
Confidence 4466789999999999999999999998888888888999999999999999999999999887651 223
Q ss_pred CHHHHHHHHHhhCcCC-CCCCHHHHHHH
Q psy6108 81 STAELLEAFQVFDKDG-EKLSDQEVDEL 107 (131)
Q Consensus 81 ~~~~~~~~f~~~d~~~-~~ls~~~~~~~ 107 (131)
....+..+|+.+|.|+ -.+|-+++...
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 5567889999999996 46777776543
No 45
>KOG2643|consensus
Probab=99.09 E-value=5e-10 Score=76.22 Aligned_cols=119 Identities=26% Similarity=0.369 Sum_probs=84.0
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCH--HHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHH
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTE--QELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELL 86 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~--~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 86 (131)
+-+...|..+|+..+|.|+..+|..++-.+ +.+... ..++++-+.++..+.| |++.||.+++.-.. +......+.
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~g-ISl~Ef~~Ff~Fl~-~l~dfd~Al 395 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKG-ISLQEFKAFFRFLN-NLNDFDIAL 395 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCC-cCHHHHHHHHHHHh-hhhHHHHHH
Confidence 344556899999999999999998887664 333322 3456677777665444 99999998887552 222223333
Q ss_pred HHHHhhCcC--------------CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 87 EAFQVFDKD--------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 87 ~~f~~~d~~--------------~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
..|...... |..||...++-+|.-+|.|+||.|+++||+.+|++
T Consensus 396 ~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 396 RFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 333332222 77888888888999999999999999999999874
No 46
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.09 E-value=9.9e-10 Score=60.46 Aligned_cols=66 Identities=18% Similarity=0.371 Sum_probs=55.3
Q ss_pred HHHHHHhcCC-CC-CCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHH
Q psy6108 48 LEDLLKEVDP-DD-VGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFA 125 (131)
Q Consensus 48 ~~~~~~~~d~-~~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~ 125 (131)
+-.+|..|+. ++ +|.|+..|+..++..... -|..+++++++.+++.+|.|++|+|+|+||+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~-----------------lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv 74 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELT-----------------IGSKLQDAEIAKLMEDLDRNKDQEVNFQEYV 74 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHh-----------------cCCCCCHHHHHHHHHHhcCCCCCCCcHHHHH
Confidence 4567888987 56 889999999999963210 1778999999999999999999999999999
Q ss_pred HHHhc
Q psy6108 126 KVMTL 130 (131)
Q Consensus 126 ~~~~~ 130 (131)
.++..
T Consensus 75 ~lm~~ 79 (88)
T cd05029 75 TFLGA 79 (88)
T ss_pred HHHHH
Confidence 98764
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.04 E-value=1.5e-09 Score=60.55 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCC-CC-CCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHH
Q psy6108 46 QELEDLLKEVDP-DD-VGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEE 123 (131)
Q Consensus 46 ~~~~~~~~~~d~-~~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~e 123 (131)
..+...|..+|. ++ +|.|+..|+..++....+. .-|..++.++++.++..+|.+++|.|+|++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~---------------~lg~~~s~~ei~~~~~~~D~~~dg~I~f~e 72 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE---------------FLKNQKDPMAVDKIMKDLDQNRDGKVNFEE 72 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH---------------HhhccccHHHHHHHHHHhCCCCCCcCcHHH
Confidence 456788999987 87 6999999999998742100 004567889999999999999999999999
Q ss_pred HHHHHhc
Q psy6108 124 FAKVMTL 130 (131)
Q Consensus 124 F~~~~~~ 130 (131)
|+.++..
T Consensus 73 F~~l~~~ 79 (94)
T cd05031 73 FVSLVAG 79 (94)
T ss_pred HHHHHHH
Confidence 9988753
No 48
>KOG0028|consensus
Probab=99.02 E-value=2.7e-09 Score=63.64 Aligned_cols=100 Identities=24% Similarity=0.389 Sum_probs=80.0
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHH-cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHH
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRA-IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEA 88 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (131)
.++.++..-.|++++|.|+.++|+..+.. ++..-+.+++...|+.+|.+++|.|++.+|+.+...+ +.....+.+...
T Consensus 69 ~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~El~eM 147 (172)
T KOG0028|consen 69 EEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDEELMEM 147 (172)
T ss_pred HHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHHHHHHH
Confidence 34555667778888999999999888654 5656688999999999999999999999999988876 555777888888
Q ss_pred HHhhCcCCC-CCCHHHHHHHHHh
Q psy6108 89 FQVFDKDGE-KLSDQEVDELIGL 110 (131)
Q Consensus 89 f~~~d~~~~-~ls~~~~~~~~~~ 110 (131)
..-+|.++. .++++++-.+++.
T Consensus 148 IeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 148 IEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHhcccccccccHHHHHHHHhc
Confidence 888888865 5888888777654
No 49
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.01 E-value=2.4e-09 Score=60.51 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.+++++...+..+|...++ .+|.|+..+.+.++...+ ++.+.+..||...|.+++|.+++.||+.++...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4688999999999999986 579999999999998876 888999999999999999999999999887643
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.00 E-value=3.6e-09 Score=58.91 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=54.4
Q ss_pred HHHHHHHhcC-CCCCC-cccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHH
Q psy6108 47 ELEDLLKEVD-PDDVG-SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEF 124 (131)
Q Consensus 47 ~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF 124 (131)
.+..+|+.+| .+++| +|+..|+..++....+. .+ +...++.+++.++..+|.|+||.|+|+||
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~------------~~---~~~~~~~~v~~i~~elD~n~dG~Idf~EF 75 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTD------------FL---SSQKDPMLVDKIMNDLDSNKDNEVDFNEF 75 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHH------------hc---ccccCHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 3567799998 67888 59999999999753110 00 23347889999999999999999999999
Q ss_pred HHHHhc
Q psy6108 125 AKVMTL 130 (131)
Q Consensus 125 ~~~~~~ 130 (131)
+.++.+
T Consensus 76 ~~l~~~ 81 (93)
T cd05026 76 VVLVAA 81 (93)
T ss_pred HHHHHH
Confidence 998864
No 51
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.97 E-value=6.5e-09 Score=58.24 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHH
Q psy6108 46 QELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFA 125 (131)
Q Consensus 46 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~ 125 (131)
..+..+|..+|.+++|.|+..++..++... | ++.+++..++..+|.+.+|.|++++|+
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--------------------~--~~~~ev~~i~~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS--------------------G--LPQTLLAKIWNLADIDNDGELDKDEFA 67 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--------------------C--CCHHHHHHHHHHhcCCCCCCcCHHHHH
Confidence 456778999999999999999999998742 2 677889999999999999999999999
Q ss_pred HHHhc
Q psy6108 126 KVMTL 130 (131)
Q Consensus 126 ~~~~~ 130 (131)
.++..
T Consensus 68 ~~~~~ 72 (96)
T smart00027 68 LAMHL 72 (96)
T ss_pred HHHHH
Confidence 98753
No 52
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.97 E-value=4.4e-09 Score=54.83 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=51.5
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy6108 49 EDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 49 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 128 (131)
+.+|..+|.+++|.|+..++..++... | ++.+++..++..+|.+++|.|++.+|+.++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--------------------g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--------------------G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--------------------C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 467889999999999999999998743 3 377889999999999999999999999887
Q ss_pred h
Q psy6108 129 T 129 (131)
Q Consensus 129 ~ 129 (131)
.
T Consensus 60 ~ 60 (67)
T cd00052 60 H 60 (67)
T ss_pred H
Confidence 5
No 53
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.97 E-value=5.9e-09 Score=57.97 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=56.7
Q ss_pred HHHHHHHHhcC-CCCCC-cccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHH
Q psy6108 46 QELEDLLKEVD-PDDVG-SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEE 123 (131)
Q Consensus 46 ~~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~e 123 (131)
+.+...|..+| .+++| .|+..++..++....+. . -+..+++++++.++..+|.+++|.|+|.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~------------~---~~~~~s~~~v~~i~~~~D~d~~G~I~f~e 73 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSD------------F---LDAQKDADAVDKIMKELDENGDGEVDFQE 73 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHH------------H---ccCCCCHHHHHHHHHHHCCCCCCcCcHHH
Confidence 45788999997 99999 59999999999742110 0 03357889999999999999999999999
Q ss_pred HHHHHhc
Q psy6108 124 FAKVMTL 130 (131)
Q Consensus 124 F~~~~~~ 130 (131)
|+.++..
T Consensus 74 F~~l~~~ 80 (92)
T cd05025 74 FVVLVAA 80 (92)
T ss_pred HHHHHHH
Confidence 9998764
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.97 E-value=8.3e-09 Score=52.51 Aligned_cols=61 Identities=30% Similarity=0.589 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy6108 48 LEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKV 127 (131)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~ 127 (131)
+..+|..+|.+++|.|++.+|..++... +...+.+.+..++..++.+++|.|++++|..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL--------------------GEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh--------------------CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 4678899999999999999999998765 56678888899999999999999999999987
Q ss_pred H
Q psy6108 128 M 128 (131)
Q Consensus 128 ~ 128 (131)
+
T Consensus 62 ~ 62 (63)
T cd00051 62 M 62 (63)
T ss_pred h
Confidence 6
No 55
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.94 E-value=6.2e-09 Score=57.39 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCC--CCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHH
Q psy6108 46 QELEDLLKEVDP--DDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEE 123 (131)
Q Consensus 46 ~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~e 123 (131)
..+...|..+|. +++|.|+..++..++....+. ..+...+.++++.++..+|.+++|.|+|++
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~---------------~~~~~~~~~ei~~i~~~~d~~~~g~I~f~e 72 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN---------------FLKNQKDPEAVDKIMKDLDVNKDGKVDFQE 72 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh---------------hccCCCCHHHHHHHHHHhccCCCCcCcHHH
Confidence 456778999999 899999999999998742110 002335788999999999999999999999
Q ss_pred HHHHHhc
Q psy6108 124 FAKVMTL 130 (131)
Q Consensus 124 F~~~~~~ 130 (131)
|+.++..
T Consensus 73 F~~~~~~ 79 (88)
T cd00213 73 FLVLIGK 79 (88)
T ss_pred HHHHHHH
Confidence 9998764
No 56
>KOG0034|consensus
Probab=98.92 E-value=8.9e-09 Score=64.03 Aligned_cols=66 Identities=26% Similarity=0.546 Sum_probs=54.7
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCC--H----HHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPT--E----QELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.++.-+|+.+|.+++|.|+.+|+.+++..+ +.... . ..+..++..+|.+++|+|+|+||+.++...
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 577788999999999999999999999886 43344 3 344567888999999999999999998764
No 57
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.89 E-value=3.5e-08 Score=54.12 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH-c----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRA-I----GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+..+..+..+|..+. ...+.++..||+.++.. + ....++..+..+++..|.+++|.|+|.||+.++..+
T Consensus 4 E~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 4 EHSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456777889999997 44579999999999865 2 344568889999999999999999999999998765
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.85 E-value=5.5e-09 Score=45.35 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=25.9
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 103 EVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 103 ~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
+++.+|+.+|.|+||+|+++||..++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999875
No 59
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.84 E-value=2.5e-08 Score=55.01 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=53.2
Q ss_pred HHHHHHh-cCCCCCC-cccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHH
Q psy6108 48 LEDLLKE-VDPDDVG-SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFA 125 (131)
Q Consensus 48 ~~~~~~~-~d~~~~g-~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~ 125 (131)
+..+|+. .+.+++| .|+..||..++....+. + .+...++.+++.+++.+|.|+||.|+|+||+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~-------------~--~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELAS-------------F--TKNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhH-------------h--hcCCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 4567778 5566765 99999999999864211 0 0345678899999999999999999999999
Q ss_pred HHHhc
Q psy6108 126 KVMTL 130 (131)
Q Consensus 126 ~~~~~ 130 (131)
.++..
T Consensus 76 ~l~~~ 80 (89)
T cd05023 76 NLIGG 80 (89)
T ss_pred HHHHH
Confidence 98764
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.80 E-value=1.3e-08 Score=44.14 Aligned_cols=28 Identities=46% Similarity=0.639 Sum_probs=21.6
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHH
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 38 (131)
++..+|+.+|+|++|+|+.+||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3567788888888888888888887765
No 61
>PLN02964 phosphatidylserine decarboxylase
Probab=98.79 E-value=6.2e-08 Score=70.24 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.++++...+..+|..+|.+++|.|+..||..++..++...+.+++..+|..+|.+++|.|+++|+..++...
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 455666668999999999999999999999999988877889999999999999999999999999998873
No 62
>KOG0031|consensus
Probab=98.76 E-value=8.5e-08 Score=56.98 Aligned_cols=65 Identities=28% Similarity=0.578 Sum_probs=60.9
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
..+..+|..+|++++|.|....++.+|...|-+.+++++..++..+..+..|.++|..|+..+..
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 45678899999999999999999999999999999999999999999999999999999999873
No 63
>KOG0030|consensus
Probab=98.75 E-value=6.2e-08 Score=56.61 Aligned_cols=65 Identities=31% Similarity=0.618 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMA 73 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (131)
..+.+.+-++.+|++++|.|...||+.+|..+|-.++.+++..++... .+++|.|+|+.|+..+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 356677888999999999999999999999999999999999998887 56789999999998764
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.69 E-value=1e-07 Score=52.54 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=51.2
Q ss_pred HHHHHHhcCCC--CCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCC----CCHHHHHHHHHhhCCCCCCceeH
Q psy6108 48 LEDLLKEVDPD--DVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK----LSDQEVDELIGLADENNTGHVRY 121 (131)
Q Consensus 48 ~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~----ls~~~~~~~~~~~d~~~dg~i~~ 121 (131)
+-.+|..|+.. .+|.|+..|+..++.... |.. .++++++.+|..+|.+++|.|+|
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~-------------------g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f 70 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKEL-------------------PNFLKKEKNQKAIDKIFEDLDTNQDGQLSF 70 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHh-------------------hHhhccCCCHHHHHHHHHHcCCCCCCcCcH
Confidence 45677888754 478999999999997421 222 44899999999999999999999
Q ss_pred HHHHHHHhc
Q psy6108 122 EEFAKVMTL 130 (131)
Q Consensus 122 ~eF~~~~~~ 130 (131)
++|+.++..
T Consensus 71 ~eF~~~~~~ 79 (88)
T cd05030 71 EEFLVLVIK 79 (88)
T ss_pred HHHHHHHHH
Confidence 999998763
No 65
>KOG0036|consensus
Probab=98.68 E-value=2.5e-07 Score=63.06 Aligned_cols=80 Identities=15% Similarity=0.309 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHH
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLE 87 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (131)
...++..+|...|.+++|.|..+|+...+..+|..++.+.++++++.+|.++++.|+++||..++... +.+.+..
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~-----p~s~i~d 154 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY-----PESDLED 154 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC-----ChhHHHH
Confidence 44566777888888888888888888888888888888888888888888888888888888877653 2455555
Q ss_pred HHHhh
Q psy6108 88 AFQVF 92 (131)
Q Consensus 88 ~f~~~ 92 (131)
++..+
T Consensus 155 i~~~W 159 (463)
T KOG0036|consen 155 IYDFW 159 (463)
T ss_pred HHHhh
Confidence 54444
No 66
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.68 E-value=1.9e-07 Score=53.87 Aligned_cols=63 Identities=8% Similarity=0.210 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHH
Q psy6108 43 PTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYE 122 (131)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~ 122 (131)
.....+...|..+|.+++|.|+..|...+. . ...+..+..+|..+|.|+||.||++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----------------------~~~e~~~~~f~~~~D~n~Dg~IS~~ 100 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L----------------------DPNEHCIKPFFESCDLDKDGSISLD 100 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c----------------------cchHHHHHHHHHHHCCCCCCCCCHH
Confidence 455677889999999999999999999765 1 0225557889999999999999999
Q ss_pred HHHHHHh
Q psy6108 123 EFAKVMT 129 (131)
Q Consensus 123 eF~~~~~ 129 (131)
||...+.
T Consensus 101 Ef~~cl~ 107 (116)
T cd00252 101 EWCYCFI 107 (116)
T ss_pred HHHHHHh
Confidence 9999874
No 67
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.67 E-value=5.9e-08 Score=42.85 Aligned_cols=30 Identities=37% Similarity=0.718 Sum_probs=25.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHH-HcC
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMR-AIG 40 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~-~~~ 40 (131)
++..+|..+|.+++|+|+.+||+.++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 477899999999999999999999998 554
No 68
>KOG4251|consensus
Probab=98.62 E-value=1.6e-07 Score=60.07 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc---CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHH
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAI---GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAE 84 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 84 (131)
.-..+..+|.+.|.+-+|.||..|+++.+..- .+.-..++-+..|..+|++++|.|+++||..-+....+. ...+.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskgh-sekev 177 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGH-SEKEV 177 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCc-chHHH
Confidence 34678899999999999999999999887652 222233444567899999999999999997766544221 11111
Q ss_pred HH--------------HHHHhhCcC----------CCCCCHHH-----------------HHHHHHhhCCCCCCceeHHH
Q psy6108 85 LL--------------EAFQVFDKD----------GEKLSDQE-----------------VDELIGLADENNTGHVRYEE 123 (131)
Q Consensus 85 ~~--------------~~f~~~d~~----------~~~ls~~~-----------------~~~~~~~~d~~~dg~i~~~e 123 (131)
+. ..|..-+++ ..-+|+++ +..++..+|.|+|.+++..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 11 111111111 11333333 56677788999999999999
Q ss_pred HHHHH
Q psy6108 124 FAKVM 128 (131)
Q Consensus 124 F~~~~ 128 (131)
|+...
T Consensus 258 Fislp 262 (362)
T KOG4251|consen 258 FISLP 262 (362)
T ss_pred hhcCC
Confidence 98754
No 69
>PF14658 EF-hand_9: EF-hand domain
Probab=98.62 E-value=3.3e-07 Score=47.12 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=54.4
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCC-CCCHHHHHHHHHhhCCCCC-CceeHHHHHHH
Q psy6108 50 DLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE-KLSDQEVDELIGLADENNT-GHVRYEEFAKV 127 (131)
Q Consensus 50 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~-~ls~~~~~~~~~~~d~~~d-g~i~~~eF~~~ 127 (131)
..|..||..+.|.|...+.+.+++.. +. ..++.+++.+...+|+++. |.|++++|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~--------------------~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV--------------------TGRSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH--------------------cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 36889999999999999999999876 44 6888899999999999997 99999999999
Q ss_pred Hhc
Q psy6108 128 MTL 130 (131)
Q Consensus 128 ~~~ 130 (131)
|+.
T Consensus 62 M~~ 64 (66)
T PF14658_consen 62 MRD 64 (66)
T ss_pred HHH
Confidence 874
No 70
>KOG0377|consensus
Probab=98.59 E-value=3.1e-07 Score=63.29 Aligned_cols=66 Identities=20% Similarity=0.377 Sum_probs=58.6
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAI----GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
..+..+|+..|.|++|.||.+||+++..-+ ....+..++..+...+|-+++|.|+++||+.++...
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 456788999999999999999999986654 567889999999999999999999999999998754
No 71
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.58 E-value=3.2e-07 Score=44.62 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=41.1
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 26 KIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
.++..|++.+|+.+++.+++..+..+|+.+|.+++|++..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999875
No 72
>KOG0751|consensus
Probab=98.56 E-value=1.8e-06 Score=60.41 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GR-NPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
++++..+...|...+.++..+++.++|.+..-.+ +. ..+++.+..+-...|..+||.|+|+||+.+-..++ .+..
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~pDa 108 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---APDA 108 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---CchH
Confidence 4555555556667788899999999998876554 43 35555556666667888999999999999877654 3456
Q ss_pred HHHHHHHhhCcCCC-CCCHHHHHHHHHh
Q psy6108 84 ELLEAFQVFDKDGE-KLSDQEVDELIGL 110 (131)
Q Consensus 84 ~~~~~f~~~d~~~~-~ls~~~~~~~~~~ 110 (131)
....+|+.+|+.|. ..|.+++..+|..
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 77889999999854 4777777777765
No 73
>KOG2562|consensus
Probab=98.51 E-value=1.3e-06 Score=60.47 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=83.8
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC----CCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD----PDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
+...+.-.|-.+|.|++|.|+.+++...-.. .++.-.+.++|..+. ...+|+++|++|+-++... .......
T Consensus 276 ~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~ 351 (493)
T KOG2562|consen 276 HFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPA 351 (493)
T ss_pred HHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCcc
Confidence 3334444578889999999999998875332 356777889999432 3468999999999998877 3445557
Q ss_pred HHHHHHHhhCcCCC-CCCHHH-------------------------HHHHHHhhCCCCCCceeHHHHHH
Q psy6108 84 ELLEAFQVFDKDGE-KLSDQE-------------------------VDELIGLADENNTGHVRYEEFAK 126 (131)
Q Consensus 84 ~~~~~f~~~d~~~~-~ls~~~-------------------------~~~~~~~~d~~~dg~i~~~eF~~ 126 (131)
.+...|+-+|.+|. .|+..+ +.+++..+.+...++|++.+|..
T Consensus 352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 88889999998843 233333 45566666777889999999876
No 74
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.46 E-value=4.1e-07 Score=38.03 Aligned_cols=25 Identities=20% Similarity=0.566 Sum_probs=22.5
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHH
Q psy6108 104 VDELIGLADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 104 ~~~~~~~~d~~~dg~i~~~eF~~~~ 128 (131)
++.+|..+|.|+||.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.42 E-value=6.5e-06 Score=45.27 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=52.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy6108 48 LEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKV 127 (131)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~ 127 (131)
+-.+|+.|. +..+.++..||...+..-.+ ... +..-.+..++.+|+..|.|+||.|++.||+.+
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp---------~~l------~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~L 73 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFS---------EFL------KNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSL 73 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhH---------HHH------cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 446788886 55679999999999975422 111 23457788999999999999999999999998
Q ss_pred Hhc
Q psy6108 128 MTL 130 (131)
Q Consensus 128 ~~~ 130 (131)
+..
T Consensus 74 v~~ 76 (91)
T cd05024 74 IAG 76 (91)
T ss_pred HHH
Confidence 753
No 76
>KOG0046|consensus
Probab=98.38 E-value=3e-06 Score=59.54 Aligned_cols=72 Identities=26% Similarity=0.442 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP---TEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.+|.+++..+++.|...| +++|+|+..++..++.+.+... ..++++.++...+.+.+|+|+|++|+..+...
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 578999999999999999 9999999999999999875443 57888999999999999999999999976655
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.34 E-value=1.1e-06 Score=36.73 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=18.4
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHH
Q psy6108 12 WKEAFALFDKNGSGKIVSKYVGTV 35 (131)
Q Consensus 12 ~~~~F~~~D~~~~g~i~~~e~~~~ 35 (131)
+++.|..+|.|++|.|+..||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356788888888888888888764
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.30 E-value=2.5e-06 Score=58.98 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
....+..+|..+|.+++|+|+.+||.. +..+|..+|.+++|.|+++||...+..
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 345678889999999999999999842 467899999999999999999998875
No 79
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.27 E-value=2.3e-07 Score=53.38 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKL 71 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 71 (131)
....+.=.|..+|.+++|.|+..|+..+...+ .+...-+..++..+|.+++|.|++.|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34455667999999999999999999876544 466667889999999999999999999763
No 80
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.23 E-value=7.9e-06 Score=56.54 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHhhCcCCC-CCCHHHH---HHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 77 PNVDSTAELLEAFQVFDKDGE-KLSDQEV---DELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 77 ~~~~~~~~~~~~f~~~d~~~~-~ls~~~~---~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
+.......++.+|+.+|.+|. .++.+++ +.+|..+|.|+||.|+++||...+..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 333444555566666666543 3444443 67899999999999999999998764
No 81
>KOG0041|consensus
Probab=98.20 E-value=6.4e-06 Score=51.31 Aligned_cols=65 Identities=22% Similarity=0.428 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHH
Q psy6108 46 QELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFA 125 (131)
Q Consensus 46 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~ 125 (131)
..+..+|..||.+.||.|++.|...++..+ |.+-|-=-+..+++.+|.|.||+|++-+|+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL--------------------gapQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL--------------------GAPQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh--------------------CCchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 445678999999999999999999999876 444444557889999999999999999998
Q ss_pred HHHhc
Q psy6108 126 KVMTL 130 (131)
Q Consensus 126 ~~~~~ 130 (131)
-.++.
T Consensus 159 LIfrk 163 (244)
T KOG0041|consen 159 LIFRK 163 (244)
T ss_pred HHHHH
Confidence 77654
No 82
>KOG0169|consensus
Probab=98.19 E-value=3.1e-05 Score=56.76 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
.......-+..+|..+|++++|+++..+...++..++..+....+.++++.++..+++++...++..+....... .
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----p 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----P 205 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----c
Confidence 344555667888999999999999999999999999999999999999999988899999999999998766332 2
Q ss_pred HHHHHHHhhCcCCCCCCHHHHHHHHHh
Q psy6108 84 ELLEAFQVFDKDGEKLSDQEVDELIGL 110 (131)
Q Consensus 84 ~~~~~f~~~d~~~~~ls~~~~~~~~~~ 110 (131)
.+...|..+..++..++.+++..++..
T Consensus 206 ev~~~f~~~s~~~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 206 EVYFLFVQYSHGKEYLSTDDLLRFLEE 232 (746)
T ss_pred hHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 666666666555445555554444443
No 83
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.15 E-value=5.2e-06 Score=36.47 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 103 EVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 103 ~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
++..+|+.+|.|++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 84
>KOG1029|consensus
Probab=98.06 E-value=0.00012 Score=54.01 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+|+++-.+-...|..+- .+.|+|+..+-+.++...+ ++...+..||-..|.++||+++..||-.+|...
T Consensus 10 vT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred cchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 56777777778888774 4569999999999987766 778889999999999999999999998777644
No 85
>KOG2643|consensus
Probab=98.06 E-value=3.9e-05 Score=53.06 Aligned_cols=113 Identities=24% Similarity=0.386 Sum_probs=76.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHH------cCC--------C-CCHHHHHH--HHHhcCCCCCCcccHHHHHHHHh
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRA------IGR--------N-PTEQELED--LLKEVDPDDVGSVDFESFLKLMA 73 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~------~~~--------~-~~~~~~~~--~~~~~d~~~~g~i~~~ef~~~~~ 73 (131)
.+.-+|..+|.|++|.|+.+||..+..- ++. . .-...+.. ...-+..++++++++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 3455789999999999999999876531 121 0 01112222 33345778899999999999998
Q ss_pred ccCCCCCCHHHHHHHHHhhCcCCC-CCCHHHHHHHHHh-------------------hCCCCCCceeHHHHHHHHh
Q psy6108 74 NHIPNVDSTAELLEAFQVFDKDGE-KLSDQEVDELIGL-------------------ADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 74 ~~~~~~~~~~~~~~~f~~~d~~~~-~ls~~~~~~~~~~-------------------~d~~~dg~i~~~eF~~~~~ 129 (131)
.+ +.+.++.-|..+|+... .+++.++..++-. ++.+ +-.||++||..++.
T Consensus 314 ~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 NL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 74 55778888999998754 6777665444333 3322 45699999988753
No 86
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.99 E-value=7.3e-05 Score=42.38 Aligned_cols=62 Identities=24% Similarity=0.481 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHH
Q psy6108 45 EQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEF 124 (131)
Q Consensus 45 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF 124 (131)
...+..+|...+. ++|.|+-.+...++.. ..|+.+.+..|+...|.+++|+++.+||
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~----------------------S~L~~~~L~~IW~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK----------------------SGLPRDVLAQIWNLADIDNDGKLDFEEF 65 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH----------------------TTSSHHHHHHHHHHH-SSSSSEEEHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH----------------------cCCCHHHHHHHHhhhcCCCCCcCCHHHH
Confidence 3455678888764 6788988888877763 4588899999999999999999999999
Q ss_pred HHHHh
Q psy6108 125 AKVMT 129 (131)
Q Consensus 125 ~~~~~ 129 (131)
+-+|.
T Consensus 66 ~iAm~ 70 (104)
T PF12763_consen 66 AIAMH 70 (104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 87
>KOG0038|consensus
Probab=97.90 E-value=4.9e-05 Score=45.13 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=30.8
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHH----HHHHhcCCCCCCcccHHHHHHHHh
Q psy6108 15 AFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELE----DLLKEVDPDDVGSVDFESFLKLMA 73 (131)
Q Consensus 15 ~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~----~~~~~~d~~~~g~i~~~ef~~~~~ 73 (131)
+|+.+|-|++++|-..++...+..+ ...++.+++. +++...|.+++|++++.+|-+++.
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 3555555566666666665555554 2234444332 334444556666666666655544
No 88
>KOG0040|consensus
Probab=97.89 E-value=4.8e-05 Score=59.67 Aligned_cols=65 Identities=25% Similarity=0.483 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCC-------CHHHHHHHHHhhCCCCCCc
Q psy6108 46 QELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKL-------SDQEVDELIGLADENNTGH 118 (131)
Q Consensus 46 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~l-------s~~~~~~~~~~~d~~~dg~ 118 (131)
.++..+|+.+|.+.+|++++.+|..+++.. |+.+ .+.+++.++..+|++.+|+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl--------------------gY~lpmvEe~~~~p~fe~~ld~vDP~r~G~ 2312 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL--------------------GYDLPMVEEGEPEPEFEEILDLVDPNRDGY 2312 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc--------------------CCCCcccccCCCChhHHHHHHhcCCCCcCc
Confidence 344568999999999999999999999976 3332 2347999999999999999
Q ss_pred eeHHHHHHHHhc
Q psy6108 119 VRYEEFAKVMTL 130 (131)
Q Consensus 119 i~~~eF~~~~~~ 130 (131)
|+..||+.+|.+
T Consensus 2313 Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2313 VSLQDYMAFMIS 2324 (2399)
T ss_pred ccHHHHHHHHHh
Confidence 999999999975
No 89
>KOG4251|consensus
Probab=97.81 E-value=0.00019 Score=46.37 Aligned_cols=116 Identities=23% Similarity=0.255 Sum_probs=67.3
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCH-------------HHHHHHHHhcCCCC---------CCcccHHHHH
Q psy6108 13 KEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTE-------------QELEDLLKEVDPDD---------VGSVDFESFL 69 (131)
Q Consensus 13 ~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~-------------~~~~~~~~~~d~~~---------~g~i~~~ef~ 69 (131)
+..|+..|++++|+|+.+|++--+... |..-.+ .+-.+.+..-+.+. +-.++-.||.
T Consensus 143 kthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEfl 222 (362)
T KOG4251|consen 143 KTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFL 222 (362)
T ss_pred hhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHH
Confidence 345788899999999999997654432 211100 00011222222222 3344457888
Q ss_pred HHHhccCCCCCCHHHHHHHHHhhCcCCC----------------------CCCH----HHHHHHHHhhCCCCCCceeHHH
Q psy6108 70 KLMANHIPNVDSTAELLEAFQVFDKDGE----------------------KLSD----QEVDELIGLADENNTGHVRYEE 123 (131)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~f~~~d~~~~----------------------~ls~----~~~~~~~~~~d~~~dg~i~~~e 123 (131)
.++..-.....-+..++.+.+.+|++|. .+.. +...++=+.+|.|.||.++.+|
T Consensus 223 sFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeE 302 (362)
T KOG4251|consen 223 SFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEE 302 (362)
T ss_pred HHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHH
Confidence 7776443333444567778888888832 2222 1233344567889999999888
Q ss_pred HHHHH
Q psy6108 124 FAKVM 128 (131)
Q Consensus 124 F~~~~ 128 (131)
.-.++
T Consensus 303 Le~y~ 307 (362)
T KOG4251|consen 303 LEDYV 307 (362)
T ss_pred HHhhc
Confidence 77654
No 90
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.73 E-value=0.00022 Score=34.78 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 96 ~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
...+++.-+..+|+..|.+++|.+.-+||..++.
T Consensus 15 NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 15 NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 5678888899999999999999999999999875
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.70 E-value=7.1e-05 Score=31.34 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 103 EVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 103 ~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
++..+|..+|.+++|.|++.+|..++++
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3577899999999999999999999875
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.64 E-value=9.5e-05 Score=30.92 Aligned_cols=27 Identities=48% Similarity=0.721 Sum_probs=18.5
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHH
Q psy6108 12 WKEAFALFDKNGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 12 ~~~~F~~~D~~~~g~i~~~e~~~~l~~ 38 (131)
+..+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 455677777777777777777776653
No 93
>KOG4065|consensus
Probab=97.57 E-value=0.00062 Score=38.89 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc------CC----CCCHHHHHH----HHHhcCCCCCCcccHHHH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI------GR----NPTEQELED----LLKEVDPDDVGSVDFESF 68 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~----~~~~~d~~~~g~i~~~ef 68 (131)
++||++.+ ...|...|-|++|.|+--|+.+++... |. -+++.++.+ +++.-|.+++|.|+|-||
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 45666654 345888999999999999999988643 21 133455544 455557889999999999
Q ss_pred HHH
Q psy6108 69 LKL 71 (131)
Q Consensus 69 ~~~ 71 (131)
+..
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 864
No 94
>KOG1955|consensus
Probab=97.57 E-value=0.00038 Score=49.19 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
..++++-+.+..-|+..-+|.+|.|+-.--+.++.+.. ++-.++..||..+|.+.||-+++.|||+.+....
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 46899999999999999999999999988888887654 6778899999999999999999999999987653
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.56 E-value=0.00052 Score=37.22 Aligned_cols=65 Identities=18% Similarity=0.426 Sum_probs=52.5
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHhccC
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAI-GR-NPTEQELEDLLKEVDPD----DVGSVDFESFLKLMANHI 76 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~~ 76 (131)
++..+|..+.. +.+.||.++|..+|..- +. ..+...+..++..+.++ ..+.+++.+|..++....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778998865 78999999999999874 32 46899999999988543 468999999999998754
No 96
>KOG4666|consensus
Probab=97.54 E-value=0.00036 Score=46.81 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCC-CC
Q psy6108 22 NGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK-LS 100 (131)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~-ls 100 (131)
.+.+.|...||...++- +.. ..++.+|..+|.+++|.++|.+....+..+.+.......+..+|+.|+.+... ..
T Consensus 239 ~kg~~igi~efa~~l~v---pvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLRV---PVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred ccCCCcceeEeeeeeec---chh-hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccc
Confidence 34556666666554332 222 55677888888888888999888888888877778888888888888877332 22
Q ss_pred HHHHH---------------HHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 101 DQEVD---------------ELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 101 ~~~~~---------------~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
++++- -+|..++...+|+|++.+|.+++.
T Consensus 315 e~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 315 EHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hHHHHHHHHHhcCcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 33332 355667888899999999998864
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.51 E-value=0.00043 Score=37.54 Aligned_cols=65 Identities=20% Similarity=0.432 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCC----CCCceeHH
Q psy6108 47 ELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADEN----NTGHVRYE 122 (131)
Q Consensus 47 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~----~dg~i~~~ 122 (131)
++..+|..+.. +.+.++.++|..++....+. ..++.+++..++..+..+ ..+.++++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~------------------~~~~~~~~~~li~~~~~~~~~~~~~~lt~~ 61 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGE------------------PRLTDEQAKELIEKFEPDERNRQKGQLTLE 61 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-------------------TTSSHHHHHHHHHHHHHHHHHHCTTEEEHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc------------------ccCcHHHHHHHHHHHccchhhcccCCcCHH
Confidence 46789999955 78899999999999865322 134677777777776543 46899999
Q ss_pred HHHHHHhc
Q psy6108 123 EFAKVMTL 130 (131)
Q Consensus 123 eF~~~~~~ 130 (131)
+|..+|.+
T Consensus 62 gF~~fL~S 69 (83)
T PF09279_consen 62 GFTRFLFS 69 (83)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHCC
Confidence 99999875
No 98
>KOG1707|consensus
Probab=97.48 E-value=0.0017 Score=46.92 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH-cCCCCCHHHHHHHHHhcC---CC--CCCcccHHHHHHHHhcc
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRA-IGRNPTEQELEDLLKEVD---PD--DVGSVDFESFLKLMANH 75 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d---~~--~~g~i~~~ef~~~~~~~ 75 (131)
.|.+..+..|..+|...|.|.+|.++-.|+-.+=.. ++-++....+..+....+ ++ .++.++...|+-....+
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 367889999999999999999999999998776433 677788777766544442 22 23456777776664433
No 99
>KOG0751|consensus
Probab=97.38 E-value=0.0013 Score=46.73 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=35.7
Q ss_pred hcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 19 FDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 19 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.|..++|.|+.+||+.+=. -.+.++......|..+|..++|.++++++..+++..
T Consensus 83 aD~tKDglisf~eF~afe~--~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFES--VLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hhhcccccccHHHHHHHHh--hccCchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3556667777777765422 233456666677777777777777777777776644
No 100
>KOG0035|consensus
Probab=97.32 E-value=0.0022 Score=48.52 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCH-----HHHHHHHHhcCCCCCCcccHHHHHHHHhccCCC
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTE-----QELEDLLKEVDPDDVGSVDFESFLKLMANHIPN 78 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 78 (131)
.++..+.++...|+.++....|.++.+++..+|..+|+.... .++.+++...+....|.+++.+|...+......
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 356788899999999999999999999999999999987764 344555666677777999999999999988777
Q ss_pred CCCHHHHHHHHHhhCcCCCCCCHHHH
Q psy6108 79 VDSTAELLEAFQVFDKDGEKLSDQEV 104 (131)
Q Consensus 79 ~~~~~~~~~~f~~~d~~~~~ls~~~~ 104 (131)
......+..+|+.+-++...+..+++
T Consensus 821 l~~~~r~i~s~~d~~ktk~~lL~eEL 846 (890)
T KOG0035|consen 821 LDTELRAILAFEDWAKTKAYLLLEEL 846 (890)
T ss_pred hcHHHHHHHHHHHHHcchhHHHHHHH
Confidence 77888888899888777554444443
No 101
>KOG0042|consensus
Probab=97.32 E-value=0.00063 Score=48.89 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCC
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIP 77 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 77 (131)
+.++++++...+..|..+|.++.|+++..+...+|...+...+...+..+....+..-+|.+...+|...++....
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999888899999999999999888999999999999887753
No 102
>KOG1029|consensus
Probab=97.22 E-value=0.00078 Score=50.05 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 6 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
.....+...+|+.+|+..+|++|...-+.+|...+ ++...+..||..-|.++||+++-+||+-.+..
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34556778999999999999999999999998766 77888999999999999999999999877653
No 103
>KOG2562|consensus
Probab=97.17 E-value=0.0055 Score=43.13 Aligned_cols=116 Identities=13% Similarity=0.217 Sum_probs=67.2
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcC--CCCC-------------HHHHHHHHHhcCCCCCCcccHHHHHHHH-----h
Q psy6108 14 EAFALFDKNGSGKIVSKYVGTVMRAIG--RNPT-------------EQELEDLLKEVDPDDVGSVDFESFLKLM-----A 73 (131)
Q Consensus 14 ~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~-------------~~~~~~~~~~~d~~~~g~i~~~ef~~~~-----~ 73 (131)
+.+..++..+.|++...+|+..|..+- .+++ ...++++|=.++..+.|+|+..+.+..- .
T Consensus 178 ~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~ 257 (493)
T KOG2562|consen 178 QFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALL 257 (493)
T ss_pred HHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHH
Confidence 345555666667777666666666541 1110 1233556666778888888877764432 1
Q ss_pred ccC--------CCCCCHHHHHHH---HHhhCcC--------------CCCCCHHHHHHHHHh----hCCCCCCceeHHHH
Q psy6108 74 NHI--------PNVDSTAELLEA---FQVFDKD--------------GEKLSDQEVDELIGL----ADENNTGHVRYEEF 124 (131)
Q Consensus 74 ~~~--------~~~~~~~~~~~~---f~~~d~~--------------~~~ls~~~~~~~~~~----~d~~~dg~i~~~eF 124 (131)
... ......+....+ |-.+|++ ...++.--++.+|.. .-.-.+|+++|++|
T Consensus 258 ~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdF 337 (493)
T KOG2562|consen 258 ELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDF 337 (493)
T ss_pred HHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHH
Confidence 111 011122233333 6666766 235666778888883 33556888999999
Q ss_pred HHHHh
Q psy6108 125 AKVMT 129 (131)
Q Consensus 125 ~~~~~ 129 (131)
+-++.
T Consensus 338 v~Fil 342 (493)
T KOG2562|consen 338 VDFIL 342 (493)
T ss_pred HHHHH
Confidence 88775
No 104
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.91 E-value=0.0014 Score=37.76 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCce
Q psy6108 40 GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHV 119 (131)
Q Consensus 40 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i 119 (131)
........+.-.|..+|.+++|.++..|+..+...+ ...+..+..++...|.|+||.|
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l----------------------~~~e~C~~~F~~~CD~n~d~~I 105 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL----------------------MPPEHCARPFFRSCDVNKDGKI 105 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT----------------------STTGGGHHHHHHHH-TT-SSSE
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH----------------------hhhHHHHHHHHHHcCCCCCCCC
Confidence 344566777788999999999999988887665532 1233447778999999999999
Q ss_pred eHHHHHH
Q psy6108 120 RYEEFAK 126 (131)
Q Consensus 120 ~~~eF~~ 126 (131)
|+.|+..
T Consensus 106 s~~EW~~ 112 (113)
T PF10591_consen 106 SLDEWCN 112 (113)
T ss_dssp EHHHHHH
T ss_pred CHHHHcc
Confidence 9999875
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.51 E-value=0.031 Score=34.08 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=48.4
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHc---CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 12 WKEAFALFDKNGSGKIVSKYVGTVMRAI---GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 12 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
+...|..+-..+...|+...|..+++.. +..++...+..+|..+...+..+|+|++|+.++..+.
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3344444455666789999999999985 3458899999999998766677899999999988664
No 106
>KOG4065|consensus
Probab=96.50 E-value=0.021 Score=32.77 Aligned_cols=73 Identities=23% Similarity=0.273 Sum_probs=48.0
Q ss_pred CCHHHHH-HHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCC---CCCCHHHHHH----HHHhhCCC
Q psy6108 43 PTEQELE-DLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG---EKLSDQEVDE----LIGLADEN 114 (131)
Q Consensus 43 ~~~~~~~-~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~---~~ls~~~~~~----~~~~~d~~ 114 (131)
+++++++ .+|...|.++++.++=-|.+.++..... ..+... .-.|+.+++. +++.-|.|
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~-------------~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN 129 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHD-------------AHDSGHEPVPLSSEAELERLIDAVLDDDDFN 129 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhh-------------hhhcCCCCCCCCCHHHHHHHHHHHhcccccC
Confidence 4555544 4688888899998887777777664311 112221 1345556554 55566899
Q ss_pred CCCceeHHHHHHHH
Q psy6108 115 NTGHVRYEEFAKVM 128 (131)
Q Consensus 115 ~dg~i~~~eF~~~~ 128 (131)
+||.|+|-||++..
T Consensus 130 ~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 130 GDGVIDYGEFLKRQ 143 (144)
T ss_pred CCceeeHHHHHhhc
Confidence 99999999998753
No 107
>KOG0046|consensus
Probab=96.49 E-value=0.016 Score=41.67 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=49.8
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 50 DLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 50 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
.-|...| +++|+|+..+....+...... .....+++++.++...+.|.+|.|++++|+..+.
T Consensus 23 ~kF~~~d-~~~G~v~~~~l~~~f~k~~~~-----------------~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 23 EKFNKLD-DQKGYVTVYELPDAFKKAKLP-----------------LGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHhhc-CCCCeeehHHhHHHHHHhccc-----------------ccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 3466677 889999999998888754111 2345688899999999999999999999999765
Q ss_pred c
Q psy6108 130 L 130 (131)
Q Consensus 130 ~ 130 (131)
+
T Consensus 85 ~ 85 (627)
T KOG0046|consen 85 N 85 (627)
T ss_pred h
Confidence 3
No 108
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.36 E-value=0.033 Score=34.35 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---CCCcccHHHHHHHHhccCCCCC-CHHHHH
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPD---DVGSVDFESFLKLMANHIPNVD-STAELL 86 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~~~~~~~~~-~~~~~~ 86 (131)
.+++-..-+|.|++|.|.+-|-...++.+|+++.-..+..++-....+ ..+.+.-.-|.-.+..+.+... +.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSD---- 83 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSD---- 83 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCC----
Confidence 455566678999999999999999999999887776665554433211 1121111111111111110000 00
Q ss_pred HHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 87 EAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 87 ~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
=-.||.+| ...++.++++|.+++....+.+|+.|..+++..
T Consensus 84 --Sg~YD~eG-rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 84 --SGAYDTEG-RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred --ccccccCC-cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 00122212 455666777777777777777777777777653
No 109
>KOG3555|consensus
Probab=96.07 E-value=0.014 Score=39.84 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 5 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.+.-.-.+-=+|.++|.+.+|.|+..|++.+. +.-.+.-++.+|..+|.-.+|.|+-.|++-.+...
T Consensus 245 ~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 245 LPICKDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred CcchhhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 34445566678999999999999999998764 34677888999999999999999999999999865
No 110
>KOG4578|consensus
Probab=96.05 E-value=0.006 Score=41.23 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=47.9
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 15 AFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 15 ~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
-|..+|+++++.|...|++-+=.-+ ...-...-.+++++.+|.|+|.+|++.|+..++..-
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 4889999999999998865542222 233456667889999999999999999999988743
No 111
>PLN02952 phosphoinositide phospholipase C
Probab=95.80 E-value=0.21 Score=37.06 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=43.3
Q ss_pred CCCceeHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCC
Q psy6108 23 GSGKIVSKYVGTVMRAIG--RNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIP 77 (131)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 77 (131)
+.|.++.++|..+.+.+. ...++.++..+|..+.. +.+.++.++|..++....+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC
Confidence 458999999998877763 23478999999999965 4468999999999987643
No 112
>KOG0998|consensus
Probab=95.34 E-value=0.0096 Score=45.63 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+++.....+.++|...|.+.+|.|+..+.+..+.. .++....+..+|..++..+.|.+++.+|+-.+-..
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 56788999999999999999999999999998876 55888889999999999999999999987776554
No 113
>KOG1707|consensus
Probab=94.93 E-value=0.053 Score=39.63 Aligned_cols=71 Identities=15% Similarity=0.293 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC-CHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP-TEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
..|+++-+.-+..+|..+|.|++|-++..|+..++...+..+ ....... ..-.+..|.+++..|+..+.-.
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~---~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD---STVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc---cceecccceeehhhHHHHHHHH
Confidence 467889999999999999999999999999999998864332 0000000 0112257889999998876643
No 114
>KOG4666|consensus
Probab=94.90 E-value=0.038 Score=37.52 Aligned_cols=99 Identities=11% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHH
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEA 88 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (131)
..+...|..||.+++|.++..+....+.-+ +.+.+...++-.|+.++...||.+.-.++-.+++...+. ..-.+...
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeecccc
Confidence 455667777788888877777766666555 555666677777777777777777777776666654321 11122233
Q ss_pred HHhhCcC-CCCCCHHHHHHHHHh
Q psy6108 89 FQVFDKD-GEKLSDQEVDELIGL 110 (131)
Q Consensus 89 f~~~d~~-~~~ls~~~~~~~~~~ 110 (131)
|+..++. .-.++..++..+...
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHh
Confidence 4444433 224555555444443
No 115
>KOG3866|consensus
Probab=94.57 E-value=0.25 Score=33.56 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=57.9
Q ss_pred eHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCC-----CCH
Q psy6108 28 VSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK-----LSD 101 (131)
Q Consensus 28 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~-----ls~ 101 (131)
|..+++.+-..+ |+.++.-.-..+|...|.+++|.++-.+.-+.+..-+ ..+ ||..+.. +.+
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkEL---------EKv---YdpkNeeDDM~EmeE 292 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKEL---------EKV---YDPKNEEDDMKEMEE 292 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHH---------HHh---cCCCCcchHHHHHHH
Confidence 456677766554 5555555556788888999999999888877776432 111 1211110 011
Q ss_pred HH---HHHHHHhhCCCCCCceeHHHHHHHH
Q psy6108 102 QE---VDELIGLADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 102 ~~---~~~~~~~~d~~~dg~i~~~eF~~~~ 128 (131)
+. -+.+++.+|.|.|.-|+++||++.-
T Consensus 293 ErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 293 ERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred HHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 11 2458889999999999999999753
No 116
>KOG0169|consensus
Probab=94.57 E-value=0.75 Score=34.88 Aligned_cols=98 Identities=13% Similarity=0.238 Sum_probs=71.1
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQ 90 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 90 (131)
....+|+..+..+++.+...++..+...+...+ ++..+|..+..+ .+.++..+.+.++....
T Consensus 173 ~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q-------------- 234 (746)
T KOG0169|consen 173 KARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ-------------- 234 (746)
T ss_pred HHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhc--------------
Confidence 456677777888999999999999888776444 788888888554 88999999999987652
Q ss_pred hhCcCCCCCCHHHHHHHHHhhCC----CCCCceeHHHHHHHHhc
Q psy6108 91 VFDKDGEKLSDQEVDELIGLADE----NNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 91 ~~d~~~~~ls~~~~~~~~~~~d~----~~dg~i~~~eF~~~~~~ 130 (131)
.-...+.+.++.|++.+.. -..+.++++.|..+|.+
T Consensus 235 ----~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 235 ----GEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred ----ccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 1234555666666665532 34456888888888764
No 117
>KOG2243|consensus
Probab=94.48 E-value=0.1 Score=42.32 Aligned_cols=60 Identities=25% Similarity=0.428 Sum_probs=48.2
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 15 AFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 15 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.|..+|+|+.|.|+..+|..++.. ....+..++.-++.-...+.+...+|.+|+.-+...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 357789999999999999999876 344677777777777777788899999998876543
No 118
>KOG0998|consensus
Probab=94.05 E-value=0.073 Score=41.05 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCC----C-
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIP----N- 78 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----~- 78 (131)
+.+.....+...|...|+.++|.|+..+-..++...+ +....+..+|...|..+.|.++..+|...++.... .
T Consensus 5 ~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~ 82 (847)
T KOG0998|consen 5 LSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRE 82 (847)
T ss_pred CCCCccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccC
Confidence 3344446778899999999999999999888877655 78888999999999999999999999777664410 0
Q ss_pred ----------------------------C--------------CCHHHHHHHHHhhCcC--------------CCCCCHH
Q psy6108 79 ----------------------------V--------------DSTAELLEAFQVFDKD--------------GEKLSDQ 102 (131)
Q Consensus 79 ----------------------------~--------------~~~~~~~~~f~~~d~~--------------~~~ls~~ 102 (131)
. ........+|+...+. ...+..+
T Consensus 83 ~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~~g~~sg~~~~pil~~s~Lp~~ 162 (847)
T KOG0998|consen 83 LSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPSNGLLSGDKAKPILLNSKLPSD 162 (847)
T ss_pred cCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCCCCccccchhhhhhhcCCCChh
Confidence 0 0001233445555554 3366677
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 103 EVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 103 ~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
-+-.++...|.+.+|.++..+|.-.|.
T Consensus 163 ~l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 163 VLGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred hhccccccccccccCCCChhhhhhhhh
Confidence 777888889999999999999987764
No 119
>KOG3866|consensus
Probab=94.01 E-value=0.13 Score=34.78 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=45.8
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHH-c----CCCCCHHHH-----------HHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 14 EAFALFDKNGSGKIVSKYVGTVMRA-I----GRNPTEQEL-----------EDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 14 ~~F~~~D~~~~g~i~~~e~~~~l~~-~----~~~~~~~~~-----------~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
..|...|.+++|.++..|+..++.. + ........+ ..+++.+|.+++..|++++|+..-....
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 3467778999999999999888754 2 222222211 2368888999999999999999876553
No 120
>KOG1265|consensus
Probab=93.86 E-value=0.71 Score=35.87 Aligned_cols=87 Identities=11% Similarity=0.231 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHh
Q psy6108 31 YVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGL 110 (131)
Q Consensus 31 e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~ 110 (131)
.|..++..+ .+..+++.+|..+..++.-.++.++++.++...... ..+..+. -....+..+..++++
T Consensus 209 ~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrD----pRLNeil------fp~~~~~r~~~liek 275 (1189)
T KOG1265|consen 209 KFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRD----PRLNEIL------FPPADPRRIQSLIEK 275 (1189)
T ss_pred HHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccC----cchhhhh------cCCCCHHHHHHHHHH
Confidence 344444444 556777888888876666788888888887754221 2233221 235678888889998
Q ss_pred hCCCC----CCceeHHHHHHHHhc
Q psy6108 111 ADENN----TGHVRYEEFAKVMTL 130 (131)
Q Consensus 111 ~d~~~----dg~i~~~eF~~~~~~ 130 (131)
+..|. +|+|+-+-|+.++..
T Consensus 276 yEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 276 YEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCchhhhhccccchhhhHHHhhC
Confidence 87654 678999999998864
No 121
>KOG1955|consensus
Probab=93.64 E-value=0.33 Score=35.12 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 83 AELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 83 ~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
..+++.|. ...|.-.|+..|++..|.+.||.+++.||+.+|.
T Consensus 251 saAknFFt-----KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 251 SAAKNFFT-----KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhh-----hccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 45555553 3468889999999999999999999999999875
No 122
>KOG3555|consensus
Probab=93.55 E-value=0.21 Score=34.32 Aligned_cols=94 Identities=9% Similarity=0.129 Sum_probs=60.6
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc---CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHH
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAI---GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLE 87 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (131)
++...|..+=.+.++......+..+-..+ -++.-...+.-||...|.+.++.++..|...+....
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk------------ 279 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK------------ 279 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC------------
Confidence 44555665555555555554444443333 233456788899999999999999998887776543
Q ss_pred HHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy6108 88 AFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 88 ~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 128 (131)
.+.-+..+|...|...||.|+-.|+...+
T Consensus 280 ------------nE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 280 ------------NEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred ------------chhHHHHHHhhhcccccCccccchhhhhh
Confidence 12235566777777777777777776554
No 123
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.78 E-value=0.57 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 97 EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 97 ~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
..++..+++-+|..+-......|+|++|+.+|.
T Consensus 36 ~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 36 KKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 349999999999998766667799999999875
No 124
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.69 E-value=0.86 Score=28.33 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-------CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAI-------GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLM 72 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (131)
+++.++|.+++..+.+.+|..|+..++..- |.....-+...++... .+.+|.+.-++...++
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 567788999998888899999999988762 1222223333333333 4457777666555443
No 125
>KOG2301|consensus
Probab=92.32 E-value=0.096 Score=42.87 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP----TEQELEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
.|++.+.++++++|..+|++.+|.|...++..+++.+..++ ..+. +.+...+....+|.|++.+-+-++....
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 37889999999999999999999999999999998864332 2222 3333344455788999999988887654
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.30 E-value=1.1 Score=24.74 Aligned_cols=63 Identities=13% Similarity=0.300 Sum_probs=41.9
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-----------CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAI-----------GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.+++-+|... .|++|.++...|..+|... .++..+..++..|... .....|+.+.|+..+..-
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 5677788888 6888999999988887642 1233778888888887 245579999999999864
No 127
>KOG4347|consensus
Probab=92.24 E-value=0.25 Score=36.67 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHhhhh-----------cCCCCC---ceeHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCCCCcccHH
Q psy6108 2 LTLDEEQITEWKEAFALF-----------DKNGSG---KIVSKYVGTVMRAIG-RNPTEQELEDLLKEVDPDDVGSVDFE 66 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~-----------D~~~~g---~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ 66 (131)
.+|+..+++.++.+|..- |++..+ ++....+..+++.+- +..+.-.+.++|...|.+.+|.++|.
T Consensus 496 ~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~ 575 (671)
T KOG4347|consen 496 TSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFK 575 (671)
T ss_pred CccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHH
Confidence 367888899998888642 111111 233344444444432 22334455789999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHhhCcCCCC
Q psy6108 67 SFLKLMANHIPNVDSTAELLEAFQVFDKDGEK 98 (131)
Q Consensus 67 ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ 98 (131)
+++..+...... ..-+.+.-.|+.+|.++..
T Consensus 576 ~lv~gL~~l~~~-~~~ek~~l~y~lh~~p~~~ 606 (671)
T KOG4347|consen 576 DLVSGLSILKAG-DALEKLKLLYKLHDPPADE 606 (671)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHhhccCCccc
Confidence 999999877433 4457788889999988653
No 128
>KOG4347|consensus
Probab=92.17 E-value=0.28 Score=36.42 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=48.6
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q psy6108 12 WKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESF 68 (131)
Q Consensus 12 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 68 (131)
+..+|+.+|.+.+|.|+..++...|..+...-..+.+..+++.++.+++ ..+.++.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4788999999999999999999999988666667778889999999888 7777776
No 129
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.59 E-value=0.56 Score=28.09 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=35.6
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC-------CCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcC
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD-------PDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD 95 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-------~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~ 95 (131)
+.||+.||.++-.-..+ ....+..++..+. -+..+.|+|+.|..++..++....+.+--...|..|-+.
T Consensus 6 ~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 56777777664222211 1223333333332 123568999999999999987777777777888777654
No 130
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=90.40 E-value=0.33 Score=28.00 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 43 PTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
++++++++++..+-.+..|++.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 67899999999999999999999999988764
No 131
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.29 E-value=0.51 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHH
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMR 37 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~ 37 (131)
+++...|+.+ .+++++||..+|+..|.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 4667788888 67789999999999753
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=89.35 E-value=4.4 Score=30.47 Aligned_cols=72 Identities=13% Similarity=0.320 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHHhccC-CCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCC------------------------
Q psy6108 59 DVGSVDFESFLKLMANHI-PNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADE------------------------ 113 (131)
Q Consensus 59 ~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~------------------------ 113 (131)
+.|.++|.+|..+.+.+. .....+..+..+|..+..++..++.+++..++.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 357999999998887663 2334678999999999766445555554444433221
Q ss_pred -CCCCceeHHHHHHHHhc
Q psy6108 114 -NNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 114 -~~dg~i~~~eF~~~~~~ 130 (131)
...+.++++.|..+|.+
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 12234788888888764
No 133
>KOG2871|consensus
Probab=89.33 E-value=0.55 Score=32.72 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q psy6108 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPT-EQELEDLLKEVDPDDVGSVDFESFLKLMA 73 (131)
Q Consensus 9 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (131)
-.++++.|..+|+.++|+|+..-++.++..++.... ...+..+-...|+..-|.|-..+|+.-+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 467888999999999999999999999998885444 44455555667777777777777665544
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=88.92 E-value=4.2 Score=30.37 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCC-CCHHHHHHHHHhh
Q psy6108 41 RNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNV-DSTAELLEAFQVF 92 (131)
Q Consensus 41 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~ 92 (131)
...+++++..+|..+.. ++.++.++|..++....+.. ...+.+..+++.+
T Consensus 19 ~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~ 69 (567)
T PLN02228 19 TREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSV 69 (567)
T ss_pred CCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHh
Confidence 34578889999999854 35799999999988764321 2233444444444
No 135
>KOG4004|consensus
Probab=87.74 E-value=0.3 Score=31.00 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=43.0
Q ss_pred hhhhcC-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 16 FALFDK-NGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 16 F~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
|..+|. ..+|++|.-|+.-+- ..+.+.+.-..++|..+|.+++|.|+..|+...+...
T Consensus 193 f~qld~~p~d~~~sh~el~pl~--ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gik 251 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR--APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 251 (259)
T ss_pred eccccCCCcccccccccccccc--CCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcc
Confidence 344554 357899988876431 1334556667899999999999999999999888765
No 136
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=86.47 E-value=3.8 Score=22.40 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=46.8
Q ss_pred CCCHHHHHHH-HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 3 TLDEEQITEW-KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 3 ~l~~~~~~~~-~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.+++.+.+++ .+.|. ..-.|+..+|+..|..........+...+-..+|...++.||--||-.+.+-.
T Consensus 3 rITK~eA~~FW~~~Fg-----~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFG-----KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp --SSHHHHHHHHHHHT-----T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eeccHHHHHHHHHHCC-----CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 4555555554 44442 23579999999999997666666777888888999999999988887776644
No 137
>KOG0042|consensus
Probab=86.19 E-value=2.1 Score=31.76 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 96 ~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
+...+++.+..++.++|.+.+|.+.+.||.++++.
T Consensus 623 ~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 623 NVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred cCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 56788999999999999999999999999998763
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.88 E-value=4.8 Score=30.14 Aligned_cols=63 Identities=11% Similarity=0.321 Sum_probs=45.5
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHhcc
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAIGR--NPTEQELEDLLKEVDP-DDVGSVDFESFLKLMANH 75 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~ 75 (131)
++..+|..+-. ++.++.++|..+|..-.. ..+.+.+..++..+.. .+.+.++++.|..++...
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 44555666543 479999999999987532 3567778888887632 245679999999999764
No 139
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=85.66 E-value=2.6 Score=19.85 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhcC--CCCCceeHHHHHHHHHH
Q psy6108 7 EQITEWKEAFALFDK--NGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 7 ~~~~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~ 38 (131)
..+..+..+|..+.. .....++..||+.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456677788888752 34578999999998865
No 140
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.11 E-value=6.5 Score=29.51 Aligned_cols=68 Identities=10% Similarity=0.231 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCC-CCCCceeH
Q psy6108 43 PTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADE-NNTGHVRY 121 (131)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~-~~dg~i~~ 121 (131)
.+..++..+|..+.. ++.++.++|..++....+.. ..+.+.+..++..+.. -..+.+++
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~------------------~~~~~~~~~ii~~~~~~~~~~~~~~ 81 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQD------------------KATREDAQSIINSASSLLHRNGLHL 81 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCc------------------cCCHHHHHHHHHhhhhhhhccCcCH
Confidence 456689999999854 46899999999988753321 1334444444444321 23456778
Q ss_pred HHHHHHHhc
Q psy6108 122 EEFAKVMTL 130 (131)
Q Consensus 122 ~eF~~~~~~ 130 (131)
+.|..+|.+
T Consensus 82 ~gF~~yL~s 90 (581)
T PLN02222 82 DAFFKYLFG 90 (581)
T ss_pred HHHHHHhcC
Confidence 888777754
No 141
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=85.07 E-value=3.2 Score=20.30 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLK 53 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 53 (131)
..++++++..|...|.. +.+++..+...+...+| ++...+...|.
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 46899999999999984 46788888888777775 66666665554
No 142
>KOG2243|consensus
Probab=84.86 E-value=3 Score=34.78 Aligned_cols=57 Identities=30% Similarity=0.542 Sum_probs=43.1
Q ss_pred HHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy6108 51 LLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 51 ~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 128 (131)
.|+.+|+++.|.|+-.+|...+... .+.|..+++.++.-+..|.+.-.+|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~---------------------k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH---------------------KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc---------------------ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 3566788888888888888887643 23566677777877778888888999988754
No 143
>PLN02228 Phosphoinositide phospholipase C
Probab=83.74 E-value=9.1 Score=28.68 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHhcc
Q psy6108 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIG--RNPTEQELEDLLKEVDPD----DVGSVDFESFLKLMANH 75 (131)
Q Consensus 5 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 75 (131)
+++++..+ |..+-. ++.|+.++|..+|.... ...+.+.+..++..+... ..|.++...|..++...
T Consensus 22 ~~~ei~~i---f~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRL---FEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHH---HHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 44555554 555543 36899999999998753 235567788888887543 34679999999999764
No 144
>KOG3449|consensus
Probab=83.39 E-value=6.5 Score=22.54 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=43.7
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy6108 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKL 71 (131)
Q Consensus 13 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 71 (131)
...|-++...++-..+..+++.+|...|.....+.+..++..+ +|+ +.+|.+..
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 3456666777777899999999999999999999999999998 344 67777665
No 145
>KOG4578|consensus
Probab=82.80 E-value=1.1 Score=30.81 Aligned_cols=63 Identities=6% Similarity=0.157 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy6108 48 LEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKV 127 (131)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~ 127 (131)
+...|..+|.|.++.|...|+..+-..+......+. -...+++-.|.|+|.+|++.|+...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rk-------------------C~rk~~~yCDlNkDKkISl~Ew~~C 395 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRK-------------------CSRKFFKYCDLNKDKKISLDEWRGC 395 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHH-------------------HhhhcchhcccCCCceecHHHHhhh
Confidence 344577778888888877766555443322212222 2445666677888888888888776
Q ss_pred Hh
Q psy6108 128 MT 129 (131)
Q Consensus 128 ~~ 129 (131)
|.
T Consensus 396 L~ 397 (421)
T KOG4578|consen 396 LG 397 (421)
T ss_pred hc
Confidence 54
No 146
>PLN02230 phosphoinositide phospholipase C 4
Probab=82.31 E-value=12 Score=28.36 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 43 PTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
.++.++..+|..+..+ ++.++.++|..++....
T Consensus 26 ~p~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 26 GPVADVRDLFEKYADG-DAHMSPEQLQKLMAEEG 58 (598)
T ss_pred CCcHHHHHHHHHHhCC-CCccCHHHHHHHHHHhC
Confidence 4678899999999544 37899999999998764
No 147
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=81.91 E-value=4.2 Score=22.69 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCceeHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 24 SGKIVSKYVGTVMRAI--GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+|.++..|...+-.-+ .+.++..+...+...+........++.+|...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5888888876664432 234677777777777765555668888888887754
No 148
>PLN02230 phosphoinositide phospholipase C 4
Probab=81.83 E-value=11 Score=28.42 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=44.2
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC---CCCHHHHHHHHHhcC-------CCCCCcccHHHHHHHHhcc
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAIGR---NPTEQELEDLLKEVD-------PDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d-------~~~~g~i~~~ef~~~~~~~ 75 (131)
.++..+|..+-.++ ++++.++|..+|..-.. ..+...+..++..+- .-+.+.+++..|..++...
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 45666788775444 89999999999988542 235566666665431 1134569999999998753
No 149
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=81.81 E-value=1.9 Score=16.93 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=12.1
Q ss_pred CCCCCCceeHHHHHHH
Q psy6108 112 DENNTGHVRYEEFAKV 127 (131)
Q Consensus 112 d~~~dg~i~~~eF~~~ 127 (131)
|.|+||.|+--++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5789999998887643
No 150
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=80.42 E-value=5.2 Score=19.45 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKE 54 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (131)
..+++++...+...|.. +.+.+..+...+...+| ++...+..-|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 35788999999999987 46888988888877776 666666665543
No 151
>KOG1264|consensus
Probab=78.92 E-value=8 Score=30.38 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCCHHHHHHH-HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHH-HHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 3 TLDEEQITEW-KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELE-DLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 3 ~l~~~~~~~~-~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+.++.+|..| +..+...|...-..|+..+++.+|...++.++..... .-+.. |.-..+.++|.+|..+....
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~l 209 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKL 209 (1267)
T ss_pred CCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHH
Confidence 3577888888 5667777877777899999999998876665544332 22222 23356779999998887765
No 152
>KOG1265|consensus
Probab=78.87 E-value=25 Score=28.12 Aligned_cols=66 Identities=11% Similarity=0.259 Sum_probs=52.8
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc----------CCCCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHhccC
Q psy6108 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAI----------GRNPTEQELEDLLKEVDPD----DVGSVDFESFLKLMANHI 76 (131)
Q Consensus 11 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~~ 76 (131)
++..+|..+-.+++-++|.++|..+|+.- -.......+..++..+..+ .+|.++-+.|+.++..-.
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gdE 301 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGDE 301 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCCc
Confidence 45677888888888999999999998853 2345678888999998765 469999999999988643
No 153
>KOG1954|consensus
Probab=78.87 E-value=6.9 Score=27.89 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=44.3
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy6108 12 WKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKL 71 (131)
Q Consensus 12 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 71 (131)
.-++|..+.+- +|+||-..-+.-+.. ..++...+.++|+..|.+.+|.++=+||.-+
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 34567777554 589988766665543 4578899999999999999999999999654
No 154
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=78.51 E-value=8.9 Score=20.99 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=29.4
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDD 59 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 59 (131)
..||..||...-...+.+.+.+..+.+...+..+.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~ 47 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKN 47 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 45899999999999999999999999988874433
No 155
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=77.07 E-value=2.1 Score=25.28 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=52.0
Q ss_pred CCCceeHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCC
Q psy6108 23 GSGKIVSKYVGTVMRAI--GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLS 100 (131)
Q Consensus 23 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls 100 (131)
.+|.++..|...+..-+ ...++......+...++......+++.+++..+............+..++...-.||..-.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG~~~~ 115 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYADGEISP 115 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTTC-SC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCH
Confidence 45889999988765544 3445555666666666544444678888887776543322223446667777777775322
Q ss_pred -H-HHHHHHHHhhCCCC
Q psy6108 101 -D-QEVDELIGLADENN 115 (131)
Q Consensus 101 -~-~~~~~~~~~~d~~~ 115 (131)
+ .-+..+...++.+.
T Consensus 116 ~E~~~l~~ia~~L~i~~ 132 (140)
T PF05099_consen 116 EEQEFLRRIAEALGISE 132 (140)
T ss_dssp CHHHHHHHHHHHCTS-S
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 2 22455555555443
No 156
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=76.05 E-value=7.8 Score=19.65 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=27.2
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
+-.+|.+|+...+..++-.++..++..+|..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 35689999999999999889998888888775
No 157
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=75.59 E-value=12 Score=21.09 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcC----CCCCCHHHHHHHHHhhC
Q psy6108 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD----GEKLSDQEVDELIGLAD 112 (131)
Q Consensus 44 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~----~~~ls~~~~~~~~~~~d 112 (131)
.+..++.-|..+.. +|.+....|..++.-. ...+-+..+|..+..- +..++.+++..++..+.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMK----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCc----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 47788888888755 8899999999888632 4555556666544432 56788888888777664
No 158
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=75.53 E-value=4.3 Score=21.29 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=32.1
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCC
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIP 77 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 77 (131)
-.++...|-.++.. .++...+..+...|+.=+.++|+.++|+..++...+
T Consensus 7 p~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34555555555544 356666666666665556788999999998887643
No 159
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=75.45 E-value=8.6 Score=26.65 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHH
Q psy6108 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAE 84 (131)
Q Consensus 5 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 84 (131)
..++...+...|+. |.|....+.-++|......+.......-+.-+-+.|...=+|.+-|.|...-+.. ....
T Consensus 39 ~~~e~~A~l~Efr~-DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~------~nP~ 111 (357)
T PLN02508 39 DMAEFEALLQEFKT-DYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK------TNPV 111 (357)
T ss_pred hHHHHHHHHHHHHh-CccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc------CChH
Confidence 56677777777764 8888888888888776555433333344455556666666788888887665543 2256
Q ss_pred HHHHHHhhCcC
Q psy6108 85 LLEAFQVFDKD 95 (131)
Q Consensus 85 ~~~~f~~~d~~ 95 (131)
+.++|..+..|
T Consensus 112 lae~F~lMaRD 122 (357)
T PLN02508 112 VAEIFTLMSRD 122 (357)
T ss_pred HHHHHHHhCch
Confidence 77778777776
No 160
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=75.32 E-value=14 Score=21.78 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhhhhcCCC--CCceeHHHHHHHHHHcC-------CCCC-----------HHHHHHHHHhcCCCCCCcc
Q psy6108 4 LDEEQITEWKEAFALFDKNG--SGKIVSKYVGTVMRAIG-------RNPT-----------EQELEDLLKEVDPDDVGSV 63 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~--~g~i~~~e~~~~l~~~~-------~~~~-----------~~~~~~~~~~~d~~~~g~i 63 (131)
+..-.+..+.++|....... +..|+..++..++..+- .... +-.+..++..||++++|+|
T Consensus 35 l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I 114 (127)
T PF09068_consen 35 LDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKI 114 (127)
T ss_dssp GGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEE
T ss_pred heeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCee
Confidence 34445666777887776543 46799999988877531 1111 1123557888999999999
Q ss_pred cHHHHHHHHhc
Q psy6108 64 DFESFLKLMAN 74 (131)
Q Consensus 64 ~~~ef~~~~~~ 74 (131)
+.-.|...+..
T Consensus 115 ~vls~KvaL~~ 125 (127)
T PF09068_consen 115 RVLSFKVALIT 125 (127)
T ss_dssp EHHHHHHHHHH
T ss_pred ehhHHHHHHHH
Confidence 99998877653
No 161
>KOG4070|consensus
Probab=74.36 E-value=9.8 Score=23.28 Aligned_cols=85 Identities=19% Similarity=0.311 Sum_probs=52.9
Q ss_pred HHHHHhhhh----cCCCCC-ceeHHHHHHHHHHc----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC----C
Q psy6108 11 EWKEAFALF----DKNGSG-KIVSKYVGTVMRAI----GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI----P 77 (131)
Q Consensus 11 ~~~~~F~~~----D~~~~g-~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~----~ 77 (131)
.+.+.|+.| |+-.+| .|+...+..++... |...+.....-.|..+.-..-+.++|++|...+..+. .
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k 92 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFK 92 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhc
Confidence 344445444 333444 36777777777764 3445666666677777555667899999977766543 3
Q ss_pred CCCCHHHHHHHHHhhCcC
Q psy6108 78 NVDSTAELLEAFQVFDKD 95 (131)
Q Consensus 78 ~~~~~~~~~~~f~~~d~~ 95 (131)
.....+.+..+.+.+...
T Consensus 93 ~Ks~ee~l~~I~~llagk 110 (180)
T KOG4070|consen 93 GKSKEEALDAICQLLAGK 110 (180)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 345556777777666543
No 162
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=73.98 E-value=7.1 Score=27.00 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDST 82 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 82 (131)
+...++.+.+...|+. |.|....+.-++|......+.......-+.-+-+.|...=+|.+-|.|...-+... .
T Consensus 37 s~~~~e~~A~l~E~r~-DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~------n 109 (351)
T CHL00185 37 SSNIEEIEAILEEFRA-DYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK------N 109 (351)
T ss_pred chhHHHHHHHHHHHHh-CccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC------C
Confidence 3456677777777764 88888889989998766554333333444455555655557777777776655432 2
Q ss_pred HHHHHHHHhhCcC
Q psy6108 83 AELLEAFQVFDKD 95 (131)
Q Consensus 83 ~~~~~~f~~~d~~ 95 (131)
..+.++|..+..|
T Consensus 110 P~lae~F~lMaRD 122 (351)
T CHL00185 110 PLLAEGFLLMSRD 122 (351)
T ss_pred cHHHHHHHHHhhh
Confidence 5567777777766
No 163
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=73.09 E-value=11 Score=19.59 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=26.4
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy6108 27 IVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKL 71 (131)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 71 (131)
++..++..++...+..++.+++..+++.-+..+--.++-..+..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHH
Confidence 344566666766677777777777777765544334443333333
No 164
>KOG0035|consensus
Probab=72.37 E-value=17 Score=28.86 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCC-HHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHH
Q psy6108 46 QELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDS-TAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEF 124 (131)
Q Consensus 46 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF 124 (131)
.+++.++...+....|..++++|+.++...-..... ...+.. +-.++...|.+.-|++++.+|
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e----------------~~~lvn~~n~l~~~qv~~~e~ 810 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAE----------------WFRLVNKKNPLIQGQVQLLEF 810 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHH----------------HHHHHhccCcccccceeHHHH
Confidence 344556666666667778888888888765222111 111222 222344455555677777777
Q ss_pred HHHHh
Q psy6108 125 AKVMT 129 (131)
Q Consensus 125 ~~~~~ 129 (131)
...|.
T Consensus 811 ~ddl~ 815 (890)
T KOG0035|consen 811 EDDLE 815 (890)
T ss_pred HhHhh
Confidence 77664
No 165
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=71.74 E-value=8.4 Score=26.74 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
...++.+.+...|+. |.|....+.-++|......+.......-+.-+-+.|...=+|.+-|.|...-+... ..
T Consensus 42 ~~~~e~~A~l~E~r~-DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP 114 (355)
T PRK13654 42 PNREELDAILEEMRA-DYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR------NP 114 (355)
T ss_pred hhHHHHHHHHHHHHh-CcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc------Cc
Confidence 456677777777764 88888889888988866555433334444555556655557777777766655422 25
Q ss_pred HHHHHHHhhCcC
Q psy6108 84 ELLEAFQVFDKD 95 (131)
Q Consensus 84 ~~~~~f~~~d~~ 95 (131)
.+.++|..+..|
T Consensus 115 ~lae~F~lMaRD 126 (355)
T PRK13654 115 LLAELFQLMARD 126 (355)
T ss_pred HHHHHHHHHhhh
Confidence 677778777766
No 166
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=71.74 E-value=11 Score=25.85 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
...++.+.+...|+. |.|....+.-++|......+.......-+.-+-+.|...=+|.+-|.|...-+... ..
T Consensus 22 ~~~~e~~A~l~E~r~-DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP 94 (323)
T cd01047 22 KNREEFEAMLAEFKA-DYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT------NP 94 (323)
T ss_pred hhHHHHHHHHHHHHh-CcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC------Cc
Confidence 345666777777764 88888888888888765554333444444555566655557777777776655432 25
Q ss_pred HHHHHHHhhCcC
Q psy6108 84 ELLEAFQVFDKD 95 (131)
Q Consensus 84 ~~~~~f~~~d~~ 95 (131)
.+.++|..+..|
T Consensus 95 ~lae~F~lMaRD 106 (323)
T cd01047 95 VVAELFRLMARD 106 (323)
T ss_pred HHHHHHHHHhhh
Confidence 567777777766
No 167
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=71.35 E-value=1.2 Score=28.94 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=27.7
Q ss_pred HHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHH
Q psy6108 88 AFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFA 125 (131)
Q Consensus 88 ~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~ 125 (131)
.|..+|.+|..++.+.++.+...+ .++.+++++.+
T Consensus 148 ~f~l~D~~~~~i~~~~~~~~~~~~---~~~~i~~eD~l 182 (221)
T PF08812_consen 148 SFILYDEEGKPISNEELEEYIDEL---FDQEINYEDLL 182 (221)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHHh---hcCCCcHHHHH
Confidence 588899999999999999998883 34567777654
No 168
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=71.09 E-value=13 Score=19.22 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=26.7
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
--|+.+.++..+...|..+++..+..+....
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4588999999999999999999998888765
No 169
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=70.40 E-value=15 Score=21.26 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 82 TAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 82 ~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
...+..+|-.+ ...+|.+|=..++..++.-.+|.|++..-+.++.
T Consensus 52 ~Nvl~Hi~Gyf---k~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 52 INVLQHIFGYF---KKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLK 96 (117)
T ss_pred HHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 34455555444 5578998888888888888899999877776654
No 170
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.40 E-value=21 Score=21.61 Aligned_cols=81 Identities=15% Similarity=0.280 Sum_probs=53.9
Q ss_pred HHhhhhcCCCCCceeHHHHHHH---HHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy6108 14 EAFALFDKNGSGKIVSKYVGTV---MRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQ 90 (131)
Q Consensus 14 ~~F~~~D~~~~g~i~~~e~~~~---l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 90 (131)
-+|..+..| |.++..|...+ +.. .+.++...+..+......-+...+++-.|...+..........+-+...+.
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mwe 110 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWE 110 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 667777666 66887775543 333 566888888888888766677789999999998865433233334455555
Q ss_pred hhCcCCC
Q psy6108 91 VFDKDGE 97 (131)
Q Consensus 91 ~~d~~~~ 97 (131)
..-.||.
T Consensus 111 Ia~ADg~ 117 (148)
T COG4103 111 IAYADGE 117 (148)
T ss_pred HHHcccc
Confidence 5555543
No 171
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=70.37 E-value=9.1 Score=26.36 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
...++...+...|+. |.|....+.-++|......+.......-+.-+-+.|...=+|.+-|.|...-+.. ...
T Consensus 32 ~~~~e~~A~l~E~r~-DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~------~~P 104 (337)
T TIGR02029 32 PVENEWDAMLAEMKA-DYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN------RDP 104 (337)
T ss_pred hhHHHHHHHHHHHHh-CccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC------CCh
Confidence 356677777777764 8888888888888775544433333334444555565555677777776655542 335
Q ss_pred HHHHHHHhhCcC
Q psy6108 84 ELLEAFQVFDKD 95 (131)
Q Consensus 84 ~~~~~f~~~d~~ 95 (131)
.+.++|..+..|
T Consensus 105 ~lae~F~~MaRD 116 (337)
T TIGR02029 105 VVAELFQLMARD 116 (337)
T ss_pred HHHHHHHHHhhh
Confidence 577778777766
No 172
>PF13551 HTH_29: Winged helix-turn helix
Probab=69.87 E-value=17 Score=20.23 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHH-H-HcCCCCCHHHHHHHHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVM-R-AIGRNPTEQELEDLLK 53 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l-~-~~~~~~~~~~~~~~~~ 53 (131)
+++++...+.+.+.....++.+..+...+...+ . ..+..++...+.++++
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~ 109 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILK 109 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHH
Confidence 444444444444443332222234444444432 2 1344444444444443
No 173
>PHA02105 hypothetical protein
Probab=68.13 E-value=14 Score=18.54 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=33.1
Q ss_pred ceeHHHHHHHHHHc---CCCCCHHHHHHHHHhcCCCCC--CcccHHHHHHHHhcc
Q psy6108 26 KIVSKYVGTVMRAI---GRNPTEQELEDLLKEVDPDDV--GSVDFESFLKLMANH 75 (131)
Q Consensus 26 ~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~~~~~ 75 (131)
.++.++++.++..- ..++..+.+..+-..+...+- -.++|+||..++-.+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~i 58 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFI 58 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccc
Confidence 46788888887653 456666666666666655433 367889988777654
No 174
>PF08707 PriCT_2: Primase C terminal 2 (PriCT-2) ; InterPro: IPR014819 This alpha helical domain is found at the C-terminal of primases. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=67.56 E-value=17 Score=19.27 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=48.0
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy6108 49 EDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAK 126 (131)
Q Consensus 49 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~ 126 (131)
..++..++. +..-+|.+++.+...+.......+....+|..+........+.+++..+..+ ++.|.|++.-+..
T Consensus 3 ~~~L~~i~~--~~~~~y~~W~~vg~Al~~~~~g~~~g~~l~~~wS~~~~ky~~~e~~~~W~s~--~~~~~it~~Tl~~ 76 (78)
T PF08707_consen 3 REALDHIPP--DIADDYDDWIRVGMALKHEFGGGEEGLDLWDEWSRQSPKYDEEECERKWRSF--DRPGGITIGTLFY 76 (78)
T ss_pred HHHHhcCCc--ccccCHHHHHHHHHHHHHhccCChHHHHHHHHHhcCCCCCCHHHHHHHHHhC--CCCCCccHHHHHH
Confidence 444555533 2233788887776655322222467778888887777778888899999998 4455587766543
No 175
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=67.52 E-value=11 Score=22.98 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q psy6108 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 7 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 38 (131)
..+..+.......|..+.+|||..++++++-.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 45667777778888888889999999998654
No 176
>PRK04387 hypothetical protein; Provisional
Probab=67.13 E-value=20 Score=19.90 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFL 69 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 69 (131)
+.+|.+++-.+...|.....--...|..++|....+.+ ..-+...+-+++++.+. ..+|.-.|.-..
T Consensus 9 ~dWsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe-~~SGYS~Y~~Vk 76 (90)
T PRK04387 9 LDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFE-KVSGYSIYRAVQ 76 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHcCCcHHHHHH
Confidence 35678888888888887766555678888888888876 44456666677777763 235554444433
No 177
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=66.74 E-value=7.8 Score=19.51 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFE 66 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 66 (131)
|++.....++.+|.... ..+.++..++...|. .+++.+-.+++... ..|.|.++
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~--~~GlV~~~ 55 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLA--EKGLVEYE 55 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHH--HTTSEEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHH--HCCCEEec
Confidence 56677788888888876 568899999888764 56666667776663 34555543
No 178
>PRK00523 hypothetical protein; Provisional
Probab=66.65 E-value=17 Score=19.20 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=26.2
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
--|+.+-++..+...|..+++..+.+++...
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4588888898888899999999988888776
No 179
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=66.17 E-value=6.9 Score=21.87 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=35.2
Q ss_pred CCceeHHHHHHHHHHcC--C---CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCC
Q psy6108 24 SGKIVSKYVGTVMRAIG--R---NPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG 96 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~--~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~ 96 (131)
+|.++..|...+...+. + ......+..++...-..- -..+..++...+....+.......+..++.....||
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~aDG 92 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAADG 92 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccC
Confidence 58888888777665542 2 233444555554442110 024456666666654332122223344455555555
No 180
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=65.35 E-value=10 Score=19.33 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=19.7
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHH
Q psy6108 26 KIVSKYVGTVMRAIGRNPTEQELEDL 51 (131)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 51 (131)
.|+.++|..+|......++..++.++
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888999999888777888777654
No 181
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=65.23 E-value=16 Score=18.35 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCc----eeHHHHHHHHHHcC
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGK----IVSKYVGTVMRAIG 40 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~----i~~~e~~~~l~~~~ 40 (131)
+.+|+++.+.+...|... |+ ++..+...+...+|
T Consensus 6 T~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lg 43 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIG 43 (58)
T ss_pred CCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhC
Confidence 578999999999998754 55 77777777666665
No 182
>PLN02223 phosphoinositide phospholipase C
Probab=64.85 E-value=39 Score=25.31 Aligned_cols=65 Identities=6% Similarity=0.078 Sum_probs=43.3
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHH---HHc--CCCCCHHHHHHHHHhcCCC--------CCCcccHHHHHHHHhcc
Q psy6108 10 TEWKEAFALFDKNGSGKIVSKYVGTVM---RAI--GRNPTEQELEDLLKEVDPD--------DVGSVDFESFLKLMANH 75 (131)
Q Consensus 10 ~~~~~~F~~~D~~~~g~i~~~e~~~~l---~~~--~~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~~~~~ 75 (131)
..++.+|..+- .+.|.++...+..+| ..- ....+.+..+.++..+-.. +.+.++.+.|..++...
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 34455677663 667999999999988 432 2345666666666654221 23569999999998764
No 183
>KOG0843|consensus
Probab=64.74 E-value=31 Score=21.85 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLK 53 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 53 (131)
+.++++++.++...|. +++||.-.|=+.+...|+ +++..++-.|.
T Consensus 107 T~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~--LsetQVkvWFQ 151 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLS--LSETQVKVWFQ 151 (197)
T ss_pred cccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcC--CChhHhhhhhh
Confidence 5689999999999995 568998888888777766 55555544443
No 184
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=64.70 E-value=34 Score=21.87 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=9.9
Q ss_pred HHHHHhcCCCCCCcccHHHHHHH
Q psy6108 49 EDLLKEVDPDDVGSVDFESFLKL 71 (131)
Q Consensus 49 ~~~~~~~d~~~~g~i~~~ef~~~ 71 (131)
+.+.+.++ ++|.|.+.+.++.
T Consensus 142 eNIVk~LN--K~~~i~lp~~LA~ 162 (194)
T PF07199_consen 142 ENIVKKLN--KKGTIELPEDLAQ 162 (194)
T ss_pred HHHHHHHc--CCCCccchHHHHH
Confidence 44555542 3345555555444
No 185
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=63.27 E-value=20 Score=19.77 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESF 68 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 68 (131)
.+|.+++-.+...|.....--.+.|+.++|....+.+ ..-++..+-.++.+.+.. .+|.-.|.-.
T Consensus 10 dWsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~-~SGYs~Y~~v 75 (88)
T PF05256_consen 10 DWSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEE-QSGYSIYRVV 75 (88)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHC-CSS--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HhCCcHHHHH
Confidence 4677888888888877765555779999998888876 344666666777777743 3555444433
No 186
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=63.22 E-value=22 Score=22.50 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=24.1
Q ss_pred cCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy6108 20 DKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD 56 (131)
Q Consensus 20 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (131)
..+.+|+++.+++...+..-+..++.+++..+....+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3577899999999998887677788999999888764
No 187
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=61.73 E-value=25 Score=19.27 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHH
Q psy6108 43 PTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYE 122 (131)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~ 122 (131)
++..+...+++..= +....|.+.+|...+....+. -+..+..++=.-+|...+|+||.=
T Consensus 4 ITK~eA~~FW~~~F-g~r~IVPW~~F~~~L~~~h~~--------------------~~~~~~~aLk~TiDlT~n~~iS~F 62 (85)
T PF02761_consen 4 ITKAEAAEFWKTSF-GKRTIVPWSEFRQALQKVHPI--------------------SSGLEAMALKSTIDLTCNDYISNF 62 (85)
T ss_dssp -SSHHHHHHHHHHH-TT-SEEEHHHHHHHHHHHS----------------------SSHHHHHHHHHHH-TTSSSEEEHH
T ss_pred eccHHHHHHHHHHC-CCCeEeeHHHHHHHHHHhcCC--------------------CchHHHHHHHHHHhcccCCccchh
Confidence 45566667766652 345679999999998876322 233455666777899999999987
Q ss_pred HHHHH
Q psy6108 123 EFAKV 127 (131)
Q Consensus 123 eF~~~ 127 (131)
||--+
T Consensus 63 eFdvF 67 (85)
T PF02761_consen 63 EFDVF 67 (85)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 77554
No 188
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=61.17 E-value=12 Score=27.56 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTA 83 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 83 (131)
+..........+|.+.-+.+...++..++..++.+++......+--+.|..-+.... .+.|.+++..+..-. ..+.
T Consensus 479 l~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel---~D~d 554 (612)
T COG5069 479 LVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSEL---VDYD 554 (612)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhh---cChh
Confidence 344555666778888888777889999999999998876665443444544432222 367777776665433 3334
Q ss_pred HHHHHHHhhCc----CCCCCCHHHHHHHHH---hh--CCCC-CCceeHHHHHHHHh
Q psy6108 84 ELLEAFQVFDK----DGEKLSDQEVDELIG---LA--DENN-TGHVRYEEFAKVMT 129 (131)
Q Consensus 84 ~~~~~f~~~d~----~~~~ls~~~~~~~~~---~~--d~~~-dg~i~~~eF~~~~~ 129 (131)
.++.+|..++. ....+|.+.+..... .. |.|+ .-.+++--|+.-+.
T Consensus 555 ~v~~~~~~f~diad~rsl~is~~ilRs~~aii~~lpe~in~~r~~Ldvltfi~slm 610 (612)
T COG5069 555 LVTRGFTEFDDIADARSLAISSKILRSLGAIIKFLPEDINGVRPRLDVLTFIESLM 610 (612)
T ss_pred hhhhhHHHHHHhhhhhhhhccHHHHHHhhhHheechhhhcccCccchHHHHHHHHh
Confidence 44444444432 123555555554432 11 3332 22466777776554
No 189
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=60.84 E-value=14 Score=22.48 Aligned_cols=59 Identities=17% Similarity=0.412 Sum_probs=37.1
Q ss_pred CCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy6108 58 DDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAK 126 (131)
Q Consensus 58 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~ 126 (131)
++.|.|++.+|-.--... .....++ +.+|++|..+|.++++.+++.-. .|.|.+.+..+
T Consensus 27 ~~~~~itiknWFk~~~~~----~~n~KIE---qIidKnG~~ITs~qld~l~~~~~---~g~i~~~~l~~ 85 (145)
T PF08339_consen 27 DNSNSITIKNWFKEDNSG----NYNHKIE---QIIDKNGRRITSDQLDKLLEDKG---KGKITSYQLSN 85 (145)
T ss_pred CCCCcEEehhhhhccccc----cchhhHH---HHhcCCCCEEcHhHHHHHhcccc---cCcchHHHHHH
Confidence 455678877765433221 1224444 45688999999999999887433 45566666554
No 190
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=60.67 E-value=28 Score=19.49 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=23.5
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCC---CCceeHHHHHH
Q psy6108 65 FESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENN---TGHVRYEEFAK 126 (131)
Q Consensus 65 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~---dg~i~~~eF~~ 126 (131)
|..|+..+... ...+.+...+..+ +|+.|...+-..+..-+ .|.+|+.|..+
T Consensus 9 w~~~~~ll~~~----~~~~~l~~~l~~l------LTp~E~~~l~~R~~i~~~Ll~~~~tQrEIa~ 63 (94)
T TIGR01321 9 WEAFLKLLKKA----DSEDDMQLLLELI------LTRSEREDLGDRIRIVNELLNGNMSQREIAS 63 (94)
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44444444443 3334444444333 55555555444444333 34455554443
No 191
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=60.19 E-value=10 Score=19.47 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.0
Q ss_pred hhhcCCCCCceeHHHHHHHHHH
Q psy6108 17 ALFDKNGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 17 ~~~D~~~~g~i~~~e~~~~l~~ 38 (131)
+.+|...+.+|+.+++..++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3578888899999999988764
No 192
>KOG0506|consensus
Probab=60.02 E-value=30 Score=25.53 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=44.4
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc---C-----CCCCCcccHHHHHHHHh
Q psy6108 14 EAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV---D-----PDDVGSVDFESFLKLMA 73 (131)
Q Consensus 14 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d-----~~~~g~i~~~ef~~~~~ 73 (131)
-+|..+....++.++.--|.++|+++|+.-+++.+..++..+ + ..+.+.++-+-|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 356666555679999999999999999998887777765554 3 23446778888877654
No 193
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=59.37 E-value=50 Score=21.97 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHH----HHhcCCCCCCcccHHHHHHHHh
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDL----LKEVDPDDVGSVDFESFLKLMA 73 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~ 73 (131)
+++++..++...+.. ..|...=..+.....|...++.++... -..+. ..| ++++.|...+.
T Consensus 19 ~~~~~~~~~~~~~~~------~lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~--~~G-~~~~~~r~~ir 83 (256)
T TIGR02933 19 LSPDQLQQFDQAWQR------QRHIEQAVVRAADEIGVVIPPSLLEEAPQALAQALD--EQA-LDAAERRAMLA 83 (256)
T ss_pred CCHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH--HcC-CCHHHHHHHHH
Confidence 455555555444432 223333333334557888888888443 33332 233 68888876654
No 194
>KOG1785|consensus
Probab=59.35 E-value=65 Score=23.30 Aligned_cols=85 Identities=14% Similarity=0.029 Sum_probs=55.8
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcC--CC--CC
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD--GE--KL 99 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~--~~--~l 99 (131)
...|....|+++|.+.....+--+...+-..+|...++.|+--||=.+-+.+ .....+..-|+.+..- |+ -+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF----qPw~tllkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF----QPWKTLLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh----ccHHHHHHhhhhhhccCCceeEEe
Confidence 4578899999999887655555566667777888899999877775554443 2223344444444333 43 58
Q ss_pred CHHHHHHHHHhhC
Q psy6108 100 SDQEVDELIGLAD 112 (131)
Q Consensus 100 s~~~~~~~~~~~d 112 (131)
|.+|+.+=+.++-
T Consensus 264 TYDEVk~RLqk~~ 276 (563)
T KOG1785|consen 264 TYDEVKARLQKYI 276 (563)
T ss_pred eHHHHHHHHHHHh
Confidence 8888877666653
No 195
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=59.17 E-value=8.8 Score=20.83 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKY 31 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e 31 (131)
.+.+++.++++..-|..+|.+..|.++..+
T Consensus 56 ~~~~~~~v~~II~~~~LF~~~~~~iltS~~ 85 (87)
T PF14297_consen 56 LGVSEEYVEEIINEYGLFDIEEYGILTSEG 85 (87)
T ss_pred HCcCHHHHHHHHHHhCCcccCCCcEEechh
Confidence 356667777776666677666655565544
No 196
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=58.02 E-value=44 Score=21.12 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=29.2
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy6108 21 KNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD 56 (131)
Q Consensus 21 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (131)
.|.+|++..+++...++.-+...+.+.+..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 467899999999998876566688998888877754
No 197
>PLN02223 phosphoinositide phospholipase C
Probab=57.48 E-value=70 Score=24.10 Aligned_cols=30 Identities=3% Similarity=-0.056 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy6108 42 NPTEQELEDLLKEVDPDDVGSVDFESFLKLM 72 (131)
Q Consensus 42 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (131)
..+++++..+|..+. .+.|.++.+....++
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl 41 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFI 41 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHH
Confidence 346788899999994 556777777776666
No 198
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=56.98 E-value=3.3 Score=17.77 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=14.3
Q ss_pred HHHHHhhCCCCCCceeHHH
Q psy6108 105 DELIGLADENNTGHVRYEE 123 (131)
Q Consensus 105 ~~~~~~~d~~~dg~i~~~e 123 (131)
+.++..=|.|+|-+|+.++
T Consensus 2 ~~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIED 20 (30)
T ss_pred hhHhhccccCCCcEEEEec
Confidence 4567778888888888654
No 199
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=56.70 E-value=9.2 Score=16.66 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=11.5
Q ss_pred CCceeHHHHHHHHhc
Q psy6108 116 TGHVRYEEFAKVMTL 130 (131)
Q Consensus 116 dg~i~~~eF~~~~~~ 130 (131)
.|.|++++++.+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 578888888887654
No 200
>PRK01844 hypothetical protein; Provisional
Probab=56.25 E-value=29 Score=18.33 Aligned_cols=31 Identities=13% Similarity=0.453 Sum_probs=25.9
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
--|+.+-++..+...|..+++..+.++....
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3588888888888889999998888887766
No 201
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=55.59 E-value=42 Score=23.47 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=45.2
Q ss_pred HHHHHHH--HcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHH
Q psy6108 31 YVGTVMR--AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELI 108 (131)
Q Consensus 31 e~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~ 108 (131)
.|...+. ++|+......+....+ .|.|+.+|-+..+... ....+.+.++..++.++ +|++++..++
T Consensus 275 ~~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~-d~~~~~~~~~~~~~~lg-----~t~~ef~~~~ 342 (343)
T TIGR03573 275 IFHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEY-DGEFPKEDLEYFLKYLG-----ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHh-cccccHHHHHHHHHHhC-----CCHHHHHHHh
Confidence 3444443 3676665555444443 5789999999998875 33355678889999998 8888877765
No 202
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=54.80 E-value=29 Score=25.59 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI 39 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 39 (131)
++||+-|...+.-+|+..|..+==.|+.++|+.+|.-+
T Consensus 120 L~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 120 LELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred hccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 67899999999999999999887788999999998754
No 203
>KOG4004|consensus
Probab=54.55 E-value=11 Score=24.30 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy6108 102 QEVDELIGLADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 102 ~~~~~~~~~~d~~~dg~i~~~eF~~~~ 128 (131)
.-+..+|+-.|.|+||.|+++|+...+
T Consensus 222 ~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 222 HCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred hhchhhhhcccCCCCCceeHHHhhccc
Confidence 446779999999999999999997655
No 204
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=54.41 E-value=46 Score=20.06 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=24.7
Q ss_pred CCceeHHHHHHHHHH-cCCCCCHHHHHHHHHhcCCC
Q psy6108 24 SGKIVSKYVGTVMRA-IGRNPTEQELEDLLKEVDPD 58 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~ 58 (131)
.+.|+.+.|+.+|.. +...++.+.+..+|..+...
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 458999999999988 57779999999999998543
No 205
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.21 E-value=32 Score=18.10 Aligned_cols=31 Identities=16% Similarity=0.532 Sum_probs=24.5
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
--|+.+-++..+...|..+++..+..+++..
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4578888888888888888888888877664
No 206
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=53.06 E-value=70 Score=21.72 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=38.3
Q ss_pred CCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCc--------CCCCCCHHHHHHHHHhhC--CCCCCceeHHHHHHH
Q psy6108 59 DVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDK--------DGEKLSDQEVDELIGLAD--ENNTGHVRYEEFAKV 127 (131)
Q Consensus 59 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~--------~~~~ls~~~~~~~~~~~d--~~~dg~i~~~eF~~~ 127 (131)
..|+|+..+....+..- ...+...-..+-+ .|.-+|..-++.+...++ ....|.|+..|+.+-
T Consensus 67 ~gGRv~~~dL~~~LnVd------~~~ie~~~~~i~~~~~~~~l~~gelit~~Yld~l~~Eine~Lqe~G~vsi~eLa~~ 139 (272)
T PF09743_consen 67 HGGRVNLVDLAQALNVD------LDHIERRAQEIVKSDKSLQLVQGELITDSYLDSLAEEINEKLQESGQVSISELAKQ 139 (272)
T ss_pred cCCceEHHHHHHhcCcC------HHHHHHHHHHHHhCCCcEEEECCEEccHHHHHHHHHHHHHHHHHcCeEeHHHHHHh
Confidence 35778877777665431 1222222221111 177888888888888775 455688888888754
No 207
>KOG0113|consensus
Probab=52.74 E-value=54 Score=22.64 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=45.5
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcC
Q psy6108 28 VSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD 95 (131)
Q Consensus 28 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~ 95 (131)
+.++-.......+.......+...+..+|.+.+-.+.=+-|+.++...+........++..|..|-.=
T Consensus 61 t~~e~~er~~~~k~e~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~I 128 (335)
T KOG0113|consen 61 TPEEPLERGRREKTEKIPHKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPI 128 (335)
T ss_pred chhhHHHhhhhhhhhhhHHHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcc
Confidence 34443333333333444455677788888888777777888888877666667778888888887654
No 208
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=52.09 E-value=27 Score=16.65 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLK 53 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 53 (131)
..++++++..+...|... .+.+..+...+...+| ++...+...|.
T Consensus 5 ~~~~~~~~~~L~~~f~~~-----~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (56)
T smart00389 5 TSFTPEQLEELEKEFQKN-----PYPSREEREELAAKLG--LSERQVKVWFQ 49 (56)
T ss_pred CcCCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHC--cCHHHHHHhHH
Confidence 357888999998888642 2788888888777766 55666655554
No 209
>TIGR02834 spo_ytxC putative sporulation protein YtxC. This uncharacterized protein is part of a panel of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and nowhere else.
Probab=51.69 E-value=6 Score=26.72 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=38.6
Q ss_pred HHHHHHHHhccCCCCCCHHH-----H-HHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCCceeHHHHH
Q psy6108 65 FESFLKLMANHIPNVDSTAE-----L-LEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFA 125 (131)
Q Consensus 65 ~~ef~~~~~~~~~~~~~~~~-----~-~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~ 125 (131)
|++|+..++.......++-. . ...|..+|.+|..++.+.+..+...+ .++.|++++.+
T Consensus 175 YqeFI~lLryFV~~Qe~ki~~Vhvv~~~~~f~l~D~~~~~i~~e~l~~~~~~~---~~~~i~~ed~l 238 (276)
T TIGR02834 175 YQEFIKLLRYFVEIQDSRLEIVHIVVDGGSFRLYDENGRDLSSEELVELIDEV---FESGLYIEDIL 238 (276)
T ss_pred HHHHHHHHHHHHhccCcCccEEEEEEECCeEEEEcCCCCccCHHHHHHHHHHH---hcCCCCHHHHH
Confidence 67777777765422111110 1 34688899999999999999998873 35667777754
No 210
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.63 E-value=40 Score=18.46 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDF 65 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~ 65 (131)
+.++.+++..+...|+....--.+.|+.++|....+.+ ..-+...+-.+++..+.. .+|.-.|
T Consensus 9 ldWsTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~FE~-~SgyS~Y 72 (90)
T COG4476 9 LDWSTEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDFEK-SSGYSLY 72 (90)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHHHH-hcCccHH
Confidence 35677888888888887766556778889988888776 344556666677777633 3444333
No 211
>KOG4301|consensus
Probab=51.05 E-value=87 Score=22.21 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=39.3
Q ss_pred hhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 17 ALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 17 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
..+|+.+.|.++..-.+.+|..+..+...+.++-||.... +..|.+.+-.|..++...
T Consensus 117 aA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 117 AAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred hhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 4567778888888877777777655555666777777773 456666666666665544
No 212
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=51.02 E-value=24 Score=15.78 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHhhCCCCCCce-eHHHHHHHHhc
Q psy6108 98 KLSDQEVDELIGLADENNTGHV-RYEEFAKVMTL 130 (131)
Q Consensus 98 ~ls~~~~~~~~~~~d~~~dg~i-~~~eF~~~~~~ 130 (131)
.-|.+++..++........... +.++.++.++.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 3577888999998887666665 88888887764
No 213
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=50.38 E-value=49 Score=19.19 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=39.4
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy6108 15 AFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLK 70 (131)
Q Consensus 15 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 70 (131)
.|-..-.-++..+|.+++..+|...|.......+..+++.+. | .+..+.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 344444556667999999999999999999999999998883 2 56667665
No 214
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=49.93 E-value=18 Score=19.38 Aligned_cols=31 Identities=3% Similarity=0.234 Sum_probs=19.4
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD 56 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (131)
.|+||..++..+|.... ++...+..++..+.
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 58899999998887433 66677777777764
No 215
>KOG0039|consensus
Probab=49.63 E-value=89 Score=24.14 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=55.5
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHH
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQE 103 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~ 103 (131)
+| ++.+|+. ......++.++.++..+|. ++|+++-+++...+...... ... ......+.+-
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~ 62 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISA-------NWL-----SLIKKQTEEY 62 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHh-------hhh-----hhhhhhhhHH
Confidence 45 7777777 3444566777888888876 78888888888777644211 000 0022345555
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHh
Q psy6108 104 VDELIGLADENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 104 ~~~~~~~~d~~~dg~i~~~eF~~~~~ 129 (131)
...++...|.+..|.+.+.++.-++.
T Consensus 63 ~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 63 AALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHhhhhccccccceeeecchhHHHH
Confidence 67777788877777777766665543
No 216
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=49.63 E-value=40 Score=22.41 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
.|++.+++.+.+.|...-.+..|.|-..|..-++..-...++..+++.-.... +...|-|.+|+..+...
T Consensus 13 ~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 82 (257)
T PRK14074 13 GLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDI---KESLIAYSDFLEDLTKI 82 (257)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHH---HHHHHHHHHHHHHHHHH
Confidence 57899999999999988888889998888877666544556666555443333 23468888888776655
No 217
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=47.82 E-value=48 Score=19.88 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCCceeHHHHHHHHHHcC---------CCCCHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q psy6108 23 GSGKIVSKYVGTVMRAIG---------RNPTEQELEDLLKEVDPDDVG-SVDFESFLKL 71 (131)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 71 (131)
++..||.+||..++..-. ..++...++++...+...+.+ .++..|.+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 445688888888776521 235678888887777665544 3777776654
No 218
>PRK01381 Trp operon repressor; Provisional
Probab=47.76 E-value=51 Score=18.65 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCC---CCceeHHHHHH
Q psy6108 65 FESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENN---TGHVRYEEFAK 126 (131)
Q Consensus 65 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~---dg~i~~~eF~~ 126 (131)
|..|+..+..- ...+.+...|..+ +|++|.+.+-..+..-. .|.+++.|..+
T Consensus 9 W~~~v~ll~~a----~~~~~~~~~l~~l------lTp~Er~al~~R~~I~~~L~~g~~sQREIa~ 63 (99)
T PRK01381 9 WQRFVDLLKQA----FEEDLHLPLLTLL------LTPDEREALGTRVRIVEELLRGELSQREIKQ 63 (99)
T ss_pred HHHHHHHHHHh----ccHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 44444444432 3334455555444 56666665555544333 45555555443
No 219
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=47.62 E-value=30 Score=17.75 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC
Q psy6108 23 GSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDD 59 (131)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 59 (131)
.++-++..++...|..-|..++...+...+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3456888888888887788888888888888886543
No 220
>PHA02827 hypothetical protein; Provisional
Probab=44.72 E-value=38 Score=20.70 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCC-CCceeHHHHHHHH
Q psy6108 81 STAELLEAFQVFDKDGEKLSDQEVDELIGLADENN-TGHVRYEEFAKVM 128 (131)
Q Consensus 81 ~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~-dg~i~~~eF~~~~ 128 (131)
+.-.+-..+..|+.|....--+++..+++.+..+. +|.-+...|++.+
T Consensus 38 ~aG~vF~~l~sF~~DA~~~FG~~i~~l~~~l~ldS~~g~~n~~~~I~~~ 86 (150)
T PHA02827 38 PAGNVFAVFESFKRDASIVFGDDLTWFVKCMFLDSKEGFDHSKSMIRAM 86 (150)
T ss_pred cccHHHHHHHHHHhHHHHHHhHhHHHHHHHccccchhhHhhHHHHHHHH
Confidence 34455566666665544443445666666666554 4555556666554
No 221
>KOG0488|consensus
Probab=44.25 E-value=83 Score=21.83 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKE 54 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (131)
+.||..++.+|++.|..- .||+..|=..+-..|| +++..++..|.-
T Consensus 177 TaFT~~Ql~~LEkrF~~Q-----KYLS~~DR~~LA~~Lg--LTdaQVKtWfQN 222 (309)
T KOG0488|consen 177 TAFSDHQLFELEKRFEKQ-----KYLSVADRIELAASLG--LTDAQVKTWFQN 222 (309)
T ss_pred hhhhHHHHHHHHHHHHHh-----hcccHHHHHHHHHHcC--CchhhHHHHHhh
Confidence 468999999999999753 6898888877767666 777776655543
No 222
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=44.22 E-value=62 Score=18.59 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=31.1
Q ss_pred hhhcCCCCCceeHHHHHHHHHH----------cCCCCCHHHHHHHHHhcCCCCCCccc
Q psy6108 17 ALFDKNGSGKIVSKYVGTVMRA----------IGRNPTEQELEDLLKEVDPDDVGSVD 64 (131)
Q Consensus 17 ~~~D~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~d~~~~g~i~ 64 (131)
+.+|+..+-+||.++++.++.. .|-.++...+-.++-....++...++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp 67 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLS 67 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 4578889999999999998774 13445556665555554444444333
No 223
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=44.18 E-value=44 Score=16.90 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=12.0
Q ss_pred CCCHHHH-HHHHHHhhhhcCCCC
Q psy6108 3 TLDEEQI-TEWKEAFALFDKNGS 24 (131)
Q Consensus 3 ~l~~~~~-~~~~~~F~~~D~~~~ 24 (131)
+|+..+- .-+..++..++.+..
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~~~~ 24 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAAEAK 24 (63)
T ss_pred CCCHHHHHHHHHHHHHHhccCcc
Confidence 4554443 334677777775443
No 224
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=44.01 E-value=73 Score=19.32 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHh----------hCCCCCCceeHHHHHHHH
Q psy6108 96 GEKLSDQEVDELIGL----------ADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 96 ~~~ls~~~~~~~~~~----------~d~~~dg~i~~~eF~~~~ 128 (131)
|..++++|+..++.. +=.+..|..+-..+.+++
T Consensus 103 Gi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 103 GITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred CCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 999999999998821 123578888877776653
No 225
>PHA02773 hypothetical protein; Provisional
Probab=42.19 E-value=35 Score=18.88 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCce
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKI 27 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i 27 (131)
++|.+.+.+-+...|.....|.+|-+
T Consensus 19 i~lr~kqkell~rffeiae~de~gdl 44 (112)
T PHA02773 19 IKLRPKQKELLIRFFEIAEKDEDGDL 44 (112)
T ss_pred eeechhhHHHHHHHHHHheecCCCCE
Confidence 45677777777777877766666643
No 226
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.97 E-value=77 Score=19.01 Aligned_cols=49 Identities=4% Similarity=0.022 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
.+|+....-+..+.. ...+.+|.+++...+..-+.......+.+.+..+
T Consensus 14 r~T~qR~~Il~~l~~----~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 14 KVTLPRLKILEVLQE----PDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred CCCHHHHHHHHHHHh----CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 345444444433332 2346899999999998877777887777766655
No 227
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=41.56 E-value=50 Score=16.70 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 38 (131)
++-+.+..+.+.| .-++ +...++.++++.+|..
T Consensus 12 l~l~RIh~mLkmf-~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMF-PKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH--GGG---TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-cCCC-CCCCCCHHHHHHHHHH
Confidence 3455566666666 2233 3345677777777655
No 228
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=41.52 E-value=35 Score=20.77 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCC
Q psy6108 3 TLDEEQITEWKEAFALFDKNG 23 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~ 23 (131)
+|++++++++......+|+++
T Consensus 23 ~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 23 KLSPEELEELENELEEMDPDN 43 (147)
T ss_pred hCCHHHHHHHHHHHHhhCCCc
Confidence 589999999998888888775
No 229
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=40.28 E-value=1.2e+02 Score=24.28 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=40.5
Q ss_pred CCcccHHHHHHHHhccCCCCCCHHHHHHHHHhh---CcC-----CCCCCHHHHHHHHHhhC--CCCCCceeHHHHHHH
Q psy6108 60 VGSVDFESFLKLMANHIPNVDSTAELLEAFQVF---DKD-----GEKLSDQEVDELIGLAD--ENNTGHVRYEEFAKV 127 (131)
Q Consensus 60 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~---d~~-----~~~ls~~~~~~~~~~~d--~~~dg~i~~~eF~~~ 127 (131)
.|+|+.-+.-..+..- ...+...-+.+ |+. |.-++..-++.+...+. ....|.|+..|+.+-
T Consensus 72 gGRvnlvdLa~~LnVD------~~hiEr~~~~iv~~d~~~~l~~GeLit~~Yld~iaeEIne~LqE~G~isI~eLa~~ 143 (803)
T PLN03083 72 LGRVSLVDLADTIGVD------LYHVERQAQQVVSDDPGLMLVQGEIISQSYWDSIAEEINERLQECSQIALAELARQ 143 (803)
T ss_pred CCCeeHHHHhhhcCCC------HHHHHHHHHHHhcCCCceEEecCEecchHHHHHHHHHHHHHHHHcCcChHHHHHHh
Confidence 4889988887777642 12222222222 222 88888888888888875 556788888887764
No 230
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=38.17 E-value=81 Score=18.17 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=42.2
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 15 AFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 15 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
.|...-..++..+|.+++..+|...|.......+..+++.+. | .+..+.+..-..
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~----G-Kdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE----G-KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHHhHh
Confidence 344444556668999999999999999999999999988883 2 667777776544
No 231
>KOG0493|consensus
Probab=37.42 E-value=1e+02 Score=20.92 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLK 53 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 53 (131)
+.|+.+++++++..|+. +.||+..--+.+-.+|+ +++..|+-.|.
T Consensus 251 TAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELg--LNEsQIKIWFQ 295 (342)
T KOG0493|consen 251 TAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELG--LNESQIKIWFQ 295 (342)
T ss_pred ccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhC--cCHHHhhHHhh
Confidence 46889999999999964 46898877777667766 55555554443
No 232
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=37.17 E-value=43 Score=14.67 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=11.3
Q ss_pred ceeHHHHHHHHHHcCCCC
Q psy6108 26 KIVSKYVGTVMRAIGRNP 43 (131)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~ 43 (131)
.++..|++..+...|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 356677777777766544
No 233
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=37.08 E-value=1.3e+02 Score=20.30 Aligned_cols=51 Identities=8% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCCceeHHHHHHHHHHc--CCCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 22 NGSGKIVSKYVGTVMRAI--GRNPTEQE---LEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~--~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
-.+|.|+..|.. +...+ ...++.+. +..+|... .....++.+|+..+....
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVC 122 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHh
Confidence 346999999987 33332 23455555 44555544 344588999988887654
No 234
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=37.07 E-value=1.1e+02 Score=19.26 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP 43 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~ 43 (131)
.++++-..++.++|..+-.+ .+-+..+++-.++..+..+.
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~ 46 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPK 46 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCCh
Confidence 35677778888888887443 57799999999999886553
No 235
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=36.47 E-value=85 Score=18.08 Aligned_cols=10 Identities=20% Similarity=0.488 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q psy6108 45 EQELEDLLKE 54 (131)
Q Consensus 45 ~~~~~~~~~~ 54 (131)
.++++.++..
T Consensus 81 ~dElrai~~~ 90 (112)
T PRK14981 81 RDELRAIFAK 90 (112)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 236
>COG5562 Phage envelope protein [General function prediction only]
Probab=35.36 E-value=31 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=17.6
Q ss_pred HHHhhCCCCCCceeHHHHHHHHhc
Q psy6108 107 LIGLADENNTGHVRYEEFAKVMTL 130 (131)
Q Consensus 107 ~~~~~d~~~dg~i~~~eF~~~~~~ 130 (131)
+-.....+..|+.+|+||+..+-.
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHh
Confidence 444455677899999999987753
No 237
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.10 E-value=37 Score=21.62 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHH
Q psy6108 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELED 50 (131)
Q Consensus 8 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 50 (131)
.-+.++++|..||+.+--..+.+++..+|...|+--....+..
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 3457889999999998888899999999888776655555543
No 238
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=34.05 E-value=48 Score=14.37 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=12.0
Q ss_pred ceeHHHHHHHHHHcCCCC
Q psy6108 26 KIVSKYVGTVMRAIGRNP 43 (131)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~ 43 (131)
.++..+++..+...|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456777777777766553
No 239
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=33.48 E-value=50 Score=17.70 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHhhCCCC-CCceeHHHHHHHH
Q psy6108 96 GEKLSDQEVDELIGLADENN-TGHVRYEEFAKVM 128 (131)
Q Consensus 96 ~~~ls~~~~~~~~~~~d~~~-dg~i~~~eF~~~~ 128 (131)
|...+.+.+...+...+.+. =|.++.+||++.+
T Consensus 53 G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 53 GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 66677777777777775432 3567777777654
No 240
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=33.48 E-value=1.4e+02 Score=19.47 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCCCcc-cHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy6108 45 EQELEDLLKEVDPDDVGSV-DFESFLKLMANHIPNVDSTAELLEAFQVFD 93 (131)
Q Consensus 45 ~~~~~~~~~~~d~~~~g~i-~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d 93 (131)
..++..+++..-.+.+..| ++.-.+.+|..++........+...|..|+
T Consensus 83 ~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~~s~f~~l~~~~~~f~ 132 (205)
T PF12238_consen 83 REKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDSESPFMKLYKAFNTFE 132 (205)
T ss_pred HHHHHHHHHHhccCcccccccHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4556667777656667777 888888888888766565566666666665
No 241
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=32.92 E-value=90 Score=17.13 Aligned_cols=32 Identities=19% Similarity=0.011 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCC-ceeHHHHHH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSG-KIVSKYVGT 34 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g-~i~~~e~~~ 34 (131)
+.+++.+.+..........+... .+|..++..
T Consensus 6 ~A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~ 38 (87)
T PF13331_consen 6 HASPEAIREALENARTEDEEPKESEITWEDLIE 38 (87)
T ss_pred CCCHHHHHHHHHHhCccccCCccCcCCHHHHHH
Confidence 34555555554444443433332 377766654
No 242
>COG3013 Uncharacterized conserved protein [Function unknown]
Probab=32.88 E-value=1.2e+02 Score=18.56 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=6.3
Q ss_pred CCCCCHHHHHHHH
Q psy6108 96 GEKLSDQEVDELI 108 (131)
Q Consensus 96 ~~~ls~~~~~~~~ 108 (131)
+..++..++..|+
T Consensus 154 qYhLs~~EI~~Il 166 (168)
T COG3013 154 QYHLSANEINQIL 166 (168)
T ss_pred hccccHHHHHHHh
Confidence 3445555554443
No 243
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.74 E-value=1.4e+02 Score=19.23 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhh
Q psy6108 34 TVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVF 92 (131)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 92 (131)
.++....-..+.+....+...+..++.|.|+....+.+.+.- ...+.+..+.+.+
T Consensus 107 e~l~~w~~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~----i~D~~w~~am~aI 161 (195)
T PF11363_consen 107 ECLNEWAKGADPELRALVNRAFQVDKEGNLNTSRILGLRRLE----IDDERWQEAMDAI 161 (195)
T ss_pred HHHHHHhcCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhcc----CCCHHHHHHHHHH
Confidence 334443333445555556677788899999999988887754 2235555555544
No 244
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=32.31 E-value=1.2e+02 Score=18.61 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHH
Q psy6108 48 LEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIG 109 (131)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~ 109 (131)
+..++..-+.+.++.|++..|..+++..++.... . .|=+....+|.+++..++.
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGdWIT-----~---~~Lkh~n~MSk~Qik~L~~ 138 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLGDWIT-----K---NFLKHPNRMSKDQIKTLCE 138 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhhhHHH-----H---HHHhccchhhHHHHHHHHH
Confidence 3444444444557889999999999876543222 1 1222345667766555444
No 245
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=31.48 E-value=92 Score=16.81 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 38 (131)
+++++++..++.+|+.+=..+ .+..+-...+..
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~ 59 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG---LTLEEALEELEE 59 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Confidence 688999999999998876532 455555554544
No 246
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=31.35 E-value=1.2e+02 Score=18.57 Aligned_cols=56 Identities=18% Similarity=0.388 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFES 67 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 67 (131)
.+++.....+..++.... ..|.+...++...|. ..++.+..+++.... .|.|.|..
T Consensus 3 ~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~~--~GlV~~~~ 58 (154)
T COG1321 3 MLSETEEDYLETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLER--LGLVEYEP 58 (154)
T ss_pred ccchHHHHHHHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHHH--CCCeEEec
Confidence 456777777888887665 668999998888664 455556566666532 44555433
No 247
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.11 E-value=93 Score=20.44 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHhhh-hcCCCCCceeHHHHHHHHHHcCCCCCH
Q psy6108 2 LTLDEEQITEWKEAFAL-FDKNGSGKIVSKYVGTVMRAIGRNPTE 45 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~-~D~~~~g~i~~~e~~~~l~~~~~~~~~ 45 (131)
..|+++|+..|...-+. .|.-.-...+..+++.++...|..-+-
T Consensus 142 ~rltd~q~d~l~~W~~~~~drl~Vnsatr~ev~~alnrtGH~rDi 186 (225)
T PF09883_consen 142 ARLTDEQVDRLYEWTRDGTDRLNVNSATRSEVRAALNRTGHARDI 186 (225)
T ss_pred cccCHHHHHHHHHHhhCCCCeEEEecccHHHHHHHHHhcccccce
Confidence 46788888887665442 121112234778888888887655443
No 248
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=30.54 E-value=1e+02 Score=17.48 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=3.1
Q ss_pred eeHHHHHHHH
Q psy6108 27 IVSKYVGTVM 36 (131)
Q Consensus 27 i~~~e~~~~l 36 (131)
|+.++...++
T Consensus 48 v~~~~~~~Vl 57 (108)
T PF14842_consen 48 VSPEEVEEVL 57 (108)
T ss_dssp --HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4444333333
No 249
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.46 E-value=1.4e+02 Score=18.53 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=23.2
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
.+.+|.+++...|...+.......+.+.+..+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L 70 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFL 70 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHH
Confidence 46788888888888777777776666665554
No 250
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=30.43 E-value=77 Score=16.97 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCceeHHHHHH
Q psy6108 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGT 34 (131)
Q Consensus 3 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 34 (131)
.|++++.+.|+.........+...|+..++..
T Consensus 11 ~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le~ 42 (83)
T PF02758_consen 11 ELSEEEFKRFKWLLKEPVKEGFPPIPRGELEK 42 (83)
T ss_dssp TS-HHHHHHHHHHHHSTSSTTTCSSSHCHHHH
T ss_pred hCCHHHHHHHHHHhcchhhcCCCCCCHHHHhh
Confidence 46777777777777644445556666655544
No 251
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=30.24 E-value=35 Score=17.24 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=15.1
Q ss_pred HHHhhCCCCCCceeHHHHHH
Q psy6108 107 LIGLADENNTGHVRYEEFAK 126 (131)
Q Consensus 107 ~~~~~d~~~dg~i~~~eF~~ 126 (131)
+...++.+++|.|+...+..
T Consensus 20 L~~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHTT
T ss_pred HHHHHHhcCCCcEeHHHHHc
Confidence 55667888899998877654
No 252
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.23 E-value=1.3e+02 Score=18.14 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=21.0
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
+.+|.+++...+..-++..+...+.+.++.+
T Consensus 35 ~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 35 GHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred CCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 3477777777777766666666666665555
No 253
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=30.22 E-value=1.2e+02 Score=17.85 Aligned_cols=103 Identities=12% Similarity=0.263 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc------CCCCCCc-------ccHHHHHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV------DPDDVGS-------VDFESFLK 70 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~------d~~~~g~-------i~~~ef~~ 70 (131)
|++.+.+-+..+|. .|.++..++...+... .+.....+..++..+ ....+|+ |+.++|..
T Consensus 2 Lt~~E~~VM~vlW~------~~~~t~~eI~~~l~~~-~~~~~tTv~T~L~rL~~KG~v~~~k~gr~~~Y~p~vs~ee~~~ 74 (130)
T TIGR02698 2 ISDAEWEVMRVVWT------LGETTSRDIIRILAEK-KDWSDSTIKTLLGRLVDKGCLTTEKEGRKFIYTALVSEDEAVE 74 (130)
T ss_pred CCHHHHHHHHHHHc------CCCCCHHHHHHHHhhc-cCCcHHHHHHHHHHHHHCCceeeecCCCcEEEEecCCHHHHHH
Confidence 67778777777773 2457888888877542 335555555554443 2223454 66666654
Q ss_pred HHhccC-C--CCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhCCCCCC
Q psy6108 71 LMANHI-P--NVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTG 117 (131)
Q Consensus 71 ~~~~~~-~--~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d~~~dg 117 (131)
...... . -......+-..| ++ +..+|+++++.+-+.++.....
T Consensus 75 ~~~~~~~~~~f~gs~~~ll~~l--~~--~~~ls~eele~L~~li~~~~~~ 120 (130)
T TIGR02698 75 NAAQELFSRICSRKVGAVIADL--IE--ESPLSQTDIEKLEKLLSEKKST 120 (130)
T ss_pred HHHHHHHHHHHCCCHHHHHHHH--Hh--cCCCCHHHHHHHHHHHHhcccC
Confidence 332211 0 000111111111 21 5679999998888877654433
No 254
>KOG2525|consensus
Probab=30.05 E-value=1.4e+02 Score=22.27 Aligned_cols=104 Identities=12% Similarity=0.220 Sum_probs=59.2
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc---CCCCCCHHHHHHHHHhhCcCCCC
Q psy6108 22 NGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH---IPNVDSTAELLEAFQVFDKDGEK 98 (131)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~---~~~~~~~~~~~~~f~~~d~~~~~ 98 (131)
+..+.++.......|..+|.+ .+..--.+.+....+|+|.+ --|+..+-.. .-.......+..+=..+--||..
T Consensus 46 ~~~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGSt--caF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqp 122 (496)
T KOG2525|consen 46 DNPQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKGST--CAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQP 122 (496)
T ss_pred CCccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCcch--HHHHHHHHHhcccccccccChhhcchhheEEECCEE
Confidence 344667888888888888866 33333345666666666632 2333332211 11223334555555556667999
Q ss_pred CCHHHHHHHHHh-------hCCCCCCceeHHHHHHHH
Q psy6108 99 LSDQEVDELIGL-------ADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 99 ls~~~~~~~~~~-------~d~~~dg~i~~~eF~~~~ 128 (131)
+|++.+..+|-. .-.+..+.-+|=+|+..+
T Consensus 123 IS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~l 159 (496)
T KOG2525|consen 123 ISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLL 159 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhh
Confidence 999888776653 223344456666666543
No 255
>KOG4286|consensus
Probab=29.25 E-value=48 Score=26.07 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=38.5
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCc
Q psy6108 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62 (131)
Q Consensus 13 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~ 62 (131)
.=.++.||+..+|.|+.-+|+..+..+......+.+.-+|+.+..++.-.
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~ 522 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQC 522 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhH
Confidence 33567789999999999999998888876677777778888886555443
No 256
>KOG1954|consensus
Probab=29.12 E-value=69 Score=23.21 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy6108 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAK 126 (131)
Q Consensus 96 ~~~ls~~~~~~~~~~~d~~~dg~i~~~eF~~ 126 (131)
+..+....+-.+++..|.|.||.++-+||.-
T Consensus 471 ~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 471 KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4577778889999999999999999999963
No 257
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.09 E-value=75 Score=15.04 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=21.5
Q ss_pred CCcee-HHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 24 SGKIV-SKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 24 ~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
.|.|+ ...+...|...|+..++..+..+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 46675 444555556668888888888877653
No 258
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=28.98 E-value=70 Score=16.24 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.0
Q ss_pred CCCCCceeHHHHHHHHh
Q psy6108 113 ENNTGHVRYEEFAKVMT 129 (131)
Q Consensus 113 ~~~dg~i~~~eF~~~~~ 129 (131)
.|.||++|-..|++++.
T Consensus 5 TN~dGrLSTT~~iQffg 21 (60)
T PF10841_consen 5 TNADGRLSTTAFIQFFG 21 (60)
T ss_pred cCCCCcEehHHHHHHHH
Confidence 47799999999998764
No 259
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=28.77 E-value=1.3e+02 Score=17.54 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=37.9
Q ss_pred hhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy6108 16 FALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLK 70 (131)
Q Consensus 16 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 70 (131)
|...--.++..+|.+++..+|...|.......+..++..+. | .+..+.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~----g-K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK----G-KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 33333455667999999999999999999999988888882 2 56666664
No 260
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.35 E-value=50 Score=17.00 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=10.9
Q ss_pred CCceeHHHHHHHHhc
Q psy6108 116 TGHVRYEEFAKVMTL 130 (131)
Q Consensus 116 dg~i~~~eF~~~~~~ 130 (131)
.|.|+++.|++.++.
T Consensus 37 ~g~I~~d~~lK~vR~ 51 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRS 51 (65)
T ss_dssp TTSS-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 577999999887653
No 261
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=27.84 E-value=1.6e+02 Score=18.37 Aligned_cols=37 Identities=8% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCH-HHHHHHHHhcCCC
Q psy6108 22 NGSGKIVSKYVGTVMRAIGRNPTE-QELEDLLKEVDPD 58 (131)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~ 58 (131)
.+...|+..++..++...|..... ......|....++
T Consensus 111 ~~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~p~ 148 (172)
T cd04790 111 KEQRLVTKEKWVAILKAAGMDEADMRRWHIEFEKMEPE 148 (172)
T ss_pred cccccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCcH
Confidence 344568888888888888855554 5556667766553
No 262
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=27.82 E-value=66 Score=19.61 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHhhhhcCCCCCce
Q psy6108 5 DEEQITEWKEAFALFDKNGSGKI 27 (131)
Q Consensus 5 ~~~~~~~~~~~F~~~D~~~~g~i 27 (131)
|..++.++..+|..++.+.+|.-
T Consensus 45 T~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 45 TEGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHHHcCCCCccCc
Confidence 57889999999999988876543
No 263
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=27.33 E-value=39 Score=18.19 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCC
Q psy6108 51 LLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG 96 (131)
Q Consensus 51 ~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~ 96 (131)
++..+..+..+.++..+....+.. .....+..+|..+...|
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~~-----~d~~~~~ri~~FL~~~G 82 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIKG-----IDVNKIRRIYDFLERWG 82 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTTS-----SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCcccHHHHHHHccc-----cCHHHHHHHHHHHHHcC
Confidence 344434455677888877777661 34466666776665443
No 264
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=26.80 E-value=1.2e+02 Score=16.64 Aligned_cols=52 Identities=4% Similarity=0.151 Sum_probs=25.9
Q ss_pred CCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 24 SGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+|.++..|...+-.-+ ...........+...+........++.+|...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRA 65 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 5888888865543322 122333333333333322222226778887777654
No 265
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.63 E-value=68 Score=13.75 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=3.7
Q ss_pred CCCHHHHHHH
Q psy6108 3 TLDEEQITEW 12 (131)
Q Consensus 3 ~l~~~~~~~~ 12 (131)
+++.+++.++
T Consensus 16 Gls~eeir~F 25 (30)
T PF08671_consen 16 GLSKEEIREF 25 (30)
T ss_dssp T--HHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4444444444
No 266
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=25.62 E-value=1.8e+02 Score=18.40 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=43.9
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC-CCCCCHHHHHHHHHhhCcCCCCCCHHHH
Q psy6108 26 KIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI-PNVDSTAELLEAFQVFDKDGEKLSDQEV 104 (131)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~d~~~~~ls~~~~ 104 (131)
.|+.++|+.-.+.-.....++-+..+.-.+ ..|.++..+|..-+...- .+..+.+.+..+=+.+ -.+..+.+.++
T Consensus 3 IIdFnelKNKvkdkDiDKFE~YiY~ly~~~---a~Gklsm~dFsk~I~~YmeeNNISqeKf~niQkk~-mERYGfd~~~i 78 (186)
T PF12983_consen 3 IIDFNELKNKVKDKDIDKFEEYIYSLYYDV---AEGKLSMADFSKKIMEYMEENNISQEKFLNIQKKF-MERYGFDPSEI 78 (186)
T ss_pred eecHHHHhhhcccccHHHHHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHhCCCHHHH
Confidence 355566655444433333333333333333 467788888876655443 2333444433332111 01344667888
Q ss_pred HHHHHhhCCCCC
Q psy6108 105 DELIGLADENNT 116 (131)
Q Consensus 105 ~~~~~~~d~~~d 116 (131)
+.-++.+..|-+
T Consensus 79 E~q~K~~Gid~~ 90 (186)
T PF12983_consen 79 EKQMKSMGIDMS 90 (186)
T ss_pred HHHHHHcCCCcc
Confidence 888887765543
No 267
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=25.53 E-value=52 Score=21.06 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhh---------hhcCCCCCceeHHHHHHHHHHc
Q psy6108 2 LTLDEEQITEWKEAFA---------LFDKNGSGKIVSKYVGTVMRAI 39 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~---------~~D~~~~g~i~~~e~~~~l~~~ 39 (131)
+++++.++..+..+|. .|-++.+|.++..+++.+...+
T Consensus 5 l~i~~~~v~~~i~Ll~eG~TvPFIARYRKe~TG~Lde~~lR~i~~~~ 51 (193)
T PF09371_consen 5 LNIKPKQVENVIKLLDEGNTVPFIARYRKEMTGGLDEVQLREIQDRY 51 (193)
T ss_dssp ----HHHHHHHHHHHHTT--HHHHHHH-HHHHTS--HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhCCCCcchhhhhhhhhhCCCCHHHHHHHHHHH
Confidence 5677777777777763 3445567778888777765543
No 268
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=25.38 E-value=30 Score=14.08 Aligned_cols=9 Identities=44% Similarity=0.804 Sum_probs=5.4
Q ss_pred CCCCCceeH
Q psy6108 113 ENNTGHVRY 121 (131)
Q Consensus 113 ~~~dg~i~~ 121 (131)
.+.||.++|
T Consensus 17 t~~dgtvsy 25 (27)
T PF04022_consen 17 TNQDGTVSY 25 (27)
T ss_pred eccCceEec
Confidence 456666665
No 269
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=25.32 E-value=1.1e+02 Score=15.53 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=5.6
Q ss_pred CCCCCHHHHHHHHHhc
Q psy6108 40 GRNPTEQELEDLLKEV 55 (131)
Q Consensus 40 ~~~~~~~~~~~~~~~~ 55 (131)
|..++.+++..++..+
T Consensus 12 g~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAI 27 (66)
T ss_dssp T----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3344444444444444
No 270
>KOG4286|consensus
Probab=24.96 E-value=1.4e+02 Score=23.77 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=38.0
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCC
Q psy6108 49 EDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKL 99 (131)
Q Consensus 49 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~l 99 (131)
.-++..||...+|.|..-+|...+..+++. ...+..+.+|......|...
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~-~leek~~ylF~~vA~~~sq~ 522 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKA-HLEDKYRYLFKQVASSTSQC 522 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcc-hhHHHHHHHHHHHcCchhhH
Confidence 567889999999999999998777766433 55577888888877664433
No 271
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=24.55 E-value=1.3e+02 Score=16.20 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCc
Q psy6108 1 KLTLDEEQITEWKEAFALFDKNGSGK 26 (131)
Q Consensus 1 ~~~l~~~~~~~~~~~F~~~D~~~~g~ 26 (131)
.|+||+++...|..+...+.......
T Consensus 12 ~L~LT~eQ~~~~~~i~~~~~~~~~~~ 37 (100)
T PF07813_consen 12 ELNLTDEQKAKWRAIRQAMKAKMKPL 37 (100)
T ss_dssp TS--THHHHHHHHHHHHHHCTTS---
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999887765444
No 272
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=24.43 E-value=1.5e+02 Score=19.67 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPD 58 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 58 (131)
+.+++++++.+...+...+..+.-.++..+.+.-|.. -+..+..+|.....+
T Consensus 143 Idl~~~~~q~v~~~i~~l~~~r~~~~~~~~~~~~L~~-----~~~dl~~lF~~vkkD 194 (233)
T TIGR02878 143 IDVPEDQVQRVDSHLSYLENFRFQQRSEDEKEEQLSL-----MRGDLKALFDGVKED 194 (233)
T ss_pred eecCHHHHHHHHHHHHHHHhhhhhccChHHHHHHHHH-----HHHHHHHHHcccccC
Confidence 4567888888888777777666666777766665553 345566777776544
No 273
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=24.36 E-value=1.5e+02 Score=16.93 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHH
Q psy6108 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDL 51 (131)
Q Consensus 5 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 51 (131)
+++......+....+=...+|.++..+++.+....| ++..++..+
T Consensus 43 ~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~g--ltq~~lA~~ 87 (127)
T TIGR03830 43 DPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKLG--LSQREAAEL 87 (127)
T ss_pred cHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcC--CCHHHHHHH
Confidence 344444444444433344556666666666555443 444444443
No 274
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=24.17 E-value=84 Score=18.69 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=5.0
Q ss_pred HHHcCCCCCHHHHHHH
Q psy6108 36 MRAIGRNPTEQELEDL 51 (131)
Q Consensus 36 l~~~~~~~~~~~~~~~ 51 (131)
....|...++.++...
T Consensus 93 A~~~gi~vsd~ev~~~ 108 (154)
T PF13624_consen 93 AKKLGISVSDAEVDDA 108 (154)
T ss_dssp HHHTT----HHHHHHH
T ss_pred HHHcCCCCCHHHHHHH
Confidence 3334444444444433
No 275
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=23.92 E-value=96 Score=14.54 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=14.6
Q ss_pred eHHHHHHHHHHcCCCCCHHHH
Q psy6108 28 VSKYVGTVMRAIGRNPTEQEL 48 (131)
Q Consensus 28 ~~~e~~~~l~~~~~~~~~~~~ 48 (131)
+.+++..+.+..|+..+..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667777777777777776554
No 276
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=23.89 E-value=1.8e+02 Score=17.54 Aligned_cols=48 Identities=15% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy6108 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLK 53 (131)
Q Consensus 4 l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 53 (131)
++++.++.+.+.| .+...++..|-...++-+++. +....-+.+..++.
T Consensus 49 l~~~~l~~Ld~~y-~l~~s~NaEI~~rW~~l~i~~-~~~~~~~~v~~fL~ 96 (143)
T PF09127_consen 49 LSPEKLQALDKVY-KLSNSKNAEIRFRWLRLAIKA-KYEPALPQVEEFLG 96 (143)
T ss_dssp -CHHHHHHHHHHH-CHCT-SSHHHHHHHHHHHHHT-T-GGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 4555555555555 344444445555555444442 33333444444443
No 277
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=23.85 E-value=1.5e+02 Score=16.89 Aligned_cols=44 Identities=9% Similarity=0.238 Sum_probs=37.1
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 27 IVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
+|.+++..+|...|.......+..+++.+. | .+..+.+......
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa----G-k~V~eli~~g~~k 60 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN----G-KNIDEVISKGKEL 60 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc----C-CCHHHHHHHHHhh
Confidence 999999999999999999999999999972 2 5778888766553
No 278
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.81 E-value=2.8e+02 Score=19.94 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=30.4
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
..|+.+||+..|.. +-...+.....|-+.-+.==-=++-|.||+..+..+.
T Consensus 6 ~~~~LeeLe~kLa~-~d~~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie 56 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDNSKDSVMDKISEAQDSILPLRLQFNEFIQTMANIE 56 (379)
T ss_pred CCCcHHHHHHHHhc-CCchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 45788888887773 3333333334444443322223677899999888774
No 279
>PRK10945 gene expression modulator; Provisional
Probab=23.52 E-value=1.3e+02 Score=15.93 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred cHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCCCCHHHHHHHHHhhC
Q psy6108 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLAD 112 (131)
Q Consensus 64 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ls~~~~~~~~~~~d 112 (131)
+-.+|+.-++.. ...+.+..+|.. +...++.+++..+...+|
T Consensus 7 tk~dyL~~fRrc----ss~eTLEkvie~---~~~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 7 TKTDYLMRLRRC----QTIDTLERVIEK---NKYELSDDELAVFYSAAD 48 (72)
T ss_pred cHHHHHHHHHhc----CcHHHHHHHHHH---hhccCCHHHHHHHHHHHH
Confidence 445555555544 333455544433 356666667666666555
No 280
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=23.50 E-value=83 Score=17.11 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHhhCCCCCCceeHHHHHHH
Q psy6108 107 LIGLADENNTGHVRYEEFAKV 127 (131)
Q Consensus 107 ~~~~~d~~~dg~i~~~eF~~~ 127 (131)
+.+.++.+.+|.|+.+-+..+
T Consensus 28 L~~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 28 LREQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred HHHHhcCCCCCCEeHHHHhcc
Confidence 556677788999988766543
No 281
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.41 E-value=1.6e+02 Score=16.79 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=23.7
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy6108 25 GKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55 (131)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (131)
+.+|.+++...|...+..++...+.+.+..+
T Consensus 22 ~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 22 EHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp SSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 4899999999999888888888777766655
No 282
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=23.39 E-value=83 Score=17.06 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy6108 99 LSDQEVDELIGLADENNTGHVRYEEFAKVM 128 (131)
Q Consensus 99 ls~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 128 (131)
+++++...+.--.+.-..|.|+.+.|...+
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL 45 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMAL 45 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666665555565666667766666554
No 283
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.31 E-value=1.7e+02 Score=17.12 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy6108 46 QELEDLL 52 (131)
Q Consensus 46 ~~~~~~~ 52 (131)
.+++.++
T Consensus 83 ~ElRsIl 89 (114)
T COG1460 83 DELRSIL 89 (114)
T ss_pred HHHHHHH
Confidence 3333333
No 284
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=23.29 E-value=1e+02 Score=18.66 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHhhhhcC
Q psy6108 2 LTLDEEQITEWKEAFALFDK 21 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~ 21 (131)
.++|+++|+.++.-|...=.
T Consensus 9 ~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 9 AGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 57999999999999987644
No 285
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.25 E-value=74 Score=20.15 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHH
Q psy6108 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDL 51 (131)
Q Consensus 9 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 51 (131)
-+.+.++|..||+..=-..+.+++..++...+..-+...++.+
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Av 94 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEAT 94 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHH
Confidence 4567888999999877778999999988877666565555443
No 286
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=23.08 E-value=1.9e+02 Score=17.56 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=29.3
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy6108 23 GSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD 56 (131)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (131)
.....|.+|+...|...|...+...+.+.++.+.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 3467899999999999999999999988888765
No 287
>KOG1264|consensus
Probab=23.02 E-value=4.3e+02 Score=21.73 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=37.2
Q ss_pred cCCCCCceeHHHHHHHHHHcCCCCCHHHHHHH-----HHhcCCCCCCcccHHHHHHHHhcc
Q psy6108 20 DKNGSGKIVSKYVGTVMRAIGRNPTEQELEDL-----LKEVDPDDVGSVDFESFLKLMANH 75 (131)
Q Consensus 20 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~-----~~~~d~~~~g~i~~~ef~~~~~~~ 75 (131)
|.-+++-++..+|..+...+-+......+... ...-+...-..|.+.+|..++...
T Consensus 190 d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~ 250 (1267)
T KOG1264|consen 190 DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHE 250 (1267)
T ss_pred hhhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhh
Confidence 45567889999999998887554444443333 222233334689999999998754
No 288
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=22.56 E-value=2.3e+02 Score=18.57 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=30.3
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy6108 21 KNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD 56 (131)
Q Consensus 21 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (131)
.|..|....+++...++.-+..++.+.+..+...-+
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 467799999999999998888999988888877654
No 289
>PRK08181 transposase; Validated
Probab=22.35 E-value=2.3e+02 Score=19.16 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
++.|+.+.+...++.+.++--.+.+..+.... ..+..+|.+|+..+..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~ 51 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIAE 51 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHHH
Confidence 35677777888888877664445555544433 3455889998887754
No 290
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=22.21 E-value=1.5e+02 Score=16.06 Aligned_cols=66 Identities=14% Similarity=0.287 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy6108 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRA----IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLM 72 (131)
Q Consensus 1 ~~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (131)
|++.+.+++..+-.-....|-. +...++.++.. ++.+++.+....+...+-.++- ..++......+
T Consensus 7 Kt~V~~~~i~kLA~sv~~adlq-----dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~ 76 (79)
T PF14069_consen 7 KTGVNKEDIFKLANSVQKADLQ-----DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMM 76 (79)
T ss_pred hcCCCHHHHHHHHHhcchhhcc-----cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHH
Confidence 3556677777776666555443 34445555443 4778888888888777744333 44454444443
No 291
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=22.16 E-value=1.1e+02 Score=14.73 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=17.2
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDP 57 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 57 (131)
.|.++..+++..+. .+...+-.+++.+|.
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 57778877777653 455555555555543
No 292
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=22.09 E-value=1e+02 Score=14.24 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDL 51 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 51 (131)
-.+|+++...|.++...+..+ .+..+...++..-+..++..-
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~--------~W~~Ia~~~~~~Rt~~qc~~~ 43 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD--------NWKKIAKRMPGGRTAKQCRSR 43 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT--------HHHHHHHHHSSSSTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc--------HHHHHHHHcCCCCCHHHHHHH
Confidence 457888888888888887655 344444444433444444433
No 293
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=22.01 E-value=96 Score=16.56 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.4
Q ss_pred CCCCCCcccHHHHHHHHhc
Q psy6108 56 DPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 56 d~~~~g~i~~~ef~~~~~~ 74 (131)
-.+..|.|+++.|++...-
T Consensus 12 ~~n~~G~iTl~gfLa~W~l 30 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWSL 30 (76)
T ss_pred EEcCCCcCcHHHHHHHHHH
Confidence 3577899999999988663
No 294
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=21.91 E-value=45 Score=20.29 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=7.9
Q ss_pred CCceeHHHHHHH
Q psy6108 24 SGKIVSKYVGTV 35 (131)
Q Consensus 24 ~g~i~~~e~~~~ 35 (131)
+|.||++||..+
T Consensus 25 tG~iTPeEFV~A 36 (145)
T PF03986_consen 25 TGVITPEEFVAA 36 (145)
T ss_dssp HS---HHHHHHH
T ss_pred cceeCHHHHHHh
Confidence 599999999987
No 295
>KOG0483|consensus
Probab=21.91 E-value=2.4e+02 Score=18.31 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC
Q psy6108 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP 43 (131)
Q Consensus 1 ~~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~ 43 (131)
|..|+.+++..+...|.. ..++++..-..+.+.+|+.+
T Consensus 54 k~Rlt~eQ~~~LE~~F~~-----~~~L~p~~K~~LAk~LgL~p 91 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFES-----EKKLEPERKKKLAKELGLQP 91 (198)
T ss_pred cccccHHHHHHhHHhhcc-----ccccChHHHHHHHHhhCCCh
Confidence 467889999999988853 35788888777777777443
No 296
>PRK10356 hypothetical protein; Provisional
Probab=21.88 E-value=2.8e+02 Score=19.07 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQE 47 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~ 47 (131)
..+++++...+..++..+...-++.....++..+|......|+.-.
T Consensus 109 ~~ls~~e~~~L~~la~~Ykv~~~~~~~~~~~~~LL~RVDiIP~slv 154 (274)
T PRK10356 109 GQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMV 154 (274)
T ss_pred cCCCHHHHHHHHHHHHHcCCCcCCCcchhhHHHHHHHhCcCCHHHH
Confidence 3578888888999999888775565555566666666655554433
No 297
>KOG1411|consensus
Probab=21.86 E-value=63 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCceeHHHH
Q psy6108 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYV 32 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~ 32 (131)
++|+|+|++.+.+-|..+= .++|.||...+
T Consensus 378 Tgl~peQv~~l~ke~~iYm-T~dGRiS~aG~ 407 (427)
T KOG1411|consen 378 TGLNPEQVDWLTKEYHIYL-TKDGRISMAGL 407 (427)
T ss_pred cCCCHHHHHHHHhhheeee-ccCceEeeccc
Confidence 4688888888888887663 45688887544
No 298
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.51 E-value=1.6e+02 Score=16.15 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=32.1
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q psy6108 24 SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74 (131)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (131)
.|.+|.++...+.. .+...+....++... ...|.-.|..|+.++..
T Consensus 32 ~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L--~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIMA---KPTSFSQNVALLNLL--PKRGPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHHc---CCCcHHHHHHHHHHH--HHhChhHHHHHHHHHHh
Confidence 47888877666543 234556667777776 34677889999999974
No 299
>KOG4403|consensus
Probab=21.50 E-value=1e+02 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=24.8
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q psy6108 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRA 38 (131)
Q Consensus 9 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 38 (131)
.+.+..+-+.+|.|.+|.|..+|=-.+++.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 356677788999999999999988777765
No 300
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=21.44 E-value=1.3e+02 Score=15.17 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=14.2
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCC
Q psy6108 15 AFALFDKNGSGKIVSKYVGTVMRAIGR 41 (131)
Q Consensus 15 ~F~~~D~~~~g~i~~~e~~~~l~~~~~ 41 (131)
++..+..+...-++.++...-....|.
T Consensus 9 v~~~l~t~~~~GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 9 VLKRLNTSSSQGLSSEEVEERRKKYGP 35 (69)
T ss_dssp HHHHHTTBTSSBBTHHHHHHHHHHHSS
T ss_pred HHHHHCcCCCCCCCHHHHHHHHHhccc
Confidence 344444444455566666655555543
No 301
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.42 E-value=1.4e+02 Score=15.50 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=6.5
Q ss_pred CCCCCHHHHHHHHHh
Q psy6108 40 GRNPTEQELEDLLKE 54 (131)
Q Consensus 40 ~~~~~~~~~~~~~~~ 54 (131)
|...+++.+..+|..
T Consensus 57 G~~~~ediLd~IFs~ 71 (73)
T PF12631_consen 57 GEVVTEDILDNIFSN 71 (73)
T ss_dssp TSS--HHHHHHHHCT
T ss_pred CCCChHHHHHHHHHh
Confidence 444455555555543
No 302
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=21.36 E-value=1e+02 Score=13.82 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHhhCCCCCCc
Q psy6108 99 LSDQEVDELIGLADENNTGH 118 (131)
Q Consensus 99 ls~~~~~~~~~~~d~~~dg~ 118 (131)
.+.++++.++.-.-.+.||.
T Consensus 13 cs~edL~~L~~~Lt~dkdG~ 32 (35)
T PF13099_consen 13 CSNEDLKDLVDILTHDKDGK 32 (35)
T ss_pred CCHHHHHHHHHHHhcCCCCC
Confidence 56677777777766666665
No 303
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.26 E-value=1.1e+02 Score=14.30 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy6108 30 KYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKL 71 (131)
Q Consensus 30 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 71 (131)
+|...+|..+| ..+.++......... ...++.++.+..
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 46667777776 666677777776643 223555555544
No 304
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=21.16 E-value=83 Score=18.82 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=10.8
Q ss_pred CCceeHHHHHHHHh
Q psy6108 116 TGHVRYEEFAKVMT 129 (131)
Q Consensus 116 dg~i~~~eF~~~~~ 129 (131)
+|.|+..||++.|.
T Consensus 42 ng~IsVreFVr~La 55 (131)
T PF00427_consen 42 NGQISVREFVRALA 55 (131)
T ss_dssp TTSS-HHHHHHHHH
T ss_pred cCCCcHHHHHHHHH
Confidence 68899999998764
No 305
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=21.10 E-value=79 Score=17.04 Aligned_cols=11 Identities=18% Similarity=0.615 Sum_probs=7.2
Q ss_pred CceeHHHHHHH
Q psy6108 117 GHVRYEEFAKV 127 (131)
Q Consensus 117 g~i~~~eF~~~ 127 (131)
+.||++||+.+
T Consensus 34 mSIS~eeY~~L 44 (81)
T PF10891_consen 34 MSISFEEYIRL 44 (81)
T ss_pred cEeeHHHHHHH
Confidence 45777777654
No 306
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=21.07 E-value=1.4e+02 Score=16.52 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHhhhh
Q psy6108 2 LTLDEEQITEWKEAFALF 19 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~ 19 (131)
.+|+++++..|.......
T Consensus 59 Y~Ls~eEf~~W~~av~rh 76 (90)
T PF06627_consen 59 YGLSEEEFESWQRAVDRH 76 (90)
T ss_dssp TTSSHHHHHHHHHHCCT-
T ss_pred hCCCHHHHHHHHHHHHHH
Confidence 456777777776665544
No 307
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=21.07 E-value=1.4e+02 Score=16.68 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=9.7
Q ss_pred CceeHHHHHHHHHH
Q psy6108 25 GKIVSKYVGTVMRA 38 (131)
Q Consensus 25 g~i~~~e~~~~l~~ 38 (131)
|.|+.+||...|..
T Consensus 38 ~~i~~EeF~~~Lq~ 51 (92)
T smart00549 38 GTITAEEFTSRLQE 51 (92)
T ss_pred CCCCHHHHHHHHHH
Confidence 66777777766655
No 308
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=20.96 E-value=43 Score=18.28 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=32.0
Q ss_pred cccHHHHHHHHhccCCCCCCHHHHHHHHHhhCcCCCC---CCHHHHHHHHHhhCCCCCCceeHH
Q psy6108 62 SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK---LSDQEVDELIGLADENNTGHVRYE 122 (131)
Q Consensus 62 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~---ls~~~~~~~~~~~d~~~dg~i~~~ 122 (131)
.++|++++.-++...+-... .. -..+-.|.+|.+ -|..|++..|+.+..|++..+...
T Consensus 19 ~~s~e~L~~~v~~~c~~~~~-q~--ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ih 79 (83)
T cd06404 19 SISLEELCNEVRDMCRFHND-QP--FTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIH 79 (83)
T ss_pred CcCHHHHHHHHHHHhCCCCC-Cc--EEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEE
Confidence 56777776666554321000 00 001123333553 457888888888888888776543
No 309
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=20.90 E-value=2e+02 Score=17.18 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy6108 30 KYVGTVMR 37 (131)
Q Consensus 30 ~e~~~~l~ 37 (131)
..|..+|.
T Consensus 67 P~l~~WL~ 74 (129)
T PF13543_consen 67 PSLRQWLR 74 (129)
T ss_pred CcHHHHhh
Confidence 33444443
No 310
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=20.75 E-value=1.5e+02 Score=16.58 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=24.4
Q ss_pred cCCCCCCcccHHHHHHHHhccCCCCCCHHHHHHHHHh
Q psy6108 55 VDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQV 91 (131)
Q Consensus 55 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 91 (131)
-..++...++|.+-...+...--......++..+++.
T Consensus 6 ~~~~G~y~l~f~eA~~AC~~~gA~lAs~~QL~~AW~~ 42 (95)
T cd03521 6 ELENGSQGLGLRAARQSCASLGARLASAAELRRAVVE 42 (95)
T ss_pred eCCCCccccCHHHHHHHHHHcCCEeccHHHHHHHHHH
Confidence 3456667778888777777665455566666666654
No 311
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=20.51 E-value=1.4e+02 Score=15.06 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHhhhhcC
Q psy6108 2 LTLDEEQITEWKEAFALFDK 21 (131)
Q Consensus 2 ~~l~~~~~~~~~~~F~~~D~ 21 (131)
+++++.+...+...|.....
T Consensus 27 IGv~~~e~~aIi~~F~~~~~ 46 (57)
T PF05952_consen 27 IGVDKDEQKAIIDAFKDEES 46 (57)
T ss_pred ecCCHHHHHHHHHHHccccc
Confidence 35667777777777765443
No 312
>KOG2871|consensus
Probab=20.49 E-value=2.4e+02 Score=20.46 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q psy6108 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMANHI 76 (131)
Q Consensus 44 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (131)
+.+++++.|+.+|+.+.|.|+-.-+..++....
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 467889999999999999999888888877654
No 313
>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.
Probab=20.43 E-value=2.2e+02 Score=17.49 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhhcC------CCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhc
Q psy6108 7 EQITEWKEAFALFDK------NGSGKIVSKYVGTVMRAI-GRNPTEQELEDLLKEV 55 (131)
Q Consensus 7 ~~~~~~~~~F~~~D~------~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 55 (131)
...+.+.++|..+|. ..+..++...++..+..+ +...+...+.+|...+
T Consensus 3 ~~y~~L~~~F~~ldtv~~~l~~R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI~~i~ 58 (163)
T PF08839_consen 3 EKYEFLAELFRALDTVVSMLRNRKETPTFQKIKPSVENMTKRRFTEEHLAQIKYIY 58 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---BHHHHHHHHHHHHSS---HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcCHHHHHHHHHhC
Confidence 345566777776653 444578888888888775 7778888888876665
No 314
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=20.18 E-value=2e+02 Score=18.15 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=9.1
Q ss_pred CCCCceeHHHHHHHHHHcC
Q psy6108 22 NGSGKIVSKYVGTVMRAIG 40 (131)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~ 40 (131)
||+|.+.+-=+..+|...|
T Consensus 127 DGNGRt~Rll~~l~L~~~g 145 (186)
T TIGR02613 127 NGNGRHARLATDLLLEQQG 145 (186)
T ss_pred CCCcHHHHHHHHHHHHHCC
Confidence 5555555544444444444
No 315
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.13 E-value=2.2e+02 Score=17.30 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=26.2
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q psy6108 28 VSKYVGTVMRAIGRNPTEQELEDLLKEVDP 57 (131)
Q Consensus 28 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 57 (131)
|.++++.+.....++++++++..++..++.
T Consensus 28 T~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 28 TREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred cHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 788999988878888999999999998865
Done!