Query psy6109
Match_columns 192
No_of_seqs 162 out of 1036
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 17:49:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 99.9 8.1E-23 2.8E-27 166.1 9.8 116 50-192 40-155 (156)
2 2xqu_A C15_RING, ATP synthase 99.7 1.6E-17 5.4E-22 122.4 9.6 71 122-192 4-78 (82)
3 1wu0_A ATP synthase C chain; A 99.7 4.2E-17 1.4E-21 117.5 8.1 67 126-192 2-72 (72)
4 2x2v_A ATP synthase subunit C; 99.7 9.6E-17 3.3E-21 114.8 9.2 63 129-191 3-69 (69)
5 2wgm_A ATP synthase subunit C, 99.7 1.3E-16 4.6E-21 119.2 9.2 71 121-192 7-81 (89)
6 1a91_A F1FO ATPase subunit C; 99.7 3E-16 1E-20 115.0 10.1 66 126-191 7-76 (79)
7 4f4s_A ATP synthase subunit 9, 99.6 4.1E-16 1.4E-20 114.3 8.7 69 122-191 2-74 (76)
8 2xnd_J ATP synthase lipid-bind 99.6 2E-16 6.9E-21 114.0 1.4 65 126-191 4-72 (72)
9 2bl2_A V-type sodium ATP synth 99.4 5.2E-13 1.8E-17 108.4 8.8 68 125-192 12-79 (156)
10 1wu0_A ATP synthase C chain; A 90.0 0.12 4E-06 36.7 1.6 41 51-94 30-70 (72)
11 1a91_A F1FO ATPase subunit C; 88.1 0.2 6.9E-06 36.1 1.8 43 51-96 35-77 (79)
12 2x2v_A ATP synthase subunit C; 87.9 0.14 4.6E-06 36.0 0.7 41 51-94 28-68 (69)
13 2xqu_A C15_RING, ATP synthase 87.6 0.12 4.2E-06 37.4 0.4 43 51-96 36-78 (82)
14 2wgm_A ATP synthase subunit C, 84.9 0.21 7.1E-06 36.8 0.4 43 51-96 39-81 (89)
15 2xnd_J ATP synthase lipid-bind 83.2 0.21 7E-06 35.4 -0.3 40 51-93 31-70 (72)
16 4f4s_A ATP synthase subunit 9, 65.1 3.9 0.00013 29.5 2.5 38 55-95 37-74 (76)
17 2jf1_T Integrin beta-2 subunit 30.9 17 0.00058 22.1 1.0 19 17-35 15-33 (35)
18 1m8o_B Platele integrin BETA3 23.0 35 0.0012 21.9 1.5 19 17-35 27-45 (47)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.88 E-value=8.1e-23 Score=166.10 Aligned_cols=116 Identities=24% Similarity=0.347 Sum_probs=103.7
Q ss_pred ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109 50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH 129 (192)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~ 129 (192)
+.+|+..||++ .+.|.+|++.+||+++||++++++++...++ .+.++.+++++
T Consensus 40 a~~g~~~~~P~-------~~~k~li~~~l~e~~~IYGlvva~li~~~l~--------------------~~~~~~~g~~~ 92 (156)
T 2bl2_A 40 AAAALTTSQPE-------KFGQALILQLLPGTQGLYGFVIAFLIFINLG--------------------SDMSVVQGLNF 92 (156)
T ss_dssp HHHHHHTTCGG-------GHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC--------------------TTCCHHHHHHH
T ss_pred HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------cchhHHHHHHH
Confidence 45677778877 6889999999999999999998888766432 12456789999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
+++|+++|++++|+|++||+++++++++++||||++++++++.+|+|+++||+|+++++++++
T Consensus 93 igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 93 LGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 2
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.73 E-value=1.6e-17 Score=122.36 Aligned_cols=71 Identities=32% Similarity=0.523 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
++..+++++++|+++|++++|+|+|+|+++++++++++|||| +|++++++.+|+|+++||+|+++++++|.
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~ 78 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA 78 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999999 78889999999999999999999998763
No 3
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.70 E-value=4.2e-17 Score=117.50 Aligned_cols=67 Identities=27% Similarity=0.476 Sum_probs=63.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
+++++++|+++|++++|+|+|+|+++++++++++|||| +|++++++.+|+|+++||+|+++++++|.
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~ 72 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR 72 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999 77779999999999999999999999873
No 4
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.69 E-value=9.6e-17 Score=114.78 Aligned_cols=63 Identities=27% Similarity=0.510 Sum_probs=60.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 129 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 129 ~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
++++|+++|++++|+|+|+|+++++++++++|||| +|++++++.+|+|+++||+|+++++++|
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999 6677999999999999999999999875
No 5
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.68 E-value=1.3e-16 Score=119.16 Aligned_cols=71 Identities=31% Similarity=0.517 Sum_probs=67.0
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 121 KHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 121 ~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
.++.++++++++|+++ ++++|+|+|+|+++++++++++|||| +|++++++.+|+|+++||+|+++++++|.
T Consensus 7 ~~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 81 (89)
T 2wgm_A 7 KTVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA 81 (89)
T ss_dssp HHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999 99999999999999999999999999 69999999999999999999999998763
No 6
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.67 E-value=3e-16 Score=115.01 Aligned_cols=66 Identities=20% Similarity=0.482 Sum_probs=62.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
.+..+++++++|++++|+|+|+|+++++++++++|||| +|++++++.+|+|+++||+|+++++++|
T Consensus 7 ~m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf 76 (79)
T 1a91_A 7 DLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMF 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999 8889999999999999999999999876
No 7
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.65 E-value=4.1e-16 Score=114.35 Aligned_cols=69 Identities=32% Similarity=0.474 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
++..+.+++++|+++ ++.+|+|+|+|+++++++++++|||| +|+++++++++.|+++||+|+++++++|
T Consensus 2 ~lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllF 74 (76)
T 4f4s_A 2 QLVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF 74 (76)
T ss_dssp HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999 99999999999999999999999997 9999999999999999999999999987
No 8
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.59 E-value=2e-16 Score=114.05 Aligned_cols=65 Identities=32% Similarity=0.450 Sum_probs=61.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT 191 (192)
Q Consensus 126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~ 191 (192)
+++++++|+++ ++++|+|+|+|+++++++++++|||| +|++++++.+|+|+++||+|+++++++|
T Consensus 4 ~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf 72 (72)
T 2xnd_J 4 AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72)
T ss_dssp TTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788999999 99999999999999999999999998 7889999999999999999999999875
No 9
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.41 E-value=5.2e-13 Score=108.42 Aligned_cols=68 Identities=26% Similarity=0.540 Sum_probs=65.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 192 (192)
Q Consensus 125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k 192 (192)
..+.+++++++++++++|+++|++.++++++++.+||||+++|+++..+|+|+++||||+++++++++
T Consensus 12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~ 79 (156)
T 2bl2_A 12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFIN 79 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999999999999999999999999998764
No 10
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=89.99 E-value=0.12 Score=36.66 Aligned_cols=41 Identities=10% Similarity=-0.056 Sum_probs=31.9
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLG 94 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~ 94 (192)
+.++++|+++.+. |-+.+.+|...|+|+.+||++++++++.
T Consensus 30 ~~~~~arqPe~~~---~l~~~~ii~~al~Ea~ai~~lvia~lll 70 (72)
T 1wu0_A 30 TIEGIARQPELRP---VLQTTMFIGVALVEALPIIGVVFSFIYL 70 (72)
T ss_dssp HHHHHHTSSTTTT---HHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777544 2477789999999999999999888764
No 11
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=88.14 E-value=0.2 Score=36.10 Aligned_cols=43 Identities=12% Similarity=-0.065 Sum_probs=33.3
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
+..+++|+++-+. |-+.+..|..+|+|+.+||+|++++++.+.
T Consensus 35 ~i~~~arqPe~~~---~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 35 FLEGAARQPDLIP---LLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHTTSCSSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777444 246678999999999999999998887654
No 12
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=87.92 E-value=0.14 Score=36.05 Aligned_cols=41 Identities=15% Similarity=0.004 Sum_probs=30.5
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLG 94 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~ 94 (192)
+..+++|+++-+. |-+.+..|..+|+|+.+||++++++++.
T Consensus 28 ~i~~~arqPe~~~---~l~~~~ii~~al~Ea~ai~~lvia~lll 68 (69)
T 2x2v_A 28 TIEGTTRQPELRG---TLQTLMFIGVPLAEAVPIIAIVISLLIL 68 (69)
T ss_dssp HHHHHHHCGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677766322 2456689999999999999999887753
No 13
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=87.64 E-value=0.12 Score=37.38 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=33.2
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
+.++++|+++-+. |-+.+.+|..+|+|+.+||++++++++.+.
T Consensus 36 ~i~a~arqPe~~~---~l~~~~ii~~al~Ea~ai~glvia~ll~f~ 78 (82)
T 2xqu_A 36 AVEGIARQPEAEG---KIRGTLLLSLAFMEALTIYGLVVALVLLFA 78 (82)
T ss_dssp HHHHHHHCGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCchHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777776333 247788999999999999999998887654
No 14
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=84.94 E-value=0.21 Score=36.80 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=33.6
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN 96 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~ 96 (192)
+..+++|+.+-+. |-+.+..|..+|+|+.+||++++++++.+.
T Consensus 39 ai~a~arqPe~~~---~l~~~~ii~~al~Ea~ai~glvia~lllf~ 81 (89)
T 2wgm_A 39 AVESVARQPEAKG---DIISTMVLGQAVAESTGIYSLVIALILLYA 81 (89)
T ss_dssp HHHHHHHCGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCchHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777776433 248889999999999999999998887654
No 15
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=83.25 E-value=0.21 Score=35.43 Aligned_cols=40 Identities=8% Similarity=-0.039 Sum_probs=30.0
Q ss_pred cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHH
Q psy6109 51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRL 93 (192)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil 93 (192)
+..+++|+++-+.. -+.+..|...|+|+.++|+|++++++
T Consensus 31 ~i~~~arqPe~~~~---l~~~~~i~~al~Ea~~i~~lvia~ll 70 (72)
T 2xnd_J 31 LIIGYARNPSLKQQ---LFSYAILGFALSEAMGLFCLMVAFLI 70 (72)
T ss_dssp HHHHSSSCSCCCCC---CSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566676653331 36778999999999999999987765
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=65.14 E-value=3.9 Score=29.55 Aligned_cols=38 Identities=8% Similarity=-0.037 Sum_probs=29.1
Q ss_pred eeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6109 55 YCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGL 95 (192)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~ 95 (192)
|.++..-+. |-|+..++-.++.|..++|++.+++++.+
T Consensus 37 ~aRnP~~~~---~l~~~~ilG~Al~Ea~glf~LvvA~lllF 74 (76)
T 4f4s_A 37 VSRNPSIKD---TVFPMAILGFALSEATGLFCLMVSFLLLF 74 (76)
T ss_dssp HHHCGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcChhHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 46788999999999999999999888764
No 17
>2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion, transmembrane, acetylation, polymorphism, cytoskeleton, glycoprotein, filamin, complex; 2.2A {Homo sapiens}
Probab=30.91 E-value=17 Score=22.07 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.3
Q ss_pred ccCCcccCCCcccccCcch
Q psy6109 17 VKYPAYKSSTGTCEIPSIQ 35 (192)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ 35 (192)
-..|-||+.|.|++.|+.+
T Consensus 15 ~~NPlYk~~ttt~~np~~~ 33 (35)
T 2jf1_T 15 NDNPLFKSATTTVMNPKFA 33 (35)
T ss_pred cCCCCccCcceeeeCCccc
Confidence 5689999999999988754
No 18
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=23.04 E-value=35 Score=21.94 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.0
Q ss_pred ccCCcccCCCcccccCcch
Q psy6109 17 VKYPAYKSSTGTCEIPSIQ 35 (192)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ 35 (192)
-..|-||+.|.|+..|..+
T Consensus 27 ~~NPlYk~~tttf~np~~~ 45 (47)
T 1m8o_B 27 ANNPLYKEATSTFTNITYR 45 (47)
T ss_dssp CCCCCSSSSSCCCTTSCCC
T ss_pred ccCCCccCcceeeeCCccc
Confidence 4579999999999988753
Done!