Query psy6110
Match_columns 174
No_of_seqs 118 out of 504
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:53:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 8.7E-33 3E-37 215.1 8.4 115 1-133 2-118 (140)
2 3ujm_A Rasputin; NTF2-like fol 100.0 4.7E-30 1.6E-34 194.9 6.3 103 8-134 2-106 (120)
3 1gy6_A Nuclear transport facto 100.0 2.4E-29 8.3E-34 192.6 8.0 106 3-133 1-108 (127)
4 1zo2_A NTF2, nuclear transport 100.0 1.1E-28 3.8E-33 189.6 8.5 105 5-134 7-113 (129)
5 1gy7_A Nuclear transport facto 99.9 3.2E-28 1.1E-32 186.0 8.4 102 8-133 4-108 (125)
6 2qiy_A UBP3-associated protein 99.9 5.2E-27 1.8E-31 184.7 6.2 112 6-134 8-132 (154)
7 1jkg_A P15; NTF2-like domain, 99.9 2.9E-25 9.8E-30 172.3 8.0 100 8-134 12-119 (140)
8 3nv0_B NTF2-related export pro 99.9 7.1E-25 2.4E-29 174.1 5.1 99 8-133 32-139 (154)
9 1jkg_B TAP; NTF2-like domain, 99.7 2.9E-17 9.8E-22 138.4 5.8 111 7-133 12-153 (250)
10 1q40_B MEX67, mRNA export fact 99.7 6.7E-17 2.3E-21 134.9 7.5 125 7-133 11-192 (219)
11 1of5_A MRNA export factor MEX6 99.7 2.8E-17 9.7E-22 137.3 4.7 126 6-133 7-187 (221)
12 1q42_A MTR2, mRNA transport re 99.4 9.9E-14 3.4E-18 114.3 5.9 98 1-111 19-140 (201)
13 3nv0_A Nuclear RNA export fact 99.2 2.3E-11 7.8E-16 100.3 8.1 118 7-134 10-169 (205)
14 1of5_B MTR2, YKL186C, mRNA tra 99.1 4.6E-10 1.6E-14 91.5 8.9 106 1-134 8-122 (184)
15 3gwr_A Putative calcium/calmod 94.5 0.034 1.1E-06 41.9 4.0 114 14-136 11-135 (144)
16 3dm8_A Uncharacterized protein 93.4 0.16 5.5E-06 37.2 5.8 69 14-83 7-79 (143)
17 4h3u_A Hypothetical protein; s 93.0 0.17 5.8E-06 37.5 5.4 61 15-81 29-92 (158)
18 3cu3_A Domain of unknown funct 92.8 0.083 2.9E-06 39.8 3.5 110 12-128 17-135 (172)
19 3dxo_A Uncharacterized snoal-l 92.3 0.12 4E-06 37.3 3.6 65 14-86 6-78 (121)
20 3gzb_A Putative snoal-like pol 92.0 0.97 3.3E-05 35.5 8.7 77 12-97 21-100 (154)
21 2gxf_A Hypothetical protein YY 91.5 0.4 1.4E-05 34.7 5.8 49 14-69 6-55 (142)
22 3h51_A Putative calcium/calmod 91.4 0.093 3.2E-06 38.9 2.3 117 11-135 20-144 (156)
23 3hx8_A MLR2180 protein, putati 91.1 0.66 2.3E-05 31.9 6.4 54 8-68 3-57 (129)
24 3h3h_A Uncharacterized snoal-l 91.1 0.22 7.5E-06 35.2 3.9 83 11-96 8-94 (122)
25 3er7_A Uncharacterized NTF2-li 89.8 0.27 9.3E-06 36.8 3.7 59 15-81 6-72 (131)
26 2rcd_A Uncharacterized protein 89.5 0.44 1.5E-05 34.1 4.4 51 10-67 14-64 (129)
27 4i4k_A Uncharacterized protein 88.0 1.4 4.8E-05 32.3 6.5 48 13-68 21-69 (143)
28 3ehc_A Snoal-like polyketide c 87.8 0.55 1.9E-05 33.2 4.0 59 14-83 6-67 (128)
29 3k0z_A Putative polyketide cyc 87.7 1.3 4.4E-05 33.0 6.1 65 13-84 36-103 (159)
30 1ohp_A Steroid delta-isomerase 87.4 0.53 1.8E-05 31.9 3.5 52 12-69 6-58 (125)
31 1nww_A Limonene-1,2-epoxide hy 86.5 1.1 3.7E-05 32.2 4.9 51 12-69 23-74 (149)
32 3en8_A Uncharacterized NTF-2 l 86.3 3.8 0.00013 29.5 7.9 53 12-70 6-59 (128)
33 3d9r_A Ketosteroid isomerase-l 86.1 0.65 2.2E-05 32.4 3.5 65 11-82 11-79 (135)
34 3fh1_A Uncharacterized NTF2-li 86.1 1.8 6E-05 30.7 5.9 69 10-81 16-86 (129)
35 3f9s_A Putative polyketide cyc 85.9 1.7 5.6E-05 31.3 5.7 69 13-84 8-80 (146)
36 1oh0_A Steroid delta-isomerase 85.4 0.69 2.4E-05 32.1 3.3 53 11-69 7-60 (131)
37 2owp_A Hypothetical protein BX 85.3 2.1 7.2E-05 31.4 6.1 55 10-70 11-65 (129)
38 3mg1_A OCP, orange carotenoid 85.0 2.5 8.5E-05 37.0 7.3 79 12-99 193-275 (323)
39 2gey_A ACLR protein; alpha+bet 84.7 1.6 5.4E-05 32.1 5.2 63 12-83 5-70 (158)
40 2gex_A SNOL; alpha+beta barrel 83.6 2.1 7.1E-05 31.1 5.4 64 12-83 5-71 (152)
41 3bb9_A Putative orphan protein 83.0 0.39 1.3E-05 35.1 1.2 48 12-67 31-80 (148)
42 1sjw_A Nogalonic acid methyl e 82.8 0.98 3.4E-05 32.1 3.3 65 13-83 4-72 (144)
43 3g16_A Uncharacterized protein 82.8 1.8 6.1E-05 33.6 4.9 61 5-69 4-65 (156)
44 3ff2_A Uncharacterized cystati 82.4 1.7 5.9E-05 30.1 4.4 64 14-83 5-71 (117)
45 3soy_A NTF2-like superfamily p 82.4 0.5 1.7E-05 35.2 1.6 51 11-69 11-63 (145)
46 3ec9_A Uncharacterized NTF2-li 82.2 2.1 7.2E-05 30.4 4.9 65 14-81 15-83 (140)
47 2f99_A Aklanonic acid methyl e 82.2 1.1 3.9E-05 32.8 3.5 66 12-83 12-81 (153)
48 2a15_A Hypothetical protein RV 81.6 1.3 4.5E-05 31.4 3.6 66 13-79 9-78 (139)
49 3fgy_A Uncharacterized NTF2-li 81.4 0.97 3.3E-05 31.8 2.8 55 12-69 6-61 (135)
50 2bng_A MB2760; epoxide hydrola 81.4 2.3 7.9E-05 30.7 4.9 63 12-82 16-81 (149)
51 3jum_A Phenazine biosynthesis 80.7 3.3 0.00011 33.1 5.9 87 12-102 42-135 (185)
52 3f7s_A Uncharacterized NTF2-li 80.0 7.2 0.00025 27.6 7.1 113 10-129 7-127 (142)
53 3ebt_A Uncharacterized NTF2-li 79.7 2 6.7E-05 29.9 3.9 67 14-81 6-76 (132)
54 3rga_A Epoxide hydrolase; NTF2 79.0 2.1 7.2E-05 35.4 4.5 54 10-69 137-191 (283)
55 3b7c_A Uncharacterized protein 78.9 2.6 8.9E-05 29.7 4.4 78 14-99 8-91 (122)
56 3mso_A Steroid delta-isomerase 78.7 2.4 8.1E-05 31.4 4.3 53 11-69 9-62 (143)
57 3f7x_A Putative polyketide cyc 78.4 2 6.9E-05 31.7 3.8 50 13-69 22-72 (151)
58 3i0y_A Putative polyketide cyc 77.8 2.3 7.8E-05 29.9 3.8 51 13-70 10-61 (140)
59 3f8x_A Putative delta-5-3-keto 77.0 2.7 9.4E-05 31.8 4.2 53 11-69 20-73 (148)
60 3kkg_A Putative snoal-like pol 76.8 2.3 7.7E-05 30.6 3.6 64 13-83 11-80 (146)
61 2k54_A Protein ATU0742; protei 76.5 2.3 7.9E-05 29.5 3.5 62 13-80 5-68 (123)
62 1z1s_A Hypothetical protein PA 76.4 2 6.7E-05 31.9 3.2 55 14-70 26-81 (163)
63 3gzr_A Uncharacterized protein 76.3 3 0.0001 30.9 4.2 49 13-68 8-57 (146)
64 3rob_A Uncharacterized conserv 75.8 3.8 0.00013 30.3 4.7 112 10-132 16-138 (139)
65 1s5a_A Hypothetical protein YE 74.9 2.5 8.5E-05 30.0 3.3 56 12-69 11-67 (150)
66 3ff0_A Phenazine biosynthesis 74.7 2 6.9E-05 33.7 3.0 54 11-69 19-75 (163)
67 2chc_A Protein RV3472; hypothe 73.9 3.7 0.00013 30.3 4.2 61 12-80 15-77 (170)
68 3b8l_A Uncharacterized protein 73.4 2.3 7.9E-05 31.2 2.9 65 11-80 28-96 (163)
69 3hk4_A MLR7391 protein; NTF2-l 72.1 11 0.00037 27.8 6.4 52 14-69 23-76 (136)
70 3g0k_A Putative membrane prote 71.4 5.3 0.00018 29.6 4.6 77 10-98 26-106 (148)
71 2ux0_A Calcium-calmodulin depe 70.5 19 0.00064 25.4 7.2 69 13-86 15-87 (143)
72 3rga_A Epoxide hydrolase; NTF2 69.9 4.7 0.00016 33.3 4.4 52 12-69 7-59 (283)
73 3dmc_A NTF2-like protein; stru 66.0 21 0.0007 25.7 6.7 59 7-69 8-67 (134)
74 3a76_A Gamma-hexachlorocyclohe 65.6 4.7 0.00016 30.4 3.2 62 12-80 32-97 (176)
75 2rfr_A Uncharacterized protein 64.9 7.8 0.00027 27.7 4.2 51 12-69 20-71 (155)
76 3f8h_A Putative polyketide cyc 64.9 3.7 0.00013 30.3 2.4 48 15-69 22-70 (150)
77 3f14_A Uncharacterized NTF2-li 64.8 14 0.00049 25.4 5.5 74 15-98 4-80 (112)
78 3ef8_A Putative scyalone dehyd 61.5 5.5 0.00019 29.1 2.8 61 13-80 13-76 (150)
79 1tuh_A BAL32A, hypothetical pr 61.3 8.5 0.00029 27.8 3.9 68 11-81 29-100 (156)
80 3grd_A Uncharacterized NTF2-su 60.2 2.9 0.0001 29.3 1.1 65 14-81 7-75 (134)
81 3g8z_A Protein of unknown func 57.0 11 0.00038 27.3 3.9 54 13-69 22-76 (148)
82 2rgq_A Domain of unknown funct 53.1 26 0.00089 25.0 5.3 113 10-131 9-128 (144)
83 3f40_A Uncharacterized NTF2-li 52.5 26 0.00088 24.5 5.1 50 13-70 8-58 (114)
84 3ejv_A Uncharacterized protein 43.6 31 0.0011 26.3 4.6 72 10-81 25-103 (179)
85 3cwz_B RAB6IP1, RAB6-interacti 41.4 59 0.002 28.6 6.6 75 11-97 176-277 (384)
86 1tp6_A Hypothetical protein PA 38.1 35 0.0012 24.4 4.0 74 13-94 12-91 (128)
87 3cnx_A Uncharacterized protein 37.2 99 0.0034 23.7 6.7 108 14-128 15-153 (170)
88 3duk_A NTF2-like protein of un 35.9 73 0.0025 22.6 5.4 68 13-86 14-85 (125)
89 3flj_A Uncharacterized protein 34.1 50 0.0017 25.2 4.4 49 14-68 21-70 (155)
90 2r4i_A Uncharacterized protein 30.7 1.2E+02 0.004 20.0 5.9 64 15-86 10-74 (123)
91 4giw_A RUN and SH3 domain-cont 28.9 22 0.00076 28.0 1.6 48 18-72 134-184 (198)
92 2f86_B Hypothetical protein K1 24.8 12 0.00042 27.8 -0.6 106 14-124 15-126 (143)
93 3lyg_A NTF2-like protein of un 24.0 33 0.0011 26.0 1.7 46 16-67 7-53 (120)
94 3fsd_A NTF2-like protein of un 20.2 2.2E+02 0.0076 19.6 6.0 78 14-99 17-95 (134)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=99.97 E-value=8.7e-33 Score=215.11 Aligned_cols=115 Identities=51% Similarity=0.782 Sum_probs=92.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEee
Q psy6110 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQ 80 (174)
Q Consensus 1 ~~m~~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~S 80 (174)
|||| +|++++||++||+|||++|+++|+.|++||+++|+|+|++.|+++.....+.|+++|.++|++|||++|+|+|.+
T Consensus 2 ~~~~-~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~t 80 (140)
T 3q90_A 2 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRH 80 (140)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEE
T ss_pred Cccc-CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEe
Confidence 9999 999999999999999999999999999999999999997654221122378999999999999999999999999
Q ss_pred eccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110 81 VPVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR 133 (174)
Q Consensus 81 iDaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (174)
+|||++. ||||+|+|+|+.+++ ..|-|.|||+|+|.
T Consensus 81 vD~Qps~~~gilI~V~G~l~~~~~-----------------~~~~F~QtF~L~p~ 118 (140)
T 3q90_A 81 VDAHATLNDGVVVQVMGLLSNNNQ-----------------ALRRFMQTFVLAPE 118 (140)
T ss_dssp EEEEECGGGCEEEEEEEEEECTTC-----------------CCEEEEEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEEEEecCCC-----------------CccEEEEEEEEeec
Confidence 9999998 899999999998653 36889999999987
No 2
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=99.96 E-value=4.7e-30 Score=194.90 Aligned_cols=103 Identities=57% Similarity=0.791 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF 87 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~ 87 (174)
||++||++||++||++|+++|+.|++||+++|+++| ++++.+.|+++|.++|++|||.+|+|+|.++||||+.
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~-------~~~~~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~ 74 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIH-------GESKLVVGQREIHNRIQQLNFNDCHAKISQVDAQATL 74 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE-------TTCCCEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEE-------cCCcEecCHHHHHHHHHcCCCcceEEEEecccceEcC
Confidence 688999999999999999999999999999999987 4778999999999999999999999999999999998
Q ss_pred --CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 88 --PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 88 --GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
||||+|+|+|+.+++ ..|-|.|||+|+|..
T Consensus 75 ~~gili~V~G~l~~~~~-----------------~~r~F~QtF~L~p~~ 106 (120)
T 3ujm_A 75 GNGVVVQVTGELSNDGQ-----------------PMRRFTQTFVLAAQS 106 (120)
T ss_dssp GGEEEEEEEEEEESTTC-----------------CCEEEEEEEEEEECS
T ss_pred CCCEEEEEEEEEEeCCC-----------------CCceEEEEEEEEEcC
Confidence 799999999998764 147899999999863
No 3
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=99.96 E-value=2.4e-29 Score=192.60 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=97.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeec
Q psy6110 3 MEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVP 82 (174)
Q Consensus 3 m~~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiD 82 (174)
|+.+|++++||++||++||++|+++|+.|++||+++|+|+| +|+.+.|+++|.++|++|||++++|+|.++|
T Consensus 1 m~~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~--------~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~d 72 (127)
T 1gy6_A 1 MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTW--------EGQQFQGKAAIVEKLSSLPFQKIQHSITAQD 72 (127)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHCSCSCEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEE--------CCccccCHHHHHHHHHhCCCcceEEEEEEEE
Confidence 66789999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred cccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110 83 VTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR 133 (174)
Q Consensus 83 aQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (174)
||++. ||||+|+|.++.+++ ..|-|.|||+|+|.
T Consensus 73 ~qp~~~~~ili~V~G~~~~~~~-----------------~~~~F~qtF~L~p~ 108 (127)
T 1gy6_A 73 HQPTPDSCIISMVVGQLKADED-----------------PIMGFHQMFLLKNI 108 (127)
T ss_dssp EEECTTSCEEEEEEEEEEETTS-----------------CCEEEEEEEEEEEE
T ss_pred EEEeCCCcEEEEEEEEEEECCC-----------------CcceEeEEEEEEEe
Confidence 99998 899999999998642 57889999999985
No 4
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=99.95 E-value=1.1e-28 Score=189.59 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccc
Q psy6110 5 VTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVT 84 (174)
Q Consensus 5 ~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQ 84 (174)
.+|++++||++||++||++|+++|+.|++||+++|+|+| +|+.+.|+++|.++|++|||++++|+|.++|||
T Consensus 7 ~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~--------~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~q 78 (129)
T 1zo2_A 7 LNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTW--------EDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQ 78 (129)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEE--------CCceeccHHHHHHHHHhCCCcceEEEEEEEEEE
Confidence 379999999999999999999999999999999999986 678999999999999999999999999999999
Q ss_pred cCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 85 QQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 85 pS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
++. ||||+|+|.++.++ +..|-|.|||+|+|..
T Consensus 79 p~~~~gilI~V~G~~~~~~-----------------~~~~~F~qtF~L~p~~ 113 (129)
T 1zo2_A 79 PSPNNGSIVFVTGDVRIDD-----------------GQPLKFSQVFNLMPSG 113 (129)
T ss_dssp ECTBSSEEEEEEEEEEETT-----------------CCCEEEEEEEEEEECS
T ss_pred EeCCCcEEEEEEEEEEECC-----------------CCcceEEEEEEEEEcC
Confidence 998 89999999999864 2578999999999964
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=99.95 E-value=3.2e-28 Score=185.96 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF 87 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~ 87 (174)
++++||++||++||++|+++|+.|++||+++|.|+| +|+.+.|+++|.++|.+|||++++|+|.++||||+.
T Consensus 4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~--------~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~ 75 (125)
T 1gy7_A 4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF--------ETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPAS 75 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEE--------CCcEecCHHHHHHHHHhCCCcceEEEEEEEEEEEec
Confidence 699999999999999999999999999999999986 678999999999999999999999999999999994
Q ss_pred ---CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110 88 ---PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR 133 (174)
Q Consensus 88 ---GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (174)
||||+|+|.++.+++ ...|-|.|||+|+|.
T Consensus 76 ~~~gili~V~G~~~~~~~----------------~~~~~F~qtF~L~p~ 108 (125)
T 1gy7_A 76 PYGDVLVMITGDLLIDEE----------------QNPQRFSQVFHLIPD 108 (125)
T ss_dssp TTSCEEEEEEEEEEETTC----------------SSCEEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEEEECCC----------------CCCccEeEEEEEEEe
Confidence 899999999998653 257899999999986
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.93 E-value=5.2e-27 Score=184.65 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCC-------CCcCccccccHHHHHHHHHhC--CCCcccE
Q psy6110 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDA-------PNRETKQVVGQEQIHEHIQQL--NFRDCHA 76 (174)
Q Consensus 6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~-------~t~eg~~~~G~e~I~eki~sL--~f~~~k~ 76 (174)
.|++++||++||+|||++|+++|+.|++||+++|.|+|....+ +...+..+.|+++|.++|++| ||++++|
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h 87 (154)
T 2qiy_A 8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL 87 (154)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence 3789999999999999999999999999999999999974211 112378999999999999999 9999999
Q ss_pred EEeeeccccCC----CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 77 KIRQVPVTQQF----PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 77 ~I~SiDaQpS~----GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
+|.++|||++. ||||+|+|.++.++ +..|.|.|||+|+|..
T Consensus 88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~-----------------~~~r~F~qtFvL~p~~ 132 (154)
T 2qiy_A 88 KLDTIDFQYTGHLHKSILIMATGEMFWTG-----------------TPVYKFCQTFILLPSS 132 (154)
T ss_dssp EEEEEEEEEESGGGCEEEEEEEEEEEETT-----------------CCCEEEEEEEEEEECC
T ss_pred EEEEEEEEEccCCCCEEEEEEEEEEEECC-----------------CCCceEEEEEEEEEeC
Confidence 99999999985 69999999999753 2578999999999963
No 7
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.92 E-value=2.9e-25 Score=172.27 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccC-
Q psy6110 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ- 86 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS- 86 (174)
.+.+||++||++||++|+++|+.|++||+++|+|+| +|+.+.|+++|.++|.+||++ +|+|.++|||++
T Consensus 12 ~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~--------~g~~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~ 81 (140)
T 1jkg_A 12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVW--------NGNAVSGQESLSEFFEMLPSS--EFQISVVDCQPVH 81 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCCE--EEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEE--------CCeeecCHHHHHHHHHhCCCc--eeEEEEEEEEEcC
Confidence 567899999999999999999999999999999976 678999999999999999987 699999999998
Q ss_pred ------C-CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 87 ------F-PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 87 ------~-GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
. ||+|+|+|.++.+++ ..|-|.|||+|+|..
T Consensus 82 ~~~~~~~~~ilI~V~G~~~~~~~-----------------~~r~F~qtF~L~p~~ 119 (140)
T 1jkg_A 82 DEATPSQTTVLVVICGSVKFEGN-----------------KQRDFNQNFILTAQA 119 (140)
T ss_dssp TTTSTTCCEEEEEEEEEEEETTS-----------------CCEEEEEEEEEEEEC
T ss_pred CcccCCCCeEEEEEEEEEEECCC-----------------CceeeeEEEEEEecC
Confidence 2 799999999997654 578999999999965
No 8
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.90 E-value=7.1e-25 Score=174.10 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF 87 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~ 87 (174)
.+.+||++||++||++|+++|+.|++||.++|.|+| +|+.+.|+++|.++|++||+ ++|+|.++|||++.
T Consensus 32 ~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~--------~g~~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~ 101 (154)
T 3nv0_B 32 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVW--------NGNPINGYDSICEFMKALPS--TQHDIQSLDAQRLP 101 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCC--EEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEE--------CCeecccHHHHHHHHHhCCC--eEEEEEEEEEEEcC
Confidence 456799999999999999999999999999999976 77889999999999999996 79999999999986
Q ss_pred ---------CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110 88 ---------PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR 133 (174)
Q Consensus 88 ---------GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (174)
||||+|+|.++.++++ .|.|.|||+|+|.
T Consensus 102 ~~~~~q~~~~ilI~V~G~l~~~~~~-----------------~r~F~QtFvL~p~ 139 (154)
T 3nv0_B 102 EGVTGDMSGGMLLNVAGAVTVDGDS-----------------KRAFTQTLLLGVE 139 (154)
T ss_dssp TTCCGGGTTCEEEEEEEEEEETTSC-----------------CEEEEEEEEEEEE
T ss_pred ccccCCCCCeEEEEEEEEEEECCCC-----------------ceeEEEEEEEEEe
Confidence 7999999999987551 5889999999986
No 9
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.67 E-value=2.9e-17 Score=138.45 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHHhhccC-chhHhhccccCCceeecCCCCCC---------------cC-----------ccccccH
Q psy6110 7 PSPQCVGREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPN---------------RE-----------TKQVVGQ 59 (174)
Q Consensus 7 ps~~~VG~~FV~qYYt~L~~~-p~~L~rFY~~~S~lv~gg~d~~t---------------~e-----------g~~~~G~ 59 (174)
..++.+|++||++||++||++ |..|.++|+++|+|++.. +... ++ ...+.|.
T Consensus 12 ~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~-~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~ 90 (250)
T 1jkg_B 12 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI-PFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTR 90 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEEC-CCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESH
T ss_pred HHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEe-CCCCCCccccchhhhhhhccchhcccchhhhhhhhccCH
Confidence 456789999999999999998 999999999999999852 1000 00 0367999
Q ss_pred HHHHHHHHhCCCCcccEEEe--eeccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110 60 EQIHEHIQQLNFRDCHAKIR--QVPVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR 133 (174)
Q Consensus 60 e~I~eki~sL~f~~~k~~I~--SiDaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (174)
++|.++|.+|| .++|.+. ++|+|+.. +|+|+|+|.++.++.. .++..|.|.|||++.|.
T Consensus 91 ~~I~~~l~~LP--~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~-------------~~~~~r~F~rtFvL~p~ 153 (250)
T 1jkg_B 91 LNVVAFLNELP--KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGK-------------SRDSLRAFTRTFIAVPA 153 (250)
T ss_dssp HHHHHHHTTSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSST-------------TTTCEEEEEEEEEEEEC
T ss_pred HHHHHHHHhCC--CeeEeccceEEeeeecCCCEEEEEEEEEEEECCCC-------------CCCCceeeEEEEEEEEC
Confidence 99999999999 6688888 79999976 7999999999976521 13468899999999885
No 10
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.67 E-value=6.7e-17 Score=134.87 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCC---CCCC-cCc-----------------------------
Q psy6110 7 PSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGL---DAPN-RET----------------------------- 53 (174)
Q Consensus 7 ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~---d~~t-~eg----------------------------- 53 (174)
...+.++.+||++||++||++|..|..||+++|+|++..- +... .++
T Consensus 11 ~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~ 90 (219)
T 1q40_B 11 EDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARM 90 (219)
T ss_dssp --CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhh
Confidence 4577899999999999999999999999999999998521 0000 001
Q ss_pred -cccccHHHHHHHHHhCCCCcccEEE------eeeccc--cCC-CcEEEEEeeecCCCCCCC--------------CCCC
Q psy6110 54 -KQVVGQEQIHEHIQQLNFRDCHAKI------RQVPVT--QQF-PTVKQVEESLPPVTQPPS--------------PPAD 109 (174)
Q Consensus 54 -~~~~G~e~I~eki~sL~f~~~k~~I------~SiDaQ--pS~-GILI~VtG~ls~~~~p~~--------------~~~~ 109 (174)
..+.|.++|.++|.+|| .++|.| .++||| |+. ||+|+|.|.+...+.+.- .+..
T Consensus 91 ~~l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~ 168 (219)
T 1q40_B 91 AKLSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH 168 (219)
T ss_dssp HTCEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred hhhccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccc
Confidence 15779999999999999 679999 599999 445 899999999987554321 1111
Q ss_pred CCCCCCCCccccccccccceecCC
Q psy6110 110 PTPPSPPKEDEWKWNEQTPVEAPR 133 (174)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~ 133 (174)
-...........|.|.|||+++|.
T Consensus 169 ~~~~~~~~~~~~rsF~RtFvL~P~ 192 (219)
T 1q40_B 169 SGPKHKRIPLSKKSFDRTFVVIPG 192 (219)
T ss_dssp SSSCCCCCCCCCEEEEEEEEEECC
T ss_pred cccccccccCCccceEEEEEEEEC
Confidence 111111223579999999999996
No 11
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.67 E-value=2.8e-17 Score=137.34 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCC------------CCcC-------------------cc
Q psy6110 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDA------------PNRE-------------------TK 54 (174)
Q Consensus 6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~------------~t~e-------------------g~ 54 (174)
....+.++.+||++||++||++|..|..||+++|+|++..-.. ..|. ..
T Consensus 7 d~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~ 86 (221)
T 1of5_A 7 NDALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQR 86 (221)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC-------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhh
Confidence 4567889999999999999999999999999999998743100 0011 14
Q ss_pred ccccHHHHHHHHHhCCCCcccEEE------eeeccccCC---CcEEEEEeeecCCCCCC--------------CCCCCCC
Q psy6110 55 QVVGQEQIHEHIQQLNFRDCHAKI------RQVPVTQQF---PTVKQVEESLPPVTQPP--------------SPPADPT 111 (174)
Q Consensus 55 ~~~G~e~I~eki~sL~f~~~k~~I------~SiDaQpS~---GILI~VtG~ls~~~~p~--------------~~~~~~~ 111 (174)
.+.|.++|.++|.+|| .++|.| .++|||+.. ||+|+|.|.+...+.+. ..+....
T Consensus 87 l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (221)
T 1of5_A 87 LSIGQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHG 164 (221)
T ss_dssp -CBHHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-------------------------
T ss_pred hccCHHHHHHHHHhCC--CeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccc
Confidence 6789999999999999 669999 599999985 79999999998766541 1122222
Q ss_pred CCCCC-CccccccccccceecCC
Q psy6110 112 PPSPP-KEDEWKWNEQTPVEAPR 133 (174)
Q Consensus 112 ~~~~~-~~~~~~~~~~~~~~~~~ 133 (174)
....| .....|.|.+||+++|.
T Consensus 165 ~~~~~~~~~~~rsF~RTFvL~P~ 187 (221)
T 1of5_A 165 YNSTSNNKLSKKSFDRTWVIVPM 187 (221)
T ss_dssp ----CCSCCEEEEEEEEEEEEEE
T ss_pred ccccccccCCccceEEEEEEEec
Confidence 21121 13468999999999996
No 12
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.43 E-value=9.9e-14 Score=114.30 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=81.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCch-----hHh------hcc----ccCCceeecCCCCCCcCcccc------ccH
Q psy6110 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPA-----HLH------RFY----SENSLFIHGGLDAPNRETKQV------VGQ 59 (174)
Q Consensus 1 ~~m~~~ps~~~VG~~FV~qYYt~L~~~p~-----~L~------rFY----~~~S~lv~gg~d~~t~eg~~~------~G~ 59 (174)
|+|+ -++...++.|++.||..||+.+. .|. ++| .++|.++| +|+.+ .|+
T Consensus 19 ~~mn--~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liw--------NGnp~~~~~~~~gr 88 (201)
T 1q42_A 19 SHMN--QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIV--------NGQPIIPSPQEDCK 88 (201)
T ss_dssp ------CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEE--------TTEECCCCSSCCHH
T ss_pred cccC--CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEE--------cCcccccccccccH
Confidence 4565 56778899999999999999887 777 888 78899987 77788 999
Q ss_pred HHHHHHHHhCCCCcccEEEeeeccccCC---CcEEEEEeeecCCCCCCCCCCCCC
Q psy6110 60 EQIHEHIQQLNFRDCHAKIRQVPVTQQF---PTVKQVEESLPPVTQPPSPPADPT 111 (174)
Q Consensus 60 e~I~eki~sL~f~~~k~~I~SiDaQpS~---GILI~VtG~ls~~~~p~~~~~~~~ 111 (174)
++|.+++..|| .++|.|.++|||+.+ .+||.|.|+|+++++. +.++.++
T Consensus 89 ~~fqk~w~~lP--~SqHqL~SlDahpIpGq~T~lI~asGkVrFDesg-r~~fgQs 140 (201)
T 1q42_A 89 LQFQKKWLQTP--LSSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSG-RNRLGES 140 (201)
T ss_dssp HHHHHHHHTSC--CEEEEEEEEEEEEETTTTEEEEEEEEEEEEBCSS-CCTTSCC
T ss_pred HHHHHHHHhCC--CcceeeeeeecceeCCCcEEEEEEeEEEEECCCC-cCcCCCc
Confidence 99999999999 669999999999997 5999999999998876 4444443
No 13
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.22 E-value=2.3e-11 Score=100.32 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHHhhccC-----chhHhhccc-cCCceeec---CC-C------------------C----------
Q psy6110 7 PSPQCVGREFVRQYYTLLNQA-----PAHLHRFYS-ENSLFIHG---GL-D------------------A---------- 48 (174)
Q Consensus 7 ps~~~VG~~FV~qYYt~L~~~-----p~~L~rFY~-~~S~lv~g---g~-d------------------~---------- 48 (174)
.....++..|+++||..+|++ |..|..+|+ ++|.|+-. .. + +
T Consensus 10 ~~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~ 89 (205)
T 3nv0_A 10 DEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFA 89 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccH
Confidence 345679999999999999997 999999999 68888621 00 0 0
Q ss_pred CCcCccccccHHHHHHHHHhCCCCcccEEEee--eccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccc
Q psy6110 49 PNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQ--VPVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWN 124 (174)
Q Consensus 49 ~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~S--iDaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~ 124 (174)
.........|.++|.++|.+|| .++|.+.+ +|||+.. +|+|.|+|.++...+...+ .-.++..|.|
T Consensus 90 ~~r~~~L~~G~~~I~~~L~~LP--~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~--------~~~~~~~r~F 159 (205)
T 3nv0_A 90 ANRASRISHGAMDIVVALSRLP--ATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKP--------ENTEEHDNYF 159 (205)
T ss_dssp TSSCCSCEEHHHHHHHHHHHSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSC--------CSCSTTCEEE
T ss_pred HHHHHHHhhCHHHHHHHHHhCC--CeEEecCceEEEEEEeCCCeEEEEEEEEEEEccccccc--------ccCCCCCcee
Confidence 0112224479999999999999 56899986 8999987 6999999999865100000 0124567999
Q ss_pred cccceecCCC
Q psy6110 125 EQTPVEAPRS 134 (174)
Q Consensus 125 ~~~~~~~~~~ 134 (174)
.|||+++|..
T Consensus 160 sRtFiL~P~~ 169 (205)
T 3nv0_A 160 TRTFMVAPRG 169 (205)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEEEECC
Confidence 9999999964
No 14
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.07 E-value=4.6e-10 Score=91.50 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=72.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCc-----hhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHH-hCCCCcc
Q psy6110 1 MVMEVTPSPQCVGREFVRQYYTLLNQAP-----AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ-QLNFRDC 74 (174)
Q Consensus 1 ~~m~~~ps~~~VG~~FV~qYYt~L~~~p-----~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~-sL~f~~~ 74 (174)
|||. .-.--+.++.||++||..|+..+ .-|..|+...+.++. +|+.+-+..+..+.+. +++ .+
T Consensus 8 ~~~~-~~~~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~--------NG~p~a~p~~fqeiw~~Q~p--~T 76 (184)
T 1of5_B 8 MVMN-DANQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIF--------NATPFAQATVFLQMWQNQVV--QT 76 (184)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEE--------TTEEESCHHHHHHHHHHHSC--CC
T ss_pred cccC-CccchhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEE--------CCeEcCCHHHHHHHHHhcCC--Cc
Confidence 6777 44455689999999999999988 889999887778764 8888988999999998 888 56
Q ss_pred cEEEeeeccccCC---CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110 75 HAKIRQVPVTQQF---PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134 (174)
Q Consensus 75 k~~I~SiDaQpS~---GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (174)
+|+|+++|||-+. +|+|+|.|++.+++.. + + -+.++++|+|..
T Consensus 77 ~hel~S~D~HVIngsgsivv~VsgkVRFdEsg-r---d-------------~fgEtfvLvpn~ 122 (184)
T 1of5_B 77 QHALTGVDYHAIPGSGTLICNVNCKVRFDESG-R---D-------------KMGQDATVPIQP 122 (184)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEECC----------------------------------
T ss_pred eEEEEeEEEEEECCCCeEEEEEEEEEEECCCC-C---C-------------CCCCeEEECCCC
Confidence 9999999999987 5999999999997653 1 1 478899999874
No 15
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=94.52 E-value=0.034 Score=41.90 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCC--ceeecCCCCCCcCccccccHHHHHHHHHhCCCC---cccEEEeeeccccCC
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENS--LFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR---DCHAKIRQVPVTQQF 87 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S--~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~---~~k~~I~SiDaQpS~ 87 (174)
.+-.+.||.-|++ +.+.|..+|.++. .++|. .+....|.++|.+.+..+ |. ..++++..+......
T Consensus 11 ~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p-------~g~~l~G~~ai~~~w~~~-f~~~~~~~i~~~~v~v~~~g 82 (144)
T 3gwr_A 11 EAAEDAFYAAFEARSLDDMMAVWARDDHVACIHP-------LAAPLNGRAAVAAGWRSM-FGAAGRFRLQVKAVHEIRQA 82 (144)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECT-------TCCCEESHHHHHHHHHHH-HHHHCCEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECC-------CCCCcccHHHHHHHHHHH-HcCCCcEEEEEEEEEEEecC
Confidence 3456778888884 7999999999884 44442 234689999999887643 21 234444444444333
Q ss_pred -CcEEEEEeeecCC--CCCCCCCCCCCCCCCCCccccccccccceec--CCCCC
Q psy6110 88 -PTVKQVEESLPPV--TQPPSPPADPTPPSPPKEDEWKWNEQTPVEA--PRSPS 136 (174)
Q Consensus 88 -GILI~VtG~ls~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 136 (174)
..++.+...+... +.+. ...-.+++.+=.+|+||.-.--.-.+ |+++.
T Consensus 83 d~A~v~~~e~~~~~~~~g~~-~~~r~T~V~~r~~g~WrivhhH~S~~~~~~~~~ 135 (144)
T 3gwr_A 83 DHVIRIVDEFLTIGDETAPR-PAILATNVYRREADGWRMVLHHASPLQVGAKAG 135 (144)
T ss_dssp SEEEEEEEEEEEETTCSSCC-CCEEEEEEEEECSSSEEEEEEEEEECC------
T ss_pred CEEEEEEEEEEEecCCCCce-eeEEEEEEEEEECCEEEEEEEecCCCCCCCccc
Confidence 2444455555542 2222 34455677777889999765433334 66543
No 16
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=93.42 E-value=0.16 Score=37.23 Aligned_cols=69 Identities=17% Similarity=0.079 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCC-CCCcCccccccHHHHHHHHHhCC--CCcccEEEeeecc
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLD-APNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPV 83 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d-~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDa 83 (174)
+.||+.||..|++ +.+.|..+|.++..+.-.+.. ...+.| ...|.++|.+.+..+. |..+++++..+-+
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g-~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFG-ARQGKAAVLEVCRQIADSVRIYRYHRESVML 79 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCE-EEESHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCc-cccCHHHHHHHHHHHHHhcCcceEEEEEEEE
Confidence 7899999999995 689999999998766432210 001222 5789999999888663 3345666665543
No 17
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=92.95 E-value=0.17 Score=37.54 Aligned_cols=61 Identities=16% Similarity=0.353 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeee
Q psy6110 15 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV 81 (174)
Q Consensus 15 ~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~Si 81 (174)
+.|+.||..+++ +.+.|..||.++..+.- -..+....|.++|.+.+..+. |.+.+++|..+
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d------~~~g~~~~Greai~~~~~~~~~~~~d~~~~v~~~ 92 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVD------HAIGATMTGREQISGWKARTDAMIENVHVTITKA 92 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEE------TTTTEEEESHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEec------cCCCceEecchhhhhhhhhhhccCCccceeEeEE
Confidence 578999999985 69999999999988742 124557899999999887652 44556666544
No 18
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=92.75 E-value=0.083 Score=39.79 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC---CCCcccEE--Eeeecccc
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL---NFRDCHAK--IRQVPVTQ 85 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL---~f~~~k~~--I~SiDaQp 85 (174)
--.+++..|+..++. +.+.+..+|.+++.++. ..|....|.++|.+.+..+ .+....+. +..+....
T Consensus 17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~-------~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 89 (172)
T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFIT-------FEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVN 89 (172)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC-------TTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEe-------CCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeC
Confidence 446789999999985 69999999999999863 2456789999999987653 23333332 33332211
Q ss_pred CCCcEEEEEeeecCCCCCCC---CCCCCCCCCCCCccccccccccc
Q psy6110 86 QFPTVKQVEESLPPVTQPPS---PPADPTPPSPPKEDEWKWNEQTP 128 (174)
Q Consensus 86 S~GILI~VtG~ls~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~ 128 (174)
.-..++.+.+.+...+.... .....+.+..=.+|+||.-.-..
T Consensus 90 ~d~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~ 135 (172)
T 3cu3_A 90 SQLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLN 135 (172)
T ss_dssp TTEEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEc
Confidence 00133333444655443111 11222333334578888765433
No 19
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=92.27 E-value=0.12 Score=37.28 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccC-c----hhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEe-eecccc
Q psy6110 14 REFVRQYYTLLNQA-P----AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIR-QVPVTQ 85 (174)
Q Consensus 14 ~~FV~qYYt~L~~~-p----~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~-SiDaQp 85 (174)
++++++|+..+++. + +.|..+|.++..+.- ....+.|.++|.+.|..+ .|.++++.+. .++.+.
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~d--------P~~~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVD--------PLMQGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEEC--------SSCEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEEC--------CCCCcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 56788888888753 2 579999999999852 223599999999988654 2557899887 788876
Q ss_pred C
Q psy6110 86 Q 86 (174)
Q Consensus 86 S 86 (174)
.
T Consensus 78 ~ 78 (121)
T 3dxo_A 78 N 78 (121)
T ss_dssp T
T ss_pred C
Confidence 4
No 20
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=92.00 E-value=0.97 Score=35.47 Aligned_cols=77 Identities=13% Similarity=0.264 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccCCC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQFP 88 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS~G 88 (174)
...+|...|-..|.. +...|.+||..+|.|.- --.+...+|.+.|.++|.+- ..-...+.|...=+- |
T Consensus 21 ~EqqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D------~ta~~~YtG~r~Ii~Fl~RaH~gvLey~fnieHmfns---G 91 (154)
T 3gzb_A 21 QEQQLAVKYMDALTEHDYKTLITFYNRDSIFFD------KTANRKYTGGRFIIDFLERAHQGVLEYDFNIEHMYNA---G 91 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTCCTTCEEEE------TTTTEEEESHHHHHHHHHHHTTTCCCCEEEEEEEEEE---T
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHhCccceeee------eccCcceeCcHHHHHHHHHHhhhheeeccChhhhccC---C
Confidence 345778888888887 89999999999999963 23567899999999999852 112234556654221 6
Q ss_pred cEEEEEeee
Q psy6110 89 TVKQVEESL 97 (174)
Q Consensus 89 ILI~VtG~l 97 (174)
=||+.+|.-
T Consensus 92 sLVVmiGnY 100 (154)
T 3gzb_A 92 SLVVMIGNY 100 (154)
T ss_dssp TEEEEEEEE
T ss_pred cEEEEEcce
Confidence 677777763
No 21
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=91.51 E-value=0.4 Score=34.71 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
++.++.|+..++. +.+.|..+|.+++.++. ..|....|.++|.+.+..+
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~-------~~g~~~~G~~aI~~~~~~~ 55 (142)
T 2gxf_A 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVV-------KPGMIARGKEEIKKAFITI 55 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEEC-------SSSCEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEc-------CCCCcccCHHHHHHHHHHH
Confidence 4668899999985 68999999999998863 2366799999999998854
No 22
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=91.41 E-value=0.093 Score=38.91 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeeccccCC
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVTQQF 87 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQpS~ 87 (174)
+--++.+++|+..++. +.+.|..+|.++..+.. ...+....|.++|.+.+..+- +....+.+..+... .
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~------~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~~--~ 91 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLP------TVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRLL--D 91 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEC------SSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEEC--S
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEec------CCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEEe--c
Confidence 3456778889988884 69999999999987752 123456789999998887541 11223333333321 1
Q ss_pred CcEEEEEeeecC-----CCCCCCCCCCCCCCCCCCccccccccccceecCCCC
Q psy6110 88 PTVKQVEESLPP-----VTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSP 135 (174)
Q Consensus 88 GILI~VtG~ls~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (174)
+=+..|.|.... ++.+..-..--+.+..=.+|+||.-..-.-.+|+.+
T Consensus 92 gd~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~~~ 144 (156)
T 3h51_A 92 DDSAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPEVD 144 (156)
T ss_dssp SSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSCCC
T ss_pred CCeEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCccc
Confidence 222333444322 222111111223444456889999888777777644
No 23
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=91.10 E-value=0.66 Score=31.95 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110 8 SPQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68 (174)
Q Consensus 8 s~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s 68 (174)
+..+.=++.+++|+..++. +.+.|..+|.++..+..+ .+..+.|.++|.+.+..
T Consensus 3 ~~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~-------~~~~~~G~~~i~~~~~~ 57 (129)
T 3hx8_A 3 SAKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPP-------DMARVDGRQNIQKLWQG 57 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECT-------TSCCEESHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCC-------CCCcccCHHHHHHHHHH
Confidence 3445557889999999985 689999999999998532 34468899999988764
No 24
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=91.09 E-value=0.22 Score=35.21 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCC-CCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccC
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDA-PNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQ 86 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~-~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS 86 (174)
+-.+++++.||..+++ +.+.|..+|.++..+.-..... ...++....|.++|.+.+..+ .|.++++++..+.+
T Consensus 8 ~~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~~~--- 84 (122)
T 3h3h_A 8 AFAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIPDLHFEWIATLA--- 84 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCTTCCCEEEEEEE---
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCCCcEEEEEEEEe---
Confidence 3457899999999985 6999999999999875210000 001235789999999988753 24466677655432
Q ss_pred CCcEEEEEee
Q psy6110 87 FPTVKQVEES 96 (174)
Q Consensus 87 ~GILI~VtG~ 96 (174)
.+..+.+.+.
T Consensus 85 ~~~~~~~~~~ 94 (122)
T 3h3h_A 85 GVDSVAIHYR 94 (122)
T ss_dssp CSSEEEEEEE
T ss_pred cCcEEEEEEE
Confidence 1334445554
No 25
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=89.84 E-value=0.27 Score=36.83 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcc------CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeee
Q psy6110 15 EFVRQYYTLLNQ------APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQV 81 (174)
Q Consensus 15 ~FV~qYYt~L~~------~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~Si 81 (174)
.=|++||..++. +.+.|..||.+++.+.. .+....|.++|.+.+..+ .|..++|.+...
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~--------~~~~~~G~~ai~~F~~~~~~a~~~~~~~~~~~ 72 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVL--------NGQEQHGIDAWKQFVRMVFTANQDIKHMYAGW 72 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEE--------TTEEEESHHHHHHHHHHHHHHEEEEEEEECCC
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecC--------CCCCcCChHHHHHHHHHHHhhCcCceEEEEEE
Confidence 348999999983 37889999999999821 344678999999999865 355677766654
No 26
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=89.46 E-value=0.44 Score=34.11 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHH
Q psy6110 10 QCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~ 67 (174)
++|-..|-++---+-..+.+.|..+|.++..+++- ..+....|.++|.+ +.
T Consensus 14 ~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~------~~~~~~~G~~~i~~-~~ 64 (129)
T 2rcd_A 14 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRY------GAGENLYGIEEIRA-FR 64 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEE------ETTEEEESHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEE------CCCCccCCHHHHHH-HH
Confidence 34555554433344446799999999999876542 13456789999999 55
No 27
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=88.04 E-value=1.4 Score=32.34 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s 68 (174)
-++++..|+..++. +.+.|..+|.++..++. .|....|.++|.+.+..
T Consensus 21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~--------~g~~~~Gr~aI~~~~~~ 69 (143)
T 4i4k_A 21 VAALPARIVAAWADHDADRFADVFAEDGTMIL--------PGLFRKGRENIRTHMAA 69 (143)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEE--------TTEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcCceEEe--------CCCeecCHHHHHHHHHH
Confidence 46788999999985 68999999999999864 34568999999988764
No 28
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=87.84 E-value=0.55 Score=33.19 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV 83 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa 83 (174)
++.|+.||..+++ +.+.|..||.++..+ | + ...|.+++.+.+..+ .|.+.+++|..+=+
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~-~---------~-~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 67 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEH-N---------G-RPFGLSGYRDMLVKDFADIPDLRFEAEILVS 67 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEE-T---------T-BCCHHHHHHHHHHHHHHHCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEe-C---------C-CCCCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 5778999998885 578999999998654 2 2 468899988877654 24466677665444
No 29
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=87.66 E-value=1.3 Score=33.05 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccc
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVT 84 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQ 84 (174)
-++.|+.||..+++ +.+.|..+|.++..+... ......|.++|.+.+..+ .|.+.+++|..+=+.
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p-------~~g~~~G~e~~~~~~~~~~~~~pd~~~~i~~~~~~ 103 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTL-------PKGRPQGTEGLKFAAQNFRKIVPNIHCEIEDLLVV 103 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSC-------CTTCCSSHHHHHHHHHHHHTTCCSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecC-------CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEEE
Confidence 47789999999986 689999999998665211 112578999999888754 355777777665443
No 30
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=87.35 E-value=0.53 Score=31.87 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
--++.|++||..+++ +.+.|..+|.++..+... ..+....|.++|.+.+..+
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~------~~~~~~~G~~~i~~~~~~~ 58 (125)
T 1ohp_A 6 HMTAVVQRYVAALNAGDLDGIVALFADDATVENP------VGSEPRSGTAAIREFYANS 58 (125)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESS------TTSCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECC------CCCCCccCHHHHHHHHHHh
Confidence 457789999999985 689999999999876531 1234789999999998865
No 31
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=86.46 E-value=1.1 Score=32.21 Aligned_cols=51 Identities=14% Similarity=0.368 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
--++.|+.||..+++ +.+.|..+|.++..+...+ .....|.++|.+.+..+
T Consensus 23 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~-------~~~~~G~~~i~~~~~~~ 74 (149)
T 1nww_A 23 PDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMP-------LPPAYGRDAVEQTLAGL 74 (149)
T ss_dssp HHHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETT-------SCCEESHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCC-------CCCccCHHHHHHHHHHH
Confidence 346789999999886 6899999999999875421 13578999999988765
No 32
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=86.26 E-value=3.8 Score=29.48 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 70 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~ 70 (174)
--++-|++||..|++ +.+.|..||.++..+.+. ..+....|.++|.+.+...+
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P------~~~~~~~Gr~~~~~~~~~~~ 59 (128)
T 3en8_A 6 KIREALNAHWQASAAGDFDAEHDIYDDDAICDYP------QSGERILGRMNLQALRSHHP 59 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEET------TTTEEEESHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECC------CCCCEEECHHHHHHHHHHCC
Confidence 346789999998885 689999999999987652 12446889999999887765
No 33
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=86.06 E-value=0.65 Score=32.35 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CC-cccEEEeeec
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FR-DCHAKIRQVP 82 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~-~~k~~I~SiD 82 (174)
.--++.++.||..++. +.+.+..+|.++..+... .+....|.++|.+.+..+- +. ...+++..+.
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~-------~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~ 79 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGP-------GRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVV 79 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECT-------TSCCEESHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECC-------CCCcccCHHHHHHHHHHHHhhcCCceeEEEEEEE
Confidence 3456789999999995 689999999999987642 1234679999998887642 21 3344555544
No 34
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=86.06 E-value=1.8 Score=30.68 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC-CCCcccEEEeee
Q psy6110 10 QCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-NFRDCHAKIRQV 81 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~f~~~k~~I~Si 81 (174)
.+-.++.|++||..+++ +.+.|..+|.++..+...+ ....+..+.|.++|.+.+..+ .|.+.+++|..+
T Consensus 16 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~---~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 86 (129)
T 3fh1_A 16 SEQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTV---PAPDGARHAGRQACVQLWSAIATQPGTRFDLEET 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSC---STTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCC---CCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEE
Confidence 34567899999999985 6899999999988875321 112455679999999988752 133556666543
No 35
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=85.92 E-value=1.7 Score=31.25 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=46.8
Q ss_pred HHHHHHHHHH-hhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccc
Q psy6110 13 GREFVRQYYT-LLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVT 84 (174)
Q Consensus 13 G~~FV~qYYt-~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQ 84 (174)
-++.|++||. .++ .+.+.+..+|.++..+.|.-. ..+ .....|.++|.+.+..+ .|.+.+++|..+-+.
T Consensus 8 ~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~--~~~-~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~~ 80 (146)
T 3f9s_A 8 AKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPG--DPW-EGRELDVAGYKERVKTLRAAFPDQCFDIQGLFAD 80 (146)
T ss_dssp HHHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTT--CTT-TTCEECHHHHHHHHHHHHHHSTTCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCC--CCC-CCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEEEe
Confidence 4567888996 776 468999999999887455210 001 12578999999887754 255677877765443
No 36
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=85.44 E-value=0.69 Score=32.15 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
+--++.+++||..+++ +.+.|..+|.++..+... ..+....|.++|.+.+..+
T Consensus 7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p------~~~~~~~G~~~i~~~~~~~ 60 (131)
T 1oh0_A 7 QEVQGLMARYIELVDVGDIEAIVQMYADDATVEDP------FGQPPIHGREQIAAFYRQG 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESS------TTSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcC------CCCCCcccHHHHHHHHHHH
Confidence 3457789999999986 689999999999887531 1234789999999988765
No 37
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=85.32 E-value=2.1 Score=31.43 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110 10 QCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 70 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~ 70 (174)
++|-..|.+.|--+...+.+.|..+|.++..+++- ..+....|.++|..+...+.
T Consensus 11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~------~~g~~l~G~~~I~a~r~~~~ 65 (129)
T 2owp_A 11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRY------GIAEVQHGGEAIRAWRERCE 65 (129)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEE------CSSCEEESHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEe------CCCCccCCHHHHHHHHHhcC
Confidence 45666665555555557899999999999875542 13567899999999666553
No 38
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=85.02 E-value=2.5 Score=37.00 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh-CCCCcccEEEeeeccccCC--
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ-LNFRDCHAKIRQVPVTQQF-- 87 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s-L~f~~~k~~I~SiDaQpS~-- 87 (174)
|-+.=|.+|+..||. +-+.+..+|.++..+.= -++ .+..|+++|...+.. +. +.+.+...-=+.+..
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~Lep------Pf~-~PIvGreAI~~y~~~eaq--~~~l~P~~g~~ep~e~g 263 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQP------PFQ-RPIVGKENVLRFFREECQ--NLKLIPERGVTEPAEDG 263 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC------TTS-CCEESHHHHHHHHHHHCT--TCEEEEEEEEEEECGGG
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeCC------CCC-CCccCHHHHHHHHHHHhc--cCEEeeccCccccccCC
Confidence 335668999999996 58999999999999842 355 789999999999974 33 345555554444544
Q ss_pred CcEEEEEeeecC
Q psy6110 88 PTVKQVEESLPP 99 (174)
Q Consensus 88 GILI~VtG~ls~ 99 (174)
+.-+.|+|+++.
T Consensus 264 ~~qi~vtGkVqT 275 (323)
T 3mg1_A 264 FTQIKVTGKVQT 275 (323)
T ss_dssp CEEEEEEEEEEC
T ss_pred CceEEEEEEEEc
Confidence 588999999965
No 39
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=84.69 E-value=1.6 Score=32.14 Aligned_cols=63 Identities=8% Similarity=0.166 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV 83 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa 83 (174)
-.++.|+.||..++. +.+.+..+|.++..+.. +....|.++|.+.+..+ .|.+.+++|..+-+
T Consensus 5 ~~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~---------p~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 70 (158)
T 2gey_A 5 ERKALCLEMVAAWNRWDLSGIIKHWSPDIVHYS---------EDNEVSSADMVKLMEGGLKAFPDLQLEVKSIMA 70 (158)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEE---------TTEEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeC---------CCCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 346788999998885 68899999999876542 23578999998887754 24466777766544
No 40
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=83.60 E-value=2.1 Score=31.10 Aligned_cols=64 Identities=11% Similarity=0.211 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV 83 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa 83 (174)
-.++.|++||..++. +.+.+..+|.++..+.. . .....|.++|.+.+..+ .|.+.+++|..+=+
T Consensus 5 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~------~--~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (152)
T 2gex_A 5 ANKERCLEMVAAWNRWDVSGVVAHWAPDVVHYD------D--EDKPVSAEEVVRRMNSAVEAFPDLRLDVRSIVG 71 (152)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC------T--TSCEECHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeC------C--CCCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 346788999988875 57899999999876531 1 33678999998887654 24466777766543
No 41
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=82.98 E-value=0.39 Score=35.10 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHH-HHH
Q psy6110 12 VGREFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE-HIQ 67 (174)
Q Consensus 12 VG~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~e-ki~ 67 (174)
--++.+++|+.-++ .+.+.|..+|.++..+.++ .+ ...|.++|.+ .+.
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~-------~g-~~~g~~~~~~~~~~ 80 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEG-------GK-VERSLTEYANHHML 80 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEET-------TE-EECSHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeC-------CC-ccCCHHHHHHHhHH
Confidence 34567888888887 5799999999999887652 12 2789999988 443
No 42
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=82.79 E-value=0.98 Score=32.14 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCC-cccEEEeeecc
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFR-DCHAKIRQVPV 83 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~-~~k~~I~SiDa 83 (174)
.++.|++||..+++ +.+.+..+|.++..+... ..+....|.++|.+.+..+ .|. +.+++|..+=+
T Consensus 4 ~~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 72 (144)
T 1sjw_A 4 QTEIVRRMVSAFNTGRTDDVDEYIHPDYLNPAT------LEHGIHTGPKAFAQLVGWVRATFSEEARLEEVRIEE 72 (144)
T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGG------GGGTCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCcCeEEccC------CCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEEE
Confidence 46788999998875 678999999998664211 1111238999998887755 244 56777765443
No 43
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=82.76 E-value=1.8 Score=33.58 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 5 VTPSPQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 5 ~~ps~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
......+.-++.|++||..++. +.+.|..|+.++..+..+. ...+....|.++|.+.+..+
T Consensus 4 ~~~Ms~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~----~~p~~~~~Greai~~~f~~~ 65 (156)
T 3g16_A 4 APTLSRAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPA----GMYGGAFRGAAQIAHRWRTA 65 (156)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBT----TSTTSCEESHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCC----CCCCCCccCHHHHHHHHHHH
Confidence 3445567889999999999996 5899999999988864321 12255678999999988754
No 44
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=82.40 E-value=1.7 Score=30.10 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeecc
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPV 83 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDa 83 (174)
.+.|+.||..|+. +.+.+..||.++... |. . ..+....|.++|.+.+..+- |.+.+++|..+=+
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~-h~-~----~~~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~~~ 71 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACE-AN-Y----RGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQQ 71 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEE-EE-T----TSCEEECHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEE-Ee-C----CCCccccCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 4679999999985 689999999987553 31 1 01346789999998876541 2245666665433
No 45
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=82.35 E-value=0.5 Score=35.21 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhccCchhHhhccccCC--ceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 11 CVGREFVRQYYTLLNQAPAHLHRFYSENS--LFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~~p~~L~rFY~~~S--~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
+|-..|-+.+--+...+.+.|-.+|.++. .+++. .| ...|.++|.+.+.+-
T Consensus 11 ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~-------~g-~~~G~~~i~~~~~~~ 63 (145)
T 3soy_A 11 EITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHP-------RG-HERGWSQIAENFYGT 63 (145)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEET-------TE-EEESHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcC-------CC-cccCHHHHHHHHHHh
Confidence 45555544444445567999999997764 34431 23 478999999888653
No 46
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=82.22 E-value=2.1 Score=30.37 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHH-HHHHhCC--CCcccEEEeee
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIH-EHIQQLN--FRDCHAKIRQV 81 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~-eki~sL~--f~~~k~~I~Si 81 (174)
++.|++||..+++ +.+.|..+|.++..+...+. . -.+....|.++|. +.+..+. |...++++..+
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~--~-p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAG--F-PCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDAL 83 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTT--S-TTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCC--C-ccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEE
Confidence 5678899988875 58999999999988654220 0 1124678999996 4565442 33455555544
No 47
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=82.21 E-value=1.1 Score=32.82 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCC-cccEEEeeecc
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFR-DCHAKIRQVPV 83 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~-~~k~~I~SiDa 83 (174)
-.++.|++||..+++ +.+.|..+|.++..+... ..+....|.++|.+.+..+ .|. +.+++|..+=+
T Consensus 12 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p------~~~~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~~ 81 (153)
T 2f99_A 12 EQIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGT------LEFTSLRGPELFAINVAWVKKTFSEEARLEEVGIEE 81 (153)
T ss_dssp HHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGG------TTTCCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecC------CCCCCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEEE
Confidence 356788999998884 678999999998664211 1122248999998887754 244 56677665433
No 48
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=81.64 E-value=1.3 Score=31.35 Aligned_cols=66 Identities=5% Similarity=-0.007 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCC-CCCcCccccccHHHHHHHHHhCC--CCcccEEEe
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLD-APNRETKQVVGQEQIHEHIQQLN--FRDCHAKIR 79 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d-~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~ 79 (174)
.++.+++||..++. +.+.|..+|.++..+...... ....+|....|.++|.+.+..+. + .+++.+.
T Consensus 9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~-~~~~~~~ 78 (139)
T 2a15_A 9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN-RLTVTCE 78 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTT-TCEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhcccc-eeEEecc
Confidence 45678999999985 689999999999887532100 00013344799999999987652 3 4455443
No 49
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=81.37 E-value=0.97 Score=31.81 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
--++.|++||..+++ +.+.|..+|.++..+...+. .--+....|.++|.+.+..+
T Consensus 6 ~~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~---~p~~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 6 ENVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGE---WPLAGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSS---STTCEEEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCC---CccceEEeCHHHHHHHHHHH
Confidence 346778899988885 68999999999987654220 00123578999998888765
No 50
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=81.36 E-value=2.3 Score=30.73 Aligned_cols=63 Identities=8% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeec
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVP 82 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiD 82 (174)
-.++.|++||..+++ +.+.|..+|.++..+... .+....|.++|.+.+..+. | +.+++|..+-
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~-------~~~~~~G~~~i~~~~~~~~~~~-~~~~~i~~~~ 81 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENV-------GFSRIRGGRRTATLLRRMQGRV-GFEVKIHRIG 81 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEET-------TTEEEECHHHHHHHHHTTTTTC-EEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeC-------CCCCccCHHHHHHHHHHHHhhc-CcEEEEEEEE
Confidence 457789999998885 689999999999766421 1245789999999998764 3 4455555543
No 51
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=80.66 E-value=3.3 Score=33.10 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeeccccCC-C
Q psy6110 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVTQQF-P 88 (174)
Q Consensus 12 VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQpS~-G 88 (174)
--++=|++|+..+.++++.+..||.++..+.+...+ ........|.++|.+.+..+. |.+ .++..++...+. +
T Consensus 42 ~nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~--~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDp 117 (185)
T 3jum_A 42 HNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTD--SGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDP 117 (185)
T ss_dssp HHHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCT--TSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSST
T ss_pred HHHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCC--CCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCC
Confidence 345668999999999999999999999998663211 112235889999999986542 332 344445544443 3
Q ss_pred --cEEEEEe--eecCCCC
Q psy6110 89 --TVKQVEE--SLPPVTQ 102 (174)
Q Consensus 89 --ILI~VtG--~ls~~~~ 102 (174)
|++-..| ++...|.
T Consensus 118 d~VvvE~~~~Gtv~~TGk 135 (185)
T 3jum_A 118 NWFWVECRGEGAIVFPGY 135 (185)
T ss_dssp TEEEEEEEEEEEECCTTS
T ss_pred CEEEEEEEEEEEEcCCCC
Confidence 4444443 3444443
No 52
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=79.99 E-value=7.2 Score=27.63 Aligned_cols=113 Identities=9% Similarity=0.068 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC-C-C-CcccEEEeeecccc
Q psy6110 10 QCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-N-F-RDCHAKIRQVPVTQ 85 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~-f-~~~k~~I~SiDaQp 85 (174)
++--++++++|+..+++ +.+.+..+|.++..+... ..+....|.++|.+.+... . + ...++++..+..+-
T Consensus 7 ~~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~------~~~~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (142)
T 3f7s_A 7 ESEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDA------IQALQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHA 80 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECS------SSSSCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecC------CCCccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEE
Confidence 34456778889988874 689999999998876542 1223456999998876431 1 1 24556666554433
Q ss_pred CCCcEEEEEeeecCCCC---CCCCCCCCCCCCCCCcccccc-ccccce
Q psy6110 86 QFPTVKQVEESLPPVTQ---PPSPPADPTPPSPPKEDEWKW-NEQTPV 129 (174)
Q Consensus 86 S~GILI~VtG~ls~~~~---p~~~~~~~~~~~~~~~~~~~~-~~~~~~ 129 (174)
. |=+..|+|....... ......--+.+..=.+++||. .++.++
T Consensus 81 ~-gd~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g~W~ivh~H~S~ 127 (142)
T 3f7s_A 81 A-GDLALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHEHWSA 127 (142)
T ss_dssp E-TTEEEEEEEEEEEESSCGGGCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred c-CCEEEEEEEEEEeeecCCCcceeeEEEEEEEEeCCEEEEEEEeecc
Confidence 2 222233333222111 011111223444555788884 444444
No 53
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=79.70 E-value=2 Score=29.95 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCc-CccccccHHHHHHHHHhCC--CCcccEEEeee
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNR-ETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV 81 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~-eg~~~~G~e~I~eki~sL~--f~~~k~~I~Si 81 (174)
++-|++||..+++ +.+.+..+|.++..+...+.. ... -+....|.++|.+.+..+. |.+.+++|..+
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~-~p~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGM-SPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDEF 76 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGG-GGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCC-CCcccCCcCcCHHHHHHHHHHHHhhCCceEEEEeEE
Confidence 4568888888885 689999999998876542100 000 0146889999999988763 33455665543
No 54
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=79.04 E-value=2.1 Score=35.44 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 10 QCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
++--++.|+.||..++. +.+.|..+|.++..+... .......|.++|.+.+..+
T Consensus 137 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P------~~~~~~~G~~ai~~~~~~~ 191 (283)
T 3rga_A 137 EERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDP------VGSWTRTGLEALRAHATMA 191 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESS------TTSCEEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECC------CCCCcccCHHHHHHHHHHh
Confidence 45678899999999984 699999999999997531 1234689999999988755
No 55
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=78.87 E-value=2.6 Score=29.70 Aligned_cols=78 Identities=10% Similarity=-0.034 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhc-cCchhHhhcc--ccCCceeecCCCCCCcCccccccHHHHHHHHHhC-C--CCcccEEEeeeccccCC
Q psy6110 14 REFVRQYYTLLN-QAPAHLHRFY--SENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-N--FRDCHAKIRQVPVTQQF 87 (174)
Q Consensus 14 ~~FV~qYYt~L~-~~p~~L~rFY--~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~--f~~~k~~I~SiDaQpS~ 87 (174)
++-++.+|.-++ .+.+.+..+| .++..++. .+....|.++|.+.+..+ + +.....++.-+|.+...
T Consensus 8 ~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~--------~~~~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 79 (122)
T 3b7c_A 8 VQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLIS--------NGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLS 79 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEEC--------SSCEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEEC--------CCccccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcC
Confidence 345667777776 5799999999 67766653 123689999999977652 1 11133444444443222
Q ss_pred CcEEEEEeeecC
Q psy6110 88 PTVKQVEESLPP 99 (174)
Q Consensus 88 GILI~VtG~ls~ 99 (174)
+-+..|.|.+..
T Consensus 80 ~~~a~v~~~~~~ 91 (122)
T 3b7c_A 80 NYAAMVVGRWDL 91 (122)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCEEEEEEEEEE
Confidence 334445555544
No 56
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=78.67 E-value=2.4 Score=31.42 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
...++.++.||..+++ +.+.|..+|.++..+.- ......+.|.++|.+.|..+
T Consensus 9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~------P~~~~~~~G~~~v~~~~~~~ 62 (143)
T 3mso_A 9 ANAAATLAEWHGLIARRDLSGLPRLLHPDAVFRS------PMAHKPYAGAPVVSMILNTV 62 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEEC------SSCSSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEEC------CCCCCCccCHHHHHHHHHHH
Confidence 3457889999998885 68999999999999852 12335789999999988754
No 57
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=78.44 E-value=2 Score=31.67 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
.++.|+.||..+++ +.+.|..+|.++..+.. -.+....|.++|.+.+..+
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~-------p~g~~~~G~e~i~~~~~~~ 72 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDI-------NQGERQMGKARFAAFMEKM 72 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEC-------TTSCEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEEC-------CCCCCcCCHHHHHHHHHHH
Confidence 46789999998885 68999999999998521 1345789999999988865
No 58
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=77.79 E-value=2.3 Score=29.90 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 70 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~ 70 (174)
.++.|+.||..++. +.+.|..+|.++..+.. -.+....|.++|.+.+..++
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~-------p~~~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDL-------NQGPREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEC-------TTSCEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEc-------CCCCceEcHHHHHHHHHHHh
Confidence 56889999999974 68999999999975321 12457899999999888764
No 59
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=76.98 E-value=2.7 Score=31.75 Aligned_cols=53 Identities=8% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
...+.+++.|+..+++ +.+.|..+|.++..+.= ......+.|.+.|.+.|..+
T Consensus 20 ~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~------P~~~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 20 AAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSN------PSTFDPYHGKGPLMVILPAV 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEEC------SSCSSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEEC------CCCCCCcCCHHHHHHHHHHH
Confidence 6778999999999885 68999999999999852 12235689999999988754
No 60
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=76.84 E-value=2.3 Score=30.58 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=45.8
Q ss_pred HHHHHHHHHH-hhcc-C--chhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110 13 GREFVRQYYT-LLNQ-A--PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV 83 (174)
Q Consensus 13 G~~FV~qYYt-~L~~-~--p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa 83 (174)
-++.|+.||. .++. + .+.+..||.++..+.... . ....|.++|.+.+..+ .|.+.+++|..+=+
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~------~-~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 80 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHS------N-QAVEGIEQAIAFNAVLFEGFPRLEVVVENVTV 80 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETT------S-CCEESHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCC------C-CCCCCHHHHHHHHHHHHHhCCCceeEEEEEEE
Confidence 4688999999 7875 5 689999999987764321 1 4678999998887754 24466777765533
No 61
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=76.49 E-value=2.3 Score=29.53 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC-CCCcccEEEee
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-NFRDCHAKIRQ 80 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~f~~~k~~I~S 80 (174)
..+.|+.||..++. +.+.+..+|.++..+... -.+....|.++|.+.+..+ .-.+.++++..
T Consensus 5 ~~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~------~g~~~~~G~~ai~~~~~~~~~~~~~~~~~~~ 68 (123)
T 2k54_A 5 IELPVQKQLEAYNARDIDAFMAWWADDCQYYAF------PATLLAGNAAEIRVRHIERFKEPDLYGELLT 68 (123)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEET------TTEEEEESHHHHHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCHHHHHhhcCCceEEEcC------CCCcccCCHHHHHHHHHHHcCCCCcEEEEEE
Confidence 35679999999985 679999999998876431 0123578999999988753 11234455443
No 62
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=76.35 E-value=2 Score=31.92 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 70 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~ 70 (174)
++.|++||..+++ +.+.|..+|.++..+.....+ ...+..+.|.++|.+.+..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~--~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAP--PGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCC--TTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCC--CCCCcccCCHHHHHHHHHHHH
Confidence 5568899998886 679999999999887542110 011235789999999987653
No 63
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=76.31 E-value=3 Score=30.89 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s 68 (174)
=++++..|...++. +.+.|..+|.++..++. ..|....|.++|.+.+..
T Consensus 8 I~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~-------~~G~~~~Gr~aI~~~~~~ 57 (146)
T 3gzr_A 8 IQALIQAYFTAWNTNAPERFAEIFWPDGSWVN-------VVGMHWRGRDQIVFAHTA 57 (146)
T ss_dssp HHHHHHHHHHHHHTTCGGGSGGGEEEEEEEEC-------TTCCEEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhccCCeEEEc-------CCCCeeeCHHHHHHHHHH
Confidence 36788999999986 69999999999999863 355678999999987753
No 64
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=75.82 E-value=3.8 Score=30.30 Aligned_cols=112 Identities=11% Similarity=0.173 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC-C-C-CcccEEEeeecccc
Q psy6110 10 QCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-N-F-RDCHAKIRQVPVTQ 85 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~-f-~~~k~~I~SiDaQp 85 (174)
+..-++.++.|+.-++. +.+.|..+|.++..+.+. +....|.++|.+.+... . + ....+++..+ +-
T Consensus 16 e~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~--------g~~~~Gr~ai~a~~~~~~~~~~~~~~~~~~~i--~v 85 (139)
T 3rob_A 16 ELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTP--------GRLPFGKEEFLAACEQNDQRVIIEASATFEEI--VI 85 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECT--------TSCCBCHHHHHHHHHHHHHHEEEEEEEEEEEE--EE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECC--------CCCccCHHHHHHHHHHHHHhcCCCCceEEEEE--EE
Confidence 44678899999998885 799999999999998652 23345999998876532 1 1 1223333333 11
Q ss_pred CCCcEEEEEeeecCCCCCC--CCCCC----CCCCC-CCCccccccccccceecC
Q psy6110 86 QFPTVKQVEESLPPVTQPP--SPPAD----PTPPS-PPKEDEWKWNEQTPVEAP 132 (174)
Q Consensus 86 S~GILI~VtG~ls~~~~p~--~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~ 132 (174)
+ |=+-++.|.......+. .++.. ...+. +-.+|.||..-.+.+++|
T Consensus 86 ~-GD~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~~~~~ 138 (139)
T 3rob_A 86 V-EPMAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDANLVVP 138 (139)
T ss_dssp E-TTEEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEECCEE
T ss_pred c-CCeEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhhhccc
Confidence 1 33344444433322110 01110 11123 235777998888777764
No 65
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=74.94 E-value=2.5 Score=30.00 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
--++.|++||..+++ +.+.|..+|.++..+.....+ ...+..+.|.++|.+.+..+
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~--~g~~~~~~G~~~i~~~~~~~ 67 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAP--EGSPKRIEGKAAIYDYIKDY 67 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC--TTSCSEEESHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCC--CCCCccccCHHHHHHHHHHh
Confidence 456789999998875 589999999999887542100 01122579999999988765
No 66
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=74.70 E-value=2 Score=33.72 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhccCchhHhhccccCCc---eeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 11 CVGREFVRQYYTLLNQAPAHLHRFYSENSL---FIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~---lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
+--++-|++|+..+.++++.++.||.++.. +.. .........|.++|.+++..+
T Consensus 19 ~~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e~-----~~G~P~~~~Gre~l~~~~~~~ 75 (163)
T 3ff0_A 19 RKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTT-----DTGSPIVIRGKDKLAEHAVWS 75 (163)
T ss_dssp HHHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESSC-----SSSSCEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeEE-----CCCCCcceecHHHHHHHHHHH
Confidence 345778999999999999999999999988 531 122344689999999988754
No 67
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=73.93 E-value=3.7 Score=30.26 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC-CCcccEEEee
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN-FRDCHAKIRQ 80 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~-f~~~k~~I~S 80 (174)
--.+++..|+..++. +.+.+..+|.+++.+.++ +....|.++|.+.+...- ...+.|.+..
T Consensus 15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~--------g~~~~G~~~i~~~~~~~~~~~~~~h~~~~ 77 (170)
T 2chc_A 15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFD--------GWVIRGRPALREYADAHARVVRGRHLTTD 77 (170)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEET--------TEEEESHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeC--------CCCcCCHHHHHHHHHHhhcccceEEecCC
Confidence 446789999999995 588999999999998652 346789999998876531 0134555543
No 68
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=73.39 E-value=2.3 Score=31.20 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhcc--CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEee
Q psy6110 11 CVGREFVRQYYTLLNQ--APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQ 80 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~--~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~S 80 (174)
.--.+++..|+..++. +.+.+..+|.+++.+..+. .....+.|.++|.+.+... ++..+.|.+..
T Consensus 28 ~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~-----~g~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~ 96 (163)
T 3b8l_A 28 LAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSG-----IGLTPQVGHAGIREFFTNVFANMSHHAHYLTN 96 (163)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGG-----GTCCCEEHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecC-----CCCCCccCHHHHHHHHHHhhccCCceEEEecC
Confidence 3556899999999997 6889999999999986531 1112578999999888653 23344555543
No 69
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=72.08 E-value=11 Score=27.82 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhccCc--hhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 14 REFVRQYYTLLNQAP--AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 14 ~~FV~qYYt~L~~~p--~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
++-|++||..+++.. +.|..||.++..+.-... ...+ ...|.++|.+++..+
T Consensus 23 kevv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~---~~~~-~~~G~eai~~~~~~~ 76 (136)
T 3hk4_A 23 AEIAKDFTELLKQGDNAGAAEKYNADDIASYEAME---GPMA-VSHGKEALRQKSQWW 76 (136)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSC---STTS-EEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCC---CCcc-ccCCHHHHHHHHHHH
Confidence 345667777777654 468999999988753210 0122 578999999988754
No 70
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=71.45 E-value=5.3 Score=29.58 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHH-hhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeecccc
Q psy6110 10 QCVGREFVRQYYT-LLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVTQ 85 (174)
Q Consensus 10 ~~VG~~FV~qYYt-~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQp 85 (174)
.+--++.|+.||. .++ .+.+.|..||.++-.. |. .....|.+++.+.+..+. |.+.+++|..+=+.
T Consensus 26 ~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~-h~--------P~~~~G~e~~~~~~~~~~~~~pd~~~~i~~iiae- 95 (148)
T 3g0k_A 26 EQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQ-HS--------SLAEPSVEALKGFLDRVRAESPDARQTIHRSFVD- 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEE-CC--------SSSCSSHHHHHHHHHHHHHHCCSCEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEE-cC--------CCCCCCHHHHHHHHHHHHHhCCCceEEEEEEEEE-
Confidence 3466789999999 776 5689999999987432 31 123489999988776542 34566766654333
Q ss_pred CCCcEEEEEeeec
Q psy6110 86 QFPTVKQVEESLP 98 (174)
Q Consensus 86 S~GILI~VtG~ls 98 (174)
|=.|++-+.+.
T Consensus 96 --GD~V~~~~~~~ 106 (148)
T 3g0k_A 96 --GDHVITHTHVE 106 (148)
T ss_dssp --TTEEEEEEEEE
T ss_pred --CCEEEEEEEEE
Confidence 43444444443
No 71
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=70.53 E-value=19 Score=25.38 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC-C--CCcccEEEeeeccccC
Q psy6110 13 GREFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-N--FRDCHAKIRQVPVTQQ 86 (174)
Q Consensus 13 G~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~--f~~~k~~I~SiDaQpS 86 (174)
-.++.++||..++ .+.+.+..+|.++..+...+ ..|....|.++|.+.+..+ . ....++++.....+..
T Consensus 15 I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~-----~~g~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~ 87 (143)
T 2ux0_A 15 IIKITEQLIEAINNGDFEAYTKICDPGLTSFEPE-----ALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVI 87 (143)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGG-----GTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEecc-----CCCcEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEe
Confidence 3466778887777 57999999999988776421 1346788999999988765 2 1234555555444443
No 72
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=69.88 E-value=4.7 Score=33.26 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
-.++.|+.||..+++ +.+.|..+|.++..+... .......|.++|.+.+..+
T Consensus 7 ~~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P------~~~~~~~Gr~ai~~~~~~~ 59 (283)
T 3rga_A 7 VRKEVALEYCRRVNAGELEGVLQLFAPDARLVDP------LGTEPVVGRAALAARLAPA 59 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECS------SSSCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECC------CCCCCcCcHHHHHHHHHHH
Confidence 467789999999984 699999999999998531 2234689999999998754
No 73
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=66.02 E-value=21 Score=25.69 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 7 PSPQCVGREFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 7 ps~~~VG~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
+...++.++.++.||..+. .+.+.|..++.++..+...+- .+. ....|.++|.+.+..+
T Consensus 8 ~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~---~~~-g~~~G~~~v~~~~~~~ 67 (134)
T 3dmc_A 8 DNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG---EFH-GLNVGKERAKEFFTYV 67 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG---GGB-EEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCC---CCC-ccchhHHHHHHHHHHH
Confidence 4456789999999999987 468999999999988765321 111 2588999998877654
No 74
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=65.62 E-value=4.7 Score=30.40 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHH-HhC--CCCcccEEEee
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHI-QQL--NFRDCHAKIRQ 80 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki-~sL--~f~~~k~~I~S 80 (174)
--++|+..|...+|. +.+.+..+|.+++.+..++ . ..+.|.++|.+.+ ... ++..+.|.|..
T Consensus 32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~------~-g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n 97 (176)
T 3a76_A 32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEG------I-GTYKGPEGALDLANNVLWPMFHECIHYGTN 97 (176)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT------T-EEEEHHHHHHHHHHHTHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCC------C-ccccCHHHHHHHHHHhhhcccCceEEecCC
Confidence 456899999999996 5789999999999986532 1 2578999999988 542 34456666654
No 75
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=64.91 E-value=7.8 Score=27.69 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
--.+++..|...++. +.+.+..+|.+++.+.+++ +....|.++|.+.+..+
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~-------g~~~~G~~~i~~~~~~~ 71 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVG-------FATAKGRAAIAALIDGQ 71 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETT-------SCCEESHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCC-------CccccCHHHHHHHHHhc
Confidence 446789999999995 6889999999999987631 22238999999988755
No 76
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=64.86 E-value=3.7 Score=30.26 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 15 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 15 ~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
+.|+.||..+++ +.+.|..+|.++..... ..+....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~-------~~~~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHV-------NEGNIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEE-------ETTEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeC-------CCCcceeCHHHHHHHHHHH
Confidence 468899999984 68999999999988321 1345689999999988854
No 77
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=64.75 E-value=14 Score=25.37 Aligned_cols=74 Identities=5% Similarity=-0.031 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeeccccCCCcEE
Q psy6110 15 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVTQQFPTVK 91 (174)
Q Consensus 15 ~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQpS~GILI 91 (174)
+.|++||..|++ +.+.+..+..++-. |-. -.+....|.+++.+.+..+. +....++|..+=++ |=.|
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~--w~~-----~g~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~~---Gd~V 73 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIE--WNI-----IGNQVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQN---ENQI 73 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEE--EEE-----TTTEEEESHHHHHHHHHHHHHHHHTSEEEEEEEEEC---SSEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceE--EEE-----cCCccEecHHHHHHHHHHHHhhcCCcEEEEEEEEEe---CCEE
Confidence 569999999996 57889999998744 421 11235789999998887653 22346666654333 4345
Q ss_pred EEEeeec
Q psy6110 92 QVEESLP 98 (174)
Q Consensus 92 ~VtG~ls 98 (174)
.|.|.+.
T Consensus 74 vv~~~~~ 80 (112)
T 3f14_A 74 VIEGKCR 80 (112)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5555543
No 78
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=61.49 E-value=5.5 Score=29.08 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEee
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQ 80 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~S 80 (174)
=++++..|...+|. +.+.+..+|.++..+.++. +....|.++|.+.+..+ +|..+.|.|..
T Consensus 13 I~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~-------~~~~~G~~~i~~~~~~~~~~~~~~~H~~~n 76 (150)
T 3ef8_A 13 IERMMFDYSYHLDMNHPEELAALFVEDCEVSYAP-------NFGATGRDAYKKTLEGIGTFFRGTSHHNSN 76 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEET-------TEEEESHHHHHHHTTTHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCHHHHHhhccCceEEEccC-------CCCCCCHHHHHHHHHHhhcccCceEEecCC
Confidence 35688899999996 5899999999999986532 22478999999987654 23445666654
No 79
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=61.28 E-value=8.5 Score=27.82 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CC-cccEEEeee
Q psy6110 11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FR-DCHAKIRQV 81 (174)
Q Consensus 11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~-~~k~~I~Si 81 (174)
+-.++.|++||..+++ +.+.|..+|.++..+.-.+. ..-+....|.++|.+.+..+. +. +.+++|..+
T Consensus 29 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~---~~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (156)
T 1tuh_A 29 EQNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGR---SRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSS---STTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCC---CCccceEcCHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 3457789999998885 68999999999977654221 001224789999988877542 11 344555543
No 80
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=60.21 E-value=2.9 Score=29.26 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHH-HHHhCC--CCcccEEEeee
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE-HIQQLN--FRDCHAKIRQV 81 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~e-ki~sL~--f~~~k~~I~Si 81 (174)
++-|+.||..+++ +.+.|..+|.++..+.-.+. . --+....|.++|.+ .+..+. |.+.++++..+
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~--~-p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEG--F-PYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMY 75 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTT--S-TTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCC--c-ccCcEEeCHHHHHHHHHHHHHhhccccccchhhe
Confidence 4668888888775 57899999999887643210 0 01235789999975 455432 33555666544
No 81
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=56.97 E-value=11 Score=27.28 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL 69 (174)
-++.|+.||..+++ +.+.|..+|.++..+...+.. . -.....|.++|.+.+..+
T Consensus 22 n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~--~-~~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 22 TIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNH--Q-FSGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSS--T-TCEEEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCC--C-CCceEcCHHHHHHHHHHH
Confidence 46678888888875 689999999998886543210 0 112468999999877654
No 82
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=53.11 E-value=26 Score=24.98 Aligned_cols=113 Identities=9% Similarity=0.020 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC---CCCcccEEEeeecccc
Q psy6110 10 QCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL---NFRDCHAKIRQVPVTQ 85 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL---~f~~~k~~I~SiDaQp 85 (174)
..--++|+..|...+|. +.+.+..+|.++..+... .| ...|.++|.+.+... ....+.|.|..+-...
T Consensus 9 ~~~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~-------~g-~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~ 80 (144)
T 2rgq_A 9 KLEIMELAARFEMSLDKEDVENYLATFASDGALQGF-------WG-IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQG 80 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEET-------TE-EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcC-------CC-CCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEE
Confidence 34567899999999996 578999999999987542 12 348999998887632 1123567666543322
Q ss_pred CCCcEEEEEeeecCCCCCCCCCC---CCCCCCCCCccccccccccceec
Q psy6110 86 QFPTVKQVEESLPPVTQPPSPPA---DPTPPSPPKEDEWKWNEQTPVEA 131 (174)
Q Consensus 86 S~GILI~VtG~ls~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 131 (174)
... ...+.+.+..-........ --.++..-.+|+||..+-+.++-
T Consensus 81 ~~d-~a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~dg~Wri~~r~~~~d 128 (144)
T 2rgq_A 81 NYD-EATMESYLTVVNREDLNRAGSAFVKDQVRKINGKWYLILRQIEVD 128 (144)
T ss_dssp CSS-EEEEEEEEEEEESSSSCEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eCC-EEEEEEEEEEEEecCCeEEEEEEEEEEEEEECCEEEEEEEEEEec
Confidence 111 1112222111000000000 00123445678899888777554
No 83
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=52.48 E-value=26 Score=24.54 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN 70 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~ 70 (174)
.++-|+.||..+++ +.+.|..++.++..+.. .+....|.+++.+.+..+.
T Consensus 8 ~~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~--------~~g~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 8 TRDLVLEFIHALNTENFPAAKKRLNENFTFNG--------PMGHREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEEE--------TTEEEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEC--------CCCcccCHHHHHHHHHHHH
Confidence 34667778888885 68999999999876542 3346889999999888764
No 84
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=43.57 E-value=31 Score=26.29 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhhcc-CchhHhhccccCCceeec-CCCCCCcCccccccHHHHHHHHHhCC-----CCcccEEEeee
Q psy6110 10 QCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHG-GLDAPNRETKQVVGQEQIHEHIQQLN-----FRDCHAKIRQV 81 (174)
Q Consensus 10 ~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~g-g~d~~t~eg~~~~G~e~I~eki~sL~-----f~~~k~~I~Si 81 (174)
.+--++++..|...+|. +.+.+..+|.++..+... ...+.......+.|.++|.+.+...- |..+.|.+...
T Consensus 25 ~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~ 103 (179)
T 3ejv_A 25 ETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAP 103 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCC
Confidence 34457788899999985 589999999999987542 10000001136789999999987542 44456666543
No 85
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=41.35 E-value=59 Score=28.63 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=49.8
Q ss_pred HHHHHHHHH---------HHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC---C-------
Q psy6110 11 CVGREFVRQ---------YYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN---F------- 71 (174)
Q Consensus 11 ~VG~~FV~q---------YYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~---f------- 71 (174)
--|++|++. |-..+-.+++.|.+||.+.+.|.. -.....|...+..|. |
T Consensus 176 GrgRAWiRlaLne~~L~~yL~~ll~~~~~l~~~Y~~~A~L~~------------~Ee~~~il~~L~gLn~vDf~~f~~~~ 243 (384)
T 3cwz_B 176 GKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRC------------DDEKEQFLYHLLSFNAVDYFCFTNVF 243 (384)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTCHHHHHHHBCTTSTTTC------------HHHHHHHHHHHGGGGSSCCCTTTTTC
T ss_pred cchhHHHHHHHhcchHHHHHHHHHhCchhhhhhcccchhhcC------------cchhhhhhhhcccccccchhhccccc
Confidence 367888774 999999999999999999998742 233456666665443 1
Q ss_pred --Ccc--cEEEeeecccc-CC---CcEEEEEeee
Q psy6110 72 --RDC--HAKIRQVPVTQ-QF---PTVKQVEESL 97 (174)
Q Consensus 72 --~~~--k~~I~SiDaQp-S~---GILI~VtG~l 97 (174)
..+ ++.|.+=|.-. .. .|.|.+.|.-
T Consensus 244 Ttt~~~Y~V~V~TG~~~gaAGT~anV~I~L~G~~ 277 (384)
T 3cwz_B 244 TTILIPYHILIVPSKKLGGSMFTANPWICISGEL 277 (384)
T ss_dssp TTSEEEEEEEEEECCCCCSCCCCSCEEEEEEESS
T ss_pred cccceeEEEEEEeCCCCCCCCCCCcEEEEEEeCC
Confidence 113 34455545432 22 6899998875
No 86
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=38.10 E-value=35 Score=24.44 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcc--CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccC-C
Q psy6110 13 GREFVRQYYTLLNQ--APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQ-F 87 (174)
Q Consensus 13 G~~FV~qYYt~L~~--~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS-~ 87 (174)
...|++.++.-... +-+.|-..|.++..|+.. .....|.+++.+.+... .|.+.+++|..+-.... .
T Consensus 12 ~~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p--------~G~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~ 83 (128)
T 1tp6_A 12 AHVAIRDWLAGDSRADALDALMARFAEDFSMVTP--------HGVVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGV 83 (128)
T ss_dssp HHHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECT--------TSCEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEET
T ss_pred HHHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECC--------CCeECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecC
Confidence 45566666665444 567888999999999752 23588999999998754 24466777766665333 2
Q ss_pred -CcEEEEE
Q psy6110 88 -PTVKQVE 94 (174)
Q Consensus 88 -GILI~Vt 94 (174)
+++|.-.
T Consensus 84 d~~vv~y~ 91 (128)
T 1tp6_A 84 DGATLAYR 91 (128)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 4555544
No 87
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=37.24 E-value=99 Score=23.72 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhc-cCchhHhhccccCC-----------------ceeecCCCCCCcCccccccHHHHHHHHHhC--CCCc
Q psy6110 14 REFVRQYYTLLN-QAPAHLHRFYSENS-----------------LFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRD 73 (174)
Q Consensus 14 ~~FV~qYYt~L~-~~p~~L~rFY~~~S-----------------~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~ 73 (174)
.+-...||..|+ .+.+.|..+|.++. .++|. .+....|.++|.+.+..+ .+..
T Consensus 15 ~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~P-------g~~~l~G~~~I~~~~~~~f~~~~~ 87 (170)
T 3cnx_A 15 GLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHP-------GWPVLSGRGEVLRSYALIMANTEY 87 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECT-------TCCEEEHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcC-------CCccccCHHHHHHHHHHHHccCCe
Confidence 355777888887 47999999999884 34453 234689999999877543 1112
Q ss_pred ccEEEeeeccccCC-CcEEEEEeeecCCCC-----CCCCCC-----CCCCCCCCCccccccccccc
Q psy6110 74 CHAKIRQVPVTQQF-PTVKQVEESLPPVTQ-----PPSPPA-----DPTPPSPPKEDEWKWNEQTP 128 (174)
Q Consensus 74 ~k~~I~SiDaQpS~-GILI~VtG~ls~~~~-----p~~~~~-----~~~~~~~~~~~~~~~~~~~~ 128 (174)
.++++..+....+. ..++.+...+...+. ....|. -.+++.+=.+++||.-..-.
T Consensus 88 ~~~~~~dv~v~~~gD~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~ggWriv~hH~ 153 (170)
T 3cnx_A 88 IQFFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHA 153 (170)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEEEEE
T ss_pred eEEEEEEEEEEEeCCEEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECCEEEEEEEec
Confidence 34444444433332 244444444543211 000121 14555556778999765433
No 88
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=35.86 E-value=73 Score=22.64 Aligned_cols=68 Identities=6% Similarity=0.063 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCcc--ccccHHHHHHHHHh-CCCCcccEEEeeeccccC
Q psy6110 13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETK--QVVGQEQIHEHIQQ-LNFRDCHAKIRQVPVTQQ 86 (174)
Q Consensus 13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~--~~~G~e~I~eki~s-L~f~~~k~~I~SiDaQpS 86 (174)
-++-++.|+.-+++ +.+.|.+.|++++.+.... +|. .....++..+.+.+ -+....+++|.+||....
T Consensus 14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~------~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~gd 85 (125)
T 3duk_A 14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV------GDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIVGT 85 (125)
T ss_dssp HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE------TTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc------CCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEECC
Confidence 34558899988885 6999999999999986421 222 11234555555543 444467889998888753
No 89
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=34.10 E-value=50 Score=25.22 Aligned_cols=49 Identities=10% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110 14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68 (174)
Q Consensus 14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s 68 (174)
..+++.|+..+++ +.+.|..+|.++..+.= .....++.|.+.|.+.+..
T Consensus 21 ~~~v~~f~~A~~~gD~~aL~~LlA~Dvv~~s------P~~~~p~~Gr~av~~~l~~ 70 (155)
T 3flj_A 21 HPTIARMQEVVAKGDESLIHALLAEDVRFMP------PTYYKTWTGRDPVAAVLGH 70 (155)
T ss_dssp CHHHHHHHHHHTTTCHHHHHTTEEEEEEEEC------SSSSCCEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHhcCCCEEEEC------CCCCCCcCCHHHHHHHHHH
Confidence 3578999999885 68999999999998752 1234578999999988864
No 90
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=30.69 E-value=1.2e+02 Score=20.05 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=40.2
Q ss_pred HHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccC
Q psy6110 15 EFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ 86 (174)
Q Consensus 15 ~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS 86 (174)
+..++|+.-+. .+.+.|.+++.++-.+++. .| ...|.+++.+.+.+-.......++..+..+..
T Consensus 10 ~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~-------~G-~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~ 74 (123)
T 2r4i_A 10 DCEKKLLTAIQNNDVESLEVLLHDDLLFIIP-------SG-ETVTKETDIAAYSSGKIALRAVVPSDYIIRII 74 (123)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECT-------TS-CEECHHHHHHHHHTTCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCcCeEEECC-------CC-CCccHHHHHHHHhcCCeEEEEEeecccEEEEE
Confidence 44566776554 6899999999998776652 23 45678887777765432222344555555443
No 91
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=28.88 E-value=22 Score=28.03 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHH---HHhCCCC
Q psy6110 18 RQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEH---IQQLNFR 72 (174)
Q Consensus 18 ~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~ek---i~sL~f~ 72 (174)
..|...+-.+++-|.+||.+.|.|.- -.+....+.+.|... |..++|+
T Consensus 134 ~~~l~~l~~~~~~l~~~Y~~~a~lr~-------s~~~~~~l~~~l~~~L~~L~~l~F~ 184 (198)
T 4giw_A 134 ELWFSSLQEDAGLLSLMYMPTGFFSL-------ARGGCPSLSTELLLLLQPLSVLTFH 184 (198)
T ss_dssp HHHHHHHHTCHHHHHHHBCTTSHHHH-------TSSBTTBHHHHHHHHHGGGGGSCCB
T ss_pred HHHHHHHHhChHHHHHHcCCchHhhc-------ccccChHHHHhhhccccccccccee
Confidence 45889999999999999999998741 111123455665554 5567775
No 92
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=24.79 E-value=12 Score=27.76 Aligned_cols=106 Identities=8% Similarity=0.029 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC---Cc
Q psy6110 14 REFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF---PT 89 (174)
Q Consensus 14 ~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~---GI 89 (174)
...+++|...++ .+.+.+.++|.++-.+.=. -..++.+.|.+.+...+...+......++.....+... .|
T Consensus 15 ~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~-----~~~g~~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~Av 89 (143)
T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSMTCFEP-----EALGNLIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAAC 89 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECG-----GGTTCCEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCCEEEEcc-----CcCCccccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCEEE
Confidence 467888887776 5799999999987665310 01355688988877443321111234444444333322 11
Q ss_pred E--EEEEeeecCCCCCCCCCCCCCCCCCCCccccccc
Q psy6110 90 V--KQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWN 124 (174)
Q Consensus 90 L--I~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~ 124 (174)
+ +..++....+|.+.....--+.+..=.+|+||+-
T Consensus 90 ~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~Wkiv 126 (143)
T 2f86_B 90 VAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCV 126 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEEeeeeeccCCCCeeeEEEEEEEEEEEeCCcEEEE
Confidence 1 2233444334554444445555566566788864
No 93
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=24.02 E-value=33 Score=25.97 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=34.7
Q ss_pred HHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHH
Q psy6110 16 FVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67 (174)
Q Consensus 16 FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~ 67 (174)
-|+.-.+.|. .+-+.|...|.+++.|++++ -.....|.++|...|.
T Consensus 7 iVqrlW~al~AgD~D~l~adyaeDaV~i~P~------sa~vl~GR~~~r~a~~ 53 (120)
T 3lyg_A 7 IVQRGWEALGAGDFDTLVTDYVEKMIFIMPG------QADVLKGRQAFRSALD 53 (120)
T ss_dssp HHHHHHHHHHHTCHHHHGGGEEEEEEEECSS------TTCEEESHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHhcccCeEEEccC------ccceeecHHHHHHHHH
Confidence 3555566666 35789999999999999853 3457899999999444
No 94
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=20.18 E-value=2.2e+02 Score=19.63 Aligned_cols=78 Identities=6% Similarity=-0.035 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCCCcEEE
Q psy6110 14 REFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQ 92 (174)
Q Consensus 14 ~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~GILI~ 92 (174)
.+..++|+.-+. .+.+.|.+++.++-.++|+ .|.. .+.++..+.+.+-...-...++.....+....=..+
T Consensus 17 ~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~-------~G~~-~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d~Av 88 (134)
T 3fsd_A 17 AFYEERLRAAMLTGDLKGLETLLADDLAFVDH-------TGCV-KTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDGRV 88 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECT-------TSCE-ECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTTEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhcCCCEEEECC-------CCcC-ccHHHHHHHHHcCCceEEEEEEeccEEEEeCCCEEE
Confidence 344566676554 6899999999999888763 2333 345555555554221112333444444333211344
Q ss_pred EEeeecC
Q psy6110 93 VEESLPP 99 (174)
Q Consensus 93 VtG~ls~ 99 (174)
|+|.+..
T Consensus 89 v~~~~~~ 95 (134)
T 3fsd_A 89 VVVRAVT 95 (134)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4555544
Done!