Query psy6109
Match_columns 192
No_of_seqs 162 out of 1036
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 17:49:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06558 V-type ATP synthase s 99.9 7.7E-22 1.7E-26 162.1 11.4 115 51-192 43-157 (159)
2 PRK08344 V-type ATP synthase s 99.9 5.1E-21 1.1E-25 157.0 11.7 127 49-191 27-154 (157)
3 PRK09621 V-type ATP synthase s 99.8 1.7E-20 3.6E-25 151.8 11.3 111 50-189 30-140 (141)
4 PRK14893 V-type ATP synthase s 99.8 7.8E-20 1.7E-24 150.7 11.8 119 51-191 37-155 (161)
5 PRK06271 V-type ATP synthase s 99.8 2E-19 4.4E-24 153.6 11.0 113 50-191 97-209 (213)
6 PRK06649 V-type ATP synthase s 99.7 3E-17 6.5E-22 133.6 11.0 114 50-190 29-142 (143)
7 PRK06271 V-type ATP synthase s 99.7 5.5E-17 1.2E-21 138.6 10.6 109 51-191 27-135 (213)
8 PRK06876 F0F1 ATP synthase sub 99.7 1E-16 2.2E-21 118.9 9.9 70 123-192 3-76 (78)
9 PF00137 ATP-synt_C: ATP synth 99.7 1.3E-16 2.7E-21 113.2 9.4 66 127-192 1-66 (66)
10 COG0636 AtpE F0F1-type ATP syn 99.7 1.3E-16 2.8E-21 118.0 9.6 68 125-192 6-77 (79)
11 CHL00061 atpH ATP synthase CF0 99.7 2.6E-16 5.7E-21 117.2 9.9 69 124-192 5-77 (81)
12 TIGR03322 alt_F1F0_F0_C altern 99.7 2.3E-16 5E-21 118.8 9.7 71 121-191 3-77 (86)
13 PRK13468 F0F1 ATP synthase sub 99.7 2.8E-16 6E-21 117.3 9.8 71 121-191 2-76 (82)
14 PRK13471 F0F1 ATP synthase sub 99.7 3.8E-16 8.2E-21 117.5 9.6 70 122-191 10-83 (85)
15 PRK07354 F0F1 ATP synthase sub 99.7 4.6E-16 1E-20 115.6 9.9 69 124-192 5-77 (81)
16 PRK13469 F0F1 ATP synthase sub 99.7 7.7E-16 1.7E-20 114.0 9.8 70 122-192 5-78 (79)
17 PRK06251 V-type ATP synthase s 99.7 6.7E-16 1.4E-20 119.6 9.7 71 122-192 30-100 (102)
18 KOG0233|consensus 99.6 6.6E-17 1.4E-21 136.0 3.5 122 52-192 70-191 (196)
19 PRK08482 F0F1 ATP synthase sub 99.6 1E-15 2.2E-20 119.1 9.7 70 122-191 26-99 (105)
20 PRK07558 F0F1 ATP synthase sub 99.6 1.1E-15 2.5E-20 112.2 9.3 67 125-192 4-74 (74)
21 MTH00222 ATP9 ATP synthase F0 99.6 1.4E-15 3E-20 112.6 9.3 70 122-192 3-76 (77)
22 PRK13464 F0F1 ATP synthase sub 99.6 3.9E-15 8.5E-20 115.3 9.4 69 124-192 11-83 (101)
23 PRK05880 F0F1 ATP synthase sub 99.6 1.1E-14 2.3E-19 108.8 9.9 69 124-192 5-77 (81)
24 PRK07159 F0F1 ATP synthase sub 99.6 1.2E-14 2.6E-19 112.3 8.9 66 126-192 30-99 (100)
25 PRK13466 F0F1 ATP synthase sub 99.5 4E-14 8.7E-19 102.2 8.1 57 133-189 5-65 (66)
26 PRK13467 F0F1 ATP synthase sub 99.5 4.3E-14 9.2E-19 102.1 7.9 56 134-189 6-65 (66)
27 TIGR01260 ATP_synt_c ATP synth 99.5 6.7E-14 1.4E-18 98.5 6.4 54 139-192 1-58 (58)
28 PRK14893 V-type ATP synthase s 99.5 1.6E-13 3.4E-18 113.4 9.5 70 122-191 5-74 (161)
29 PRK07874 F0F1 ATP synthase sub 99.5 1.9E-13 4.2E-18 102.0 7.9 65 120-188 11-79 (80)
30 PRK06558 V-type ATP synthase s 99.4 5.8E-13 1.3E-17 109.8 8.9 68 125-192 14-81 (159)
31 PRK08344 V-type ATP synthase s 99.4 3E-12 6.5E-17 105.3 8.4 64 127-190 2-65 (157)
32 KOG0232|consensus 99.2 1.3E-11 2.8E-16 101.9 5.8 106 70-192 48-153 (156)
33 PRK09621 V-type ATP synthase s 99.2 4.4E-11 9.5E-16 97.1 8.4 66 126-191 3-68 (141)
34 TIGR01100 V_ATP_synt_C vacuola 99.1 2.9E-10 6.3E-15 89.0 8.1 66 127-192 2-67 (108)
35 KOG3025|consensus 99.1 2.8E-10 6E-15 91.2 6.0 71 120-191 61-135 (137)
36 TIGR01100 V_ATP_synt_C vacuola 99.0 8.2E-10 1.8E-14 86.4 5.3 69 68-154 39-107 (108)
37 PRK06649 V-type ATP synthase s 98.7 6.2E-08 1.3E-12 79.3 7.7 63 127-190 3-70 (143)
38 KOG0233|consensus 98.1 2.4E-07 5.3E-12 78.6 -2.5 68 125-192 40-107 (196)
39 KOG0232|consensus 95.5 0.066 1.4E-06 44.9 7.3 66 126-191 8-73 (156)
40 PF00137 ATP-synt_C: ATP synth 89.6 0.18 3.9E-06 35.6 1.3 36 52-94 29-64 (66)
41 COG0636 AtpE F0F1-type ATP syn 88.5 0.24 5.3E-06 36.7 1.4 43 51-96 35-77 (79)
42 PRK06251 V-type ATP synthase s 85.3 0.41 8.9E-06 37.5 1.1 38 51-95 62-99 (102)
43 PRK13471 F0F1 ATP synthase sub 82.3 0.67 1.5E-05 35.2 1.1 44 50-96 41-84 (85)
44 PRK13469 F0F1 ATP synthase sub 77.7 1 2.3E-05 33.4 0.9 43 50-95 35-77 (79)
45 CHL00061 atpH ATP synthase CF0 76.3 1.5 3.3E-05 32.8 1.4 43 51-96 35-77 (81)
46 PRK13468 F0F1 ATP synthase sub 68.7 2.6 5.7E-05 31.7 1.2 40 53-96 37-77 (82)
47 PRK07159 F0F1 ATP synthase sub 62.4 3.2 7E-05 32.5 0.6 42 51-95 57-98 (100)
48 PRK07354 F0F1 ATP synthase sub 61.0 9.1 0.0002 28.5 2.8 41 53-96 37-77 (81)
49 PRK06876 F0F1 ATP synthase sub 57.1 12 0.00027 27.9 2.9 29 68-96 48-76 (78)
50 TIGR01260 ATP_synt_c ATP synth 54.7 14 0.0003 26.0 2.7 27 68-94 30-56 (58)
51 MTH00222 ATP9 ATP synthase F0 53.5 16 0.00034 27.3 2.9 29 68-96 48-76 (77)
52 TIGR03322 alt_F1F0_F0_C altern 52.9 16 0.00035 27.7 3.0 28 69-96 50-78 (86)
53 PRK08482 F0F1 ATP synthase sub 50.7 17 0.00036 28.7 2.8 29 68-96 72-100 (105)
54 PRK07558 F0F1 ATP synthase sub 50.0 17 0.00037 26.8 2.6 28 68-95 46-73 (74)
55 PF12391 PCDO_beta_N: Protocat 38.5 14 0.00031 23.8 0.6 16 11-26 6-21 (36)
56 PRK13466 F0F1 ATP synthase sub 36.1 35 0.00076 24.7 2.4 25 68-92 40-64 (66)
57 PRK13464 F0F1 ATP synthase sub 35.7 42 0.0009 26.4 2.9 29 68-96 55-83 (101)
58 PF04156 IncA: IncA protein; 33.5 2.5E+02 0.0054 22.7 7.4 25 71-96 3-27 (191)
59 PRK13467 F0F1 ATP synthase sub 31.5 47 0.001 24.1 2.5 26 68-93 40-65 (66)
60 PF04284 DUF441: Protein of un 28.1 94 0.002 25.8 4.0 39 136-174 79-117 (140)
61 PRK07874 F0F1 ATP synthase sub 26.4 61 0.0013 24.4 2.4 25 68-92 55-79 (80)
No 1
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.87 E-value=7.7e-22 Score=162.13 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=101.1
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHL 130 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~l 130 (192)
+.|+..|+++ .+.|..|+..+||+++||+|++++++..-+. +++++.+++.++
T Consensus 43 ~~~~~a~~Pe-------~~~k~lI~~~l~e~~aIyGlvva~li~~~i~--------------------~~~~~~~g~~~l 95 (159)
T PRK06558 43 AAGLLTEEPE-------KFGKALILQLLPGTQGLYGFVIGFLIWQKIT--------------------PELSLAQGLAYF 95 (159)
T ss_pred HHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------------ccccHHHHHHHH
Confidence 3455667665 6888899999999999999998777554421 235677899999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 131 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 131 gAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
++||++|++++++|++||.++++++++++||||+|+++++..+|+|+++||+|+++++++++
T Consensus 96 ~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~ 157 (159)
T PRK06558 96 AACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNG 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999998875
No 2
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.85 E-value=5.1e-21 Score=157.01 Aligned_cols=127 Identities=24% Similarity=0.405 Sum_probs=105.7
Q ss_pred cccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHH
Q psy6109 49 RTSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFI 128 (192)
Q Consensus 49 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a 128 (192)
.+++|+..||.+ ++.|.+|+..++|+++||+|++++.+....+.....+++. + .++.++.+++.
T Consensus 27 ~aa~g~~~~~P~-------~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~--------~-~~~~~l~~g~~ 90 (157)
T PRK08344 27 SAAAGAVAEDEK-------NFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFA--------E-PDTINLGKALA 90 (157)
T ss_pred HHHHHHHHhCHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc--------c-ccchhHHHHHH
Confidence 346778888887 7999999999999999999998755554433222222221 0 14567788999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 129 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 129 ~lgAGLavGLa~iGSGIG~G~agsaai~avARqP-eLf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
++++|+++|++++++|++||+++++++++++||| ++|+++++..+|+|+++||+|+++++++.
T Consensus 91 ~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~ 154 (157)
T PRK08344 91 LLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLS 154 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999999999999998753
No 3
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.84 E-value=1.7e-20 Score=151.84 Aligned_cols=111 Identities=12% Similarity=0.152 Sum_probs=98.5
Q ss_pred ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109 50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH 129 (192)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~ 129 (192)
+++|+..||++ +|.|.++...+||+++||||++++++.--++ . +...++..
T Consensus 30 a~~G~~~e~p~-------~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~--------------------~--~~~~~~~~ 80 (141)
T PRK09621 30 ASHAVMSRIDE-------GHGKIIGLSAMPSSQSIYGLILMLLLNDAIK--------------------D--GKLSALSG 80 (141)
T ss_pred HHHHHHHcCch-------hhhhHHHHHHhHHHHHHHHHHHHHHHHHHcc--------------------c--chhHHHHH
Confidence 67888999988 7889999999999999999997777653321 0 12367899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 189 (192)
Q Consensus 130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLL 189 (192)
+++|+++|+++++||++||+++++++++++||||+|+|++++.+++|+++||+|++++++
T Consensus 81 l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 81 IAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986
No 4
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.82 E-value=7.8e-20 Score=150.65 Aligned_cols=119 Identities=26% Similarity=0.432 Sum_probs=101.9
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHL 130 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~l 130 (192)
+.++..||++ .++|..|...++|+++||++++++++....+.. +. .+..+..+++.++
T Consensus 37 ~~~~iar~Pe-------~~~~~li~~al~Ea~aIyglvia~lll~~~~~~--------------~~-~~~~~~~~~~~~l 94 (161)
T PRK14893 37 SVGAVAEDSD-------MFARGIIFSALPETQAIYGFLIAILLLVFSGLL--------------GG-GEGLSVTAGLVAI 94 (161)
T ss_pred HHHHHHcCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------CC-cccchHHHHHHHH
Confidence 4556667665 578899999999999999999887766652211 00 2356677899999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 131 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 131 gAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
++|+++|++++++|+++|.++++++++++||||.|.+++++.+++|+++||+|++++++++
T Consensus 95 gagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~ 155 (161)
T PRK14893 95 GAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMV 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998875
No 5
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.81 E-value=2e-19 Score=153.57 Aligned_cols=113 Identities=26% Similarity=0.431 Sum_probs=99.2
Q ss_pred ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109 50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH 129 (192)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~ 129 (192)
+++|+.+||++ +|.|.+|..+++|+++||++++++++..-... .+..+++.+
T Consensus 97 a~~~a~a~~p~-------~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~---------------------~~~~~g~~~ 148 (213)
T PRK06271 97 AGLGAVAEDDS-------IFGKAMVFSVLPETQAIYGLLVAILLLVGVFA---------------------SPGVETIAA 148 (213)
T ss_pred HHHHHHhcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------------cchhhHHHH
Confidence 46778888877 79999999999999999999987776543210 022358999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
+++|+++|++++ +|++||+++++++++++||||.+.+++++.+|+|+++||+++++++++|
T Consensus 149 ~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f 209 (213)
T PRK06271 149 LGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIML 209 (213)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999875
No 6
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.73 E-value=3e-17 Score=133.57 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=96.7
Q ss_pred ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109 50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH 129 (192)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~ 129 (192)
+++|...||..+++ =.+|. -+|...++-|++||||++.+++.. ++++.+++.+
T Consensus 29 Aa~Gv~~~~~~~~~--p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~------------------------~~s~~~g~~~ 81 (143)
T PRK06649 29 AAIGAWKRCYMQGK--PAPFL-LIVFVGAPLTQTIYGYILMNTLLG------------------------VMSQTNPWLL 81 (143)
T ss_pred HHHhHccHhhhcCC--chHHH-HHHHHhchhHHHHHHHHHHHHHHh------------------------hhhhhhHHHH
Confidence 66788887532111 12577 899999999999999986554421 4456689999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6109 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 190 (192)
Q Consensus 130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl 190 (192)
+++||++|++++.||+.||+++++++++++||||+|+++++..+|+|+++||+|++++++.
T Consensus 82 l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 82 LGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 7
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.71 E-value=5.5e-17 Score=138.62 Aligned_cols=109 Identities=27% Similarity=0.429 Sum_probs=95.0
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHL 130 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~l 130 (192)
+.++..||.+ .+.|-.|...++|+++||++++++++.... | ...++.++
T Consensus 27 ~~~~~ar~Pe-------~~~~~li~~al~e~~~Iyglvia~ll~~~~--------~----------------~~~g~~~l 75 (213)
T PRK06271 27 GAGVVAEDPN-------KFGTAIVFQALPQTQGLYGFLVAILILFVF--------K----------------TAPEWAML 75 (213)
T ss_pred HHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------c----------------cHhHHHHH
Confidence 4456667665 577889999999999999999887765541 1 02589999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 131 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 131 gAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
++|+++|++++ |++++|.++++++++++||||+|+++++..+|+|+++||||+++++++.
T Consensus 76 gagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~ 135 (213)
T PRK06271 76 AAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLV 135 (213)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 7899999999999999999999999999999999999999999999874
No 8
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.70 E-value=1e-16 Score=118.88 Aligned_cols=70 Identities=24% Similarity=0.477 Sum_probs=65.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 123 AALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 123 ~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
+..+.+++++|+++|++++|+|+|+|.++++++++++|||| ++++++++.+++|+++||+|+++++++|.
T Consensus 3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999998 78899999999999999999999998873
No 9
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.70 E-value=1.3e-16 Score=113.16 Aligned_cols=66 Identities=44% Similarity=0.768 Sum_probs=64.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
++++++|+++|++++++|+|+|.++++++++++||||+|++++++.+|+|+++||+|++++++++|
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999986
No 10
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.69 E-value=1.3e-16 Score=118.02 Aligned_cols=68 Identities=46% Similarity=0.789 Sum_probs=66.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
.++.++++|+++|++++|+|+++|+++++++++++|||| +|++++++.+|+|+++||+|+++++++|+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~ 77 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFA 77 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999 99999999999999999999999999874
No 11
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.68 E-value=2.6e-16 Score=117.25 Aligned_cols=69 Identities=35% Similarity=0.557 Sum_probs=64.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
..+++++++|+++|++++|+|+|+|.++++++++++|||| ++++++++++|+|+++||+|+++++++|.
T Consensus 5 ~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 5 ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999999999999999998 77889999999999999999999998863
No 12
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.68 E-value=2.3e-16 Score=118.81 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=66.8
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 121 KHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 121 ~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
.++..+++++++|+++|++++|+|+|||+++++++++++|||| ++++++++.+++|+++||+|+++++++|
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf 77 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIF 77 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999998 5899999999999999999999999876
No 13
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.68 E-value=2.8e-16 Score=117.34 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=66.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 121 KHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 121 ~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
.++..+++++++|+++|++++|+|+|||+++++++++++|||| ++++++++.+++|+++||+|+++++++|
T Consensus 2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllf 76 (82)
T PRK13468 2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLF 76 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999999998 6779999999999999999999999876
No 14
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.67 E-value=3.8e-16 Score=117.49 Aligned_cols=70 Identities=29% Similarity=0.478 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
++..+.+++++|+++|++++|+|+|+|.++++++++++|||| ++++++++.+++|+++||+|+++++++|
T Consensus 10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf 83 (85)
T PRK13471 10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILL 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999998 6679999999999999999999999886
No 15
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.67 E-value=4.6e-16 Score=115.60 Aligned_cols=69 Identities=33% Similarity=0.527 Sum_probs=64.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
..+++++++|+++|++++|+|+|+|.++++++++++|||| ++++++++.+|+|+++||+|+++++++|.
T Consensus 5 ~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 5 TSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999999999999999999 68888999999999999999999998763
No 16
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.66 E-value=7.7e-16 Score=113.96 Aligned_cols=70 Identities=34% Similarity=0.623 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
++..+++++++|+++ ++++|+|+|+|.++++++++++|||| ++++++++.+|+|+++||+|+++++++|.
T Consensus 5 ~~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 5 AFVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999 99999999999999999999999998 78888999999999999999999998873
No 17
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.66 E-value=6.7e-16 Score=119.61 Aligned_cols=71 Identities=27% Similarity=0.584 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
+...+.+++++|+++|++++|+|+|||.++++++++++||||++++++++.+|+|+++||+|+++++++|.
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567889999999999999999999999999999999999999999999999999999999999998763
No 18
>KOG0233|consensus
Probab=99.65 E-value=6.6e-17 Score=136.00 Aligned_cols=122 Identities=30% Similarity=0.482 Sum_probs=103.1
Q ss_pred ccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHHH
Q psy6109 52 AGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLG 131 (192)
Q Consensus 52 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~lg 131 (192)
.|+=.|-.|=+| |.+|+++|||.++||+++++++ ++.+-+.+++ ++.....++++|+..++
T Consensus 70 iGggVkAPRI~T-------KnLisIIfCEavaiyglI~Aiv----ls~kl~~~~~--------~~~y~~~n~~~gy~lF~ 130 (196)
T KOG0233|consen 70 IGGGVKAPRIKT-------KNLISIIFCEAVAIYGLIMAIV----LSTKLENVSS--------SKAYGAQNLYTGYALFG 130 (196)
T ss_pred ecCcccCCcccc-------cceEEEEeehHHHHHHHHHHHH----HHhhhccCCc--------hhhhccchhhhhHHHhh
Confidence 455567777444 6799999999999999986554 5444444442 23345677889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 132 AGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 132 AGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
+|+.+|++++-+|+++|.+|+++.-++|+||.+|.|.++...|..++++||+++++++..|
T Consensus 131 aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~K 191 (196)
T KOG0233|consen 131 AGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSK 191 (196)
T ss_pred hhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999998765
No 19
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.64 E-value=1e-15 Score=119.10 Aligned_cols=70 Identities=26% Similarity=0.483 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
++..+.+++++|+++|++++|+|+|+|+++++++++++|||| ++++++++.+++|+++||+|+++++++|
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf 99 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALY 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999998 8888999999999999999999999887
No 20
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.64 E-value=1.1e-15 Score=112.20 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=64.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
.+.+.+++|+++ ++++|+|+|+|+++++++++++|||| ++++++++.+|+|+++||+|+++++++|.
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa 74 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999 99999999999999999999999999 99999999999999999999999999874
No 21
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.64 E-value=1.4e-15 Score=112.62 Aligned_cols=70 Identities=29% Similarity=0.405 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
++..+.+++++|+++ ++++|+|+|+|+++++++++++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 3 ~~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 3 EILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678999999999 99999999999999999999999998 99999999999999999999999999873
No 22
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.61 E-value=3.9e-15 Score=115.28 Aligned_cols=69 Identities=17% Similarity=0.428 Sum_probs=65.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
..+...+++|+++|++++|+|+|+|+++++++++++|||| ++++++++.+++|+++||+++++++++|.
T Consensus 11 l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa 83 (101)
T PRK13464 11 LNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999998 99999999999999999999999998863
No 23
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.59 E-value=1.1e-14 Score=108.83 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=64.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
..+.+++++|+++|++++|+|+|+|+++++++++++|||| ++++++++.+++|++.+|++++.++++|.
T Consensus 5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567999999999999999999999999999999999998 99999999999999999999988887763
No 24
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.57 E-value=1.2e-14 Score=112.32 Aligned_cols=66 Identities=26% Similarity=0.381 Sum_probs=62.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
.++++++|+++ ++++|+|+|+|.++++++++++|||| ++++++++.+++|+++||+|+++++++|.
T Consensus 30 ~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 30 KAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred hHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999 99999999999999999999999998 78899999999999999999999999873
No 25
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.53 E-value=4e-14 Score=102.16 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109 133 GLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYL 189 (192)
Q Consensus 133 GLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLL 189 (192)
++++|++++|+|+|+|+++++++++++|||| ++++++++.+++|+++||+|++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999998 99999999999999999999999874
No 26
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.52 E-value=4.3e-14 Score=102.11 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109 134 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYL 189 (192)
Q Consensus 134 LavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLL 189 (192)
++.|++++|+|+|+|+++++++++++|||| ++++++++.+++|+++||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677789999999999999999999998 99999999999999999999999976
No 27
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.49 E-value=6.7e-14 Score=98.53 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 139 SGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 139 a~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
+++|+|+|+|.++++++++++|||| ++++++++.+|+|+++||+++++++++|.
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa 58 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3679999999999999999999998 69999999999999999999999999874
No 28
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.48 E-value=1.6e-13 Score=113.38 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
+...+++++++|+++|++++|+++|+|+++++++++++||||.+++++++.+++|+++||+|++++++++
T Consensus 5 ~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~ 74 (161)
T PRK14893 5 ALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLV 74 (161)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4446789999999999999999999999999999999999999999999999999999999999999876
No 29
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.47 E-value=1.9e-13 Score=101.96 Aligned_cols=65 Identities=31% Similarity=0.550 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109 120 AKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIY 188 (192)
Q Consensus 120 ~~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiL 188 (192)
+.++..+.+.+++| ++++|+|+|+|+++++++++++|||| ++++++++.+++|+++||+|+++++
T Consensus 11 ~~~~~~~~~~ig~G----laaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 11 TETTFTGLGAVGYG----LAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666655 55689999999999999999999998 9999999999999999999999987
No 30
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.43 E-value=5.8e-13 Score=109.75 Aligned_cols=68 Identities=29% Similarity=0.595 Sum_probs=65.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
..+.++++++++|++++||++|+|.++++++++.+||||.++|.++..+++|+++||||++++++++|
T Consensus 14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~ 81 (159)
T PRK06558 14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999998764
No 31
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.35 E-value=3e-12 Score=105.34 Aligned_cols=64 Identities=30% Similarity=0.596 Sum_probs=61.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6109 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 190 (192)
Q Consensus 127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl 190 (192)
+..+++++++|++++|+++|+|.++++++++.+||||+++++++..+++|+++||||+++++++
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~ 65 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLIL 65 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999987653
No 32
>KOG0232|consensus
Probab=99.23 E-value=1.3e-11 Score=101.94 Aligned_cols=106 Identities=58% Similarity=0.837 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6109 70 RQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGI 149 (192)
Q Consensus 70 ~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~lgAGLavGLa~iGSGIG~G~ 149 (192)
-+.+|+++++-...||+++.+.++.--++ | . .+.++.++++..+++|+.+|++++++|+++|.
T Consensus 48 mkSiiPvVmAgii~iYglv~av~i~g~i~-------~---------~-~~~~~l~~g~i~lsagl~vgl~~~~ag~aigi 110 (156)
T KOG0232|consen 48 MKSIIPVVMAGIITIYGLVVAVVISGDIG-------P---------K-GTAYSLFTGFIVLSAGLAVGLAGLSAGLAIGI 110 (156)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcccccC-------C---------c-ccccchhhHHHHHHHHHHhhhcccCCCcCcCc
Confidence 48999999999999999965444332221 1 0 12267889999999999999999999999999
Q ss_pred HHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 150 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 150 agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
++.+.....+|||++|..+++.++|.|.+++|||++++.+.++
T Consensus 111 ~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~ 153 (156)
T KOG0232|consen 111 VGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTV 153 (156)
T ss_pred cccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999988764
No 33
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.22 E-value=4.4e-11 Score=97.11 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=62.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
.+.+++++++++++++||++|++.+|+++.....|+||.|.+.++..+++|+++||||+++++++.
T Consensus 3 ~~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~ 68 (141)
T PRK09621 3 DMSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLND 68 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 366799999999999999999999999999999999999999999999999999999999999875
No 34
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.11 E-value=2.9e-10 Score=88.97 Aligned_cols=66 Identities=27% Similarity=0.460 Sum_probs=60.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
+.+++++++++++++||++|++.++.+-..+-.++||++.|.+|..+|+|+++||||+++++++.|
T Consensus 2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~ 67 (108)
T TIGR01100 2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGS 67 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 568899999999999999999999977777667779999999999999999999999999998864
No 35
>KOG3025|consensus
Probab=99.06 E-value=2.8e-10 Score=91.24 Aligned_cols=71 Identities=30% Similarity=0.421 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 120 AKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 120 ~~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
+.++..+.+++|+|+++ ++..|+|.|+|.+.++.+.+.+|||+ +|...++++++.|++++|+|.++|+++|
T Consensus 61 s~~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilf 135 (137)
T KOG3025|consen 61 SRDIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 135 (137)
T ss_pred HHHHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45677899999999998 88889999999999999999999996 8999999999999999999999999987
No 36
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=98.97 E-value=8.2e-10 Score=86.44 Aligned_cols=69 Identities=45% Similarity=0.621 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAI 147 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~lgAGLavGLa~iGSGIG~ 147 (192)
++.|.+|+++|||+++||+|++++++..-++. .+++++.+++.++++||++|++++.||+.|
T Consensus 39 ~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~------------------~~~~s~~~g~~~~~aGL~vGl~~l~sgi~~ 100 (108)
T TIGR01100 39 LIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKP------------------KSNYSLYKGFIHLGAGLAVGLSGLAAGFAI 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------------------ccccCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987776554321 123678899999999999999999999999
Q ss_pred HHHHHHH
Q psy6109 148 GIVGDAG 154 (192)
Q Consensus 148 G~agsaa 154 (192)
|.++++.
T Consensus 101 Gi~G~~g 107 (108)
T TIGR01100 101 GIVGDAG 107 (108)
T ss_pred cccccCC
Confidence 9998754
No 37
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=98.69 E-value=6.2e-08 Score=79.31 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=59.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6109 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ-----QPRLFVGMILILIFAEVLGLYGLIVAIYLY 190 (192)
Q Consensus 127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avAR-----qPeLf~k~iIg~Af~EaiaIyGLVVAiLLl 190 (192)
+.++|++++++++++||++|+|.+|.++...+.+ |||.|. .++..+++-+++||||+++++++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~ 70 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLL 70 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999998 999998 99999999999999999999876
No 38
>KOG0233|consensus
Probab=98.09 E-value=2.4e-07 Score=78.61 Aligned_cols=68 Identities=35% Similarity=0.584 Sum_probs=64.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
.-|+.+|.+++++++.+|+++|+=..|++-+++--|-|++.+|.++...|||+.+|||+++++++..|
T Consensus 40 ~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~k 107 (196)
T KOG0233|consen 40 YMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTK 107 (196)
T ss_pred hHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhh
Confidence 35889999999999999999999999999999999999999999999999999999999999998765
No 39
>KOG0232|consensus
Probab=95.49 E-value=0.066 Score=44.86 Aligned_cols=66 Identities=27% Similarity=0.446 Sum_probs=58.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
-+...+++.++-++++|++.|....+..-...--.+||+-.|.++-..++-.++|||++++.++..
T Consensus 8 ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g 73 (156)
T KOG0232|consen 8 FFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISG 73 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 356778888888999999999999998888888899999999999999999999999998887653
No 40
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=89.60 E-value=0.18 Score=35.59 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=29.2
Q ss_pred ccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q psy6109 52 AGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLG 94 (192)
Q Consensus 52 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~ 94 (192)
.++..|+++ .+.+-.|..+++|+++||+++.++++.
T Consensus 29 ~~~~a~~p~-------~~~~~li~~~~~E~~~i~glv~~~~l~ 64 (66)
T PF00137_consen 29 IGAIARQPE-------LFTKMLIGAAFIEALGIYGLVVALLLL 64 (66)
T ss_dssp HHHHHHSGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc-------cchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345556665 689999999999999999999877754
No 41
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=88.52 E-value=0.24 Score=36.72 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=34.7
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
...+++||++=.++ .|.+-.+...|+|+.++|++++++++.+.
T Consensus 35 ~~~~~Ar~P~~~~~---l~~~~~i~~~l~E~~~i~~lvialll~f~ 77 (79)
T COG0636 35 AVEAVARQPEAAGK---LFGKMFIGLALVEALGIYGLVIALLLLFA 77 (79)
T ss_pred HHHHHHcCcchhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888884442 68888999999999999999988876654
No 42
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=85.28 E-value=0.41 Score=37.50 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=29.9
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGL 95 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~ 95 (192)
+.++..|+++ .+.+.+|...++|+.+||+|++++++.+
T Consensus 62 ai~aiAr~Pe-------~~g~~ii~~al~Ea~aIyglvVa~lLlf 99 (102)
T PRK06251 62 GIGVLTERRD-------MFGTVLIFVAIGEGIAVYGILFAVLMLF 99 (102)
T ss_pred HHHHHHcChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666554 6888999999999999999998887653
No 43
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=82.28 E-value=0.67 Score=35.16 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=32.7
Q ss_pred ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
.+.++.+|+..-.. |-+.+-.|...+.|+.+||+|++++++.+.
T Consensus 41 ~a~~avaRqPe~~g---~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 41 HAMDAMARQPEMVG---TITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHcChHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777755332 146677899999999999999988877654
No 44
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=77.68 E-value=1 Score=33.41 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=30.1
Q ss_pred ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6109 50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGL 95 (192)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~ 95 (192)
.+.++.+|+.+-.. |-+..-.|..+|.|+.+||++++++++.+
T Consensus 35 ~a~~a~arqPe~~g---~l~~~~~i~~al~Eal~i~glvva~illf 77 (79)
T PRK13469 35 KAVEAVGRQPEASG---KIMSTMLLGAALAEATAIYGLVIAIILLF 77 (79)
T ss_pred HHHHHHHcCchHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566676654222 13455678899999999999998877654
No 45
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=76.33 E-value=1.5 Score=32.83 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=31.1
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
+..+.+|+.+-+.+ -+++-.|...|.|+.+||++++++++.+.
T Consensus 35 a~~aiarqPe~~~~---l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 35 AVEGIARQPEAEGK---IRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHcCchHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666653321 34567899999999999999998887665
No 46
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=68.74 E-value=2.6 Score=31.65 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=28.0
Q ss_pred cceeecCCCCcchHHHHHHHHH-HHHHHhhcCchhhHHHHHHHHh
Q psy6109 53 GAYCKDERGSTTSWQKLRQQSI-ADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 53 ~a~~~~~~~~~~~~~~~~~~~i-~~~~~e~~~I~g~i~~iil~~~ 96 (192)
.+.+|+..-.. ++++.++ ...+.|+.+||++++++++.+.
T Consensus 37 ~~iaRqPe~~g----~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 37 DAIAQQPDAAG----TISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566655333 3555554 5899999999999998886655
No 47
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=62.40 E-value=3.2 Score=32.47 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=30.4
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGL 95 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~ 95 (192)
+..+.+|+.+-+. +-+.+-.|...+.|+.+||++++++++.+
T Consensus 57 a~eaiARqPea~~---~l~~~~~ig~Al~EalaI~~lvia~lllf 98 (100)
T PRK07159 57 AVEAIARNPEAQK---QVFKLLFIGSAISETSSIYALLVAFILIF 98 (100)
T ss_pred HHHHHHhChHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666665333 13556778899999999999999887654
No 48
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=61.04 E-value=9.1 Score=28.53 Aligned_cols=41 Identities=7% Similarity=-0.055 Sum_probs=29.2
Q ss_pred cceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 53 GAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 53 ~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
.+.+|+.+-.. +-+.+-.|...|.|+.+||++++++++.+.
T Consensus 37 ~~iArqPe~~~---~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 37 EGIARQPEAEG---KIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHcCcHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555554222 135667899999999999999998887554
No 49
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=57.09 E-value=12 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
-+.+-.|...+.|+.+||++++++++.+.
T Consensus 48 l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 48 LQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678899999999999999998887654
No 50
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=54.65 E-value=14 Score=26.02 Aligned_cols=27 Identities=19% Similarity=0.017 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHH
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRLG 94 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil~ 94 (192)
-+..-.|...+.|+.+||++++++++.
T Consensus 30 l~~~~~ig~al~Ea~~i~~lvia~lll 56 (58)
T TIGR01260 30 LRTTMFIGMGLVDAIPMIAVVIALILL 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788999999999999999887754
No 51
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=53.49 E-value=16 Score=27.31 Aligned_cols=29 Identities=3% Similarity=-0.111 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
-+.+-.|-..+.|..+||++.+++++.+.
T Consensus 48 l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 48 LFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677899999999999999998887654
No 52
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=52.93 E-value=16 Score=27.72 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=22.4
Q ss_pred HHHHH-HHHHHHhhcCchhhHHHHHHHHh
Q psy6109 69 LRQQS-IADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 69 ~~~~~-i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
+++.+ |...+.|+.+||++++++++.+.
T Consensus 50 i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 50 ITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 44999999999999999887665
No 53
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=50.66 E-value=17 Score=28.67 Aligned_cols=29 Identities=14% Similarity=-0.077 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
-+.+-.|...+.|+.+||++++++++.+.
T Consensus 72 i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 72 LMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667899999999999999998887776
No 54
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=49.98 E-value=17 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRLGL 95 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil~~ 95 (192)
-+.+-.|-..|.|+.+||++++++++.+
T Consensus 46 l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 46 QFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999998877654
No 55
>PF12391 PCDO_beta_N: Protocatechuate 3,4-dioxygenase beta subunit N terminal; InterPro: IPR024756 This entry represents the N-terminal domain of the beta subunit of protocatechuate 3,4-dioxidase. Protocatechuate 3,4-dioxidase utilises a mononuclear, non-heme Fe3+ centre to catalyse metabolic cellular reactions []. This domain is found in bacteria, and is approximately 40 amino acids in length. It is found in association with PF00775 from PFAM. There are two completely conserved residues (Y and R) that may be functionally important. ; PDB: 1EOA_B 2BUY_B 2BUU_B 1EOC_B 2BUR_B 1EO9_B 2BUX_B 1EOB_B 2BUW_B 2BV0_B ....
Probab=38.50 E-value=14 Score=23.83 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=9.6
Q ss_pred ccccCcccCCcccCCC
Q psy6109 11 GAVQEPVKYPAYKSST 26 (192)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (192)
...|-|..||.||||-
T Consensus 6 ~~~hPp~~~p~YrSsv 21 (36)
T PF12391_consen 6 RGWHPPYLYPPYRSSV 21 (36)
T ss_dssp CCCS--S--TTSGGGC
T ss_pred cccCCcccCCcccccc
Confidence 4578899999999974
No 56
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=36.11 E-value=35 Score=24.74 Aligned_cols=25 Identities=8% Similarity=-0.113 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHH
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLR 92 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~ii 92 (192)
-+.+-.|...+.|..+||+++++++
T Consensus 40 l~~~~~ig~al~Ea~~i~alvia~l 64 (66)
T PRK13466 40 LMAGVFLGVAFIEGTFFVTLAMTFV 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999987665
No 57
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=35.69 E-value=42 Score=26.44 Aligned_cols=29 Identities=7% Similarity=-0.032 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
-+++-.|-..+.|..+||++.+++++.+.
T Consensus 55 l~t~m~IG~AliEa~ai~alvia~lllFa 83 (101)
T PRK13464 55 LLGRMFIVAAFVDAFAAISIAIGFLVLYA 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777899999999999999998887777
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.48 E-value=2.5e+02 Score=22.67 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 71 QQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 71 ~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
+..|..+.+-+.++- ++++.+.+++
T Consensus 3 ~~~i~~i~~iilgil-li~~gI~~Lv 27 (191)
T PF04156_consen 3 KQRIISIILIILGIL-LIASGIAALV 27 (191)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344555555556655 4444444444
No 59
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=31.49 E-value=47 Score=24.14 Aligned_cols=26 Identities=8% Similarity=-0.141 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHH
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLRL 93 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~iil 93 (192)
-.+.-.|-..+.|..+||++++++++
T Consensus 40 i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 40 LRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667889999999999999887664
No 60
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=28.13 E-value=94 Score=25.75 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHH
Q psy6109 136 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIF 174 (192)
Q Consensus 136 vGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af 174 (192)
.|+.++.+|+-+...++..++-+..|||+...++++-.+
T Consensus 79 ~g~~Ai~~Gilva~l~g~Gv~Ll~~~P~v~~gLviGTIi 117 (140)
T PF04284_consen 79 KGIIAILAGILVAWLGGRGVNLLKVQPQVIVGLVIGTII 117 (140)
T ss_pred HHHHHHHHHHHHHHHhccChHHHccCChhhHHHHHHHHH
Confidence 456667788888899999999999999987777776543
No 61
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=26.42 E-value=61 Score=24.41 Aligned_cols=25 Identities=4% Similarity=-0.183 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHH
Q psy6109 68 KLRQQSIADQLAEVSPTCPTRKTLR 92 (192)
Q Consensus 68 ~~~~~~i~~~~~e~~~I~g~i~~ii 92 (192)
-+++-.|...|.|..+||+++++++
T Consensus 55 l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 55 LRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788999999999999987664
Done!