BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6110
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLN+AP +LHRFY NS ++HGG+DA + + V GQ
Sbjct: 1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
IH + LNF +CH KIR V
Sbjct: 60 DIHHKVLSLNFSECHTKIRHV 80
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLN+AP +LHRFY NS ++HGG+DA + + V GQ
Sbjct: 1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
IH + LNF +CH KIR V
Sbjct: 60 DIHHKVLSLNFSECHTKIRHV 80
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLN+AP +LHRFY NS ++HGG+DA + + V GQ
Sbjct: 1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
IH + LNF +CH KIR V
Sbjct: 60 DIHHKVLSLNFSECHTKIRHV 80
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLNQAP LHRFY +NS ++HGGLD+ + V GQ+
Sbjct: 1 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 59
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
+IH + NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLNQAP LHRFY +NS ++HGGLD+ + V GQ+
Sbjct: 1 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 59
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
+IH + NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLNQAP LHRFY +NS ++HGGLD+ + V GQ+
Sbjct: 1 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 59
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
+IH + NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLNQAP LHRFY +NS + HGGLD+ + V GQ+
Sbjct: 1 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQK 59
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
+IH + NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
+G FV++YYT LN+ P LH FY++ S IHG GQ++IH I L+F
Sbjct: 18 IGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGD---EGESISLCHGQQEIHNKILDLDF 74
Query: 72 RDCHAKIRQV 81
++C I V
Sbjct: 75 QNCKVLISNV 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,401,915
Number of Sequences: 539616
Number of extensions: 3745495
Number of successful extensions: 56415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 1551
Number of HSP's that attempted gapping in prelim test: 29497
Number of HSP's gapped (non-prelim): 14456
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)