RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6108
(131 letters)
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 156 bits (396), Expect = 3e-50
Identities = 74/143 (51%), Positives = 96/143 (67%), Gaps = 17/143 (11%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EEQI E+KEAFALFDK+G G I +K +GTVMR++G+NPTE EL+D++ EVD D G++
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 63
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
DF FL LMA + DS EL+EAF+VFD+D GEKL+D EVDE
Sbjct: 64 DFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDE 123
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
+I AD + GH+ YEEF ++M
Sbjct: 124 MIREADIDGDGHINYEEFVRMMV 146
Score = 63.3 bits (155), Expect = 5e-14
Identities = 21/70 (30%), Positives = 45/70 (64%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
+++ E EAF +FD++G+G I + + VM +G T+ E++++++E D D G ++
Sbjct: 78 EQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHIN 137
Query: 65 FESFLKLMAN 74
+E F+++M +
Sbjct: 138 YEEFVRMMVS 147
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 154 bits (393), Expect = 2e-49
Identities = 73/143 (51%), Positives = 97/143 (67%), Gaps = 17/143 (11%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EEQI E+KEAF+LFDK+G G I +K +GTVMR++G+NPTE EL+D++ EVD D G++
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
DF FL +MA + + DS E+ EAF+VFDKD GEKL+D+EVDE
Sbjct: 65 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 124
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
+I AD + G V YEEF ++MT
Sbjct: 125 MIREADIDGDGQVNYEEFVQMMT 147
Score = 84.9 bits (211), Expect = 6e-22
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
D + E +EAF +FDK+G+G I + + VM +G T++E++++++E D D G V+
Sbjct: 79 DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 138
Query: 65 FESFLKLMANHIPNVDSTA---ELLEAFQVFDKDG 96
+E F+++M + A + + K
Sbjct: 139 YEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMA 173
Score = 29.0 bits (66), Expect = 0.34
Identities = 1/17 (5%), Positives = 2/17 (11%)
Query: 11 EWKEAFALFDKNGSGKI 27
+ K
Sbjct: 161 VIRNKIRAIGKMARVFS 177
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 153 bits (389), Expect = 5e-49
Identities = 53/146 (36%), Positives = 85/146 (58%), Gaps = 17/146 (11%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
++ L EEQ E +EAF LFD +GSG I +K + MRA+G P ++E++ ++ E+D D
Sbjct: 19 RVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGS 78
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQE 103
G++DFE FL +M + DS E+L+AF++FD D GE L+++E
Sbjct: 79 GTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEE 138
Query: 104 VDELIGLADENNTGHVRYEEFAKVMT 129
+ E+I AD N+ + +EF ++M
Sbjct: 139 LQEMIAEADRNDDNEIDEDEFIRIMK 164
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 151 bits (385), Expect = 1e-48
Identities = 60/143 (41%), Positives = 89/143 (62%), Gaps = 18/143 (12%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EEQI E+KEAFALFDK+ SG I + + TVMR++G +P+E E+ DL+ E+D D ++
Sbjct: 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAI 64
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
+F FL LM+ + DS ELLEAF+VFDK+ GEKL+D EVDE
Sbjct: 65 EFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDE 124
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
++ + + G + ++FA +++
Sbjct: 125 MLREVSDGS-GEINIKQFAALLS 146
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 151 bits (384), Expect = 2e-48
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EEQ E EAF+LFD N G + + M+A+G ++E+ DL+ E D + +
Sbjct: 17 LLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLM 76
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
++ F +M I D E+ AFQ+FD D GE L+D+E+
Sbjct: 77 KYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRA 136
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
+I D + G + EF + T
Sbjct: 137 MIEEFDLDGDGEINENEFIAICT 159
Score = 64.1 bits (157), Expect = 3e-14
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L + + E K AF LFD + +GKI K + V + +G T++EL +++E D D G +
Sbjct: 90 LKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEI 149
Query: 64 DFESFLKLMAN 74
+ F+ + +
Sbjct: 150 NENEFIAICTD 160
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 149 bits (379), Expect = 7e-48
Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 17/141 (12%)
Query: 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDF 65
EEQ E +EAF LFD +G+G I K + MRA+G P ++E++ ++ E+D + G ++F
Sbjct: 2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 61
Query: 66 ESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELI 108
FL +M + D+ E+L+AF++FD D GE L+D+E+ E+I
Sbjct: 62 GDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMI 121
Query: 109 GLADENNTGHVRYEEFAKVMT 129
AD + G V +EF ++M
Sbjct: 122 DEADRDGDGEVSEQEFLRIMK 142
Score = 62.9 bits (154), Expect = 6e-14
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
+++ E +AF LFD + +GKI K + V + +G N T++EL++++ E D D G V
Sbjct: 74 EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVS 133
Query: 65 FESFLKLMA 73
+ FL++M
Sbjct: 134 EQEFLRIMK 142
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 148 bits (376), Expect = 2e-47
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 18/141 (12%)
Query: 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDF 65
++Q++E+KEAF LFD +G I + + TV++ G ++ E D G + F
Sbjct: 2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQF 61
Query: 66 ESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELI 108
FL +M + S L +AF+ FD + G++L E E +
Sbjct: 62 PEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFL 121
Query: 109 GLADENNTGHVRYEEFAKVMT 129
G+ + G +RY+ F M
Sbjct: 122 GITETEK-GQIRYDNFINTMF 141
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 147 bits (373), Expect = 1e-46
Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 20/149 (13%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
+ L EE I E+K AF +FD +G G I +K +GTVMR +G+NPT++EL+ +++EVD D
Sbjct: 11 RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGS 70
Query: 61 GSVDFESFLKLMANHI---PNVDSTAELLEAFQVFDKD-----------------GEKLS 100
G++DFE FL +M + S EL F++FDK+ GE ++
Sbjct: 71 GTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVT 130
Query: 101 DQEVDELIGLADENNTGHVRYEEFAKVMT 129
++++++L+ +D+NN G + ++EF K+M
Sbjct: 131 EEDIEDLMKDSDKNNDGRIDFDEFLKMME 159
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 146 bits (371), Expect = 1e-46
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 21/143 (14%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
D+ QI E+KEAF + D+N G I + + ++ ++G+NPT++ LE ++ E G +
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP----GPI 56
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
+F FL + + D + AF FD++ G++ +D+EVDE
Sbjct: 57 NFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDE 116
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
+ A + G+ Y EF +++
Sbjct: 117 MYREAPIDKKGNFNYVEFTRILK 139
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 155 bits (392), Expect = 1e-46
Identities = 73/143 (51%), Positives = 97/143 (67%), Gaps = 17/143 (11%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EEQI E+KEAF+LFDK+G G I +K +GTVMR++G+NPTE EL+D++ EVD D G++
Sbjct: 306 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 365
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
DF FL +MA + + DS E+ EAF+VFDKD GEKL+D+EVDE
Sbjct: 366 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 425
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
+I AD + G V YEEF ++MT
Sbjct: 426 MIREADIDGDGQVNYEEFVQMMT 448
Score = 67.2 bits (164), Expect = 2e-14
Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 41/151 (27%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKE-VDPDDVGS 62
+ + +F K+ T E++ V+ ++
Sbjct: 241 FKSAMPEGYIQERTIFFKDDGN----------------YKTRAEVKFEGDTLVNRIELKG 284
Query: 63 VDFESFLKLMANHIPNV-------DSTAELLEAFQVFDKD-----------------GEK 98
+DF+ ++ + + + AE EAF +FDKD G+
Sbjct: 285 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 344
Query: 99 LSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
++ E+ ++I D + G + + EF +M
Sbjct: 345 PTEAELQDMINEVDADGNGTIDFPEFLTMMA 375
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 145 bits (368), Expect = 5e-46
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 22/148 (14%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L E+I E +EAF FDK+ G I + +G MR +G PTE EL +L ++++ + G V
Sbjct: 5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHV 64
Query: 64 DFESFLKLMANHI----PNVDSTAELLEAFQVFDKD------------------GEKLSD 101
DF+ F++LM + ++ EL +AF+ FD + G ++
Sbjct: 65 DFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGH 124
Query: 102 QEVDELIGLADENNTGHVRYEEFAKVMT 129
++++E+I D N G V +EEF ++M+
Sbjct: 125 RDIEEIIRDVDLNGDGRVDFEEFVRMMS 152
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 142 bits (360), Expect = 7e-45
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 22/147 (14%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS- 62
+ ++KEAF LFD+ G KI + VG + RA+G+NPT E+ +L +++ +
Sbjct: 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAA 61
Query: 63 -VDFESFLKLMANHIPNVD--STAELLEAFQVFDKD-----------------GEKLSDQ 102
+ FE FL ++ N D + + +E +VFDK+ GEK++++
Sbjct: 62 AITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEE 121
Query: 103 EVDELIGLADENNTGHVRYEEFAKVMT 129
EV+EL+ E++ G + YE F K +
Sbjct: 122 EVEELMK-GQEDSNGCINYEAFVKHIM 147
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 143 bits (362), Expect = 1e-44
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
+ Q+ E+KEAF L D++ G I + ++GR TEQEL+ ++ E G +
Sbjct: 51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAP----GPI 106
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD----------------GEKLSDQEVDEL 107
+F FL + + I D ++ AF +FD+ GEK S EVD+
Sbjct: 107 NFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQA 166
Query: 108 IGLADENNTGHVRYEEFAKVMT 129
+ A + G + ++FA+++T
Sbjct: 167 LSEAPIDGNGLIDIKKFAQILT 188
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 141 bits (358), Expect = 2e-44
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
++ L + Q+ E KEAF + D++ G I + + + ++GR P + EL +LKE
Sbjct: 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP---- 62
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQE 103
G ++F +FL L + D L AF +FD+D G+ S +E
Sbjct: 63 GQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEE 122
Query: 104 VDELIGLADENNTGHVRYEEFAKVMT 129
+ + A N Y + +
Sbjct: 123 IKNVWKDAPLKN-KQFNYNKMVDIKG 147
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 140 bits (356), Expect = 3e-44
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFE 66
+ +E F +FDK+ GK+ + +G+ +R++G+NPT EL + +++ D
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAK---EFDLA 58
Query: 67 SFLKLMANHIPN-VDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELI 108
+F + I + + E+L+AF+ DK+ G+ L+ EV+EL+
Sbjct: 59 TFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELM 118
Query: 109 GLADENNTGHVRYEEFAKVMT 129
+ G + YE F ++
Sbjct: 119 KEVSVSGDGAINYESFVDMLV 139
Score = 64.1 bits (157), Expect = 2e-14
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLK 70
E +AF DK G+G I + ++ +G T E+E+L+KEV G++++ESF+
Sbjct: 77 EMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVD 136
Query: 71 LMANHIP 77
++ P
Sbjct: 137 MLVTGYP 143
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 140 bits (356), Expect = 4e-44
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 21/147 (14%)
Query: 4 LDEEQITEWKEAFALFDKNG-SGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
L EEQ E+K AF +F G I +K +G VMR +G+NPT +EL++++ EVD D G+
Sbjct: 12 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGT 71
Query: 63 VDFESFLKLMANHIPNVDSTA---ELLEAFQVFDKD-----------------GEKLSDQ 102
VDF+ FL +M + + EL + F++FDK+ GE +++
Sbjct: 72 VDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITED 131
Query: 103 EVDELIGLADENNTGHVRYEEFAKVMT 129
+++EL+ D+NN G + Y+EF + M
Sbjct: 132 DIEELMKDGDKNNDGRIDYDEFLEFMK 158
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 140 bits (354), Expect = 5e-44
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 22/147 (14%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS- 62
+++Q+ E+KEAF LFD+ G GKI+ G VMRA+G+NPT E+ +L D++ S
Sbjct: 4 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSR 63
Query: 63 -VDFESFLKLMANHI--PNVDSTAELLEAFQVFDKD-----------------GEKLSDQ 102
VDFE+FL ++ + + LE F+VFDK+ GEK++++
Sbjct: 64 RVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEE 123
Query: 103 EVDELIGLADENNTGHVRYEEFAKVMT 129
EV+ ++ E++ G + YE F K +
Sbjct: 124 EVETVLA-GHEDSNGCINYEAFLKHIL 149
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 140 bits (355), Expect = 6e-44
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L ++QI E KEAF++ D + G + + + + +GR P ++EL +LKE G +
Sbjct: 12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP----GPL 67
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
+F FL + ++ + DS + AF +FD+ G+ + E+
Sbjct: 68 NFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRM 127
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
A G Y +F ++
Sbjct: 128 TFKEAPVEG-GKFDYVKFTAMIK 149
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 140 bits (354), Expect = 7e-44
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 22/148 (14%)
Query: 4 LDEEQITEWKEAFALFDK-NGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
L Q+ + AF F+ GSG++ + +G ++ +G T+ + L+ E DP G
Sbjct: 7 LSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGD 66
Query: 63 VDFESFLKLMAN----HIPNVDSTAELLEAFQVFDKD-----------------GEKLSD 101
+DF+SF + A + EL EAF+++DK+ E LS
Sbjct: 67 IDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSS 126
Query: 102 QEVDELIGLADENNTGHVRYEEFAKVMT 129
+++D +I D + +G V +EEF VMT
Sbjct: 127 EDLDAMIDEIDADGSGTVDFEEFMGVMT 154
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 139 bits (353), Expect = 7e-44
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 23/145 (15%)
Query: 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLK-EVDPDDVGSVDFE 66
K+ F LFDK G G I +G +RAIG NPT Q ++D++ + D S+ +
Sbjct: 2 ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Query: 67 SFLKLMANHIPNVDSTA-----ELLEAFQVFDKD-----------------GEKLSDQEV 104
L+ + +D+T + ++AFQVFDK+ GEKL+D EV
Sbjct: 62 QITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEV 121
Query: 105 DELIGLADENNTGHVRYEEFAKVMT 129
DEL+ + ++ G + Y++F + +
Sbjct: 122 DELLKGVEVDSNGEIDYKKFIEDVL 146
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 137 bits (347), Expect = 5e-43
Identities = 25/143 (17%), Positives = 57/143 (39%), Gaps = 23/143 (16%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
EE++ E +K+ GKI R +G P+ + + + + ++
Sbjct: 9 QLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNL 64
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
+E +L+ ++ + + D+ EL++ F FD + G+ L+DQE +
Sbjct: 65 TYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAID 124
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
+ ++ Y+ F + +
Sbjct: 125 ALNAFSSE--DNIDYKLFCEDIL 145
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 137 bits (347), Expect = 7e-43
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 4 LDEEQITEWKEAFALFD--KNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVG 61
L +++I + K+ F LFD G + + +G V R +G NP +++ +
Sbjct: 3 LSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVG-GTHKMGEK 61
Query: 62 SVDFESFLKLMANHI-PNVDSTAELLEAFQVFDKD-----------------GEKLSDQE 103
S+ FE FL + + A+ +EAF+ FD++ GE+LSD++
Sbjct: 62 SLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDED 121
Query: 104 VDELIGLAD--ENNTGHVRYEEFAKVMT 129
VDE+I L D E+ G+V+YE+F K +
Sbjct: 122 VDEIIKLTDLQEDLEGNVKYEDFVKKVM 149
Score = 61.8 bits (151), Expect = 3e-13
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD--PD 58
+ ++ ++ EAF FD+ G G I + V+ A+G +++++++++K D D
Sbjct: 75 LMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQED 134
Query: 59 DVGSVDFESFLKLM 72
G+V +E F+K +
Sbjct: 135 LEGNVKYEDFVKKV 148
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 136 bits (344), Expect = 2e-42
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 24/149 (16%)
Query: 4 LDEEQITEWKEAFALFD--KNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVG 61
L +++I E +E F LFD G + + VG ++R +G NPTE ++
Sbjct: 3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEK 61
Query: 62 SVDFESFLKLMANH--IPNVDSTAELLEAFQVFDKD-----------------GEKLSDQ 102
+ E L + + E +EAF+ FD++ GE++++
Sbjct: 62 AYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITED 121
Query: 103 EVDELIGLAD--ENNTGHVRYEEFAKVMT 129
+ +++ D E+ G+++YE+ K +
Sbjct: 122 QCNDIFTFCDIREDIDGNIKYEDLMKKVM 150
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 136 bits (345), Expect = 2e-42
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGR-NPTEQELEDLLKEVDPDDVGS 62
DE +I ++KEAF + D+N G I + A+GR N +EL+ ++KE G
Sbjct: 19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEAS----GP 74
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVD 105
++F FL + + D ++ AF+V D D G + + +E+
Sbjct: 75 INFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIK 134
Query: 106 ELIGLADENNTGHVRYEEFAKVMT 129
+ + G+V Y+ V+T
Sbjct: 135 NMWAAFPPDVAGNVDYKNICYVIT 158
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 133 bits (337), Expect = 6e-41
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EE+I KE F + D + SG I + ++ +G E E++DL+ D D G++
Sbjct: 4 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 63
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDG---------------EKLSDQEVDELI 108
D+ F+ H+ ++ L+ AF FDKDG L D +D++I
Sbjct: 64 DYGEFIAATV-HLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMI 122
Query: 109 GLADENNTGHVRYEEFAKVMT 129
D++N G + Y EFA +M
Sbjct: 123 KEIDQDNDGQIDYGEFAAMMR 143
Score = 71.1 bits (175), Expect = 1e-16
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
EE + AF+ FDK+GSG I + + G + ++D++KE+D D+
Sbjct: 76 NKLEREENL---VSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDND 130
Query: 61 GSVDFESFLKLMANHIPNVDS-------TAELLEAFQVFDKDG 96
G +D+ F +M N T L +A + D
Sbjct: 131 GQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGS 173
Score = 26.8 bits (60), Expect = 1.8
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 11 EWKEAFALFDKNGSGKI 27
++A L D + I
Sbjct: 161 NLRDALGLVDNGSNQVI 177
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 131 bits (332), Expect = 1e-40
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 24/142 (16%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFE 66
+ +K+AF+LFD++G+G+I +G ++RA G+NPT E + E++ VD E
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDME 57
Query: 67 SFLKLMANHIPN--VDSTAELLEAFQVFDKD-----------------GEKLSDQEVDEL 107
FL+++ E ++ FQVFDKD GEKLS++E+DEL
Sbjct: 58 QFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDEL 117
Query: 108 IGLADENNTGHVRYEEFAKVMT 129
+ + G V Y +F +++
Sbjct: 118 LKGVPVKD-GMVNYHDFVQMIL 138
Score = 65.2 bits (160), Expect = 9e-15
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
E+ + F +FDK+ +G I + V+ ++G + +E+++LLK V D G V+
Sbjct: 71 MPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKD-GMVN 129
Query: 65 FESFLKLM 72
+ F++++
Sbjct: 130 YHDFVQMI 137
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 129 bits (327), Expect = 1e-39
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 16/142 (11%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+L EE+I KE F + D + SG+I + + ++ +G N E E+ DL++ D D+ G+
Sbjct: 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGT 79
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE---------------KLSDQEVDEL 107
+D++ F+ H+ ++ L AF FDKDG + D ++EL
Sbjct: 80 IDYKEFIAATL-HLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEEL 138
Query: 108 IGLADENNTGHVRYEEFAKVMT 129
+ D++N G + Y EF +M
Sbjct: 139 MRDVDQDNDGRIDYNEFVAMMQ 160
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 128 bits (324), Expect = 8e-39
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L + +I + F D + SG + S+ + ++ IG ++ +L+++D + G +
Sbjct: 51 LCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQI 110
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-------------------GEKLSDQEV 104
+ FL + L F+ FD D L D+ +
Sbjct: 111 HYTDFLAATIDKQ-TYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAI 169
Query: 105 DELIGLADENNTGHVRYEEFAKVMT 129
D L+ D N G + + EF +M+
Sbjct: 170 DSLLQEVDLNGDGEIDFHEFMLMMS 194
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 124 bits (313), Expect = 6e-38
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLM 72
+ F D NG G + + V + EQ L+ + K +D D G +D F K
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 73 A--NHIPNVDSTAELLEAFQVFDKDG-------------EKLSDQEVDELIGLADENNTG 117
D L +++ D DG +K ++V E + AD N G
Sbjct: 63 GSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDG 122
Query: 118 HVRYEEFAKVM 128
++ EEF +
Sbjct: 123 YITLEEFLEFS 133
Score = 54.5 bits (132), Expect = 8e-11
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
L+ D+ + K + L D +G GK+ + V + + G +++ + + + D +
Sbjct: 69 DLSDDKIGL---KVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGD 121
Query: 61 GSVDFESFLKLM 72
G + E FL+
Sbjct: 122 GYITLEEFLEFS 133
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 122 bits (308), Expect = 2e-36
Identities = 29/164 (17%), Positives = 45/164 (27%), Gaps = 37/164 (22%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKI-----VSKYVGTVMRAIGRNPTEQELEDLLKEVDP 57
+ I K F D NG+GKI VSK + + P + + + E
Sbjct: 13 FDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 58 DDVG-----SVDFESFLKLMANHIP----------NVDSTAELLEAFQVFDKD------- 95
G + F FL F +FDKD
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 96 ----------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
G S ++ + D +N G + +E +
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHL 176
Score = 65.5 bits (160), Expect = 2e-14
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 5 DEEQITEW-KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
+ I EW F +FDK+GSG I + G +P++++ E + D D+ G +
Sbjct: 107 EPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDL 166
Query: 64 DFESFLKLMANHIPNVDSTAE 84
D + + +D A+
Sbjct: 167 DVDEMTRQHLGFWYTLDPEAD 187
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 117 bits (296), Expect = 1e-34
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKI-----------VSKYVGTVMRAIGRNPTEQELEDLL 52
E+ E + F D NG G++ + ++ G + + + E E++ +L
Sbjct: 34 TTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHIL 93
Query: 53 KEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG---------------E 97
+ VD D G +++ F+ + + S LL AFQ FD DG
Sbjct: 94 QSVDFDRNGYIEYSEFVTVCM-DKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVT 152
Query: 98 KLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
++ D+ +++ D+NN G V +EEF ++M
Sbjct: 153 EVDDETWHQVLQECDKNNDGEVDFEEFVEMMQ 184
Score = 54.2 bits (131), Expect = 3e-10
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
+L L E++ AF FD +GSGKI ++ +G + ++ +L+E D ++
Sbjct: 117 QLLLSRERL---LAAFQQFDSDGSGKITNEELGRLFG--VTEVDDETWHQVLQECDKNND 171
Query: 61 GSVDFESFLKLMAN 74
G VDFE F+++M
Sbjct: 172 GEVDFEEFVEMMQK 185
Score = 48.8 bits (117), Expect = 3e-08
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 28/90 (31%)
Query: 68 FLKLMANHIPNVDSTAELLEAFQVFDKD----------------------------GEKL 99
+ M + + ++ T EL + F+ D +
Sbjct: 25 AMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQ 84
Query: 100 SDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ EVD ++ D + G++ Y EF V
Sbjct: 85 IEAEVDHILQSVDFDRNGYIEYSEFVTVCM 114
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 115 bits (290), Expect = 1e-33
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 24/143 (16%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
E E F D +GSG I + + + G + E LL D + G +
Sbjct: 21 RHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEI 80
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
F+ F L + + E F+ D G ++S+Q
Sbjct: 81 TFDEFKDLHHFIL-------SMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQA 133
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
L+ D G + ++++ ++
Sbjct: 134 LMRKFDRQRRGSLGFDDYVELSI 156
Score = 80.8 bits (200), Expect = 2e-20
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESF 68
I +E F D +G G++ S V + + G +EQ + L+++ D GS+ F+ +
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDY 151
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKDG 96
++L + F +D++
Sbjct: 152 VELSI-------FVCRVRNVFAFYDRER 172
Score = 48.1 bits (115), Expect = 6e-08
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 67 SFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELIG 109
+ + A +++ EL+E F+ D D G S ++L+
Sbjct: 11 TSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLH 70
Query: 110 LADENNTGHVRYEEFAKVMT 129
+ D+N++G + ++EF +
Sbjct: 71 MYDKNHSGEITFDEFKDLHH 90
Score = 29.6 bits (67), Expect = 0.24
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 8 QITEWKEAFALFDKNGSGKI 27
+ + FA +D+ +G++
Sbjct: 157 FVCRVRNVFAFYDRERTGQV 176
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 113 bits (284), Expect = 6e-33
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 25/150 (16%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
++ + + K F + D++G G I + + + G + LL ++D D G
Sbjct: 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDG-LKLPYNFDLLLDQIDSDGSGK 103
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG----------------------EKLS 100
+D+ F+ + S + AF+VFD D +
Sbjct: 104 IDYTEFIAAALDR--KQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRD 161
Query: 101 DQEVDELIGLADENNTGHVRYEEFAKVMTL 130
V +I D+NN G + + EF+++M L
Sbjct: 162 VNRVKRMIRDVDKNNDGKIDFHEFSEMMKL 191
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 112 bits (281), Expect = 3e-32
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVG 61
L+ I F D++GS + + + +G + E E + ++ D + G
Sbjct: 29 LSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSG 88
Query: 62 SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD------------------------GE 97
++D E FL+ + + A + AF D+ GE
Sbjct: 89 TLDLEEFLRALR-PPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGE 147
Query: 98 KLSDQEVDELIGLADEN-NTGHVRYEEFAKVMT 129
D+ + + D + G V EF +
Sbjct: 148 WTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYS 180
Score = 53.9 bits (130), Expect = 4e-10
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKI-------VSKYVGTVMRAIGRNPTEQELEDLLKEVD 56
+ + + AFA D++G G + V G ++ L L D
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFD 162
Query: 57 PDDV-GSVDFESFLKLMANHIPNVDSTAE----LLEAFQV 91
+ G V F + ++++ E + A+Q+
Sbjct: 163 SSEKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL 202
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 109 bits (275), Expect = 7e-32
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
D ++I + F D + SG + + + + + +NP ++ ++ D D G VD
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNP---LVQRVIDIFDTDGNGEVD 56
Query: 65 FESFLKLMANHIPNVDSTAELLEAFQVFDKD------------------GEKLSDQE--- 103
F+ F++ ++ D +L AF+++D D G L D +
Sbjct: 57 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQ 116
Query: 104 -VDELIGLADENNTGHVRYEEFAKVMT 129
VD+ I AD++ G + +EEF V+
Sbjct: 117 IVDKTIINADKDGDGRISFEEFCAVVG 143
Score = 47.2 bits (113), Expect = 8e-08
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRA-IGRNPTEQELEDL----LKEVDPDDVGSVDFES 67
+ AF ++D + G I + + V++ +G N + +L+ + + D D G + FE
Sbjct: 78 RFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEE 137
Query: 68 FLKLMAN 74
F ++
Sbjct: 138 FCAVVGG 144
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 104 bits (262), Expect = 1e-29
Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 37/163 (22%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKI-----VSKYVGTVMRAIGRNPTEQELEDLLKEVDPD 58
+ I K F D N +GKI V K V+ +G P + + E
Sbjct: 10 DNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFG 69
Query: 59 DVG-----SVDFESFLKLMANHIPNVDST----------AELLEAFQVFDKD-------- 95
G D+ ++++ + F + DKD
Sbjct: 70 GAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLD 129
Query: 96 ---------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
G S ++ +E + D + +G + +E +
Sbjct: 130 EWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL 172
Score = 61.4 bits (149), Expect = 7e-13
Identities = 14/80 (17%), Positives = 28/80 (35%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
F + DK+ +G I +A G + ++ E+ + D D+ G +D
Sbjct: 104 PTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLD 163
Query: 65 FESFLKLMANHIPNVDSTAE 84
+ + +D E
Sbjct: 164 VDEMTRQHLGFWYTMDPACE 183
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 103 bits (260), Expect = 2e-29
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 27/151 (17%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
+L++ I E F D N +G + + + TV+ ++G + ++ +L+ +D +D
Sbjct: 30 ELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGI--KKWDINRILQALDINDR 87
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG---------------EKLSDQEVD 105
G++ + F+ + L AF DKD + L + ++D
Sbjct: 88 GNITYTEFMAGCYRW--KNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDID 145
Query: 106 ELIGLADENNTGHVR--------YEEFAKVM 128
G R ++EF M
Sbjct: 146 NFFLSVHSIKKGIPREHIINKISFQEFKDYM 176
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 99.3 bits (248), Expect = 1e-28
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
K L E+ E+KEAF LFDK+ K+ ++ +GTVMRA+G NPT+Q++ +++K+ D D+
Sbjct: 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNS 64
Query: 61 GSVDFESFLKLMANHIPNVDS 81
G D E+FL +M + VDS
Sbjct: 65 GKFDQETFLTIMLEYGQEVDS 85
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 103 bits (258), Expect = 2e-28
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 39/165 (23%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTE------QELEDLLKEVDP 57
+++ E + FD +GSG + K + +++ + + + E++ + +
Sbjct: 10 SSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQ 69
Query: 58 DDVGSVDFESFLKLMAN--------HIPNVDSTAELLEAFQVFDKDG------------- 96
D G + ++ + S E ++ ++ +D D
Sbjct: 70 RDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFL 129
Query: 97 ------------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ + D ++ L D NN G + E A+++
Sbjct: 130 KDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLP 174
Score = 77.6 bits (191), Expect = 1e-18
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 37/162 (22%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPT--------EQELEDLLKEVD 56
+ E+ + + +D + SG I ++ + ++ + + + +LK D
Sbjct: 98 QLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFD 157
Query: 57 PDDVGSVDFESFLKLMANHIPNV-------DSTAELLEAFQVFDKD-------------- 95
++ G ++ +L+ + E +AF+++D+D
Sbjct: 158 SNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALL 217
Query: 96 ---GEKLSDQEVDELI-----GLADENNTGHVRYEEFAKVMT 129
EK + I + ++ G + + A +++
Sbjct: 218 KDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALILS 259
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 102 bits (257), Expect = 9e-28
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 23/141 (16%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EE ++ F +GSGK + + V+ E L+ L V+ D G +
Sbjct: 116 LSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRM 175
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDG----------------EKLSDQEVDEL 107
+ + + + + A L+ F+ D + D L
Sbjct: 176 SYITLVAVA-------NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDAL 228
Query: 108 IGLADENNTGHVRYEEFAKVM 128
ADE+ + V + E+ +
Sbjct: 229 FRYADEDESDDVGFSEYVHLG 249
Score = 87.6 bits (217), Expect = 6e-22
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 26/140 (18%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFE 66
+ F D N +G + K +G + + + L + D D+ V F
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDDVGFS 243
Query: 67 SFLKLMANHIPNVDSTAELLEAFQVFDKDG------------------EKLSDQEVDELI 108
++ L L + D D + + ++ +
Sbjct: 244 EYVHLGL-------CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQF 296
Query: 109 GLADENNTGHVRYEEFAKVM 128
+ D +++ + Y+EF ++
Sbjct: 297 SVVDVDDSKSLSYQEFVMLV 316
Score = 66.4 bits (162), Expect = 3e-14
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 25/143 (17%)
Query: 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRN---PTEQELEDLLKEVDPDDVGS 62
++ E K A +D+ + ++ R R +Q L LLK+++ D G
Sbjct: 47 AQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGY 106
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVD 105
++ + + T L + F + + + +
Sbjct: 107 NRLRPSKPML-----SEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLK 161
Query: 106 ELIGLADENNTGHVRYEEFAKVM 128
+L + + + G + Y V
Sbjct: 162 KLFVMVENDTKGRMSYITLVAVA 184
Score = 56.0 bits (135), Expect = 2e-10
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIG-RNPTEQELEDLLKEVDPDDVGSVDFE 66
+ + +A D + SG++ + V V+ ++ E VD DD S+ ++
Sbjct: 251 CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ 310
Query: 67 SFLKLMAN 74
F+ L+
Sbjct: 311 EFVMLVLL 318
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 93.8 bits (234), Expect = 1e-26
Identities = 36/73 (49%), Positives = 53/73 (72%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EE I E+K AF +FD +G G I +K +GTVMR +G+NPT++EL+ +++EVD D G++
Sbjct: 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTI 73
Query: 64 DFESFLKLMANHI 76
DFE FL +M +
Sbjct: 74 DFEEFLVMMVRQM 86
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 95.8 bits (239), Expect = 2e-26
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 25/141 (17%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP-TEQELEDLLKEVDPDDVGSVDF 65
+ F DK+ SG I + + P + ++ D ++ V+F
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 63
Query: 66 ESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELI 108
F + +I + F+ +D+D G +LSDQ D LI
Sbjct: 64 SEFTGVW-KYI------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILI 116
Query: 109 GLADENNTGHVRYEEFAKVMT 129
D G + +++F +
Sbjct: 117 RKFDRQGRGQIAFDDFIQGCI 137
Score = 75.0 bits (185), Expect = 3e-18
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESF 68
IT+W+ F +D++ SG I + + G ++Q + L+++ D G + F+ F
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKDG 96
++ L + F+ +D D
Sbjct: 133 IQGCI-------VLQRLTDIFRRYDTDQ 153
Score = 24.9 bits (55), Expect = 9.4
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 8 QITEWKEAFALFDKNGSGKI 27
+ + F +D + G I
Sbjct: 138 VLQRLTDIFRRYDTDQDGWI 157
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 92.9 bits (232), Expect = 2e-26
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L EEQ E KEAF LFD N +G I + MRA+G + + E+ +L+ E D + G +
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYI 60
Query: 64 DFESFLKLMANHIPNVD 80
F+ FL +M I N D
Sbjct: 61 GFDDFLDIMTEKIKNRD 77
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 96.0 bits (239), Expect = 5e-26
Identities = 18/160 (11%), Positives = 39/160 (24%), Gaps = 34/160 (21%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRN---------PTEQELEDLLKE 54
L + ++ + F FD + GK+ V + + +
Sbjct: 30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLH 89
Query: 55 VDPDDVGSVDFESFLKLMANHIPNVDSTAELLE----------AFQVFDKDG-------- 96
+ V + E +++ E + V D DG
Sbjct: 90 KGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDE 149
Query: 97 -------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ + AD + +G + E +
Sbjct: 150 LKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFR 189
Score = 48.7 bits (116), Expect = 4e-08
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
+ + D +G G + + T+M+A ++ ++ D D G ++
Sbjct: 123 PSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLE 180
Query: 65 FESFLKLMANH 75
+ L
Sbjct: 181 RTELVHLFRKF 191
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 95.2 bits (237), Expect = 8e-26
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 42/164 (25%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
+ + F D+N G + + + A+ NP +++ PD V
Sbjct: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGDR---IIESFFPDGSQRV 78
Query: 64 DFESFLKLMANHIPNVDSTA----------------ELLEAFQVFDKD------------ 95
DF F++++A+ P D +L AFQ++D D
Sbjct: 79 DFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQ 138
Query: 96 ------GEKLSDQE----VDELIGLADENNTGHVRYEEFAKVMT 129
G ++++++ D + ADE+ G V + EF K +
Sbjct: 139 VLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182
Score = 50.1 bits (120), Expect = 1e-08
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDL----LKEVDPDDVGSVDFES 67
AF L+D + GKI + V+R + G TE++LE++ ++E D D G+V F
Sbjct: 117 HYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVE 176
Query: 68 FLKLMANH 75
F K +
Sbjct: 177 FTKSLEKM 184
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 92.9 bits (231), Expect = 5e-25
Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 32/159 (20%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGR---------NPTEQELEDLLK 53
+ + + K D G G I + + I + T QE +
Sbjct: 7 SERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVAD 66
Query: 54 EVDPDDVGSVDFESFLKLMANHIPNVDSTAELLE------AFQVFDKD------------ 95
++ + E + + + + + + D D
Sbjct: 67 QLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKA 126
Query: 96 -----GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
G L+D + D N G + +EF +
Sbjct: 127 FLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVN 165
Score = 61.3 bits (149), Expect = 6e-13
Identities = 11/79 (13%), Positives = 31/79 (39%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
+ + + D + G + ++A+G + T+ + +D + G +
Sbjct: 97 KAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQIS 156
Query: 65 FESFLKLMANHIPNVDSTA 83
+ FL + + + ++ TA
Sbjct: 157 RDEFLVTVNDFLFGLEETA 175
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 90.6 bits (225), Expect = 2e-24
Identities = 24/159 (15%), Positives = 39/159 (24%), Gaps = 36/159 (22%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIG---------------RNPTEQELEDL 51
E F FD++G+G I +A+ E + L
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 52 LKEVDPDDVGSVDFESFLKLMANHIPNVDS------TAELLEAFQVFDKDGE-------- 97
D D + E F+ + + L A V D DG+
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 98 -------KLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ + + D + G V E
Sbjct: 121 ARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
Score = 52.4 bits (126), Expect = 1e-09
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
E A + D +G G + + A G E +D D G V
Sbjct: 93 AEMARPFLHAALGVADTDGDGAVTVADTARALTAFGV--PEDLARQAAAALDTDGDGKVG 150
Query: 65 FESFLKLMANH 75
+ A +
Sbjct: 151 ETEIVPAFARY 161
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 91.5 bits (227), Expect = 4e-24
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 29/154 (18%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGT-VMRAIGRNPTEQELEDLLK--------- 53
E E F FDKN +GK+ V + + + + + D+ K
Sbjct: 42 KTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTL 101
Query: 54 EVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG----------------- 96
++ GS DF FL+ + + EL F D G
Sbjct: 102 GSKLENKGSEDFVEFLEFRL-MLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLE 160
Query: 97 -EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
++ L D+N TG V ++EFA +
Sbjct: 161 AWGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS 194
Score = 51.0 bits (122), Expect = 6e-09
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIG-RNPTEQELEDLLKEVDPDD 59
D ++ F D +G+ + + + + ++ L KE+D +
Sbjct: 124 CYIYDFFEL---TVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNG 180
Query: 60 VGSVDFESFLKLMANHIPNVDSTAELLE 87
GSV F+ F + + D + +
Sbjct: 181 TGSVTFDEFAAWASAVKLDADGDPDNVP 208
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 88.0 bits (218), Expect = 2e-23
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
E++T +KE + FD N G+I + +M +G T E++ ++ EV ++
Sbjct: 44 NLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTI 103
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK 98
+ F+ +M + +L+ +F+ +
Sbjct: 104 SYRDFVNMMLG------KRSAVLKLVMMFEGKANE 132
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 85.8 bits (213), Expect = 2e-23
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ I + + F FD NG GKI S +G ++ +G + T E+ ++ E+D D G
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGF 62
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAF 89
+ F+ F N ++ + F
Sbjct: 63 ISFDEFTDFARA---NRGLVKDVSKIF 86
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 87.1 bits (216), Expect = 6e-23
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 37/160 (23%)
Query: 6 EEQITEWKEAFALFDKNGSGKI----VSKYVGTVMRAIGRNPTEQELEDL---------- 51
K+ F +D +G+G + K + A G++ E++ L
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDY 62
Query: 52 -LKEVDPDDVGSVDFESFLKLMANHIPNVDS-------TAELLEAFQVFDKDGE------ 97
KE GS+ E F+++ N I + + DK+ +
Sbjct: 63 LAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
Query: 98 ---------KLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+S E E D N G + +E +
Sbjct: 123 EFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 51.7 bits (124), Expect = 2e-09
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
+ K + DKN G+I + + A+G ++ E + +VD + G +
Sbjct: 96 FNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGM--SKAEAAEAFNQVDTNGNGEL 153
Query: 64 DFESFLKLMA 73
+ L +
Sbjct: 154 SLDELLTAVR 163
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 85.1 bits (211), Expect = 7e-23
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
++ +KE + FD NG+G I + ++ +G T EL+ L+ EV +
Sbjct: 26 DLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETF 85
Query: 64 DFESFLKLMA 73
+ FL++M
Sbjct: 86 SYPDFLRMML 95
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 83.7 bits (208), Expect = 1e-22
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
L EE+I KE F + D + SG I + ++ +G E E++DL+ D D G+
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 75
Query: 63 VDFESFLKLMAN 74
+D+ F+ +
Sbjct: 76 IDYGEFIAATVH 87
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 83.9 bits (208), Expect = 4e-22
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------- 96
E + +L E +E L +MA + + +EL + F +
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAES 61
Query: 97 ----------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
E +S ++ ++ D + G + EF +M
Sbjct: 62 LRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMV 104
Score = 57.7 bits (140), Expect = 5e-12
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGR-NPTEQELEDLLKEVDPDDVGSV 63
EE ++E + F+L I ++ + +G ++++ + +++E D D G++
Sbjct: 35 VEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGAL 94
Query: 64 DFESFLKLMANHIPNV--DSTAELLEAFQVFDKDG 96
+ F LM P + D+ L +A +
Sbjct: 95 NQTEFCVLMVRLSPEMMEDAETWLEKALTQELCNH 129
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 85.9 bits (212), Expect = 2e-21
Identities = 21/173 (12%), Positives = 57/173 (32%), Gaps = 45/173 (26%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIG--RNPTEQELEDLLKEV----- 55
+ + + FD + +G I K + R + P ++ ++ ++++
Sbjct: 4 AFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFM 63
Query: 56 ---DPDDVGSVDFESFLKLMAN----------HIPNVDSTAELLEAFQVFDKDG------ 96
D G + E ++ +D++ E ++ ++ +D D
Sbjct: 64 SAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISA 123
Query: 97 -------------------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
D+ D ++ + D+N G + + A+++ L
Sbjct: 124 AELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILAL 176
Score = 65.9 bits (160), Expect = 4e-14
Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 44/170 (25%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMR--------AIGRNPTEQELEDLLKEVD 56
+ E+ + + +D + SG I + + ++ I N ++ + ++K D
Sbjct: 99 PLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFD 158
Query: 57 PDDVGSVDFESFLKLMAN-----------HIPNVDSTAELLEAFQVFDKDG--------- 96
+ G +D +++A V+ + + F +D
Sbjct: 159 KNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEV 218
Query: 97 ------------EKLSDQEVDE----LIGLADENNTGHVRYEEFAKVMTL 130
+S ++D+ L+ D N G ++ E A + L
Sbjct: 219 DGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGL 268
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 81.7 bits (202), Expect = 8e-21
Identities = 24/153 (15%), Positives = 42/153 (27%), Gaps = 30/153 (19%)
Query: 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTE-----QELEDLLKEV----- 55
+ + + K F D + G I ++ + + L D L V
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFL 61
Query: 56 -DPDDVGSVDFESFLKLMANHIPNVDS----TAELLEAFQVFDKDGE------------- 97
+D +F+ M + N ++ L F+ D + +
Sbjct: 62 TAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121
Query: 98 --KLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
L D NN G + EEF
Sbjct: 122 MLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
Score = 50.9 bits (122), Expect = 4e-09
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
F D N I G +G + +D ++ G +
Sbjct: 89 KSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGL--DKTMAPASFDAIDTNNDGLLS 146
Query: 65 FESFLKLMANH 75
E F+ ++
Sbjct: 147 LEEFVIAGSDF 157
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 81.7 bits (202), Expect = 2e-20
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 41/162 (25%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
QIT F DK +G + + + + NP ++ + V
Sbjct: 23 FSHSQITRLYSRFTSLDKGENGTLSREDFQR-IPELAINPLGDR---IINAFFSEGEDQV 78
Query: 64 DFESFLKLMANHIPNVDSTAE---------------LLEAFQVFDKD------------- 95
+F F++ +A+ P D+ L AF+++D D
Sbjct: 79 NFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQV 138
Query: 96 -----GEKLSDQE----VDELIGLADENNTGHVRYEEFAKVM 128
G +SD++ D I AD++ + + EF KV+
Sbjct: 139 LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Score = 46.3 bits (110), Expect = 3e-07
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI-GRNPTEQELEDL----LKEVDPDDVGSVDFES 67
AF L+D + KI + V+R + G N ++++L + ++E D D ++ F
Sbjct: 116 HFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTE 175
Query: 68 FLKLMANH 75
F+K++
Sbjct: 176 FVKVLEKV 183
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 81.4 bits (201), Expect = 2e-20
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 25/139 (17%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
T+ +Q T + F D++ SG + + G + Q +++ D D G
Sbjct: 44 TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGH 103
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVD 105
+ F F+ + F + + G ++ +
Sbjct: 104 ISFYEFMAMYKFM-------ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSL 156
Query: 106 ELIGLADENNTGHVRYEEF 124
L +
Sbjct: 157 LLH-RLFARGMAFCDLNCW 174
Score = 54.4 bits (131), Expect = 4e-10
Identities = 14/121 (11%), Positives = 38/121 (31%), Gaps = 20/121 (16%)
Query: 9 ITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESF 68
+ F + + SG + + ++ +G ++ LL + + D +
Sbjct: 116 MELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQR-TSLLLHRLFARGMAFCDLNCW 174
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + A A+ A+Q+ + + + + +F V+
Sbjct: 175 IAICA-------FAAQTRSAYQMIFMNP---YYGPMKPFN---------PMEFGKFLDVV 215
Query: 129 T 129
T
Sbjct: 216 T 216
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 78.0 bits (193), Expect = 2e-20
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
+D + E KEAF +FDK+ +G I + + VM +G T++E+E ++KE D D G V
Sbjct: 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQV 62
Query: 64 DFESFLKLM--ANHIPNVDSTAELLEAF 89
++E F+K+M + + L F
Sbjct: 63 NYEEFVKMMMTVRGGGGGNGWSRLRRKF 90
Score = 60.3 bits (147), Expect = 2e-13
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 17/69 (24%)
Query: 78 NVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVR 120
+ D+ EL EAF+VFDKD GEKL+D+EV+++I AD + G V
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63
Query: 121 YEEFAKVMT 129
YEEF K+M
Sbjct: 64 YEEFVKMMM 72
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 79.9 bits (197), Expect = 5e-20
Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 39/165 (23%)
Query: 4 LDEEQITEWKEAF-ALFDKNGSGKI-------VSKYVGTVMRAIGRNPTEQEL------- 48
L + Q + F +D N G I K + + E
Sbjct: 6 LSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLI 65
Query: 49 -EDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEA--------FQVFDKDGE-- 97
+ L K D ++ V E +LK+ A + +V+ L E F V D G+
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNI 125
Query: 98 -------------KLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ + D + V E FA++ T
Sbjct: 126 IDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
Score = 49.8 bits (119), Expect = 1e-08
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L E F + D +G I TV + G + + + + V
Sbjct: 103 LPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGI--PKSDCDAAFDTLSDGGKTMV 160
Query: 64 DFESFLKLMANHIPNVDSTA 83
E F +L + + D A
Sbjct: 161 TREIFARLWTEYFVSNDRGA 180
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 76.8 bits (190), Expect = 1e-19
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 25/112 (22%)
Query: 38 AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-- 95
A +++ L V + GS + + F L+ S ++ + F+ D D
Sbjct: 2 AAKDLLKADDIKKALDAVKAE--GSFNHKKFFALVGL---KAMSANDVKKVFKAIDADAS 56
Query: 96 ------------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
G L+D E + AD++ G + +EF ++
Sbjct: 57 GFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 108
Score = 56.8 bits (138), Expect = 7e-12
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 11 EWKEAFALFDKNGSGKIVS---KYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFES 67
+ K+ F D + SG I K+V A GR+ T+ E + LK D D G + +
Sbjct: 43 DVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDE 102
Query: 68 FLKLMAN 74
F L+
Sbjct: 103 FETLVHE 109
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 81.7 bits (202), Expect = 2e-19
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKI--------VSKYVGTVMRAIGRNPTEQELEDLLKEV 55
+E+ E + F DKNG G++ SK G + E E++ +L
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG---------------EKLS 100
D D G +D+ F+ +A ++ S +L AFQ FD+DG + L
Sbjct: 400 DFDRNGYIDYSEFV-TVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLE 458
Query: 101 DQEVDELIGLADENNTGHVRYEEFAKVM 128
+ E+I D NN G V +EEF K++
Sbjct: 459 SKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Score = 43.5 bits (103), Expect = 5e-06
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 25/81 (30%)
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKDG-------------------------EKLSDQE 103
L MA+ + + + T EL + F+ DK+G + E
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391
Query: 104 VDELIGLADENNTGHVRYEEF 124
VD ++G AD + G++ Y EF
Sbjct: 392 VDAILGAADFDRNGYIDYSEF 412
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 80.9 bits (200), Expect = 4e-19
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKI-----------VSKYVGTVMRAIGRNPTEQELEDLL 52
+++ E F DKNG G++ + + G + + E E++ +L
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 53 KEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG---------------E 97
VD D G +++ F+ +A + S L AF++FD D
Sbjct: 389 DAVDFDKNGYIEYSEFV-TVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVS 447
Query: 98 KLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + ++ D+NN G V ++EF +++
Sbjct: 448 DVDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
Score = 49.7 bits (119), Expect = 3e-08
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 3 TLDEEQI---TEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDD 59
+D + + + AF +FD + SGKI S + T+ + + + +L EVD ++
Sbjct: 408 AMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVD--SETWKSVLSEVDKNN 465
Query: 60 VGSVDFESFLKLMANHIPN 78
G VDF+ F +++ N
Sbjct: 466 DGEVDFDEFQQMLLKLCGN 484
Score = 42.8 bits (101), Expect = 7e-06
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 28/84 (33%)
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKDG----------------------------EKLS 100
L M + + + D T EL F DK+G
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 101 DQEVDELIGLADENNTGHVRYEEF 124
+ EVD+++ D + G++ Y EF
Sbjct: 381 EHEVDQVLDAVDFDKNGYIEYSEF 404
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 72.5 bits (179), Expect = 2e-18
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 10 TEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFL 69
+ K F FDKN GK+ V A T++++ +E+D D G ++ + F
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60
Query: 70 KLMAN 74
+
Sbjct: 61 SCIEK 65
Score = 52.1 bits (126), Expect = 2e-10
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 17/64 (26%)
Query: 83 AELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFA 125
+ F+ FDK+ + +++ + D + G + +EF
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60
Query: 126 KVMT 129
+
Sbjct: 61 SCIE 64
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 73.8 bits (181), Expect = 4e-18
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
++ +K + FD NG+G I + ++ +G T EL+ L++EV +
Sbjct: 42 DLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETF 101
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK 98
+ FL++M + ++ ++ +K+ ++
Sbjct: 102 SYSDFLRMMLG---KRSAILRMILMYEEKNKEHKR 133
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 72.3 bits (178), Expect = 7e-18
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 25/112 (22%)
Query: 38 AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG- 96
A + ++ LK + S ++++F + S ++ +AF V D+D
Sbjct: 2 AFSGILADADVAAALKACEAA--DSFNYKAFFAKVGLT---AKSADDIKKAFFVIDQDKS 56
Query: 97 -------------------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
L+D E + D + G + +E+A ++
Sbjct: 57 GFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK 108
Score = 56.5 bits (137), Expect = 1e-11
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVS---KYVGTVMRAIGRNPTEQELEDLLKEVDP 57
K+ L + + K+AF + D++ SG I K V A R T+ E + LK D
Sbjct: 33 KVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDS 92
Query: 58 DDVGSVDFESFLKLM 72
D G++ + + L+
Sbjct: 93 DGDGAIGVDEWAALV 107
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 77.0 bits (190), Expect = 8e-18
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 24/148 (16%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKI--------VSKYVGTVMRAIGRNPTEQELEDLLKEV 55
E+ E + F DKNG G++ + E+E++++LKEV
Sbjct: 349 TTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEV 408
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG---------------EKLS 100
D D G +++ F+ + + S L AF +FD D +S
Sbjct: 409 DFDKNGYIEYSEFI-SVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSIS 467
Query: 101 DQEVDELIGLADENNTGHVRYEEFAKVM 128
++ ++++G AD+N + ++EF +M
Sbjct: 468 EKTWNDVLGEADQNKDNMIDFDEFVSMM 495
Score = 48.2 bits (115), Expect = 9e-08
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 3 TLDEEQI---TEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDD 59
+D++ + + AF LFD + SGKI + + + + +E+ D+L E D +
Sbjct: 425 CMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFG--LTSISEKTWNDVLGEADQNK 482
Query: 60 VGSVDFESFLKLMANHIPN 78
+DF+ F+ +M +
Sbjct: 483 DNMIDFDEFVSMMHKICDH 501
Score = 44.3 bits (105), Expect = 2e-06
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 25/81 (30%)
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKDG-------------------------EKLSDQE 103
+ + + + ++ EL + F+ DK+G K ++E
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400
Query: 104 VDELIGLADENNTGHVRYEEF 124
VD ++ D + G++ Y EF
Sbjct: 401 VDNILKEVDFDKNGYIEYSEF 421
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 71.8 bits (177), Expect = 1e-17
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 25/106 (23%)
Query: 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-------- 95
++ + G+ D++ F L+ + A++ E F++ DKD
Sbjct: 7 KADDINKAISAFKDP--GTFDYKRFFHLVGLKG---KTDAQVKEVFEILDKDQSGFIEEE 61
Query: 96 ------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
G L+D E L+ D ++ G + +EFAK++
Sbjct: 62 ELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107
Score = 56.0 bits (136), Expect = 2e-11
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 13 KEAFALFDKNGSGKIVS---KYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFL 69
KE F + DK+ SG I K V A GR+ + E + LL D D G + + F
Sbjct: 44 KEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFA 103
Query: 70 KLMA 73
K++A
Sbjct: 104 KMVA 107
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 69.8 bits (172), Expect = 2e-17
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDF 65
+ + + AF FD++G G I + M +G+ ++EL+ +++E D D G V++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 66 ESFLKLMA 73
E F +++A
Sbjct: 62 EEFARMLA 69
Score = 58.7 bits (143), Expect = 5e-13
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 80 DSTAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYE 122
+L AF+ FD+D G+ L +E+D +I AD + G V YE
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYE 62
Query: 123 EFAKVMT 129
EFA+++
Sbjct: 63 EFARMLA 69
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 75.5 bits (186), Expect = 3e-17
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 32/155 (20%)
Query: 5 DEEQITEWKEAFALFDKNGSGKI--------------VSKYVGTVMRAIGRNPTEQELED 50
++ + E F D N G + + + + E +++
Sbjct: 326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDS 385
Query: 51 LLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------------- 96
L+ +D D GS+++ F+ A + S + AF++FDKDG
Sbjct: 386 LMPLLDMDGSGSIEYSEFI-ASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFS 444
Query: 97 ---EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ +E++ +I D N G V + EF +++
Sbjct: 445 QADSSIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
Score = 57.4 bits (139), Expect = 5e-11
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 3 TLDEEQI---TEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDD 59
+D + + AF +FDK+GSGKI +K + + + +ELE ++++VD +
Sbjct: 407 AIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNK 466
Query: 60 VGSVDFESFLKLMANHIPN 78
G VDF F++++ N + N
Sbjct: 467 DGEVDFNEFVEMLQNFVRN 485
Score = 42.0 bits (99), Expect = 1e-05
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 31/87 (35%)
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKDG-------------------------------E 97
L MA+ + +D T +L E F+ D +
Sbjct: 317 LLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEG 376
Query: 98 KLSDQEVDELIGLADENNTGHVRYEEF 124
+ ++D L+ L D + +G + Y EF
Sbjct: 377 STIEDQIDSLMPLLDMDGSGSIEYSEF 403
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 69.1 bits (170), Expect = 6e-17
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 11 EWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLK 70
+ + F FD NG GKI + +R +G + E++ ++ E+D D G +DF F+
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTDGDGFIDFNEFIS 62
Query: 71 LMANHIPNVDSTAELLEAF 89
N ++ + F
Sbjct: 63 FCNA---NPGLMKDVAKVF 78
Score = 44.9 bits (107), Expect = 1e-07
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 16/62 (25%)
Query: 84 ELLEAFQVFDKDGE----------------KLSDQEVDELIGLADENNTGHVRYEEFAKV 127
++ F+ FD +G+ S EV ++ D + G + + EF
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISF 63
Query: 128 MT 129
Sbjct: 64 CN 65
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 68.7 bits (169), Expect = 8e-17
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP-TEQELEDLLKEVDPDDVGS 62
+ ++ E AF +FD NG G I +M+ +G P T+ E+E+ +KE D D G
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGV 61
Query: 63 VDFESFLKLMANHIPNVDST 82
+D F+ L+ + +
Sbjct: 62 IDIPEFMDLIKKSKNALKES 81
Score = 54.1 bits (131), Expect = 4e-11
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 80 DSTAELLEAFQVFDKDG------------------EKLSDQEVDELIGLADENNTGHVRY 121
D E+L AF+VFD +G E L+D EV+E + ADE+ G +
Sbjct: 5 DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 64
Query: 122 EEFAKVMT 129
EF ++
Sbjct: 65 PEFMDLIK 72
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 68.4 bits (168), Expect = 2e-16
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 25/108 (23%)
Query: 42 NPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG----- 96
+ ++ L S + F + S ++ +AF V D+D
Sbjct: 5 GLKDADVAAALAACSAA--DSFKHKEFFAKVGL---ASKSLDDVKKAFYVIDQDKSGFIE 59
Query: 97 ---------------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
L+D E + D++ G + +EFA ++
Sbjct: 60 EDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107
Score = 55.6 bits (135), Expect = 2e-11
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 13 KEAFALFDKNGSGKIVS---KYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFL 69
K+AF + D++ SG I K R T+ E + L + D D G + + F
Sbjct: 44 KKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFA 103
Query: 70 KLM 72
++
Sbjct: 104 AMI 106
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 68.1 bits (167), Expect = 2e-16
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
D + E +EAF + DK+G+G I + + VM +G T++E++++++E D D G V+
Sbjct: 24 DTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 83
Query: 65 FESFLKLMA 73
+E F+++M
Sbjct: 84 YEEFVQMMT 92
Score = 66.9 bits (164), Expect = 6e-16
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 18/83 (21%)
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDE 106
L + + + DS E+ EAF+V DKD GEKL+D+EVDE
Sbjct: 11 SSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 69
Query: 107 LIGLADENNTGHVRYEEFAKVMT 129
+I AD + G V YEEF ++MT
Sbjct: 70 MIREADIDGDGQVNYEEFVQMMT 92
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 70.2 bits (172), Expect = 4e-16
Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 36/158 (22%)
Query: 6 EEQITEWKEAFALF-DKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD 64
+ +E + F ++ SG + + Q +E + + D + ++D
Sbjct: 18 AADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTID 77
Query: 65 FESFLKLMANHIPNVDSTAELLEAFQVFDKDG---------------------------- 96
F ++ + + +L F+++DKD
Sbjct: 78 FLEYVAALNLVLRG-TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVE 136
Query: 97 ------EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
++ VD + L DEN G + EF +
Sbjct: 137 AEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174
Score = 36.3 bits (84), Expect = 0.001
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 24/107 (22%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPT-----------------EQELEDLLKEV 55
K F ++DK+ +G I + + ++ +I + E+ ++ + V
Sbjct: 98 KWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLV 157
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQ 102
D + G + F++ +++ Q+ +S Q
Sbjct: 158 DENGDGQLSLNEFVEGARRD-------KWVMKMLQMDLNPSSWISQQ 197
Score = 30.5 bits (69), Expect = 0.10
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 81 STAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
E F+V + + Q V+ + D N + + E+ + L
Sbjct: 41 FMHEFKRFFKVP---DNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNL 87
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 69.6 bits (170), Expect = 5e-16
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 39/164 (23%)
Query: 4 LDEEQITEWKEAF-ALFDKNGSGKIVSKYVGTVMRAIG---------------RNPTEQE 47
L++ Q + K F D N G I +M + E E
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 48 LEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEA--------FQVFDKDGE-- 97
DL D + V +E +L + I S A+L F+ D G+
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGI 121
Query: 98 -------------KLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+L +V + + + + ++
Sbjct: 122 VDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELY 165
Score = 46.8 bits (111), Expect = 1e-07
Identities = 8/80 (10%), Positives = 22/80 (27%), Gaps = 2/80 (2%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
L F D +G G + + + ++ + + +
Sbjct: 99 LPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQL--QCADVPAVYNVITDGGKVTF 156
Query: 64 DFESFLKLMANHIPNVDSTA 83
D + +L + + + A
Sbjct: 157 DLNRYKELYYRLLTSPAADA 176
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 67.8 bits (166), Expect = 1e-15
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFE 66
+ WKE F D++GSG + + + +G + Q L ++K + G + F+
Sbjct: 67 AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFD 124
Query: 67 SFLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
++ L + F+ D +
Sbjct: 125 DYVACCV-------KLRALTDFFRKRDHLQQ 148
Score = 66.6 bits (163), Expect = 5e-15
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 33/137 (24%)
Query: 16 FALFDK--NGSGKIVSKYVGTVMRAIGRNPTEQEL-----EDLLKEVDPDDVGSVDFESF 68
+ F G++ ++ + + G N T ++ +D D G + F +F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 69 LKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELIGLA 111
+L A + E F D+D G +LS Q + ++
Sbjct: 63 KELWA-------ALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115
Query: 112 DENNTGHVRYEEFAKVM 128
+N G + ++++
Sbjct: 116 SKN--GRIFFDDYVACC 130
Score = 24.6 bits (54), Expect = 8.9
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 8 QITEWKEAFALFDKNGSGKI 27
++ + F D G
Sbjct: 132 KLRALTDFFRKRDHLQQGSA 151
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 68.3 bits (167), Expect = 3e-15
Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 27/150 (18%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPT-EQELEDLLKEVDPDDVGS 62
+ ++ W F + SG T++ G N + ++ + D + G
Sbjct: 16 VPTQETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGF 73
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-----------------------EKL 99
VDF F+ + I +L F+++D DG
Sbjct: 74 VDFLEFIAAVN-LIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLS 132
Query: 100 SDQEVDELIGLADENNTGHVRYEEFAKVMT 129
++ ++ + D NN G + EEF M
Sbjct: 133 PEEFINLVFHKIDINNDGELTLEEFINGMA 162
Score = 43.2 bits (102), Expect = 4e-06
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGR------NPTEQELEDLLKEVDPDDVGSVDFE 66
K F L+D +G+G I + + A+ E+ + + ++D ++ G + E
Sbjct: 96 KWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLE 155
Query: 67 SFLKLMANH 75
F+ MA
Sbjct: 156 EFINGMAKD 164
Score = 32.8 bits (75), Expect = 0.016
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 20/88 (22%)
Query: 44 TEQELEDLLKE-VDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQ 102
QE + + G F L+ N + + + + FD +
Sbjct: 17 PTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNK------ 70
Query: 103 EVDELIGLADENNTGHVRYEEFAKVMTL 130
G V + EF + L
Sbjct: 71 -------------DGFVDFLEFIAAVNL 85
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 67.1 bits (164), Expect = 6e-15
Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 35/147 (23%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQEL-----EDLLKEVDPDD 59
++ + + A G+I + + + G + ++ +D D
Sbjct: 31 TQDPLYGYFAA----VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 86
Query: 60 VGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQ 102
G++ F F +L A + F FD D G +LS Q
Sbjct: 87 SGTMGFNEFKELWA-------VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQ 139
Query: 103 EVDELIGLADENNTGHVRYEEFAKVMT 129
V+ + N G + ++++
Sbjct: 140 AVNSIAKRYSTN--GKITFDDYIACCV 164
Score = 65.9 bits (161), Expect = 1e-14
Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 14/102 (13%)
Query: 1 KLTLDE-----EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
+ +E + W++ F FD + SG + + + + +G + Q + + K
Sbjct: 89 TMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY 148
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
+ G + F+ ++ L ++F+ D +
Sbjct: 149 STN--GKITFDDYIACCV-------KLRALTDSFRRRDTAQQ 181
Score = 24.7 bits (54), Expect = 9.2
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 8 QITEWKEAFALFDKNGSGKI 27
++ ++F D G +
Sbjct: 165 KLRALTDSFRRRDTAQQGVV 184
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 63.0 bits (154), Expect = 1e-14
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNP------TEQELEDLLKEVDP 57
+ + E + AF D NG G + + + T M + ++ L+K D
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 58 DDVGSVDFESFLKLMAN 74
+ G + E FL A
Sbjct: 61 NSDGKISKEEFLNANAE 77
Score = 49.9 bits (120), Expect = 2e-09
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 23/70 (32%)
Query: 83 AELLEAFQVFDKDG-----------------------EKLSDQEVDELIGLADENNTGHV 119
AEL AF+ D +G + + +LI +AD+N+ G +
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKI 66
Query: 120 RYEEFAKVMT 129
EEF
Sbjct: 67 SKEEFLNANA 76
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 63.8 bits (156), Expect = 2e-14
Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 25/112 (22%)
Query: 38 AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-- 95
++ + ++++ + S D + F +++ S ++ + F + DKD
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAA--DSFDHKKFFQMVGL---KKKSADDVKKVFHILDKDKS 55
Query: 96 ------------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
LS +E L+ D++ G + EEF+ ++
Sbjct: 56 GFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107
Score = 56.5 bits (137), Expect = 9e-12
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVS---KYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
L ++ + K+ F + DK+ SG I + + R+ + +E + L+ D D
Sbjct: 35 LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGD 94
Query: 61 GSVDFESFLKLMA 73
G + E F L+A
Sbjct: 95 GKIGVEEFSTLVA 107
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 64.7 bits (158), Expect = 3e-14
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 8 QITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFES 67
+ W++ F FD + SG + + + + +G Q + + K G + F+
Sbjct: 70 VLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS--GKITFDD 127
Query: 68 FLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
++ L ++F+ D +
Sbjct: 128 YIACCV-------KLRALTDSFRRRDSAQQ 150
Score = 55.9 bits (135), Expect = 6e-11
Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 33/139 (23%)
Query: 14 EAFALFDK--NGSGKIVSKYVGTVMRAIGRNPTEQEL-----EDLLKEVDPDDVGSVDFE 66
+ F G+I + + + G + ++ +D D G++ F
Sbjct: 3 PLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN 62
Query: 67 SFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSDQEVDELIG 109
F +L A + F FD D G +L+ Q V+ +
Sbjct: 63 EFKELWAV-------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAK 115
Query: 110 LADENNTGHVRYEEFAKVM 128
+ G + ++++
Sbjct: 116 RYSTS--GKITFDDYIACC 132
Score = 31.2 bits (71), Expect = 0.054
Identities = 4/35 (11%), Positives = 16/35 (45%)
Query: 95 DGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ + + ++ + D + +G + + EF ++
Sbjct: 35 GYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWA 69
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 64.4 bits (157), Expect = 7e-14
Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 28/152 (18%)
Query: 4 LDEEQITEWKEAFALFDKN--GSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVG 61
E++ E F + G I + + RN + + D G
Sbjct: 31 FTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALF-RNRNRRNLFADRIFDVFDVKRNG 89
Query: 62 SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG------------------------- 96
++F F++ + P+ ++ AF+++D
Sbjct: 90 VIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLS 149
Query: 97 EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
E + + VD+ AD N G + +E+ +
Sbjct: 150 EDMIEVMVDKAFVQADRKNDGKIDIDEWKDFV 181
Score = 41.3 bits (97), Expect = 2e-05
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNP--------TEQELEDLLKEVDPDDVGSVD 64
K AF L+D +G I + + ++ A+ E ++ + D + G +D
Sbjct: 114 KFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKID 173
Query: 65 FESFLKLMANH 75
+ + ++ +
Sbjct: 174 IDEWKDFVSLN 184
Score = 30.1 bits (68), Expect = 0.14
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQE 103
T +E+E L +E F KL ++ I + E FQ+ +
Sbjct: 32 TVEEVEAL-------------YELFKKLSSSIIDDGLIH---KEEFQLALFRNRNRRNLF 75
Query: 104 VDELIGLADENNTGHVRYEEFAKVMTL 130
D + + D G + + EF + + +
Sbjct: 76 ADRIFDVFDVKRNGVIEFGEFVRSLGV 102
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 62.9 bits (153), Expect = 2e-13
Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 28/150 (18%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQEL-EDLLKEVDPDDVGS 62
L + +W + F + SG++ +P+ + E + + D + G
Sbjct: 11 LSATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGY 68
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG------------------------EK 98
+DF ++ ++ + +L F+++D DG
Sbjct: 69 IDFMEYVAALS-LVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAM 127
Query: 99 LSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+++ + + D N G + EEF + +
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGV 157
Score = 42.1 bits (99), Expect = 8e-06
Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPT-------EQELEDLLK 53
K +D++ + F L+D +G+G I + +++AI E+ +
Sbjct: 83 KGKVDQKL----RWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFD 138
Query: 54 EVDPDDVGSVDFESFLKLMANH---IPNVDSTAELLEAFQVFDKDGEKLSDQE 103
++D + G + E F++ + + + + +L ++ DG+ E
Sbjct: 139 KIDINGDGELSLEEFMEGVQKDEVLLDILTRSLDLTHIVKLIQNDGKNPHAPE 191
Score = 33.2 bits (76), Expect = 0.012
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 22/106 (20%)
Query: 44 TEQELEDL---LKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE--- 97
+ E P G + F + + + + + F+ FD + +
Sbjct: 12 SATECHQWYKKFMTECPS--GQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYI 69
Query: 98 --------------KLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
DQ++ L D + G + E ++
Sbjct: 70 DFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIK 115
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 60.4 bits (147), Expect = 3e-13
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 25/112 (22%)
Query: 38 AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG- 96
++ + ++ L++ S + F ++ + S+++L E F++ D D
Sbjct: 1 SLTDILSPSDIAAALRDCQAP--DSFSPKKFFQISGM---SKKSSSQLKEIFRILDNDQS 55
Query: 97 -------------------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
L+ E + AD + G + EEF +++
Sbjct: 56 GFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ 107
Score = 56.5 bits (137), Expect = 1e-11
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMR---AIGRNPTEQELEDLLKEVDP 57
+ ++ ++ KE F + D + SG I + ++ + R T E + L D
Sbjct: 32 ISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADH 91
Query: 58 DDVGSVDFESFLKLMAN 74
D G + E F +++ +
Sbjct: 92 DGDGKIGAEEFQEMVQS 108
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 60.4 bits (147), Expect = 4e-13
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 25/112 (22%)
Query: 38 AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG- 96
AI + +++E L S +++SF + + + ++ + F + D+D
Sbjct: 2 AITDILSAKDIESALSSCQAA--DSFNYKSFFSTVGL---SSKTPDQIKKVFGILDQDKS 56
Query: 97 -------------------EKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
L+ E + D + G + EEF ++
Sbjct: 57 GFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108
Score = 53.0 bits (128), Expect = 2e-10
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVS---KYVGTVMRAIGRNPTEQELEDLLKEVDP 57
+ L + + K+ F + D++ SG I + + R T E + L D
Sbjct: 33 TVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDT 92
Query: 58 DDVGSVDFESFLKLM 72
D G + E F L+
Sbjct: 93 DGDGKIGVEEFQSLV 107
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 58.1 bits (141), Expect = 2e-12
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 1 KLTLDEEQITEWKEAFALFDKNGSGKIVS---KYVGTVMRAIGRNPTEQELEDLLKEVDP 57
L + ++ K+ F D + SG + KY ++ R TE E + L+ D
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN 91
Query: 58 DDVGSVDFESFLKLM 72
D G + + F +++
Sbjct: 92 DGDGKIGADEFQEMV 106
Score = 56.9 bits (138), Expect = 7e-12
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 30/109 (27%)
Query: 48 LEDLLKEVD-------PDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD----- 95
+ D+L D D + + + F + + S +++ + F+ D D
Sbjct: 2 ITDILSAEDIAAALQECQDPDTFEPQKFFQTSGL---SKMSASQVKDIFRFIDNDQSGYL 58
Query: 96 ---------------GEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+L++ E L+ AD + G + +EF +++
Sbjct: 59 DGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH 107
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 59.4 bits (144), Expect = 3e-12
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 1 KLTLDE-----EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
KL +E I +W+ + FD + SG I S + A G + E ++
Sbjct: 63 KLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLY-SMIIRR 121
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
D+ G++DF++F+ + + AF+ DKDG
Sbjct: 122 YSDEGGNMDFDNFISCLV-------RLDAMFRAFKSLDKDGT 156
Score = 54.0 bits (130), Expect = 3e-10
Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 34/147 (23%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTE--------QELEDLLKEVDPD 58
E++ +++ FA + ++ + + ++ + + ++ +D D
Sbjct: 1 EEVRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 59 DVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKD-----------------GEKLSD 101
G + FE F L N + ++ FD D G L++
Sbjct: 60 TTGKLGFEEFKYLWNN-------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNE 112
Query: 102 QEVDELIGLADENNTGHVRYEEFAKVM 128
+I + G++ ++ F +
Sbjct: 113 HLYSMII-RRYSDEGGNMDFDNFISCL 138
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 59.8 bits (145), Expect = 3e-12
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 35/159 (22%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTV-------MRAIGRNPTEQELEDLLKEVD 56
L +++I F + S V + + NP ++ + +
Sbjct: 14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSP 73
Query: 57 PDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------------------- 96
S+ FE FL L++ + AF++FD D
Sbjct: 74 AK--DSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG 131
Query: 97 --EKLSDQE----VDELIGLADENNTGHVRYEEFAKVMT 129
+LS E +D ++ +D + G + EF V++
Sbjct: 132 EDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 170
Score = 39.0 bits (91), Expect = 1e-04
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI-----GRNPTEQELEDL----LKEVDPDDVGSV 63
AF +FD + G + + + ++ + + E++ L L+E D D G++
Sbjct: 101 HYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTI 160
Query: 64 DFESFLKLMANH 75
+ F +++
Sbjct: 161 NLSEFQHVISRS 172
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 57.4 bits (139), Expect = 3e-12
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
D E++ + FA D N SG++ + + + P + E + + +D D G++
Sbjct: 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPA--DAEAVFQRLDADRDGAI 78
Query: 64 DFESFLKLM 72
F+ F +
Sbjct: 79 TFQEFARGF 87
Score = 42.7 bits (101), Expect = 1e-06
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 15/64 (23%)
Query: 80 DSTAELLEAFQVFDKDGE---------------KLSDQEVDELIGLADENNTGHVRYEEF 124
+ A L F D + ++ + + + D + G + ++EF
Sbjct: 24 EELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEF 83
Query: 125 AKVM 128
A+
Sbjct: 84 ARGF 87
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 60.3 bits (146), Expect = 3e-12
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 35/159 (22%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTV-------MRAIGRNPTEQELEDLLKEVD 56
L +++I F + S V + + NP ++ + +
Sbjct: 45 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSP 104
Query: 57 PDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------------------- 96
S+ FE FL L++ + AF++FD D
Sbjct: 105 AK--DSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG 162
Query: 97 --EKLSDQE----VDELIGLADENNTGHVRYEEFAKVMT 129
+LS E +D ++ +D + G + EF V++
Sbjct: 163 EDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 201
Score = 39.1 bits (91), Expect = 1e-04
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI-----GRNPTEQELEDL----LKEVDPDDVGSV 63
AF +FD + G + + + ++ + + E++ L L+E D D G++
Sbjct: 132 HYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTI 191
Query: 64 DFESFLKLMANH 75
+ F +++
Sbjct: 192 NLSEFQHVISRS 203
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 55.6 bits (134), Expect = 2e-11
Identities = 10/69 (14%), Positives = 25/69 (36%)
Query: 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDF 65
+ F FD + I + + + T+++ + L E+ + G + +
Sbjct: 20 TSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKY 79
Query: 66 ESFLKLMAN 74
FL ++
Sbjct: 80 PDFLSRFSS 88
Score = 49.4 bits (118), Expect = 5e-09
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 84 ELLEAFQVFDKD-----------------GEKLSDQEVDELIGLADENNTGHVRYEEFAK 126
+ + F+ FD + L+D++ D L N G ++Y +F
Sbjct: 25 AITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 84
Query: 127 VMT 129
+
Sbjct: 85 RFS 87
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 58.4 bits (140), Expect = 3e-11
Identities = 23/103 (22%), Positives = 55/103 (53%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
+ +EQ+ E++ +F FD+ +G + + + ++G N E E ++ VDP+ +G V
Sbjct: 719 ISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVV 778
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDE 106
F++F+ M+ + D+ +++ +F++ D ++ E+
Sbjct: 779 TFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITVDELRR 821
Score = 31.4 bits (70), Expect = 0.078
Identities = 13/86 (15%), Positives = 28/86 (32%)
Query: 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQE 103
T E+E+ + D + F + + + G + + E
Sbjct: 703 TINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAE 762
Query: 104 VDELIGLADENNTGHVRYEEFAKVMT 129
++ + D N G V ++ F M+
Sbjct: 763 FARIMSIVDPNRMGVVTFQAFIDFMS 788
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 56.0 bits (135), Expect = 1e-10
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 28/152 (18%)
Query: 4 LDEEQITEWKEAFALFDKN--GSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVG 61
+I E F G I + + + + + + D G
Sbjct: 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTKHNG 100
Query: 62 SVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG------------------------- 96
+ FE F + ++ PN ++ +FQ++D
Sbjct: 101 ILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLK 160
Query: 97 EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + + +D+ AD + G + EE+ ++
Sbjct: 161 DTVIEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
Score = 41.7 bits (98), Expect = 1e-05
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI----GRNPTEQELEDL----LKEVDPDDVGSVD 64
+F L+D G I + V ++ A G N + +ED+ +E D G +D
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKID 184
Query: 65 FESFLKLMANH 75
E + L+ H
Sbjct: 185 KEEWRSLVLRH 195
Score = 28.2 bits (63), Expect = 0.57
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 26/92 (28%)
Query: 44 TEQELEDLL---KEVDPDDV--GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEK 98
+ E+E L K++ + G ++ E F + N + F +FD
Sbjct: 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHN- 99
Query: 99 LSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
G + +EEFA+ +++
Sbjct: 100 ------------------GILGFEEFARALSV 113
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 52.2 bits (126), Expect = 2e-10
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLM 72
+ F D NG G + + V + EQ L+ + K +D D G +D F K
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 73 AN 74
+
Sbjct: 63 GS 64
Score = 41.0 bits (97), Expect = 3e-06
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 20/82 (24%)
Query: 48 LEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDEL 107
E L KE+D + G+V +E ++ ++Q + +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKK--------------------RAIKNEQLLQLI 41
Query: 108 IGLADENNTGHVRYEEFAKVMT 129
D + G + EFAK
Sbjct: 42 FKSIDADGNGEIDQNEFAKFYG 63
Score = 24.8 bits (55), Expect = 3.9
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKI 27
+E+ + + F D +G+G+I
Sbjct: 32 IKNEQLL---QLIFKSIDADGNGEI 53
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 52.5 bits (126), Expect = 1e-09
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 33/155 (21%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELED-LLKEVDPDDVGS 62
E +I EW + F SG + + + + + + + D + G+
Sbjct: 22 FTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGT 79
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------------------------- 96
+DF F+ ++ +L AF ++D DG
Sbjct: 80 IDFREFIIALS-VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKM 138
Query: 97 ---EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
E ++ +++ D N G + EEF +
Sbjct: 139 PEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA 173
Score = 32.5 bits (74), Expect = 0.018
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 24/127 (18%)
Query: 25 GKIVSKYVGTVMRAIGRNP--TEQELEDLLK---EVDPDDVGSVDFESFLKLMANHIPNV 79
GK SK VM+ + + TE E+++ K P G + E F K+ N P
Sbjct: 2 GKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPS--GHLSMEEFKKIYGNFFPYG 59
Query: 80 DSTAELLEAFQVFDKDGE-----------------KLSDQEVDELIGLADENNTGHVRYE 122
D++ F+ FD +G+ +Q++ + D + G++
Sbjct: 60 DASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKA 119
Query: 123 EFAKVMT 129
E +++
Sbjct: 120 EMLEIVQ 126
Score = 32.1 bits (73), Expect = 0.026
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGR------------NPTEQELEDLLKEVDPDDV 60
K AF+++D +G+G I + +++AI + + E+ E + +++D +
Sbjct: 102 KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRD 161
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQV 91
G + E F++ + ++ Q
Sbjct: 162 GKLSLEEFIRGAKSD-------PSIVRLLQC 185
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 46.4 bits (111), Expect = 3e-08
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 11 EWKEAFALFDKNG--SGKIVSKYVGTVMRAIGRN--PTEQELEDLLKEVDPDDVGSVDFE 66
E K AF +F +I + + VM+ +G + L+++++EVD + G V FE
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Query: 67 SFLKLMAN 74
FL +M
Sbjct: 66 EFLVMMKK 73
Score = 41.1 bits (97), Expect = 3e-06
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 21/71 (29%)
Query: 80 DSTAELLEAFQVFDKD-------------------GEKLSD--QEVDELIGLADENNTGH 118
S E+ AF+VF G L +DE+I D+N G
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
Query: 119 VRYEEFAKVMT 129
V +EEF +M
Sbjct: 62 VSFEEFLVMMK 72
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 47.5 bits (113), Expect = 1e-07
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 16 FALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75
F +FDK+ +G I + TV+ R E++L + D + G + F+ L ++A+
Sbjct: 69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASV 128
Query: 76 IPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ S L + E + V ++ L D+N G++ +EF +
Sbjct: 129 YKMMGSMVTL--------NEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSK 174
Score = 37.5 bits (87), Expect = 4e-04
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 19/94 (20%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGR------------NPTEQELEDLLKEVDPDDV 60
AF L+D N G I + T++ ++ + E ++ + K +D ++
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNED 161
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDK 94
G + + F + ++ A ++D
Sbjct: 162 GYITLDEFREGSKVD-------PSIIGALNLYDG 188
Score = 32.5 bits (74), Expect = 0.021
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 44 TEQELEDLLK---EVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKL- 99
+E++ K P G + E F+K+ P F VFDKD
Sbjct: 23 DRREIQQWHKGFLRDCPS--GQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFI 80
Query: 100 ----------------SDQEVDELIGLADENNTGHVRYEEFAKVMT 129
++++ L D N+ G++ ++E ++
Sbjct: 81 HFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVA 126
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 46.4 bits (109), Expect = 4e-07
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 5 DEEQITEW-KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSV 63
+++ W DKN K+ K + ++ + + + +E D S+
Sbjct: 5 QRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSL 64
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQE 103
+ E AE+ AF+ E LS +
Sbjct: 65 EDEEIETFYKMLTQR----AEIDRAFEEAAGSAETLSVER 100
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 44.0 bits (104), Expect = 2e-06
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 33/155 (21%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQEL-EDLLKEVDPDDVGS 62
D++++ +W + F F SG + + + E + D D G
Sbjct: 22 FDKKELQQWYKGF--FKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY 79
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------------------------- 96
+DF+ F+ + + +L+ AFQ++D D
Sbjct: 80 IDFKEFIC-ALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKL 138
Query: 97 ---EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
E ++ V+++ + D+N G + EEF +
Sbjct: 139 PEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGS 173
Score = 38.3 bits (89), Expect = 2e-04
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 19/94 (20%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGR------------NPTEQELEDLLKEVDPDDV 60
AF L+D + +G I + ++ AI + + E+ + + +D +
Sbjct: 102 IWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKD 161
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDK 94
G + E F + ++ A ++D
Sbjct: 162 GQLTLEEFCEGSKRD-------PTIVSALSLYDG 188
Score = 32.9 bits (75), Expect = 0.018
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 44 TEQELEDLLK---EVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE--- 97
++EL+ K + P G ++ F K+ P D +A F VFD D
Sbjct: 23 DKKELQQWYKGFFKDCPS--GHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYI 80
Query: 98 --------------KLSDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+ ++ L D +N G + Y+E +++
Sbjct: 81 DFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 43.4 bits (102), Expect = 2e-06
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTE---QELEDLLKEVDPDDVGSV 63
+++ ++ F + G ++S + + +EL L+ D VG V
Sbjct: 73 KRLVHYQHVFQKVQTS-PGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRV 131
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
F S + + + + F+ KDG+
Sbjct: 132 SFPSLVCFLM-------RLEAMAKTFRNLSKDGK 158
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 42.8 bits (100), Expect = 9e-06
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 1 KLTLDE-----EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
KL +E I +W+ + F+ + SG I S + A G + + +++
Sbjct: 790 KLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRY 849
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
+ G++DF++F+ + + AF+ DK+G
Sbjct: 850 SDET-GNMDFDNFISCLV-------RLDAMFRAFRSLDKNGT 883
Score = 37.8 bits (87), Expect = 4e-04
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 1 KLTLDE-----EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
KL L E +I + F FD + SG + + + + A G Q + ++
Sbjct: 593 KLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARF 652
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
DD +DF++F++ + L + F+ D +
Sbjct: 653 A-DDELIIDFDNFVRCLV-------RLEILFKIFKQLDPENT 686
Score = 33.6 bits (76), Expect = 0.015
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 24/132 (18%)
Query: 14 EAFALFDKNGSGKIV------------SKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVG 61
+ F D +G I K + + +E E +
Sbjct: 676 KIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQ--- 732
Query: 62 SVDFESFLKLMANHIPNVDSTAELLEAF-----QVFDKDGEKLSDQEVDELIGLADENNT 116
F +A V +T EL+ + D + ++ + D + T
Sbjct: 733 ---FRKLFVQLAGDDMEVSAT-ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 788
Query: 117 GHVRYEEFAKVM 128
G + +EEF +
Sbjct: 789 GKLGFEEFKYLW 800
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 41.4 bits (97), Expect = 2e-05
Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 33/155 (21%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELED-LLKEVDPDDVGS 62
E+++ +W + F SG++ + + + + + D + G
Sbjct: 22 FTEKEVQQWYKGFI--KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGR 79
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------------------------- 96
++F F++ ++ +L AF+++D D
Sbjct: 80 IEFSEFIQALSVTSRG-TLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVEL 138
Query: 97 ---EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
E ++ VD + + D+N G + +EF +
Sbjct: 139 PEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGS 173
Score = 36.7 bits (85), Expect = 7e-04
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAIGRNPT------------EQELEDLLKEVDPDDV 60
+ AF L+D + G I + ++ AI + E+ ++ + +D +
Sbjct: 102 RWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNAD 161
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFD 93
G + + F + +++A ++D
Sbjct: 162 GKLTLQEFQEGSKAD-------PSIVQALSLYD 187
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 40.1 bits (94), Expect = 2e-05
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ + ++++ F DK SG + T++ + +L + D D G
Sbjct: 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGK 64
Query: 63 VDFESFLKLM 72
+ E F+ M
Sbjct: 65 LTAEEFILAM 74
Score = 34.0 bits (78), Expect = 0.003
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 55 VDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADEN 114
V V + +L +H + +A + + L ++ + L+D +
Sbjct: 3 VAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQ--SSLPQAQLASIWNLSDID 60
Query: 115 NTGHVRYEEFAKVMTL 130
G + EEF M L
Sbjct: 61 QDGKLTAEEFILAMHL 76
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 41.1 bits (97), Expect = 3e-05
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 10/94 (10%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ K L + +G S + + E + V
Sbjct: 312 NFSVRKQEIIKVTEQLIEAISNGDFES----------YTKMCDPGMTAFEPEALGNLVEG 361
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG 96
+DF F + +L D
Sbjct: 362 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDE 395
Score = 33.4 bits (77), Expect = 0.012
Identities = 6/59 (10%), Positives = 12/59 (20%), Gaps = 9/59 (15%)
Query: 15 AFALFDKNGSGKIVSKYVGTVMR---AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLK 70
+ S I +R + + + V G F +
Sbjct: 387 PHIHLMGDESACI------AYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHR 439
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 40.7 bits (95), Expect = 3e-05
Identities = 20/157 (12%), Positives = 54/157 (34%), Gaps = 35/157 (22%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELED-LLKEVDPDDVGS 62
EE++ W ++F +G+I + ++ + + + + D + G+
Sbjct: 30 FSEEELCSWYQSF--LKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGT 87
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAFQVFDKDG-------------------------- 96
+DF+ ++ + + +L AF ++D DG
Sbjct: 88 LDFKEYVIALHMT-TAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVK 146
Query: 97 -----EKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
E ++ +++ +N+ + +EF +
Sbjct: 147 LLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGT 183
Score = 31.1 bits (70), Expect = 0.073
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 15 AFALFDKNGSGKIVSKYVGTVMRAIGRNPT--------------EQELEDLLKEVDPDDV 60
AF+L+D +G+G I V ++ AI + T E+ E + K +D
Sbjct: 112 AFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDD 171
Query: 61 GSVDFESFLKLMANH 75
+ + F++ +
Sbjct: 172 DKLTEKEFIEGTLAN 186
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 40.6 bits (94), Expect = 6e-05
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 1 KLTLDE-----EQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
KL L E +I ++++ + D + SG + S + + G Q + ++
Sbjct: 591 KLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARF 650
Query: 56 DPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE 97
DD +DF++F++ + + L + F+ D +
Sbjct: 651 A-DDELIIDFDNFVRCLV-RLEI------LFKIFKQLDPENT 684
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 40.0 bits (93), Expect = 6e-05
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 16 FALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75
F FD +G+G I + + + R ++L+ D + G + E L +M +
Sbjct: 135 FNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSI 194
Query: 76 IPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + E + V+ D N G V +EF +
Sbjct: 195 YDMMGRHTYPILR--------EDAPLEHVERFFQKMDRNQDGVVTIDEFLETC 239
Score = 35.8 bits (82), Expect = 0.002
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI----GRNPT--------EQELEDLLKEVDPDDV 60
K AF L+D N G I + + +M++I GR+ + +E +++D +
Sbjct: 168 KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQD 227
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFD 93
G V + FL+ ++ + Q+F+
Sbjct: 228 GVVTIDEFLETCQKD-------ENIMNSMQLFE 253
Score = 30.4 bits (68), Expect = 0.13
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 18/104 (17%)
Query: 44 TEQELEDLLKEVDPDDV-GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKL--- 99
T++EL+ L + + G VD ++F + + P D+T F FD DG
Sbjct: 89 TKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHF 148
Query: 100 --------------SDQEVDELIGLADENNTGHVRYEEFAKVMT 129
+++ L D N G + EE +M
Sbjct: 149 EDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMK 192
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 38.3 bits (89), Expect = 8e-05
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVG 61
LT +++ + + +G++++ ++ G L + D D G
Sbjct: 3 LTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPD--LILGKIWDLADTDGKG 60
Query: 62 SVDFESFLKLMA 73
+ + F +
Sbjct: 61 VLSKQEFFVALR 72
Score = 31.7 bits (72), Expect = 0.023
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 15/59 (25%)
Query: 87 EAFQVFDKDGE---------------KLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
+ ++ + L D + ++ LAD + G + +EF + L
Sbjct: 15 KYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRL 73
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 39.2 bits (91), Expect = 1e-04
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 16 FALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75
F FD +G + + T + + R ++L D + G ++ E + ++
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 154
Query: 76 IPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + E Q VD D+N G V +EF +
Sbjct: 155 YDMMGK--------YTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 199
Score = 34.2 bits (78), Expect = 0.006
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 19/94 (20%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI----GRNPT--------EQELEDLLKEVDPDDV 60
+ F L+D N G I + + +++AI G+ Q ++ +++D +
Sbjct: 128 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 187
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFDK 94
G V + FL+ ++ + Q+F
Sbjct: 188 GIVTLDEFLESCQED-------DNIMRSLQLFQN 214
Score = 30.3 bits (68), Expect = 0.13
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 22/106 (20%)
Query: 44 TEQELEDL---LKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLS 100
T++EL+ L K P G V+ E+F ++ A P+ D++ F FD
Sbjct: 49 TKRELQVLYRGFKNECPS--GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSV 106
Query: 101 DQE-------------VDELIGLA----DENNTGHVRYEEFAKVMT 129
E V E + D N G++ EE ++
Sbjct: 107 KFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVK 152
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 36.6 bits (85), Expect = 2e-04
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ +EQ + F + +G I EL + + D D G+
Sbjct: 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGA 59
Query: 63 VDFESFLKLM 72
+ + F
Sbjct: 60 LTLDEFCAAF 69
Score = 33.2 bits (76), Expect = 0.006
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 77 PNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
P+++ A + F K L E+ + L+D + G + +EF L
Sbjct: 20 PDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFCAAFHL 71
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 36.6 bits (85), Expect = 3e-04
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ + ++ E F DK+ G + V + L + D D G
Sbjct: 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLK--TGLPSTLLAHIWSLCDTKDCGK 60
Query: 63 VDFESFLKLM 72
+ + F
Sbjct: 61 LSKDQFALAF 70
Score = 33.9 bits (78), Expect = 0.003
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 15/59 (25%)
Query: 87 EAFQVFDKDGE---------------KLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
E F DKD + L + + L D + G + ++FA L
Sbjct: 14 EIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHL 72
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 37.9 bits (88), Expect = 3e-04
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 16 FALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75
F FD +G + + T + + R ++L D + G ++ E + ++
Sbjct: 62 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 121
Query: 76 IPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEF 124
+ + E Q VD D+N G V +EF
Sbjct: 122 YDMMGK--------YTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEF 162
Score = 32.1 bits (73), Expect = 0.029
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 19/93 (20%)
Query: 13 KEAFALFDKNGSGKI----VSKYVGTVMRAIGRNPT--------EQELEDLLKEVDPDDV 60
+ F L+D N G I + V + +G+ Q ++ +++D +
Sbjct: 95 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 154
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFD 93
G V + FL+ ++ + Q+F
Sbjct: 155 GIVTLDEFLESXQED-------DNIMRSLQLFQ 180
Score = 29.4 bits (66), Expect = 0.22
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 22/105 (20%)
Query: 44 TEQELEDLL---KEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLS 100
T++EL+ L K P G V+ E+F ++ A P+ D++ F FD
Sbjct: 16 TKRELQVLYRGFKNEXPS--GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSV 73
Query: 101 DQE-------------VDELIGLA----DENNTGHVRYEEFAKVM 128
E V E + D N G++ EE ++
Sbjct: 74 KFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIV 118
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 37.9 bits (88), Expect = 3e-04
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 16 FALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANH 75
F FD + +G + + + + R +++L D + G + E L +M
Sbjct: 108 FNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAI 167
Query: 76 IPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + E Q V+ D+N G V +EF +
Sbjct: 168 YDMMGK--------CTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESC 212
Score = 36.8 bits (85), Expect = 8e-04
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 13 KEAFALFDKNGSGKIVSKYVGTVMRAI----GRNPT--------EQELEDLLKEVDPDDV 60
AF L+D N G I + + +M+AI G+ Q +E +++D +
Sbjct: 141 NWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKD 200
Query: 61 GSVDFESFLKLMANHIPNVDSTAELLEAFQVFD 93
G V + F++ ++ + Q+F+
Sbjct: 201 GVVTIDEFIESCQKD-------ENIMRSMQLFE 226
Score = 32.9 bits (75), Expect = 0.019
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 22/106 (20%)
Query: 44 TEQELEDL---LKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGE--- 97
T++EL+ L K P G V+ E+F ++ + P DST F FD D
Sbjct: 62 TKKELQILYRGFKNECPS--GVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAV 119
Query: 98 ----------KLSDQEVDELIGLA----DENNTGHVRYEEFAKVMT 129
L V E + A D N G++ EE +M
Sbjct: 120 SFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMK 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 6e-04
Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 28/146 (19%)
Query: 1 KLTLDEEQITEWKEAF---ALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV-- 55
+ +L+ + E+++ F ++F + I + ++ I + + ++ ++ ++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPS--AHIPTI----LLSLIWFDVIKSDVMVVVNKLHK 413
Query: 56 ------DPDDVGSVDFESFLKLMANHIPNVDST-AELLEAFQVFDK-DGEKLSDQEVD-- 105
P + ++ S + + N + +++ + + D + L +D
Sbjct: 414 YSLVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 106 --ELIG--LADENNTGHVRYEEFAKV 127
IG L + + R F V
Sbjct: 473 FYSHIGHHLKNIEHPE--RMTLFRMV 496
Score = 31.7 bits (71), Expect = 0.055
Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 53/150 (35%)
Query: 23 GSGKIVSKYVGTVMRA---------------IGRNPTEQE----LEDLLKEVDPDDVGSV 63
GSGK + V + + + + L+ LL ++DP+
Sbjct: 160 GSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 64 DFESFLKLMANHI-------------PN----VD--STAELLEAFQVFDKDGEKL----S 100
D S +KL + I N + A+ AF + K+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCKILLTTR 273
Query: 101 DQEV-DELIGLADENNTGHVRYEEFAKVMT 129
++V D L T H+ + + +T
Sbjct: 274 FKQVTDFLSA----ATTTHISLDHHSMTLT 299
Score = 29.8 bits (66), Expect = 0.22
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 63 VDFESFLKLMANHIPNVDSTAELLEAF-QVFD----KDGEK--LSDQEVDELIGLADENN 115
+DFE + D + +AF FD +D K LS +E+D +I D +
Sbjct: 7 MDFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Score = 29.8 bits (66), Expect = 0.25
Identities = 15/110 (13%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 30 KYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVD--FESFLKLMANHIPN-VDSTAE-- 84
K V + ++I +++E++ ++ D V F + L + V+
Sbjct: 36 KDVQDMPKSI---LSKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 85 ---LLEAFQVFDKDGEKLSDQEVDELIGLADENNT---GHV-RYEEFAKV 127
L+ + + ++ +++ L ++N +V R + + K+
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 35.5 bits (82), Expect = 0.001
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ EEQ + F + S I + EL + + D D G+
Sbjct: 15 RITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGA 72
Query: 63 VDFESFLKLM 72
+ F
Sbjct: 73 LTLPEFCAAF 82
Score = 34.3 bits (79), Expect = 0.003
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 64 DFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEE 123
E ++ + P+ S A F K KLS E+ + L+D + G + E
Sbjct: 20 QREYYVNQFRSLQPDPSSFISGSVAKNFFTK--SKLSIPELSYIWELSDADCDGALTLPE 77
Query: 124 FAKVMTL 130
F L
Sbjct: 78 FCAAFHL 84
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 34.8 bits (80), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 98 KLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
L + ++ LAD NN G + EF+ M L
Sbjct: 62 GLPQPVLAQIWALADMNNDGRMDQVEFSIAMKL 94
Score = 26.0 bits (57), Expect = 2.7
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ E+ + + F SG I G + L + D ++ G
Sbjct: 26 AITVEERAKHDQQFHSLK-PISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGR 82
Query: 63 VDFESFLKLM 72
+D F M
Sbjct: 83 MDQVEFSIAM 92
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 32.8 bits (75), Expect = 0.009
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 87 EAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
+ V KL + + L+D ++ G + +EFA M L
Sbjct: 35 KVKPVLLN--SKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFL 76
Score = 25.5 bits (56), Expect = 3.4
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 3 TLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGS 62
+ E ++ F +G + V V+ L + + D D G
Sbjct: 8 AVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGM 64
Query: 63 VDFESFLKLM 72
+D + F M
Sbjct: 65 LDRDEFAVAM 74
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 32.6 bits (74), Expect = 0.017
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 87 EAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
A + K L + + ++ LAD + G + EEFA L
Sbjct: 71 NAKKEMVKSK--LPNTVLGKIWKLADVDKDGLLDDEEFALANHL 112
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 31.1 bits (70), Expect = 0.060
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 4 LDEEQITEWKEAFALFDKNGSGKI--------VSKYVGTVMRAIGRNPTEQELEDL---- 51
+ +++ F + D +G+ + ++ +E EL ++
Sbjct: 64 MSPQELQLH--YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGV 121
Query: 52 LKEVDPDDVGSVDFESFLKLM 72
L++ D ++ G +D+ F K +
Sbjct: 122 LRDDDKNNDGYIDYAEFAKSL 142
Score = 28.8 bits (64), Expect = 0.33
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 102 QEVDELIGLADENNTGHVRYEEFAKVM 128
+D ++ D+NN G++ Y EFAK +
Sbjct: 116 NIIDGVLRDDDKNNDGYIDYAEFAKSL 142
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4,
AP sucrose, structural genomics, PSI; HET: SUC; 2.01A
{Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Length = 292
Score = 31.3 bits (72), Expect = 0.061
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 25/91 (27%)
Query: 15 AFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVD----PDDV--------GS 62
FA +G KI+ K T + LEDLL +D D G+
Sbjct: 17 KFASLTPDG--KILDK---------TSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGA 65
Query: 63 VDFESFLKLMANHIPNVDST--AELLEAFQV 91
V+ E+ + + +P + E L ++Q+
Sbjct: 66 VNQETGVIDGFSAVPYIHGFSWYEALSSYQL 96
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 29.8 bits (67), Expect = 0.082
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 37 RAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+G+ E + L+ +D + VDF+ + ++
Sbjct: 44 SFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 81
Score = 26.3 bits (58), Expect = 1.6
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
G++ + +L+ D N V ++E+ +
Sbjct: 47 GKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 30.8 bits (69), Expect = 0.086
Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 16 FALFDKNGSGKIVSKYVGTVMRAIGR----NPTEQELEDL----LKEVDPDDVGSVDFES 67
F + DKN G++ ++ V ++ + ++ ++ ++E+DP ++G ++ E
Sbjct: 104 FDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMED 163
Query: 68 FLKLMANHIPNVDSTA 83
L+ + +
Sbjct: 164 LEALLLQSPSEAAARS 179
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 29.7 bits (67), Expect = 0.088
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 39 IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+ ++ ++K++D G V F+SF L+A
Sbjct: 42 LENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAG 77
Score = 27.8 bits (62), Expect = 0.47
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 21/65 (32%)
Query: 85 LLEAFQVFDKDGEKLSDQE---------------------VDELIGLADENNTGHVRYEE 123
++ F F D L+ ++ VD+++ D+ G V ++
Sbjct: 11 MMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQS 70
Query: 124 FAKVM 128
F ++
Sbjct: 71 FFSLI 75
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 31.0 bits (71), Expect = 0.098
Identities = 8/53 (15%), Positives = 12/53 (22%), Gaps = 17/53 (32%)
Query: 91 VFDKDGEKLSDQ-----------------EVDELIGLADENNTGHVRYEEFAK 126
V DKDG ++ + E L + Y
Sbjct: 108 VVDKDGIEIRREKENEIEDLFFTERFNTIEWSSLTTEVKREDRVISTYVNGIL 160
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 29.9 bits (67), Expect = 0.098
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 39 IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+G+ E + L+ +D + VDF+ + ++
Sbjct: 58 LGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
Score = 26.4 bits (58), Expect = 1.7
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
G++ + +L+ D N V ++E+ +
Sbjct: 59 GKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 30.7 bits (70), Expect = 0.11
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 93 DKDGEKLSDQEV-DELIGL 110
KDG L+D EV LIGL
Sbjct: 242 YKDGRPLTDDEVAGMLIGL 260
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 29.4 bits (66), Expect = 0.12
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
E + + +D + VDF +++ +A
Sbjct: 52 ECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81
Score = 26.0 bits (57), Expect = 2.4
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + + ++ + + D N V + E+ + +
Sbjct: 47 PTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 29.5 bits (66), Expect = 0.14
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 39 IGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+G+ E + L+ +D + VDF+ + +++
Sbjct: 49 LGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84
Score = 26.8 bits (59), Expect = 1.3
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
G++ + +L+ D N V ++E+ +
Sbjct: 50 GKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 28.9 bits (65), Expect = 0.15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMA 73
+ L+DL +E+D + G V FE F L+
Sbjct: 46 PRTLDDLFQELDKNGDGEVSFEEFQVLVK 74
Score = 25.8 bits (57), Expect = 1.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 81 STAELLEAFQVFDKDGEKLSDQE-VDELIGLADENNTGHVRYEEFAKVM 128
S EL + Q + L +D+L D+N G V +EEF ++
Sbjct: 27 SKEELKQLIQ--AEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLV 73
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 30.3 bits (69), Expect = 0.16
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 93 DKDGEKLSDQEV-DELIGL 110
+DG +S EV ++
Sbjct: 243 YRDGTPMSLHEVCGMIVAA 261
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 29.0 bits (65), Expect = 0.17
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 81 STAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+L + + + + + + D D N G V ++EF ++
Sbjct: 30 YRDDLKKLLE--TESPQYIRKKGADVWFKELDINTDGAVNFQEFLILV 75
Score = 29.0 bits (65), Expect = 0.19
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
++ + KE+D + G+V+F+ FL L+
Sbjct: 48 KKGADVWFKELDINTDGAVNFQEFLILVIK 77
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 29.0 bits (65), Expect = 0.18
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+ ++++ + +D + VDF+ F+ L+A
Sbjct: 54 KAVIDEIFQGLDANQDEQVDFQEFISLVAI 83
Score = 24.4 bits (53), Expect = 9.4
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+DE+ D N V ++EF ++
Sbjct: 49 KNIKDKAVIDEIFQGLDANQDEQVDFQEFISLV 81
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 28.6 bits (64), Expect = 0.26
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+ + L++ +D + G + F+ + L+
Sbjct: 54 RKAADKLIQNLDANHDGRISFDEYWTLIGG 83
Score = 25.9 bits (57), Expect = 2.2
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ + + D+LI D N+ G + ++E+ ++
Sbjct: 49 SDTGNRKAADKLIQNLDANHDGRISFDEYWTLI 81
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 28.2 bits (63), Expect = 0.29
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 37 RAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+ ++ ++KE+D + G VDF+ F+ L+A
Sbjct: 43 SFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
Score = 24.8 bits (54), Expect = 5.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
+ VD+++ DEN G V ++EF ++
Sbjct: 46 DVQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 28.2 bits (63), Expect = 0.32
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
E ++DL+K +D + +DF+ + +
Sbjct: 49 ESSIDDLMKSLDKNSDQEIDFKEYSVFLTM 78
Score = 24.3 bits (53), Expect = 7.4
Identities = 5/28 (17%), Positives = 17/28 (60%)
Query: 101 DQEVDELIGLADENNTGHVRYEEFAKVM 128
+ +D+L+ D+N+ + ++E++ +
Sbjct: 49 ESSIDDLMKSLDKNSDQEIDFKEYSVFL 76
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 28.3 bits (63), Expect = 0.35
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 40 GRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
N E+ +E +++++D + + FE F+ LMA
Sbjct: 50 KENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR 84
Score = 26.4 bits (58), Expect = 1.7
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
E +++ ++ ++ D N + +EEF +M
Sbjct: 50 KENKNEKVIEHIMEDLDTNADKQLSFEEFIMLM 82
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.3 bits (63), Expect = 0.41
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+E ++ ++D + VDF F+ L+A
Sbjct: 52 PMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 27.9 bits (62), Expect = 0.41
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
+ ++ LLK++D + VDF F+ +A
Sbjct: 51 KDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80
Score = 24.4 bits (53), Expect = 8.0
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
VD+L+ D N V + EF +
Sbjct: 46 QSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFV 78
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 27.8 bits (62), Expect = 0.47
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
++ ++ +++ +D + G DF+ F+ +A
Sbjct: 51 QEVVDKVMETLDSNGDGECDFQEFMAFVAM 80
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 27.9 bits (62), Expect = 0.49
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
E+ L+ L+ +D + VDF+ + +A
Sbjct: 53 EEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82
Score = 25.2 bits (55), Expect = 4.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 96 GEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
GEK+ ++ + +L+G DEN+ V ++E+A +
Sbjct: 48 GEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFL 80
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 27.9 bits (62), Expect = 0.52
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
L++ +K +D + + F + +L+
Sbjct: 61 VGSLDEKMKSLDVNQDSELKFNEYWRLIGE 90
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 28.6 bits (63), Expect = 0.65
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 41 RNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLS 100
R+P L L+ E+ + G A +IP + + G
Sbjct: 2 RHPIPDYLASLVTELGAVNPGET---------AQYIPVLAEADPDRFGIALATPTGRLHC 52
Query: 101 DQEVDE 106
+ D
Sbjct: 53 AGDADV 58
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 27.1 bits (60), Expect = 0.80
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 45 EQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
L+ ++K++D D G +DF+ FL L+
Sbjct: 55 PGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 27.1 bits (60), Expect = 0.84
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 84 ELLEA-FQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEF 124
+++ F F +K + ++ D+N + + EF
Sbjct: 33 TMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEF 74
Score = 26.3 bits (58), Expect = 2.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 48 LEDLLKEVDPDDVGSVDFESFLKLMA 73
L D+ ++ D ++ +DF FL L+
Sbjct: 54 LADVFEKKDKNEDKKIDFSEFLSLLG 79
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 26.7 bits (59), Expect = 1.0
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 38 AIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
IG + E+ L++++D + V+F+ ++ +
Sbjct: 43 TIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGA 79
Score = 26.7 bits (59), Expect = 1.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 81 STAELLEAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVM 128
S EL E Q G KL D E+ L+ D N V ++E+ +
Sbjct: 30 SKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFL 77
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 28.0 bits (63), Expect = 1.0
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 93 DKDGEKLSDQE-VDELIGL 110
D + + LS E D+++ L
Sbjct: 233 DDNNQPLSLPELKDQILLL 251
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.2
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 33 GTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVD 80
G+ +R + + +E+ ++ ++ P V +E+ + A HI +D
Sbjct: 465 GSDLRVLSGSISERIVDCII--RLP-----VKWETTTQFKATHI--LD 503
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 27.5 bits (60), Expect = 1.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 87 EAFQVFDKDGEKLSDQEVDELIGLADENNTGHVRYEEFAKVMTL 130
+A L + + + L+D + G + EEFA L
Sbjct: 478 KAKTWMVGTK--LPNSVLGRIWKLSDVDRDGMLDDEEFALASHL 519
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 27.3 bits (61), Expect = 1.6
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 85 LLEAFQVFDKDGEKLSDQEV-DELIGL 110
LLEA D +G+ + +QE+ D+++ +
Sbjct: 248 LLEAK---DDNGDPIGEQEIHDQVVAI 271
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 26.4 bits (58), Expect = 1.8
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 16/76 (21%)
Query: 13 KEAFALFDKNGSG--------KIVSKYVGTVMRAIGRNPTEQELED--------LLKEVD 56
K F L D N G + +K + V +E+E+ ++K VD
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 57 PDDVGSVDFESFLKLM 72
+ V E FL
Sbjct: 83 TNQDRLVTLEEFLAST 98
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 27.2 bits (60), Expect = 1.8
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 44 TEQELEDLLKEVDPDDV----GSVDFESFLKLMANHIPNVDSTAELLE 87
+ L + VD + V+ + +L PNV TAEL+
Sbjct: 157 DQPMWRRLAETVD--LIVDSAAMVNAFPYHELFG---PNVAGTAELIR 199
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 26.7 bits (60), Expect = 2.3
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 15/50 (30%)
Query: 92 FDKDGEKLSDQEVDEL---------------IGLADENNTGHVRYEEFAK 126
F +G KL D +E+ G Y E
Sbjct: 113 FSSNGFKLDDALEEEVEDMIDGDFIYQPQFKFGSYKILANAIDEYIESIY 162
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 26.7 bits (60), Expect = 2.3
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 18/53 (33%)
Query: 92 FDKDGEKLSD-----------QEVDEL-------IGLADENNTGHVRYEEFAK 126
F DG KL+D +EVDEL +G + G +Y ++ K
Sbjct: 133 FGSDGFKLTDEQEAEIEALLDKEVDELPRPTGTNLGQVSDYFEGGQKYLQYIK 185
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.7
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 17/43 (39%)
Query: 45 EQELEDL---LKEVDPDDVGSVDFESFLKLMANHIPNVDSTAE 84
+Q L+ L LK D + +A + +T E
Sbjct: 19 KQALKKLQASLKLYADDSAPA---------LA-----IKATME 47
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 26.4 bits (59), Expect = 3.1
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 15/51 (29%)
Query: 91 VFDKDGEKLSDQEVDELIGLADE--------NNTGHV-------RYEEFAK 126
+ + +G L + + L + G V Y E K
Sbjct: 112 LLEPNGMGLKKEREAIVEELFFKEDFDRAKWYEIGEVRREDIIKPYIEAIK 162
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 26.2 bits (57), Expect = 3.9
Identities = 12/74 (16%), Positives = 22/74 (29%)
Query: 15 AFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
LF K I + + P + ++ + + + E L L
Sbjct: 251 PVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEETNASDQQNEPQLGLKDQ 310
Query: 75 HIPNVDSTAELLEA 88
+ +V S A L
Sbjct: 311 QVLDVKSYARLFSK 324
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor,
transcription regulation, -10 element recognit domain,
transcription; 2.70A {Mycobacterium tuberculosis}
Length = 112
Score = 25.5 bits (56), Expect = 3.9
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 5 DEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
D+E +T + A + + V R + +DL +E
Sbjct: 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQET 57
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric
acid cycle structural genomics target, NYSGXRC, PSI;
2.70A {Escherichia coli} SCOP: e.44.1.1
Length = 483
Score = 26.2 bits (57), Expect = 4.3
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 68 FLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQEVDELIGL 110
F +A P +LE D +L V+E + L
Sbjct: 443 FKINLARQFPT-RQQQRILEVSL----DRARLEQMPVNEYLDL 480
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 25.4 bits (56), Expect = 4.4
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 13/38 (34%)
Query: 18 LFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
L + G I I N T ++L ++LK +
Sbjct: 119 LINDEG--VI-----------IAANVTPEKLTEILKAI 143
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 25.9 bits (58), Expect = 4.5
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 40 GRNPTEQELEDLL 52
R +++EL+DL
Sbjct: 411 QREASKEELKDLE 423
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 25.8 bits (57), Expect = 4.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 44 TEQELEDLLKEVDPDDVGSVDFESFLKL 71
T +E L+ V D S++ E F L
Sbjct: 139 TVSAVEKLMPGVPVDYFISINMEGFKDL 166
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 26.0 bits (57), Expect = 4.9
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 43 PTEQELEDLLKEVDPDDV 60
P ++ + + + +D D +
Sbjct: 633 PQDRYIINFVSNLDTDVL 650
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 25.9 bits (58), Expect = 5.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 40 GRNPTEQELEDLL 52
G +E+ELEDL
Sbjct: 344 GEPLSEKELEDLE 356
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits;
transcription/TBP-associated factors, TBP-associated
factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Length = 76
Score = 24.8 bits (54), Expect = 5.4
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMAN 74
T+++L+DL++EVDP++ D E L +A+
Sbjct: 7 TKKKLQDLVREVDPNEQLDEDVEEMLLQIAD 37
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 25.8 bits (57), Expect = 5.4
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 53 KEVDPDDVGSVD--------FESFLKLM-ANHIPNVD---STAELLEAFQVFDKDGEKLS 100
+DP +V +V FE+ M + + ++D +T EL + + KL
Sbjct: 340 SGLDPKNVFTVTVMPCTSKKFEADRPQMEKDGLRDIDAVITTRELAKMIKDAKIPFAKLE 399
Query: 101 DQEVDELIGLA 111
D E D +G
Sbjct: 400 DSEADPAMGEY 410
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 25.6 bits (57), Expect = 5.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 9 ITEWKEAFALFDKNGSGKIV 28
+++EAF L +GK+V
Sbjct: 325 FDKYEEAFELMRAGKTGKVV 344
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger,
ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo
sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A
1ldk_A 1ldk_B 3rtr_A
Length = 760
Score = 25.9 bits (56), Expect = 5.5
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 6 EEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEV 55
I + S +++++Y ++++ +NP E ELED L +V
Sbjct: 384 GRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQV 433
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase,
hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis}
PDB: 4a1o_A*
Length = 523
Score = 25.9 bits (58), Expect = 5.5
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 40 GRNPTEQELEDLL 52
G L DL+
Sbjct: 403 GSPADPATLTDLV 415
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 25.6 bits (56), Expect = 5.5
Identities = 5/60 (8%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQE 103
+ E++ + +D + D L+ + +P ++ + + ++++ +
Sbjct: 111 SNDEIKRAILTMDEQEDLPKDM---LEQLLKFVP----EKSDIDLLEEHKHELDRMAKAD 163
>2l2o_A UPF0727 protein C6ORF115; HSPC280, winged helix, unknown
function; NMR {Homo sapiens}
Length = 89
Score = 24.7 bits (54), Expect = 5.6
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 18 LFDKNGSGKIVSKYVGTVMRAIGRNPTEQELEDLLKEVDPDDV 60
LF + S + VGT+ A R E LL+ V DDV
Sbjct: 33 LFRDDKSANLFEALVGTLKAAKRRKIVTYPGELLLQGVH-DDV 74
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 25.2 bits (56), Expect = 8.3
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 9 ITEWKEAFALFDKNGSGKIV 28
++ ++EAF L + K++
Sbjct: 319 LSRYREAFGLLASGQAVKVI 338
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 25.1 bits (55), Expect = 9.4
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 44 TEQELEDLLKEVDPDDVGSVDFESFLKLMANHIPNVDSTAELLEAFQVFDKDGEKLSDQE 103
QE+++++ EV+ + ++ +K M E L+ ++ + L++ E
Sbjct: 30 PYQEIKNVILEVNEAVLTESMIQNLIKQMP--------EPEQLKMLSELKEEYDDLAESE 81
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 24.9 bits (55), Expect = 9.6
Identities = 2/26 (7%), Positives = 6/26 (23%)
Query: 7 EQITEWKEAFALFDKNGSGKIVSKYV 32
+ K + + + V
Sbjct: 373 ADCQQRKRTLLRKTHFDNVPVKPQRV 398
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 24.4 bits (53), Expect = 9.9
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI 39
L E+ + E + FD + + I + A+
Sbjct: 35 EPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADAL 72
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 24.6 bits (53), Expect = 10.0
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 2 LTLDEEQITEWKEAFALFDKNGSGKIVSKYVGTVMRAI 39
L E+ + E + FD + I + A+
Sbjct: 12 EPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADAL 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.133 0.365
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,169,711
Number of extensions: 132786
Number of successful extensions: 1540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 879
Number of HSP's successfully gapped: 413
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.7 bits)