RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6109
         (192 letters)



>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 68.8 bits (169), Expect = 1e-16
 Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGL 180
           +  +++ A + +G + + A   IGI+G   + G A+QP     L     +++   + + +
Sbjct: 6   MDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPM 65

Query: 181 YGLIVAIYL 189
             + + +Y+
Sbjct: 66  IAVGLGLYV 74


>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux
           transporter AcrB transmembrane domain {Escherichia coli
           [TaxId: 562]}
          Length = 222

 Score = 25.8 bits (56), Expect = 3.3
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 117 LRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIF 174
           LR      + ++ +  G+A  F  L + F       A          + V + L  ++
Sbjct: 23  LRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDSGNQAPSLYAISL--IVVFLCLAALY 78


>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 24.4 bits (52), Expect = 9.7
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 102 DPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIV 150
           D         P G         ALGFI    G+ +G +   +G  +G++
Sbjct: 127 DKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLI 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 671,260
Number of extensions: 28553
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 5
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)