Query psy6110
Match_columns 174
No_of_seqs 118 out of 504
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:52:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2104|consensus 99.9 5.5E-26 1.2E-30 175.7 7.7 90 6-103 3-94 (126)
2 KOG0116|consensus 99.9 1.2E-25 2.5E-30 204.1 8.8 115 2-121 7-123 (419)
3 cd00780 NTF2 Nuclear transport 99.9 6.3E-25 1.4E-29 165.2 10.0 102 8-134 1-105 (119)
4 PF02136 NTF2: Nuclear transpo 99.8 6.8E-20 1.5E-24 135.3 4.7 99 12-134 1-106 (118)
5 KOG4353|consensus 99.8 3.2E-19 6.9E-24 140.0 6.8 104 8-122 11-122 (139)
6 PF10429 Mtr2: Nuclear pore RN 98.3 4E-07 8.7E-12 74.4 3.9 92 11-112 5-104 (166)
7 cd00531 NTF2_like Nuclear tran 97.8 3.2E-05 7E-10 54.1 4.1 110 14-126 2-119 (124)
8 KOG3763|consensus 96.1 0.024 5.2E-07 54.3 8.2 116 7-134 335-482 (585)
9 PF13474 SnoaL_3: SnoaL-like d 96.1 0.0018 3.9E-08 46.4 0.3 105 14-124 2-112 (121)
10 PF15008 DUF4518: Domain of un 95.7 0.054 1.2E-06 47.4 8.1 92 6-101 124-227 (262)
11 TIGR02246 conserved hypothetic 94.4 0.41 8.9E-06 34.5 8.4 50 13-69 6-56 (128)
12 PF12680 SnoaL_2: SnoaL-like d 94.0 0.12 2.6E-06 35.1 4.5 57 17-81 1-60 (102)
13 TIGR02096 conserved hypothetic 90.9 0.96 2.1E-05 32.9 6.1 77 16-98 3-84 (129)
14 cd00781 ketosteroid_isomerase 90.8 1.8 3.8E-05 31.3 7.5 51 14-70 6-57 (122)
15 PF14534 DUF4440: Domain of un 88.4 1.5 3.2E-05 30.1 5.3 64 15-86 3-67 (107)
16 PRK09636 RNA polymerase sigma 60.6 48 0.001 28.3 7.5 75 12-86 172-252 (293)
17 PF07366 SnoaL: SnoaL-like pol 57.2 24 0.00053 25.6 4.5 74 18-98 5-82 (126)
18 TIGR02960 SigX5 RNA polymerase 56.1 66 0.0014 27.4 7.7 68 12-85 205-277 (324)
19 PF13577 SnoaL_4: SnoaL-like d 55.0 24 0.00052 25.1 4.1 64 12-80 8-74 (127)
20 COG4319 Ketosteroid isomerase 52.6 87 0.0019 25.1 7.2 70 26-102 26-97 (137)
21 PF08332 CaMKII_AD: Calcium/ca 47.4 37 0.00079 26.6 4.3 53 10-68 3-56 (128)
22 PF11533 DUF3225: Protein of u 47.3 54 0.0012 26.0 5.2 64 1-70 1-64 (125)
23 TIGR02957 SigX4 RNA polymerase 43.6 1.1E+02 0.0025 26.0 7.2 75 12-86 165-243 (281)
24 PF02759 RUN: RUN domain; Int 41.1 14 0.0003 27.3 1.0 33 10-42 66-107 (133)
25 smart00593 RUN domain involved 35.1 33 0.00072 23.0 2.1 43 15-69 12-54 (64)
26 COG4875 Uncharacterized protei 33.8 1.3E+02 0.0028 24.4 5.5 57 6-68 33-89 (156)
27 COG3631 Ketosteroid isomerase- 32.8 2.1E+02 0.0045 22.4 6.5 91 13-106 6-101 (133)
28 COG2920 DsrC Dissimilatory sul 28.5 41 0.0009 26.1 1.8 15 15-29 50-64 (111)
29 PF08863 YolD: YolD-like prote 24.3 1.4E+02 0.0031 20.7 3.9 63 26-100 3-65 (92)
30 COG5073 VID24 Vacuolar import 23.7 24 0.00053 31.1 -0.2 73 17-102 54-127 (272)
31 PRK08241 RNA polymerase factor 23.4 1.6E+02 0.0034 25.5 4.8 53 11-69 214-267 (339)
32 PF12642 TpcC: Conjugative tra 22.9 43 0.00093 27.5 1.1 30 12-41 2-36 (232)
33 PF12893 Lumazine_bd_2: Putati 22.7 1.5E+02 0.0032 21.5 3.9 69 14-87 7-81 (116)
34 PF07858 LEH: Limonene-1,2-epo 22.4 2.3E+02 0.005 22.0 5.0 66 8-83 2-70 (125)
No 1
>KOG2104|consensus
Probab=99.93 E-value=5.5e-26 Score=175.71 Aligned_cols=90 Identities=24% Similarity=0.429 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeecccc
Q psy6110 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ 85 (174)
Q Consensus 6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQp 85 (174)
++.++.||.+||++||.+||.+|.+|..||.+.|+| ||||++++|.++|.||+.+|||++|++.|+++||||
T Consensus 3 d~~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~L--------TfEGqq~qG~~~IveKl~sLpFqkiqh~IttvD~QP 74 (126)
T KOG2104|consen 3 DPVYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSML--------TFEGQQIQGKDAIVEKLTSLPFQKIQHSITTVDSQP 74 (126)
T ss_pred CccHHHHHHHHHHHHHHHhcCchhHhhhhhccccee--------eEcchhhcchHHHHHHHhcCChhhhhceeeeccccc
Confidence 347799999999999999999999999999999997 569999999999999999999999999999999999
Q ss_pred CC--CcEEEEEeeecCCCCC
Q psy6110 86 QF--PTVKQVEESLPPVTQP 103 (174)
Q Consensus 86 S~--GILI~VtG~ls~~~~p 103 (174)
+. ||||+|+|+|+.++++
T Consensus 75 t~~g~ilv~V~G~Lk~dEd~ 94 (126)
T KOG2104|consen 75 TPDGGILVMVVGQLKLDEDP 94 (126)
T ss_pred CCCCcEEEEEeeeeeeccCC
Confidence 99 7999999999999664
No 2
>KOG0116|consensus
Probab=99.92 E-value=1.2e-25 Score=204.15 Aligned_cols=115 Identities=36% Similarity=0.596 Sum_probs=101.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeee
Q psy6110 2 VMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQV 81 (174)
Q Consensus 2 ~m~~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~Si 81 (174)
++. .++++.||++||+|||++|++.|+.||+||.++|.++|+++| ..+..++|+++|+++|++|+|+.|+++|.++
T Consensus 7 ~~~-~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~d---g~m~s~t~~~~I~~~i~sld~~~~s~eI~tv 82 (419)
T KOG0116|consen 7 LSP-VPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLD---GKMVSVTGLEAIHEKIMSLDYEVCSVEISTV 82 (419)
T ss_pred ccC-CCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCC---CceEEEecHHHhhhheeecCCCceeEEEEEE
Confidence 344 689999999999999999999999999999999999999876 3567899999999999999999999999999
Q ss_pred ccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCcccc
Q psy6110 82 PVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEW 121 (174)
Q Consensus 82 DaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~ 121 (174)
|+|.|+ ||+|+|+|.|++++.+ +-+|.|+=-++|-+.+|
T Consensus 83 dsQ~S~~~GvvI~VtG~lt~~~~~-rRkF~QtFfLapq~~~y 123 (419)
T KOG0116|consen 83 DSQASLEKGVVIMVTGYLTNKDGP-RRKFSQTFFLAPQEKGY 123 (419)
T ss_pred ehhhhccCCeEEEEEEEEEeCCCc-ceEEEEEEEEeecCCce
Confidence 999999 9999999999999997 54555555555555544
No 3
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.92 E-value=6.3e-25 Score=165.16 Aligned_cols=102 Identities=31% Similarity=0.439 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCc-cccccHHHHHHHHHhCCCCcccEEEeeeccccC
Q psy6110 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRET-KQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ 86 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg-~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS 86 (174)
++++||++||++||++|+++|+.|++||.++|.|+| ++ +.+.|+++|.++|++|+++.++|+|.++|||++
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~--------~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~ 72 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSR--------EGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPT 72 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEE--------CCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEc
Confidence 478999999999999999999999999999999988 44 688999999999999999889999999999999
Q ss_pred C--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 87 F--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 87 ~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
. +|+|+|+|.++.++ +.++-|.|+|+|.|..
T Consensus 73 ~~~~ili~V~G~~~~~~-----------------~~~~~F~q~F~L~~~~ 105 (119)
T cd00780 73 PSGGVIVMVTGSLKLDE-----------------QPPRKFSQTFVLAPQN 105 (119)
T ss_pred CCCCEEEEEEEEEEECC-----------------CCceeEeEEEEEEecC
Confidence 8 89999999999876 4466778888887764
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.79 E-value=6.8e-20 Score=135.32 Aligned_cols=99 Identities=27% Similarity=0.429 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhcc-ccCCceeecCCCCCCcCcc-ccccHHHHHHHHHhCCCCcccEEEeeecccc--C
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFY-SENSLFIHGGLDAPNRETK-QVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ--Q 86 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY-~~~S~lv~gg~d~~t~eg~-~~~G~e~I~eki~sL~f~~~k~~I~SiDaQp--S 86 (174)
||+.||++||+.|++ +|+.|++|| .+.|.+. +.++ .+.|.++|.+++.+|+...++++|.++|||| +
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~--------~~~~~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~ 72 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLT--------WNGNRPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPS 72 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEE--------ETTECEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeec--------CCCchhhhhHHHHHHHHhcCCCcccEEEecccccccccc
Confidence 799999999999999 999999999 5555554 4666 8999999999999999987899999999995 3
Q ss_pred C--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 87 F--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 87 ~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
. +|+|.|+|.++.++.+.. +.|.|+|+|.|..
T Consensus 73 ~~~~i~i~v~G~~~~~~~~~~----------------~~F~q~FvL~~~~ 106 (118)
T PF02136_consen 73 SDGSILITVTGQFKEDDNPNP----------------RRFSQTFVLVPQN 106 (118)
T ss_dssp CCSEEEEEEEEEEEETTSEEE----------------EEEEEEEEEEEET
T ss_pred cCCcEEEEEEeEEEecCCCcc----------------cEEEEEEEEEEcC
Confidence 3 799999999999887411 8899999998764
No 5
>KOG4353|consensus
Probab=99.78 E-value=3.2e-19 Score=140.03 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF 87 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~ 87 (174)
++...+++||+.||..||++|..|.+||.++|.++| +|+++.|++.|.+.+..||. .+|+|..+||||.+
T Consensus 11 s~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvW--------NGn~v~g~esls~ff~~LPs--S~~qi~~lD~Qpv~ 80 (139)
T KOG4353|consen 11 SACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVW--------NGNPVSGTESLSEFFNMLPS--SEFQINDLDCQPVH 80 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEE--------cCCcchhHHHHHHHHHhCCC--ccccccccccccch
Confidence 345689999999999999999999999999999987 88999999999999999994 59999999999876
Q ss_pred --------CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccc
Q psy6110 88 --------PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWK 122 (174)
Q Consensus 88 --------GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~ 122 (174)
+|||+|+|.++++|+..+.+ .++.-+-+.++.||
T Consensus 81 dqat~~q~~vLvvvsGtVkFdG~k~r~F-~qt~ll~~e~~~~k 122 (139)
T KOG4353|consen 81 DQATGSQTTVLVVVSGTVKFDGNKQRVF-NQTFLLTAEDPPFK 122 (139)
T ss_pred hhcccccceEEEEEeeeEEEcCCccccc-cceeEEeecCCccc
Confidence 79999999999999864433 44444444444444
No 6
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=98.34 E-value=4e-07 Score=74.39 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhc-----cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeecccc
Q psy6110 11 CVGREFVRQYYTLLN-----QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ 85 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~-----~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQp 85 (174)
++.+.||+.||..|| +-...|..||..+|.++| +|+++.+..+..+.+.+.+- .++|+++++||+.
T Consensus 5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~--------Ng~Pi~~~~~F~~~w~~~pv-~TqH~L~s~D~H~ 75 (166)
T PF10429_consen 5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIW--------NGTPIAQPTAFQQTWQQQPV-QTQHQLTSFDCHV 75 (166)
T ss_dssp CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEE--------TTEEES-HHHHHHHHHCCS---EEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEE--------CCccCCCHHHHHHHHHhCcc-ceeeeeeeeeeeE
Confidence 357899999999999 336788899999999986 88999999999999999984 4699999999999
Q ss_pred CC---CcEEEEEeeecCCCCCCCCCCCCCC
Q psy6110 86 QF---PTVKQVEESLPPVTQPPSPPADPTP 112 (174)
Q Consensus 86 S~---GILI~VtG~ls~~~~p~~~~~~~~~ 112 (174)
.+ +++|.|.|.+.+|+. -+.++-.+.
T Consensus 76 IPGsgt~i~N~n~KVRFDEs-Grdk~G~~a 104 (166)
T PF10429_consen 76 IPGSGTFIINVNCKVRFDES-GRDKLGEDA 104 (166)
T ss_dssp ETTTTEEEEEEEEEEEEB-S-SB-TTS-B-
T ss_pred eCCCCeEEEeeeEEEEecCC-CCCCCCCce
Confidence 98 499999999999654 355554443
No 7
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=97.78 E-value=3.2e-05 Score=54.07 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCC--CcccEEEeeeccccCC---
Q psy6110 14 REFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF--RDCHAKIRQVPVTQQF--- 87 (174)
Q Consensus 14 ~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f--~~~k~~I~SiDaQpS~--- 87 (174)
++|+.+||..|+ .+++.|..||.+++.+.+++.+ .......|.++|.+.+..+.- ....|-+..++++...
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~---~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 78 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGD---GLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGE 78 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCC---EEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCE
Confidence 579999999999 6799999999999999874311 012456899999999998763 3445667888888765
Q ss_pred CcEEEEEeeecCCCC--CCCCCCCCCCCCCCCccccccccc
Q psy6110 88 PTVKQVEESLPPVTQ--PPSPPADPTPPSPPKEDEWKWNEQ 126 (174)
Q Consensus 88 GILI~VtG~ls~~~~--p~~~~~~~~~~~~~~~~~~~~~~~ 126 (174)
...+.+.+.+...+. +..--..........+|+||..+-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~ 119 (124)
T cd00531 79 GVVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANR 119 (124)
T ss_pred EEEEEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEE
Confidence 366677777766553 111112222233344566665443
No 8
>KOG3763|consensus
Probab=96.13 E-value=0.024 Score=54.31 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHHhhccCc-hhHhhccccCCceeecC----CC------------CCCcC-----------cccccc
Q psy6110 7 PSPQCVGREFVRQYYTLLNQAP-AHLHRFYSENSLFIHGG----LD------------APNRE-----------TKQVVG 58 (174)
Q Consensus 7 ps~~~VG~~FV~qYYt~L~~~p-~~L~rFY~~~S~lv~gg----~d------------~~t~e-----------g~~~~G 58 (174)
....++-.+|+++||..+|+++ ..|-..|.++|.|++.= .+ +..++ ..-..|
T Consensus 335 ~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g 414 (585)
T KOG3763|consen 335 EELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHG 414 (585)
T ss_pred hHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhcc
Confidence 3455688999999999999874 55566688999998630 00 00011 112458
Q ss_pred HHHHHHHHHhCCCCcccEEEee--ec--cccCCCcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 59 QEQIHEHIQQLNFRDCHAKIRQ--VP--VTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 59 ~e~I~eki~sL~f~~~k~~I~S--iD--aQpS~GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
...|.+.|.+|| .++|...+ +| .|-..++.+.|.|.+.-. +... .+..-+.+-|.-||+-+|++
T Consensus 415 ~~~Iv~aLs~LP--kT~Hdl~s~vvDv~~~~~~~l~ftv~G~f~d~-~g~~---------~~s~~~~~~FtRtfvv~P~~ 482 (585)
T KOG3763|consen 415 ACDIVVALSALP--KTQHDLDSFVVDVWYQTGNLLGFTVAGVFRDG-EGQN---------SPSNRALLGFTRTFVVTPRE 482 (585)
T ss_pred chHHHHHHHhCc--cchhhhhhhheeeeecccceEEEEEEEEeecC-CccC---------CcccccccccceEEEEeeCC
Confidence 889999999999 66777665 22 222227888899987543 1111 22222256788888888886
No 9
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.07 E-value=0.0018 Score=46.44 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccCC-Cc
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQF-PT 89 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS~-GI 89 (174)
++++++|++.+.+ +.+.|..+|.++..++.. ..+....|.++|.+.+... .+..+.+++..+..+... .+
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a 75 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGT------GPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVA 75 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEET------TSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcC------CCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEE
Confidence 4688999999885 579999999999998763 3555678999998888641 124666777766666543 34
Q ss_pred EEEEEeeecC--CCCCCCCCCCCCCCCCCCccccccc
Q psy6110 90 VKQVEESLPP--VTQPPSPPADPTPPSPPKEDEWKWN 124 (174)
Q Consensus 90 LI~VtG~ls~--~~~p~~~~~~~~~~~~~~~~~~~~~ 124 (174)
++...+.+.. ++++.....-.+-..+=++++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~ 112 (121)
T PF13474_consen 76 VVTGEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIV 112 (121)
T ss_dssp EEEEEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEEEecCCccceeeEEEEEEEEEECCEEEEE
Confidence 4444444432 3333222223344445566777764
No 10
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=95.74 E-value=0.054 Score=47.44 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHHhhcc--CchhHhhccccCCceee--cCCCCCCcCcccc-ccHHHHHHHHHhCCCCcccEE---
Q psy6110 6 TPSPQCVGREFVRQYYTLLNQ--APAHLHRFYSENSLFIH--GGLDAPNRETKQV-VGQEQIHEHIQQLNFRDCHAK--- 77 (174)
Q Consensus 6 ~ps~~~VG~~FV~qYYt~L~~--~p~~L~rFY~~~S~lv~--gg~d~~t~eg~~~-~G~e~I~eki~sL~f~~~k~~--- 77 (174)
..+.+.+|++|.++||..||. +-=..--|+.|-+.-+. .+. ...... .|.+.+..+|.+|..+..-+=
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~----~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPN 199 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSE----QNVEEYCEGAEEVSLRLLSLVKEERLFFNPN 199 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCC----CceeEEecCHHHHHHHHHHHhhcccEEECCC
Confidence 456789999999999999999 44455667776443321 111 122333 899999999999875422211
Q ss_pred Eee--eccccCC-C-cEEEEEeeecCCC
Q psy6110 78 IRQ--VPVTQQF-P-TVKQVEESLPPVT 101 (174)
Q Consensus 78 I~S--iDaQpS~-G-ILI~VtG~ls~~~ 101 (174)
+.+ +.|--+. | |+|.|.|+|=.++
T Consensus 200 l~~~G~k~~~~phGlV~V~v~GTvH~~~ 227 (262)
T PF15008_consen 200 LDSDGVKGRISPHGLVLVAVCGTVHRDN 227 (262)
T ss_pred CCCCCcceEEcCCCcEEEEEeeeEecCC
Confidence 223 4444455 7 9999999997754
No 11
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=94.42 E-value=0.41 Score=34.54 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
=++.+++|+..+++ +++.|..+|.+++.+.. ..+....|.++|.+.+..+
T Consensus 6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~-------~~g~~~~G~~~i~~~~~~~ 56 (128)
T TIGR02246 6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVT-------VPGQVWKGREAIAAAHEAF 56 (128)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC-------CCCCeecCHHHHHHHHHHH
Confidence 46778899999986 79999999999998752 2344789999999988753
No 12
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=93.99 E-value=0.12 Score=35.08 Aligned_cols=57 Identities=19% Similarity=0.444 Sum_probs=44.3
Q ss_pred HHHHHHhhccC-chhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeee
Q psy6110 17 VRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV 81 (174)
Q Consensus 17 V~qYYt~L~~~-p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~Si 81 (174)
|++||..+++. .+.|..||.++..+.. .+....|.++|.+.+..+- +...+++|..+
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHD--------PGGTLRGREAIREFFEEFFESFPDIRFEIHDI 60 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEE--------TTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEe--------CCCcccCHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 78999999864 7999999999988764 2345899999999888653 44566666665
No 13
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=90.87 E-value=0.96 Score=32.91 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=48.3
Q ss_pred HHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccC-C-CcE
Q psy6110 16 FVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQ-F-PTV 90 (174)
Q Consensus 16 FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS-~-GIL 90 (174)
=|++||+.+++ +.+.|..||.++..+... ..+....|.++|.+.+..+ .+.+.+++|..+=.... . .+.
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 76 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDN------QGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAE 76 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcC------CCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEE
Confidence 36789998886 689999999999876431 1223456799998877643 13466667665433332 1 233
Q ss_pred EEEEeeec
Q psy6110 91 KQVEESLP 98 (174)
Q Consensus 91 I~VtG~ls 98 (174)
..++|...
T Consensus 77 ~~~~g~~~ 84 (129)
T TIGR02096 77 WTVHGTYR 84 (129)
T ss_pred EEEeeeec
Confidence 44445543
No 14
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=90.79 E-value=1.8 Score=31.35 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 70 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~ 70 (174)
+..|++||..+++ +.+.|..+|.++..+.+. .....+.|.++|.+.+..+.
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p------~~~~~~~G~~~i~~~~~~~~ 57 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDP------VGSPPRSGRAAIAAFYAQSL 57 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCC------CCCCCccCHHHHHHHHHHHh
Confidence 5679999999986 699999999999998531 12346899999999998764
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=88.43 E-value=1.5 Score=30.13 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccC
Q psy6110 15 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ 86 (174)
Q Consensus 15 ~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS 86 (174)
+..++|...+++ +.+.|.++|.++..+++. .| ...|.+++.+.+..-.......++.....+..
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~-------~g-~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~ 67 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGP-------GG-TILGKEAILAAFKSGFARFSSIKFEDVEVRVL 67 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEET-------TS-EEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECC-------CC-CEeCHHHHHHHHhhccCCCceEEEEEEEEEEE
Confidence 567888888775 499999999999998863 23 34599999999987433333444444444433
No 16
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=60.56 E-value=48 Score=28.30 Aligned_cols=75 Identities=12% Similarity=0.220 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CC---cccEEEeeecccc
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FR---DCHAKIRQVPVTQ 85 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~---~~k~~I~SiDaQp 85 (174)
...+.|+.|+..|.+ +.+.|..++.++..+.-.|..........+.|.+.|...+..+. +. ...+....++.++
T Consensus 172 ~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG~~ 251 (293)
T PRK09636 172 EGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNGLP 251 (293)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECCce
Confidence 456789999999986 68999999999999874221100111245789999999887653 21 1234566788887
Q ss_pred C
Q psy6110 86 Q 86 (174)
Q Consensus 86 S 86 (174)
-
T Consensus 252 a 252 (293)
T PRK09636 252 G 252 (293)
T ss_pred e
Confidence 4
No 17
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=57.19 E-value=24 Score=25.62 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=48.3
Q ss_pred HHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccCC-CcEEEE
Q psy6110 18 RQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQF-PTVKQV 93 (174)
Q Consensus 18 ~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS~-GILI~V 93 (174)
+.|...+++ +.+.+.+||.++..+... .. ....|.+++.+.+..+ .|.+.+++|..+=+.... .+-...
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d~~~~~~------~~-~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~gd~v~~~~~~ 77 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPDVVFHDP------GP-GPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEGDRVAVRWTF 77 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEEEEEEGC------TT-TEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCCEEEEec------CC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEE
Confidence 445566665 689999999998775321 11 5788999888877654 355778888776555432 455556
Q ss_pred Eeeec
Q psy6110 94 EESLP 98 (174)
Q Consensus 94 tG~ls 98 (174)
+|+..
T Consensus 78 ~Gth~ 82 (126)
T PF07366_consen 78 TGTHT 82 (126)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 66654
No 18
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=56.12 E-value=66 Score=27.44 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--C--CCcccEEEeeecccc
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--N--FRDCHAKIRQVPVTQ 85 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~--f~~~k~~I~SiDaQp 85 (174)
....-|++||..+++ +.+.|..++.++..+... .-...+.|.+.|...+..+ . +.........+|.++
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p------~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~ 277 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMP------PYTLWYQGRPAIVGFIHTVCPGEGAAGMRLLPTIANGQP 277 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcC------CCCcceeCHHHHHHHHHHhcccccCCceeEEEeeecCCc
Confidence 456789999999996 689999999999887632 1234689999999999887 2 333444444466554
No 19
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=54.97 E-value=24 Score=25.10 Aligned_cols=64 Identities=14% Similarity=0.311 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEee
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQ 80 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~S 80 (174)
--++++..|...+|+ +.+.+..+|.+++.+.+.+. ....+.|.++|.+.+... .+..+.|.+..
T Consensus 8 ~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~-----~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~ 74 (127)
T PF13577_consen 8 AIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGF-----GFGRYRGRDAIRAFLRARFDGFAATRHMVTN 74 (127)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTT-----CEEEEESHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCc-----cccccCCHHHHHHHHHHhcccccceeEEccc
Confidence 345677888888885 58999999999999977421 024689999999988864 22344555443
No 20
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=52.56 E-value=87 Score=25.13 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=47.9
Q ss_pred cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC-CCcccEEEeeeccccCC-CcEEEEEeeecCCCC
Q psy6110 26 QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN-FRDCHAKIRQVPVTQQF-PTVKQVEESLPPVTQ 102 (174)
Q Consensus 26 ~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~-f~~~k~~I~SiDaQpS~-GILI~VtG~ls~~~~ 102 (174)
++-+.+.+||.++..+.= -.+....|.++|.+.+...- ......+.+..|-|-.. |=+..|+|.+...+.
T Consensus 26 ~D~~av~~~YtdDav~f~-------~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~~~~~~~~~~ 97 (137)
T COG4319 26 KDADAVADFYTDDAVVFP-------PPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFVTALLLLTGT 97 (137)
T ss_pred ccHHHHHHhcCCceEEec-------CCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEEEEeeeeecc
Confidence 567899999999999852 24678999999999988542 11234445556666444 666677777666553
No 21
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=47.44 E-value=37 Score=26.58 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhccCchhHhhccccC-CceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110 10 QCVGREFVRQYYTLLNQAPAHLHRFYSEN-SLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~~p~~L~rFY~~~-S~lv~gg~d~~t~eg~~~~G~e~I~eki~s 68 (174)
++|.+.|-++==.+-..+++...++|.++ +.|.. +..++...|.+.|...|..
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~P------t~s~~~~~g~~~~~~YF~~ 56 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEP------TVSNQLREGLEFHKFYFDH 56 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEG------GGTTSEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEecc------ccCCceecChHHHHHHHhc
Confidence 56777766655555557899999999999 88764 5677889999999988874
No 22
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=47.28 E-value=54 Score=25.99 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 70 (174)
Q Consensus 1 ~~m~~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~ 70 (174)
|-|+.+--..+|...|-+.+=-++.++-+-|-.|+-++..-++-| .+....|.++|.++-..-+
T Consensus 1 m~in~p~v~aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg------~~E~LyG~~aI~aFR~~R~ 64 (125)
T PF11533_consen 1 MEINDPEVVAEVTAAFDRYERALMANDVDALDALFWDDPRTVRYG------AGENLYGHDAIRAFRAARP 64 (125)
T ss_dssp -GBT-HHHHHHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEE------TTEEEESHHHHHHHHHHS-
T ss_pred CccCcHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEEC------CCccccCHHHHHHHHhcCC
Confidence 444433334567778765444555566899999998888877743 4567899999999887664
No 23
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=43.64 E-value=1.1e+02 Score=25.98 Aligned_cols=75 Identities=9% Similarity=0.142 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CC-cccEEEeeeccccC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FR-DCHAKIRQVPVTQQ 86 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~-~~k~~I~SiDaQpS 86 (174)
..+..|+.|-.-+.. +.+.|..+-.++..+.-.|.....-.-..+.|.+.|...+..+- +. ........++.||.
T Consensus 165 ~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~~~vnG~p~ 243 (281)
T TIGR02957 165 ESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDPVDVNGQPA 243 (281)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEEEEECCCce
Confidence 456788888888875 68999999999999875321101122345889999999987652 21 34677888999984
No 24
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=41.09 E-value=14 Score=27.29 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=25.7
Q ss_pred HHHHHHHHH---------HHHHhhccCchhHhhccccCCcee
Q psy6110 10 QCVGREFVR---------QYYTLLNQAPAHLHRFYSENSLFI 42 (174)
Q Consensus 10 ~~VG~~FV~---------qYYt~L~~~p~~L~rFY~~~S~lv 42 (174)
+.-++.||+ +|...+-.+++.|.+||.++|.|.
T Consensus 66 ~gk~ra~Ir~aLn~~~L~~~l~~l~~~~~~l~~~Y~~~A~l~ 107 (133)
T PF02759_consen 66 DGKFRAWIRLALNEKCLSSWLQLLLSDPKLLRKYYEPWAFLR 107 (133)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHCTTHHHHCCCB-TTSCTT
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHhcchHHcCccCCcceee
Confidence 556667765 577888889999999999998874
No 25
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=35.15 E-value=33 Score=23.02 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 15 EFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 15 ~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
.-+.+|-+.+-.+.+-+.+||.+.|.+.. -.+.+.+...+.+|
T Consensus 12 ~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~------------~~~~~~l~~~L~~L 54 (64)
T smart00593 12 KLLSSWLNLLLSDEELLSKYYEPWAFLRD------------PEEGEQLLGLLVGL 54 (64)
T ss_pred hHHHHHHHHHHhChHHHHHhCCCCceeeC------------hhHHHHHHHHHhCc
Confidence 34567888888899999999999988742 22445566666655
No 26
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=33.83 E-value=1.3e+02 Score=24.38 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68 (174)
Q Consensus 6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s 68 (174)
++.-++|+..|=++==.+...+|+++...|-+++.++- |...+.-..+.+|.+.|..
T Consensus 33 ~~t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLP------T~Sn~vR~s~~ei~DYF~~ 89 (156)
T COG4875 33 NVTEREVAALFDRWNAALTTGDPNKVAANYAPDAVLLP------TMSNQVRSSRSEILDYFSH 89 (156)
T ss_pred CccHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeec------ccccccccCHHHHHHHHHH
Confidence 56778899999999888888999999999999999863 3344445677888876653
No 27
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=32.82 E-value=2.1e+02 Score=22.35 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeeccccCCCc
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVTQQFPT 89 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQpS~GI 89 (174)
.++-|+.||..+.+ +-+.|-.++.++-...+.+-+ ..-+....|.+.+...+..++ +..+.+.+..+-+..- ++
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~--~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD-~~ 82 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTP--PLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGD-PV 82 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCC--CCccccccchhhhhHHhhhChhhcccccccceEEEEcCC-ce
Confidence 45668999998885 688999999998888776533 123333346666666666654 3345555555444332 23
Q ss_pred E-EEEEe-eecCCCCCCCC
Q psy6110 90 V-KQVEE-SLPPVTQPPSP 106 (174)
Q Consensus 90 L-I~VtG-~ls~~~~p~~~ 106 (174)
+ +...| .+...|++..+
T Consensus 83 ~~v~~~~~~~~~~G~~~~~ 101 (133)
T COG3631 83 GAVFRTRGRVSRTGKPYEN 101 (133)
T ss_pred EEEEEecCcccccCceeec
Confidence 3 33333 35565655443
No 28
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=28.54 E-value=41 Score=26.09 Aligned_cols=15 Identities=47% Similarity=0.979 Sum_probs=13.5
Q ss_pred HHHHHHHHhhccCch
Q psy6110 15 EFVRQYYTLLNQAPA 29 (174)
Q Consensus 15 ~FV~qYYt~L~~~p~ 29 (174)
.||+.||..|+..|.
T Consensus 50 ~fvR~fy~ef~tsPa 64 (111)
T COG2920 50 RFVREFYEEFNTSPA 64 (111)
T ss_pred HHHHHHHHHHCCCch
Confidence 699999999999874
No 29
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=24.30 E-value=1.4e+02 Score=20.66 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=43.0
Q ss_pred cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCCCcEEEEEeeecCC
Q psy6110 26 QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPV 100 (174)
Q Consensus 26 ~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~GILI~VtG~ls~~ 100 (174)
...+.|.+++.+...+.++.+| -.-.+.|.++|...--.+..+.|+.++. |-...++|.+..=
T Consensus 3 EH~e~L~~~~~e~~k~~kp~Ld--------e~~leei~~~l~~a~~~~~~v~ity~~~----g~~~~~~G~I~~i 65 (92)
T PF08863_consen 3 EHKEALRELIKEQNKVEKPELD--------EQQLEEINEKLSEAYQENQPVTITYYED----GYYQSVTGTIHKI 65 (92)
T ss_pred hHHHHHHHHHHHhcccCCCCCc--------HHHHHHHHHHHHHHhcCCCEEEEEEEEC----CeeEEEEEEEEEE
Confidence 3467788888877776554443 2355788888874322367788888885 7888888988643
No 30
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=23.68 E-value=24 Score=31.13 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=46.7
Q ss_pred HHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC-CcEEEEEe
Q psy6110 17 VRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF-PTVKQVEE 95 (174)
Q Consensus 17 V~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~-GILI~VtG 95 (174)
|+.||..-.+++.-+.+-|.-.+.+++ +|-++.|.+ +...+.=.+.++|.+||-+--. --|-+++|
T Consensus 54 ve~~~~~~~kn~~~~~~s~~~~~~~Lr--------~G~qF~G~Q-----is~~~~~~v~v~i~~Vdl~~kd~~sl~~l~G 120 (272)
T COG5073 54 VETYYMIRHKNKRRLFSSYTRRSGFLR--------NGAQFGGVQ-----ISGYPPLTVEVNIDTVDLPKKDDYSLPHLCG 120 (272)
T ss_pred EeecceecccCceEeeeeccchhhhcc--------CccccccEe-----ccCCcceEEEEEEEEEeccccccccccceee
Confidence 445666666777777777776666655 455666665 3444433578889999988732 22377778
Q ss_pred eecCCCC
Q psy6110 96 SLPPVTQ 102 (174)
Q Consensus 96 ~ls~~~~ 102 (174)
++.+..-
T Consensus 121 ~l~i~~l 127 (272)
T COG5073 121 TLNIQNL 127 (272)
T ss_pred EEEEecc
Confidence 7776553
No 31
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=23.36 E-value=1.6e+02 Score=25.46 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
+.-.+.|++||..|++ +.+.|..++.++..+... ..+..+.|.++|.+.+..+
T Consensus 214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p------~~~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 214 PEERALLARYVAAFEAYDVDALVALLTEDATWSMP------PFPLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcC------CCCCcccCHHHHHHHHHhh
Confidence 4567789999999986 689999999998776532 1234589999999999885
No 32
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=22.87 E-value=43 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=23.0
Q ss_pred HHHHHHHHHHH-----hhccCchhHhhccccCCce
Q psy6110 12 VGREFVRQYYT-----LLNQAPAHLHRFYSENSLF 41 (174)
Q Consensus 12 VG~~FV~qYYt-----~L~~~p~~L~rFY~~~S~l 41 (174)
.++.||..||+ ...+..+.|.+||..+..+
T Consensus 2 fa~~Fv~~Y~t~~~~~~~~~r~~~L~~y~~~~~~~ 36 (232)
T PF12642_consen 2 FAQDFVKEYLTKSDDEAPEEREARLAPYLTSDLDL 36 (232)
T ss_dssp HHHHHHHHHT--B-TTGHHHHHHHHTTTS-HHHHH
T ss_pred HHHHHHHHHcCCCCccChHHHHHHHHHHhcccccc
Confidence 57899999999 6667789999999765554
No 33
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=22.73 E-value=1.5e+02 Score=21.51 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh-----CCCCcccEEEeeeccccCC
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ-----LNFRDCHAKIRQVPVTQQF 87 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s-----L~f~~~k~~I~SiDaQpS~ 87 (174)
.+-|+.|++-+.+ +.+.|.+.+++++.+..-. + .......+++-.+.+.+ -....+..+|.+||.....
T Consensus 7 ~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~~ 81 (116)
T PF12893_consen 7 EATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-K----GKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGDV 81 (116)
T ss_dssp HHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-T----TEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-C----CceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECCE
Confidence 4558889888875 6999999999999886532 1 11344566777777764 3445788899999888643
No 34
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=22.36 E-value=2.3e+02 Score=22.02 Aligned_cols=66 Identities=15% Similarity=0.401 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHhhccC-chhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110 8 SPQCVGREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV 83 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~~-p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa 83 (174)
++.+|-+.|++-+. ..+ ...+..+..++... |. -...++.|.++|.+.|..+ ++....++|..+=+
T Consensus 2 ~~~~vV~~F~~a~~---~~D~~~a~~~~~~~d~vy-~N------vplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaa 70 (125)
T PF07858_consen 2 TPEEVVRAFLAALE---DRDVDAALASLFDDDAVY-HN------VPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAA 70 (125)
T ss_dssp HHHHHHHHHHHHHH---HT-HHHHHHHCEECC-EE-EE------TTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHH---cCCHHHHHHHhcCCCcEE-Ee------CCCCCcccHHHHHHHHHHHhcccceeEEEEEEEee
Confidence 46667777776652 123 34566666665554 32 2334689999999999877 44455566555433
Done!