BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6110
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLNQAP LHRFY +NS ++HGGLD+ + V GQ+
Sbjct: 2 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 60
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
+IH + NF +CH KIR V
Sbjct: 61 EIHRKVMSQNFTNCHTKIRHV 81
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 7/74 (9%)
Query: 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67
S VGREFVRQYYTLLN+AP HLHRFY+ NS +IHG E+K VVGQ +IH IQ
Sbjct: 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQREIHNRIQ 54
Query: 68 QLNFRDCHAKIRQV 81
QLNF DCHAKI QV
Sbjct: 55 QLNFNDCHAKISQV 68
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.2 bits (69), Expect = 0.33, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 70 NFRDCHAKIRQVPVTQQFPTV 90
RDC + R V + P+V
Sbjct: 251 FERDCSVQRRHQKVVEVAPSV 271
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.2 bits (69), Expect = 0.33, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 70 NFRDCHAKIRQVPVTQQFPTV 90
RDC + R V + P+V
Sbjct: 251 FERDCSVQRRHQKVVEVAPSV 271
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.2 bits (69), Expect = 0.34, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 70 NFRDCHAKIRQVPVTQQFPTV 90
RDC + R V + P+V
Sbjct: 251 FERDCSVQRRHQKVVEVAPSV 271
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.2 bits (69), Expect = 0.34, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 193 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 250
Query: 70 NFRDCHAKIRQVPVTQQFPTV 90
RDC + R V + P+V
Sbjct: 251 FERDCSVQRRHQKVVEVAPSV 271
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 31.2 bits (69), Expect = 0.34, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 170 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 227
Query: 70 NFRDCHAKIRQVPVTQQFPTV 90
RDC + R V + P+V
Sbjct: 228 FERDCSVQRRHQKVVEVAPSV 248
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 31.2 bits (69), Expect = 0.35, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 170 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 227
Query: 70 NFRDCHAKIRQVPVTQQFPTV 90
RDC + R V + P+V
Sbjct: 228 FERDCSVQRRHQKVVEVAPSV 248
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 31.2 bits (69), Expect = 0.35, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 GREFVRQYYTL---LNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
G VR+ L ++A + + + + ++I +D P QV+G E H +I L
Sbjct: 170 GMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDE--HGNIVHL 227
Query: 70 NFRDCHAKIRQVPVTQQFPTV 90
RDC + R V + P+V
Sbjct: 228 FERDCSVQRRHQKVVEVAPSV 248
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin
Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna
Nuclear Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin
Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna
Export Factor
Length = 140
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 13 GREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
EFV YYT +++ L R Y + + G V GQE + E + L
Sbjct: 17 AEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEML 65
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 VMEVTPSPQCVG--REFVRQYYTLLNQAPAHLHRFYSENSLF 41
V +T SP+ + R+F+ Q Y ++ AP H+ F + LF
Sbjct: 44 VSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLF 85
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 3 MEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQI 62
+ + P +G++FV+ YY L Y S+ E Q GQ I
Sbjct: 5 INLNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTW--------EDTQFQGQANI 56
Query: 63 HEHIQQLNFRDCHAKIRQV 81
LNF+ +I +V
Sbjct: 57 VNKFNSLNFQRVQFEITRV 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,446,051
Number of Sequences: 62578
Number of extensions: 142529
Number of successful extensions: 273
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 13
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 48 (23.1 bits)