RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6110
(174 letters)
>gnl|CDD|238403 cd00780, NTF2, Nuclear transport factor 2 (NTF2) domain plays an
important role in the trafficking of macromolecules,
ions and small molecules between the cytoplasm and
nucleus. This bi-directional transport of
macromolecules across the nuclear envelope requires
many soluble factors that includes GDP-binding protein
Ran (RanGDP). RanGDP is required for both import and
export of proteins and poly(A) RNA. RanGDP also has
been implicated in cell cycle control, specifically in
mitotic spindle assembly. In interphase cells, RanGDP
is predominately nuclear and thought to be GTP bound,
but it is also present in the cytoplasm, probably in
the GDP-bound state. NTF2 mediates the nuclear import
of RanGDP. NTF2 binds to both RanGDP and FxFG
repeat-containing nucleoporins.
Length = 119
Score = 85.0 bits (211), Expect = 6e-22
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67
S + V + FV+QYY++ + LHR Y + S+ G KQV G++ I E +
Sbjct: 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREG-------MKQVTGRDAIVEKLS 53
Query: 68 QLNFRDCHAKIRQV 81
L F+ KI V
Sbjct: 54 SLPFQKTKHKITTV 67
>gnl|CDD|216894 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain. This
family includes the NTF2-like Delta-5-3-ketosteroid
isomerase proteins.
Length = 116
Score = 64.7 bits (158), Expect = 5e-14
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 12 VGREFVRQYYTLLNQ-APAHLHRFYS-ENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
V FV++YY L+ P L Y + S+ G V G+E I+E L
Sbjct: 1 VALAFVQRYYAALDAGDPEGLAALYYDDASVEDPPGQS-------PVTGREAINEFFDSL 53
Query: 70 NFRDCHAKIRQV 81
F I V
Sbjct: 54 PFTRIQHLITSV 65
>gnl|CDD|238296 cd00531, NTF2_like, Nuclear transport factor 2 (NTF2-like)
superfamily. This family includes members of the NTF2
family, Delta-5-3-ketosteroid isomerases, Scytalone
Dehydratases, and the beta subunit of Ring
hydroxylating dioxygenases. This family is a classic
example of divergent evolution wherein the proteins
have many common structural details but diverge greatly
in their function. For example, nuclear transport
factor 2 (NTF2) mediates the nuclear import of RanGDP
and binds to both RanGDP and FxFG repeat-containing
nucleoporins while Ketosteroid isomerases catalyze the
isomerization of delta-5-3-ketosteroid to
delta-4-3-ketosteroid, by intramolecular transfer of
the C4-beta proton to the C6-beta position. While the
function of the beta sub-unit of the Ring hydroxylating
dioxygenases is not known, Scytalone Dehydratases
catalyzes two reactions in the biosynthetic pathway
that produces fungal melanin. Members of the NTF2-like
superfamily are widely distributed among bacteria,
archaea and eukaryotes.
Length = 124
Score = 54.4 bits (131), Expect = 5e-10
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 13 GREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
+F+ +Y LL+ L Y++++ F G + G+E I + +++L F
Sbjct: 1 AEQFLYRYARLLDAGDREWLALLYADDAYFEPPG---GDGLIYPDDGREAIEDRVRRLPF 57
Query: 72 ---RDCH 75
R H
Sbjct: 58 GPSRTRH 64
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 40.5 bits (94), Expect = 2e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 90 VKQVEESLPPVTQPPSPPADPTP-PSPPKEDEWKWN-EQTPV-EAPRSPSPPPPPSNEPK 146
+ + E++ VT P P PSPP ED+ K E PV E P++PS PPPP K
Sbjct: 165 ISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAK 224
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 40.6 bits (95), Expect = 2e-04
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
P + V E+ P PP P A P P +P PV+ +PP P
Sbjct: 391 AAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESA-PKLTRAAIPVDEKPKYTPPAP 449
Query: 141 PSNEPK 146
P E K
Sbjct: 450 PKEEEK 455
Score = 38.3 bits (89), Expect = 0.001
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
P V + P T+P + A PP P + P P P P
Sbjct: 367 QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRET-ATPPPVPPRPVAPPVPHTP 425
Query: 141 PSNEPKT 147
S T
Sbjct: 426 ESAPKLT 432
Score = 32.1 bits (73), Expect = 0.14
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 93 VEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
+E L PV P PA PT +P P A + PP P E T
Sbjct: 356 IEALLVPV--PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT 408
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 40.3 bits (94), Expect = 3e-04
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 88 PTVKQVEESL---PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNE 144
P V + ES P + P P P PP P + Q P P P PP P+ +
Sbjct: 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD 2948
Query: 145 P 145
P
Sbjct: 2949 P 2949
Score = 34.5 bits (79), Expect = 0.021
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANL 151
V S PP P P P P Q + P P P PPP P+ L
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPP------PQPQPQPPPPPQPQPPPPPPPRPQPPL 2943
Score = 34.5 bits (79), Expect = 0.024
Identities = 27/102 (26%), Positives = 32/102 (31%), Gaps = 14/102 (13%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTP------------- 128
P P + P PP PP P PP P D E +
Sbjct: 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970
Query: 129 -VEAPRSPSPPPPPSNEPKTYANLLKGSHSHSTTSSYQKPLS 169
V PR P P PS E + HS S SS+ L+
Sbjct: 2971 RVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012
Score = 33.8 bits (77), Expect = 0.041
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
V T P ++ P + P+PPA P P+ P T P +P+PP
Sbjct: 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT-AGPPAPAPPAA 2774
Query: 141 PSNEPKTYANLLKGSHSHSTTSSYQKPLSPLD 172
P+ P + + S P P D
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
Score = 31.1 bits (70), Expect = 0.34
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSP-PADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPP 139
P P + P PPSP P D P PP + P + PP
Sbjct: 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPE 2650
Query: 140 PPSNEP 145
P ++P
Sbjct: 2651 RPRDDP 2656
Score = 30.3 bits (68), Expect = 0.62
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 78 IRQVPVTQQFPTVKQVEESLPPVTQPPSP-----------PADPTPPSPPKEDEWKWNEQ 126
+R+ P ++ K + PPV + P P D P + Q
Sbjct: 2862 VRRRPPSRSPAA-KPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
Query: 127 TPVEAPRSPSPPPPPSNEP 145
P P PPPPP P
Sbjct: 2921 PQPPPPPQPQPPPPPPPRP 2939
Score = 29.1 bits (65), Expect = 1.4
Identities = 17/82 (20%), Positives = 21/82 (25%), Gaps = 3/82 (3%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P + Q + P P+P P P S P E P PPP
Sbjct: 394 PFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA---TPLPSAEPGSDDGPAPPP 450
Query: 142 SNEPKTYANLLKGSHSHSTTSS 163
+P A T
Sbjct: 451 ERQPPAPATEPAPDDPDDATRK 472
Score = 28.8 bits (64), Expect = 1.9
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
PP P P + P Q P +P+PP P+
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746
Score = 28.0 bits (62), Expect = 3.2
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS---PSPPPPPSNE 144
P V + ES + P P P P P + P+ PPPP
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 145 PKTYANL 151
P L
Sbjct: 2846 PPPSLPL 2852
Score = 28.0 bits (62), Expect = 3.4
Identities = 12/47 (25%), Positives = 15/47 (31%)
Query: 96 SLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
PP PP A PP P + + P P P P+
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657
Score = 28.0 bits (62), Expect = 3.8
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSP---PKEDEWKWNEQTPVEAPRSPSP 137
VP + P + + P P+PP + PP+P P D+ + ++A R P
Sbjct: 423 VPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRP 482
Query: 138 PPPPSNEP 145
P PP +
Sbjct: 483 PEPPGADL 490
Score = 27.2 bits (60), Expect = 5.4
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 101 TQPPSPPADPTPPSPP-KEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P PP + P+ + W P+PP PP P
Sbjct: 275 ATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAG 322
Score = 27.2 bits (60), Expect = 6.1
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 98 PPVTQPPSPPADPTPP------SPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPK 146
PP P + PA P P P + P + R P P PP +P+
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
Score = 27.2 bits (60), Expect = 6.9
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 85 QQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNE 144
++ P + P PP P P PP PP+ P +P+ P + E
Sbjct: 2906 ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-----------PPLAPTTDPAGAGE 2954
Query: 145 P 145
P
Sbjct: 2955 P 2955
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 37.1 bits (86), Expect = 0.003
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLL 152
P + P+ P P PPKE+E + + P++ P PPS+ + +A+ L
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVE--KPASSPEPKASKPSAPPSSGDRIFASPL 254
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 36.4 bits (85), Expect = 0.005
Identities = 14/67 (20%), Positives = 22/67 (32%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
+ P P+PPA P +PPK P P + + P + +
Sbjct: 56 SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
Query: 148 YANLLKG 154
L+G
Sbjct: 116 EVTPLRG 122
Score = 29.5 bits (67), Expect = 1.1
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 3/60 (5%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
+ P P + P+PP P A + + P +
Sbjct: 47 AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA---APPKPAAAAAAAAAPAAPPAAA 103
Score = 28.3 bits (64), Expect = 2.5
Identities = 6/48 (12%), Positives = 8/48 (16%)
Query: 100 VTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
+P A + AP P P
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK 85
Score = 28.3 bits (64), Expect = 2.7
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 102 QPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P S A + +AP +P+P PP + P
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA 82
Score = 28.3 bits (64), Expect = 2.8
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPK 146
+ P + A + P+ + A +P+ PP P+
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA 91
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 36.3 bits (84), Expect = 0.006
Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
P P P P A P P + P AP P+ PP+
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPA---RPAAARPAPAPAPPAAAAPPA 435
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 35.3 bits (81), Expect = 0.010
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPK 146
E+ P PPSP A P PP P K P +P+ P + +PK
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAK-------TAAPATKAAAPAAAAPRAEKPK 57
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 35.6 bits (82), Expect = 0.010
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 79 RQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPP 138
R + ++ +++ + P P DP P PP + EAP +P
Sbjct: 366 RLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEP-----ARSAEAPPLVAPA 420
Query: 139 PPPSNEPKTYANLLK 153
P+ + ++L
Sbjct: 421 AAPAGLALRWRDVLA 435
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 35.0 bits (81), Expect = 0.010
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPP------ADPTPPSPPKEDEWKWNEQTPVEAPRSP 135
+ S P V PSPP +D + P P E+P +P
Sbjct: 176 DADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSF-QSDTPPPSPESPTNP 234
Query: 136 SPPPPPSNEPKTYANL-LKGSHSHSTTSSYQKPLSP 170
SPPP P+ P S + T S +P
Sbjct: 235 SPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAP 270
Score = 32.3 bits (74), Expect = 0.096
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 80 QVPVTQQFPTVKQVEESLPPVTQPPSPPADPT--PPSPPKEDEWKWNEQTPVEAPRSPSP 137
P FP+ + S + PP+P + + PP P+ +P P +P P
Sbjct: 190 SSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESP----TNPSPPPGPAAPPP 245
Query: 138 PPPPSNEPKTYANLLKGSHSHSTTSSYQKPLSPLDIS 174
PP P + A S S + L I+
Sbjct: 246 PPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIA 282
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 34.2 bits (79), Expect = 0.018
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P + P P P P PK Q VEAP +P P P P E K
Sbjct: 87 PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKP---KPQQKVEAPPAPKPEPKPVVEEKA 143
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 34.3 bits (79), Expect = 0.023
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 93 VEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSN 143
+ + P T P+P T + K T A + +P PPP+
Sbjct: 266 ADAAAQPATAAPAPS-RMTDTNDSKS-------VTSQPAAAAAAPAPPPNP 308
Score = 29.7 bits (67), Expect = 0.74
Identities = 18/102 (17%), Positives = 24/102 (23%), Gaps = 14/102 (13%)
Query: 51 RETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFP----TVKQVEESLPPVTQP-PS 105
+ V +I E + L F +T V+ QP +
Sbjct: 225 KHAPLVAPHARIAEQARALGFDR---------ITLTGAGDERIVRAFLTWADAAAQPATA 275
Query: 106 PPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
PA AP P PP EP
Sbjct: 276 APAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPA 317
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 34.3 bits (78), Expect = 0.027
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 111 TPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
TPPSPP D + TP P +P P P P+ +P
Sbjct: 919 TPPSPPDPDPTPDPDPTPDPDP-TPDPEPTPAYQP 952
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 33.8 bits (78), Expect = 0.031
Identities = 17/70 (24%), Positives = 23/70 (32%)
Query: 77 KIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPS 136
+ P Q+ P LP T PP P PP + Q P ++ P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Query: 137 PPPPPSNEPK 146
P P+ P
Sbjct: 580 IPEEPTPSPT 589
Score = 33.8 bits (78), Expect = 0.034
Identities = 13/68 (19%), Positives = 21/68 (30%)
Query: 76 AKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSP 135
A P P ++ S P Q + P+ P + P + P +
Sbjct: 373 APANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANA 432
Query: 136 SPPPPPSN 143
+ PP N
Sbjct: 433 ANAPPSLN 440
Score = 33.4 bits (77), Expect = 0.043
Identities = 16/64 (25%), Positives = 21/64 (32%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
S PP PS P + P K + PV A + P PP+N
Sbjct: 376 NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANA 435
Query: 148 YANL 151
+L
Sbjct: 436 PPSL 439
Score = 31.9 bits (73), Expect = 0.14
Identities = 13/63 (20%), Positives = 18/63 (28%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P Q P T P P PP P + + + P+ PP P+
Sbjct: 524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEE 583
Query: 148 YAN 150
Sbjct: 584 PTP 586
Score = 30.3 bits (69), Expect = 0.57
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 103 PPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSHSTTS 162
+ P SPP Q AP PPPPP+ + + + +S
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASS---NAPAQIPADSS 575
Query: 163 SYQKPLSP 170
Sbjct: 576 PPPPIPEE 583
Score = 29.9 bits (68), Expect = 0.73
Identities = 16/60 (26%), Positives = 18/60 (30%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
+ P PSPP P PS PK + P P P P EP
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSP 426
Score = 28.0 bits (63), Expect = 2.9
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 8/81 (9%)
Query: 80 QVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPP 139
P PP P + A P+ D + P+ +PSP
Sbjct: 534 PAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS---SPPPPIPEEPTPSPTK 590
Query: 140 PPSNEP-----KTYANLLKGS 155
S E K A+ G
Sbjct: 591 DSSPEEIDKAAKNLADFFNGE 611
Score = 27.6 bits (62), Expect = 3.5
Identities = 7/66 (10%), Positives = 13/66 (19%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
+ P P P+ P + +P + P P
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSP 426
Query: 142 SNEPKT 147
+
Sbjct: 427 TPPANA 432
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 33.5 bits (77), Expect = 0.046
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPT---PPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNE 144
+V+ P P + PSPP + + +TP A S SPP
Sbjct: 291 SSVEANGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAFERP 350
Query: 145 PKT 147
Sbjct: 351 LAL 353
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 33.6 bits (77), Expect = 0.048
Identities = 10/48 (20%), Positives = 13/48 (27%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
Q +P A P P + E P P P+ E
Sbjct: 49 KAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQ 96
Score = 30.9 bits (70), Expect = 0.37
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 72 RDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEA 131
R+ + + + +Q + P P A + SP EA
Sbjct: 33 RELRSLVAEGAAGPVAKAAEQ-MAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEA 91
Query: 132 PRS--PSPPPPPSNEPK 146
P + PS P PS P
Sbjct: 92 PAAEQPSAVPAPSAAPA 108
Score = 28.3 bits (63), Expect = 2.5
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 94 EESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
+ P P PP+P +E E EQ P P + P P
Sbjct: 68 AAESIASPEVPPPV----PPAPAQEGEAPAAEQ-PSAVPAPSAAPAP 109
Score = 27.9 bits (62), Expect = 3.3
Identities = 8/51 (15%), Positives = 10/51 (19%), Gaps = 2/51 (3%)
Query: 94 EESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNE 144
E P P P + + P PS P
Sbjct: 76 EVPPPVPPAPAQEG--EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 33.1 bits (75), Expect = 0.067
Identities = 16/65 (24%), Positives = 23/65 (35%)
Query: 104 PSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSHSTTSS 163
P+ PA+ P+P + + +P PP P KT A S +
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266
Query: 164 YQKPL 168
Y PL
Sbjct: 267 YVTPL 271
Score = 31.9 bits (72), Expect = 0.18
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 98 PPVTQPPSPPADPTP-PSP-PKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P + P++ P+P P P AP P + P +
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVS 260
Score = 31.5 bits (71), Expect = 0.19
Identities = 10/50 (20%), Positives = 15/50 (30%)
Query: 94 EESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSN 143
EE P ++ S PA P +P+ P S+
Sbjct: 212 EEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSS 261
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 32.4 bits (74), Expect = 0.090
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 79 RQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPP 138
R+V + + P PPV +P +DP P PP + + + T P
Sbjct: 45 RKVLLGELVPLPGTTATQPPPV--VLTPWSDPRLPDPPHLPDPQTHSATA------HRNP 96
Query: 139 PPPSNEPKTYAN 150
PP N P A+
Sbjct: 97 HPPLNSPARIAH 108
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 32.1 bits (73), Expect = 0.11
Identities = 18/74 (24%), Positives = 18/74 (24%), Gaps = 9/74 (12%)
Query: 102 QPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNE--------PKTYANLLK 153
QP P P DE N P S P PP E P Y
Sbjct: 7 QPLGAGG-PRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNG 65
Query: 154 GSHSHSTTSSYQKP 167
H Q P
Sbjct: 66 DRHGGYQPLGQQDP 79
Score = 27.9 bits (62), Expect = 2.8
Identities = 12/71 (16%), Positives = 16/71 (22%), Gaps = 16/71 (22%)
Query: 85 QQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSP------- 137
+P+ P P A P PP + + P
Sbjct: 29 PYYPSSFGSSWDRPGPPVPEDYDAPSHRP-PPYGGSN-GDRHGGYQPLGQQDPSLYAGLG 86
Query: 138 -------PPPP 141
PPPP
Sbjct: 87 QNGGGGLPPPP 97
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 32.3 bits (73), Expect = 0.11
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P PA P + + +Q PV+ + P+P P P+T
Sbjct: 203 PTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQT 252
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 32.1 bits (74), Expect = 0.14
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 80 QVPVTQQFPTVKQVEESLPPVTQP----------PSPPADPTPPSPPKEDEWKWNEQTPV 129
Q+ Q K+ E + +P P +P K++ ++W PV
Sbjct: 428 QLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPV 487
Query: 130 EAPRSPSPPPPP 141
E + P P
Sbjct: 488 EVKKEPVATPKA 499
Score = 29.4 bits (67), Expect = 1.1
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P P P P +P + V P++P+ PPPP++ P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAP 407
Score = 27.9 bits (63), Expect = 3.5
Identities = 10/92 (10%), Positives = 17/92 (18%), Gaps = 3/92 (3%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKED---EWKWNEQTPVEAPRSPSPP 138
Q PP P P + + + P
Sbjct: 385 AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPA 444
Query: 139 PPPSNEPKTYANLLKGSHSHSTTSSYQKPLSP 170
P A S + ++ + P
Sbjct: 445 AASRARPVNSALERLASVRPAPSALEKAPAKK 476
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 31.7 bits (72), Expect = 0.16
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P P+ P + + P+ P + P + P P +P P
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQ 445
Query: 142 SNEPKTYANLLKGSHSH--STTSSYQKPLSP 170
+ P + K S S S +P+
Sbjct: 446 AVRPAQFKEEKKIPVSKVSSLGPSTLRPIQE 476
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 31.6 bits (72), Expect = 0.17
Identities = 14/60 (23%), Positives = 16/60 (26%), Gaps = 12/60 (20%)
Query: 91 KQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYAN 150
K E P PPA P P P P+P P P A+
Sbjct: 139 KTTPEKPKAAAPTPEPPAASKPTPPAAA------------KPPEPAPAAKPPPTPVARAD 186
Score = 31.6 bits (72), Expect = 0.18
Identities = 11/56 (19%), Positives = 14/56 (25%), Gaps = 4/56 (7%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
+ P P P P + TP A + P P P P
Sbjct: 130 AAAAAAKAEKTTPEKPKAAAPTPEPPAAS----KPTPPAAAKPPEPAPAAKPPPTP 181
Score = 29.7 bits (67), Expect = 0.88
Identities = 13/81 (16%), Positives = 19/81 (23%), Gaps = 10/81 (12%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPAD------PTPPSPPKEDEWKWNEQTPVEAPRS 134
V V + PP P + A P P P +
Sbjct: 109 VEVGAPLSEIDTGGA--PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA 166
Query: 135 PSPPPPPSNEPKTYANLLKGS 155
P P P+ K + +
Sbjct: 167 KPPEPAPA--AKPPPTPVARA 185
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 31.8 bits (72), Expect = 0.18
Identities = 13/60 (21%), Positives = 18/60 (30%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
P P P+ A P+P +D W E P A +P+ P
Sbjct: 457 APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA 516
Score = 29.1 bits (65), Expect = 1.2
Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 8/92 (8%)
Query: 76 AKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSP 135
A PV Q P + P PP+ PA + + AP
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAA--------RAVAAAPARR 426
Query: 136 SPPPPPSNEPKTYANLLKGSHSHSTTSSYQKP 167
SP P + + G + P
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAP 458
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 31.5 bits (71), Expect = 0.24
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 96 SLPPVTQPP-------SPPADPTPPSPPKEDEWKWNEQTP 128
SLPP PP PP+ P PP PP + K + +
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQL 42
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 30.9 bits (70), Expect = 0.30
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
P PP PP +P P ++ +QT + P
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEP----DQTDPDDGEETDQIPE 308
Score = 30.9 bits (70), Expect = 0.34
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 97 LPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPP 139
LP P PP P P P+E+ + ++ P + + P
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 26.3 bits (58), Expect = 9.2
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 18/53 (33%)
Query: 93 VEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
VE L P P +P PP PP P PP P EP
Sbjct: 255 VELVLLP-RATRLPEPEPQPPPPP-----------------PPPEPPEPEEEP 289
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 31.2 bits (70), Expect = 0.31
Identities = 18/83 (21%), Positives = 30/83 (36%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P + +P +++ P P DP P P+E + ++ R SP P +
Sbjct: 563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPK 622
Query: 148 YANLLKGSHSHSTTSSYQKPLSP 170
+ S Q+P SP
Sbjct: 623 SPKRPESPKSPKRPPPPQRPSSP 645
Score = 30.4 bits (68), Expect = 0.45
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSP--PADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPP 139
P + + P + + +S P SP P P PS P+ E ++P + P+SP PP
Sbjct: 609 PKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSP-KPPKSPKPPF 667
Query: 140 PPSNEPKTYANLLKGS 155
P + K Y + L +
Sbjct: 668 DPKFKEKFYDDYLDAA 683
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 30.7 bits (70), Expect = 0.35
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
ES P+ A+ +P ++ +P + +P
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAA-AKKAAPAPAAPAAPAAEVAADP 131
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 30.7 bits (69), Expect = 0.37
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 94 EESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPS---PPPPP 141
E P PSP T P D +E + + P++P+ P PPP
Sbjct: 49 ETQSPLTELQPSPLPPNTTLDAPVSDSQG-DESSSEQQPQNPNSTEPAPPP 98
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 30.4 bits (69), Expect = 0.38
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 57 VGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTP---- 112
VG+ ++H H R P Q P + PV QPP P
Sbjct: 63 VGEVRVHRVNHAPANAQEHEAARPSPQHQYQP-PYASAQPRQPVQQPPEAQVPPQHAPRP 121
Query: 113 ----PSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P P ++ ++ + P++ P SP P P
Sbjct: 122 AQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVH 158
Score = 28.5 bits (64), Expect = 1.7
Identities = 12/54 (22%), Positives = 13/54 (24%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P Q P QP P P P+ P P P P
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQP 179
Score = 27.3 bits (61), Expect = 4.4
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 79 RQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR 133
Q PV+ Q Q S P QP P P + E ++ P+
Sbjct: 142 LQQPVSPQVAPAPQPVHSAP---QPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPK 193
Score = 27.3 bits (61), Expect = 4.8
Identities = 11/64 (17%), Positives = 19/64 (29%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
PV Q + + PV+ +P P +P + + P P P
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAP 187
Query: 142 SNEP 145
+
Sbjct: 188 VMDK 191
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 30.6 bits (69), Expect = 0.38
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYA 149
+++ S+P +P A P P + E + + P PR P P S EP A
Sbjct: 382 RLDMSIPANLLHNAPQAAPAPSAAAPEPKHQ-----PAPEPRPVLAPTPASGEPNAAA 434
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 30.8 bits (70), Expect = 0.40
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 103 PPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P P P PP ++ E + +
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRAL 297
Score = 30.4 bits (69), Expect = 0.56
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 102 QPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
PP PP + PP PP ++ + E +
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298
Score = 29.6 bits (67), Expect = 0.95
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDE 120
P + P Q E PP PP P D PP +E +
Sbjct: 253 PRATRLPAPPQPPEEEPP-PPPPPPEDDDDPPEDEEEQD 290
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.7 bits (69), Expect = 0.41
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 93 VEESLPPVTQPPSPPADPTPPSP------PKEDEWKWNEQTPVEAPRSPSPPP-PPSNEP 145
V++ P P P P P P P E + TP + P P PPS +
Sbjct: 390 VKKKAPEPD-LPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQA 448
Query: 146 KTYANLLKGSHSHSTTSSYQKPLS 169
N+ G S+Q
Sbjct: 449 SAPRNVASGKPG-VDLGSWQGKFM 471
Score = 28.8 bits (64), Expect = 1.5
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKE 118
P P E PPV + P P +P
Sbjct: 418 PAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNV 454
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 30.4 bits (69), Expect = 0.44
Identities = 15/78 (19%), Positives = 22/78 (28%)
Query: 49 PNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPA 108
P E V + + Q + + PVT T V+ P +
Sbjct: 106 PYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAP 165
Query: 109 DPTPPSPPKEDEWKWNEQ 126
PK + K EQ
Sbjct: 166 VTQAVEAPKVEAEKEKEQ 183
Score = 29.6 bits (67), Expect = 0.66
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 80 QVPVTQQFPTVKQVEESLPPV-TQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPP 138
+Q ++ PP T P P P + P + + +T AP + +
Sbjct: 112 PQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVE 171
Query: 139 PPPSNEPKT 147
P K
Sbjct: 172 APKVEAEKE 180
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 30.2 bits (68), Expect = 0.51
Identities = 17/52 (32%), Positives = 20/52 (38%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYA 149
P P PP P P P+ D+ P P +P PPP N P A
Sbjct: 54 APAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPA 105
Score = 29.5 bits (66), Expect = 0.79
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
PP P P DP PP + P P P+ PPPP+ EP
Sbjct: 65 PPAAPPAPQPDDPNAAPPPPPAD----PNAPPPPPVDPNAPPPPAPEP 108
Score = 28.7 bits (64), Expect = 1.7
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTY 148
P PPS A P+ P P + +PPPPP++
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPP 92
Score = 28.3 bits (63), Expect = 2.3
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P PP P P+P P P P+ PPP
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPP 83
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family.
Length = 850
Score = 30.5 bits (69), Expect = 0.54
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 29/125 (23%)
Query: 36 SENSLFIHGGLDAPNRETKQV---------VGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ 86
SE+ ++ +A + + + V + + ++ + + + V
Sbjct: 544 SEDPVYTERVKEAVDILSNTIPPMFAEAKEVAVNALDPGAAK-SWEENNYEFLDA-VRLV 601
Query: 87 FPTVKQVEESLPPVTQPPSPPAD--------PTPPSPPKEDEWKWNEQTPVEAPRSPSPP 138
+ V+ + +++ PP P D P P PP PVE P PP
Sbjct: 602 YDAVRPIRQAVLMNRSPPELPTDSEFEREDEPADPRPP----------PPVETEPPPRPP 651
Query: 139 PPPSN 143
PPP
Sbjct: 652 PPPET 656
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 30.2 bits (68), Expect = 0.61
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 80 QVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPP 139
P ++ P P+P A + P + + P A R +P
Sbjct: 468 AQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVP---DARAPAAASREDAPAA 524
Query: 140 PPSNEPKT 147
P+
Sbjct: 525 AAPPAPEA 532
>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 30.1 bits (68), Expect = 0.62
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 17 VRQYYTLLNQAPAHL-----HRFYSENSLF----IHGGLDAPNRETKQVVGQEQIHEHIQ 67
+++ Y LL L R E +L DA + ++ EQ
Sbjct: 326 LQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAAPASDAASPLLQRAPRLEQELVLKA 385
Query: 68 QLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWK 122
++ A+ Q P + P +K E+ + + P P P W
Sbjct: 386 NVSLAAAPAQSPQAPALSKNPELKAREQLATKIKKSEPAPESSEPSLAPVRSFWG 440
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 29.9 bits (67), Expect = 0.74
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 104 PSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLK 153
PS P + P + E +P PPP P K N L+
Sbjct: 20 PSKPVVGSTPFSRSRI--PAAVDSADETSMAPPPPPSPLPLLKVSPNSLQ 67
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.0 bits (68), Expect = 0.75
Identities = 14/50 (28%), Positives = 16/50 (32%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P PSPP P + P E T AP P+ P P
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPA 491
Score = 29.6 bits (67), Expect = 1.1
Identities = 10/54 (18%), Positives = 16/54 (29%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
+ P P+P P P+ + P+P P + EP
Sbjct: 423 PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
P +P A P P + P AP + P P+
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498
Score = 28.8 bits (65), Expect = 1.8
Identities = 9/48 (18%), Positives = 11/48 (22%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P P+ PA P P P A P +
Sbjct: 615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA 662
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
+ P+P P P AP +P+ P P+
Sbjct: 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
Score = 28.0 bits (63), Expect = 3.3
Identities = 8/51 (15%), Positives = 11/51 (21%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
+ +P P P P N P+ P P
Sbjct: 418 AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468
Score = 27.6 bits (62), Expect = 4.1
Identities = 10/44 (22%), Positives = 12/44 (27%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P +P PP P+ P P AP P
Sbjct: 740 PLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
Score = 27.3 bits (61), Expect = 5.6
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 9/63 (14%)
Query: 80 QVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPP 139
P P+ + +P P P AP +P+ P
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP---------AAAPAAPAAPAAPA 504
Query: 140 PPS 142
Sbjct: 505 GAD 507
Score = 27.3 bits (61), Expect = 6.0
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P P + W + AP +P P P P
Sbjct: 644 APGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 29.9 bits (67), Expect = 0.81
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 76 AKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEA---- 131
AKI V + + +P P P+ P PP+ +P A
Sbjct: 321 AKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDL 380
Query: 132 --PRSPSPPPPPSNEPK 146
P SP P PP S+
Sbjct: 381 KPPTSPIPTPPSSSPAS 397
>gnl|CDD|221518 pfam12301, CD99L2, CD99 antigen like protein 2. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 165 and 237 amino acids in length.
CD99L2 and CD99 are involved in trans-endothelial
migration of neutrophils in vitro and in the recruitment
of neutrophils into inflamed peritoneum.
Length = 154
Score = 29.0 bits (65), Expect = 0.95
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 97 LPPVTQPPSPPADPTPPSPPKEDEWKWNEQTP-VEAPRSPSPPPPPSNEPKT 147
P +P PA P PS +D + + P P P P +P
Sbjct: 9 DDPAMKPTKKPATPKKPSKGDDDFDLEDALDGGNDGGAGPKPKPRPQPDPGN 60
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 29.2 bits (65), Expect = 1.00
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 88 PTVKQVE--ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS-PSPPPPPSNE 144
P+ +VE +S PP T+ +P + P +PP T VEAP+ P+ P S +
Sbjct: 33 PSSTKVEAPQSTPPSTKVEAPQSKPNATTPP---------STKVEAPQQTPNATTPSSTK 83
Query: 145 PKT 147
+T
Sbjct: 84 VET 86
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 29.4 bits (67), Expect = 1.0
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 4/47 (8%)
Query: 100 VTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPK 146
V A + P P AP + + P +
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAA----AAAPAPAPAAAAAPAAAAPAAA 236
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 29.4 bits (66), Expect = 1.1
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHS 157
Q S + T SP + K + + + A + E + + L S +
Sbjct: 374 SCPPQIKSSNSQQTVSSPQPQPVAKLEQGSLLTAASPQTKKETIHQEVPSPS--LSKSAA 431
Query: 158 HST 160
T
Sbjct: 432 IDT 434
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 29.1 bits (65), Expect = 1.3
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 98 PPVTQPPSPPAD-PTPPSPP 116
PP PP PP+ P
Sbjct: 920 PPAPPQAVPPPRTTQPPAAP 939
Score = 27.1 bits (60), Expect = 6.1
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 98 PPVTQP-PSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P +PP PP+PP+ P + P+ PP + P
Sbjct: 905 APGGDAASAPPPGAGPPAPPQ-------AVPPPRTTQPPAAPPRGPDVP 946
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 28.3 bits (63), Expect = 1.4
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 97 LPPVTQP--PSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
L P+T P P P PT SP TP P + P P+ P
Sbjct: 79 LAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAP 129
Score = 27.9 bits (62), Expect = 1.6
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 61 QIH-EHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKED 119
Q+H EHI + + A+ P+T P E + P T PA PTPP
Sbjct: 62 QLHNEHILSM---EQEARKILAPLTPPAPP-----EPVTPPTAQSPAPAVPTPPPTSTPA 113
Query: 120 EWKWNEQTPVEAPRSPSPPPPPSNEPK 146
V AP + PP P P+
Sbjct: 114 VPP-APAAAVPAPAAAPPPSDPPQPPR 139
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 28.8 bits (64), Expect = 1.5
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 95 ESLP--PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPS--PPPPPS 142
+SLP P ++P PP +P P P +E+K + +E+ R P+ P PPS
Sbjct: 393 KSLPAMPPSRPMGPPPNPPPIDPASLEEFK---KKILESQRLPAGIPAAPPS 441
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 28.7 bits (64), Expect = 1.5
Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 67 QQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQ 126
QL + A+I + P TQ Q +P P P P +P E
Sbjct: 112 TQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVAPAPAPEP----- 166
Query: 127 TPVEAPRSPSPPPPP 141
VE PPP
Sbjct: 167 --VEKAPKAEAAPPP 179
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 28.3 bits (63), Expect = 1.6
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 89 TVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPK 146
V Q P P P P PPK+ V A +P P P P EP
Sbjct: 93 PVAQPPVESTP-AGVPVAAQTPKPVKPPKQ-----PPAGAVPAKPTPKPEPKPVAEPA 144
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 28.6 bits (63), Expect = 1.7
Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 75 HAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADP----TPPSPPKEDEWKWNEQTPVE 130
+ + + P ++ P + + S + + P + + P + + T
Sbjct: 67 NTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTEST 126
Query: 131 APRSPSPPPPPSNEPKTYANLLKGSHSHSTTSSYQKPLSP 170
P++ PP +N P+ + + T Q ++P
Sbjct: 127 TPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTP 166
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 28.2 bits (63), Expect = 1.8
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 32 HRFYSENSLFIHGGL--DAPNRETKQVVGQEQIHEHI 66
++ L +HGGL P E + ++Q+ E +
Sbjct: 112 ALIETKKVLCVHGGLSPGLPLEEQIKEEPEDQLPEDL 148
>gnl|CDD|192714 pfam11155, DUF2935, Domain of unknown function (DUF2935). This
family of proteins with unknown function appears to be
restricted to Firmicutes. The structure of this protein
has been solved and each domain is composed of four
alpha helices. A metal cluster composed of iron and
magnesium lies between the two domains.
Length = 124
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 30 HLHRFY----SENSLFIHGGLDAPNRETKQ 55
H F+ E++LFI G LD ++ +
Sbjct: 7 EEHLFWLRIMKEHALFIRGLLDPKEKKLIE 36
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 28.4 bits (64), Expect = 1.9
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 94 EESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANL 151
+ V + +P A P +P E E R+ + P P A +
Sbjct: 96 AQREQLVARAAAPAA-PEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152
>gnl|CDD|199823 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH2) domain in
SMAD4. The MH2 domain is located at the C-terminus of
the SMAD (small mothers against decapentaplegic) family
of proteins, which are signal transducers and
transcriptional modulators that mediate multiple
signaling pathways. The MH2 domain is responsible for
type I receptor interaction, phosphorylation-triggered
homo- and hetero-oligomerization, and transactivation.
It is negatively regulated by the N-terminal MH1 domain.
SMAD4, which belongs to the Dwarfin family of proteins,
is involved in many cell functions such as
differentiation, apoptosis, gastrulation, embryonic
development and the cell cycle. SMAD4 binds receptor
regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and
forms an oligomeric complex that binds to DNA and serves
as a transcription factor. SMAD4 is often mutated in
several cancers, such as multiploid colorectal cancer,
cervical cancer and pancreatic carcinoma, as well as in
juvenile polyposis syndrome.
Length = 222
Score = 28.2 bits (63), Expect = 2.0
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 36 SENSLFIHGG-LDAPNRETKQVVGQEQIHE-----HIQQLNFRDCHAKIRQVPVTQQFPT 89
S++S+F+ LD RE + G + +H+ +I+ + R CH +++Q T Q
Sbjct: 84 SDHSVFVQSYYLD---REAGRAPG-DAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAA 139
Query: 90 VKQVEESLPPVTQPPSPPADPTPPS 114
Q + P S S
Sbjct: 140 AAQAAAVAGNIPGPGSVGGIAPAIS 164
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 28.6 bits (64), Expect = 2.1
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 9/48 (18%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
PP+P P P +P+ P P
Sbjct: 55 AQAYAPPAPAPLPAALVAP--------APAAASIA-APAAVPAPGAIG 93
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 27.8 bits (63), Expect = 2.2
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 77 KIRQVPVTQQFPTVKQVEESLPPVTQPPSP-PADPTPPSPPKEDEWKWNEQTPVEAP--- 132
+R + + PV P+ A P+ E V +P
Sbjct: 29 SVRISRAAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTSPMVG 88
Query: 133 ---RSPSPPPPP 141
R+PSP PP
Sbjct: 89 TFYRAPSPDAPP 100
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 28.3 bits (63), Expect = 2.2
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 86 QFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKW---------------NEQTPVE 130
+FP + + + P TQ DP+ + EQ +
Sbjct: 318 KFPFPTKDSQHVSPGTQNQKQ-YDPSSKTSTNSQSGTSMLEDDLKLSSSEDSDEEQATEK 376
Query: 131 APRSPSPPPPPSNEPKTYANLLKGSHSHSTTSS 163
P +PP PS+ P+ A+ S S S + S
Sbjct: 377 PPSRNTPPSAPSSNPEPAASSSGSSSSSSGSES 409
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 28.1 bits (63), Expect = 2.4
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 5/72 (6%)
Query: 80 QVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSP--PKEDEWKWNEQTPVEAPRSPSP 137
V P P+ P PP+P A + +P
Sbjct: 393 PVAQAAAAPAPAAAP---AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449
Query: 138 PPPPSNEPKTYA 149
PP P+T A
Sbjct: 450 APPAQAAPETVA 461
Score = 27.8 bits (62), Expect = 3.4
Identities = 13/70 (18%), Positives = 17/70 (24%), Gaps = 5/70 (7%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVE-----APRSP 135
P P + P P + PA P PV A S
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
Query: 136 SPPPPPSNEP 145
+P P +
Sbjct: 476 APAPAAAPAA 485
>gnl|CDD|235709 PRK06132, PRK06132, hypothetical protein; Provisional.
Length = 359
Score = 28.1 bits (63), Expect = 2.6
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 107 PADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
P P+P + P AP + +
Sbjct: 187 PKAAPAPAPASDAAANGRPAAPAPAPAEAAWADADA 222
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 28.0 bits (62), Expect = 2.7
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 94 EESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTP---VEAPRSPSPPPPPSNE 144
+ P T P P + EA +P+PP P E
Sbjct: 213 RTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGE 266
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 27.9 bits (62), Expect = 2.8
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 91 KQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP-PSNEP-KTY 148
++ P +P P E + QTP++ P S P EP T+
Sbjct: 265 NTPAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKPEPIYTW 324
Query: 149 ANLLKGSHSHSTTSSYQKP 167
LL+ + P
Sbjct: 325 EELLRERFPSDLFAISSLP 343
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 28.3 bits (63), Expect = 2.9
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 89 TVKQVEESLPPVTQPPSPPADPTPPSPPKE--DEWKWNEQTPVEAPRSPSPPP------- 139
V +V P PP P +P P PP + D K ++ + + P PP
Sbjct: 1000 AVVRVGGIEAPEKTPPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPGSDDENG 1059
Query: 140 --PPSNEPKTYANLLKGSHSHST-TSSYQK 166
P NE K KG++ +T T +
Sbjct: 1060 ETPKGNEEKKEEQPDKGANLPNTGTKNSNF 1089
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 27.9 bits (62), Expect = 2.9
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 68 QLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQT 127
QL DC IR+ Q P V V P PP P SPP
Sbjct: 125 QLKQLDCELVIRKKEALPQPPPPAPV------VMMQPPPPHAMPPASPPA--------AQ 170
Query: 128 PVEAPRSPSPPPPPSNEPKTYA 149
P + + SPPP P++ P A
Sbjct: 171 PAPSAPASSPPPTPASPPPAKA 192
>gnl|CDD|236772 PRK10833, PRK10833, putative assembly protein; Provisional.
Length = 617
Score = 27.9 bits (63), Expect = 3.0
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 13/47 (27%)
Query: 90 VKQV------------EESLPPVTQPPSPPADPTPPSPPKEDEWKWN 124
VKQV E+ P P T P + W ++
Sbjct: 101 VKQVMLKGAVIRLTPDSEAQRSED-APVAPKGNTLPDVSDDRGWSFD 146
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 27.8 bits (62), Expect = 3.1
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 83 VTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
V Q + + L PS P SPP E + +E P P PPPPP
Sbjct: 142 VAAQEQSNSTTSDLLSSDESVPSSSTTSFPISPPTE-------EPVLEVPPPPPPPPPPP 194
>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional.
Length = 540
Score = 27.6 bits (61), Expect = 3.5
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 100 VTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSHS 159
V P P P PP +DE ++ A +P PPP+ P A + +H
Sbjct: 159 VVGPRPVPTPPGGTPPPDDDE---GDEAGAPATPAPPLHPPPAPHPHPIAEV---AHVRG 212
Query: 160 TTSSYQKP 167
T S +
Sbjct: 213 VTVSLRTQ 220
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 27.7 bits (62), Expect = 3.9
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 103 PPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P P P E E ++ P+P EP
Sbjct: 326 EEKPEEPGPDPEKPDEGE---DDAEQSGPRGHPTPGNDDEKEPDP 367
>gnl|CDD|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain
of putative mammalian glycerophosphodiester
phosphodiesterase GDE5 and similar proteins. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in putative
mammalian GDE5 and similar proteins. Mammalian GDE5 is
widely expressed in mammalian tissues, with highest
expression in the spinal chord. Although its biological
function remains unclear, mammalian GDE5 shows higher
sequence homology to fungal and plant
glycerophosphodiester phosphodiesterases (GP-GDEs, EC
3.1.4.46) than to other bacterial and mammalian GP-GDEs.
It may also hydrolyze glycerophosphodiesters to
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. In addition to C-terminal GDPD domain, all
members in this subfamily have a starch binding domain
(CBM20) in the N-terminus, which suggests these proteins
may play a distinct role in glycerol metabolism.
Length = 290
Score = 27.3 bits (61), Expect = 4.0
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 64 EHIQQLNFRDCHAKIRQVPVTQQ--FPTVKQVEESLPP 99
HI L ++ + + FPT+ V ES+P
Sbjct: 92 FHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPE 129
>gnl|CDD|216122 pfam00792, PI3K_C2, Phosphoinositide 3-kinase C2. Phosphoinositide
3-kinase region postulated to contain a C2 domain.
Outlier of pfam00168 family.
Length = 140
Score = 27.0 bits (60), Expect = 4.1
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 101 TQPPSPPADPTPPSPPKEDEWKWNEQ 126
+ S P T P KWNE
Sbjct: 15 GKLLSLPVQSTSYKPFSNPSIKWNEW 40
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 27.4 bits (61), Expect = 4.2
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P +Q + P T P P P P++ K + + P P P +
Sbjct: 62 PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Score = 26.3 bits (58), Expect = 8.6
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSP----PKEDEWKWNEQTPVEAPRSPSP 137
V + Q E PP QP P TPP P PKE + + P P
Sbjct: 47 KVLEAPTEEPQPEPE-PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKP 105
Query: 138 PPPPSNEPK 146
P P +P+
Sbjct: 106 KPKPKVKPQ 114
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 27.7 bits (61), Expect = 4.4
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 60 EQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKED 119
E + H Q LN + ++ P+ Q P +K V P V Q A P P
Sbjct: 1099 ETLKVHEQYLNLQTDSNIVKLSPLATQAPVIKSVVTQAP-VVQVTISVAPAAPVLP---- 1153
Query: 120 EWKWNEQTPVEAPRSPSPPP 139
V +P S P
Sbjct: 1154 --------AVVSPPVVSAAP 1165
Score = 26.9 bits (59), Expect = 8.4
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 78 IRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSP 137
+ Q PV Q +V LP V PP A P E P+ P S
Sbjct: 1133 VTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAE-VPIAVPVQQSV 1191
Query: 138 PPPPS 142
PS
Sbjct: 1192 DYMPS 1196
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 27.5 bits (61), Expect = 4.5
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
PV Q P+ P P P + Q S + PPP
Sbjct: 134 PVPQMPASPPGPEGEPQPGNTPVSFPPQG------SVAVPPP 169
>gnl|CDD|177451 PHA02669, PHA02669, hypothetical protein; Provisional.
Length = 210
Score = 26.9 bits (59), Expect = 4.5
Identities = 9/43 (20%), Positives = 9/43 (20%), Gaps = 7/43 (16%)
Query: 106 PPADPTPPSPPKEDEWKW-------NEQTPVEAPRSPSPPPPP 141
P PP P DE E E P
Sbjct: 143 PRQANIPPVTPYPDEVSVGVGSGPSTEHGHYEGDGPEQDLEPE 185
>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP. This family of
genes is always found in type III secretion operons,
althought its function in the processes of secretion and
virulence is unclear. Hpa stands for Hrp-associated
gene, where Hrp stands for hypersensitivity response and
virulence.
Length = 201
Score = 27.2 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 96 SLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
PP P PP D P P + P EAP P PP
Sbjct: 36 YAPPPRPEPPPPCDEDRPEPRADT---RASDPPPEAPTDADPAQPP 78
>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein. Members of
this family confer resistance to the metalloid element
tellurium and its salts.
Length = 98
Score = 26.2 bits (58), Expect = 4.6
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 98 PPVTQPPSPPADPTPPSPP 116
P PP PA P P PP
Sbjct: 1 PAAPVPPPAPAPPAPAPPP 19
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 65 HIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDE 120
H F++ A + T FP ++++E+L + + A +
Sbjct: 239 HSILNAFKNLAAIGLESGFT--FPLAEKIKEALANPSAAAAAAAAAAAAAAAAAAA 292
>gnl|CDD|234817 PRK00704, PRK00704, photosystem I reaction center protein subunit
XI; Provisional.
Length = 160
Score = 26.9 bits (60), Expect = 4.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 99 PVTQPPSPPADPTPPSPPKE 118
QP P D T P+PP +
Sbjct: 96 VGKQPNVAPPDVTVPNPPAD 115
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 27.2 bits (60), Expect = 5.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 90 VKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVE-------APRSPSPPPPPS 142
V++ EE PV P P P PP+P ++ +++ V P +P P PP
Sbjct: 274 VEECEEEECPVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPP 333
Query: 143 NEPK 146
NE K
Sbjct: 334 NEGK 337
Score = 26.5 bits (58), Expect = 8.8
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 93 VEESLPPV---TQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
EE+L P P P PP+ P ++ + VE P +P P P EP
Sbjct: 342 NEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEF--SSDVENPPNPPNPDIPEQEP 395
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 27.4 bits (60), Expect = 5.0
Identities = 18/73 (24%), Positives = 28/73 (38%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHS 157
P + Q P+P A P + P AP+ + P P + E T A + +
Sbjct: 68 PDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPA 127
Query: 158 HSTTSSYQKPLSP 170
+ TS+ K P
Sbjct: 128 DAGTSAASKKPDP 140
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 27.4 bits (61), Expect = 5.2
Identities = 16/75 (21%), Positives = 23/75 (30%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHS 157
PP + PPSP D + P +P A SP+ + + A L
Sbjct: 122 PPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEE 181
Query: 158 HSTTSSYQKPLSPLD 172
+ S P
Sbjct: 182 TARAPSSPPAEPPPS 196
Score = 27.1 bits (60), Expect = 5.8
Identities = 13/50 (26%), Positives = 15/50 (30%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
P P PPA P P P E +P P + P S
Sbjct: 114 PDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163
>gnl|CDD|237158 PRK12650, PRK12650, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 962
Score = 27.3 bits (61), Expect = 5.4
Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 12/53 (22%)
Query: 96 SLPPVTQ-------PPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
L P T P P TP P+ED T P +P+ P P
Sbjct: 912 YLRPGTDYAALDYDPRDQPLPATPTVEPEED-----GDTDWPEPVNPASDPSP 959
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 27.0 bits (60), Expect = 5.4
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 88 PTVKQVEESLPP----VTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSN 143
PT SL P + + P + K + EAP S P P +
Sbjct: 104 PTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAA 163
Query: 144 EPKTYANL 151
Sbjct: 164 AKAPANFT 171
>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.
Length = 472
Score = 27.0 bits (60), Expect = 5.5
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 76 AKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDE 120
K+ ++P + P PP+PPA+P P +DE
Sbjct: 92 LKVPEMPTGPASAPLPIARPDNPD--APPTPPANPGNPGQVNDDE 134
>gnl|CDD|217428 pfam03213, Pox_P35, Poxvirus P35 protein.
Length = 325
Score = 26.9 bits (60), Expect = 5.5
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 106 PPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYA 149
PP++ P E + SP+P P P +P
Sbjct: 19 PPSEVIPDLKSLVIEADEVDDVKDPPKPSPAPAPLPKPKPDPSP 62
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 27.3 bits (60), Expect = 5.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 101 TQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
TQ P P+P +W T PR+P+P PP+ P
Sbjct: 667 TQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPP 711
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine
protease mycosin. Members of this family are
subtilisin-related serine proteases, found strictly in
the Actinobacteria and associated with type VII
secretion operons. The designation mycosin is used for
members from Mycobacterium [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair].
Length = 350
Score = 26.9 bits (60), Expect = 5.6
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 19/56 (33%)
Query: 97 LPPVTQPPSPP-ADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANL 151
LPP P P P P P+PPPPP + P+ L
Sbjct: 286 LPPEDGRPLRPAPAPARPVAA------------------PAPPPPPDDTPRGRVAL 323
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 26.6 bits (59), Expect = 5.6
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P ++ V P + PP PP + P PP EP
Sbjct: 48 PGLEDVTVQTTPPPPASAITNGGPPPPPPAR------AEAASPPPPEAPAEPPAEPEP 99
>gnl|CDD|147296 pfam05038, Cytochrom_B558a, Cytochrome Cytochrome b558
alpha-subunit. Cytochrome b-245 light chain (p22-phox)
is one of the key electron transfer elements of the
NADPH oxidase in phagocytes.
Length = 186
Score = 26.8 bits (59), Expect = 5.7
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSP 137
+ PPV P PP PP E K E+ V A +P P
Sbjct: 138 KERPPVGGTIKQPPSNPPPRPPAEARKKPLEELGVSAYVNPIP 180
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 27.1 bits (60), Expect = 5.8
Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAP------RSPSPPPPPSNEPKTYANLL 152
P + PP E+E K E +P E+ RSPS P
Sbjct: 258 PRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLAS 317
Query: 153 KGSHSHSTTSSYQKPLSP 170
G S KP SP
Sbjct: 318 PGKSPRDPLSPRPKPQSP 335
>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 27.1 bits (61), Expect = 5.9
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 24/71 (33%)
Query: 69 LNFRDCHAKIRQVPVTQQ----FPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWN 124
++F D IR V V + +P PP+ +P A P+ +
Sbjct: 348 VDFDD--VVIRGVTVVRDGEITWPP--------PPIQVSAAPAAAAAAPAAKE------- 390
Query: 125 EQTPVEAPRSP 135
+ P SP
Sbjct: 391 ---EEKKPASP 398
>gnl|CDD|221170 pfam11696, DUF3292, Protein of unknown function (DUF3292). This
eukaryotic family of proteins has no known function.
Length = 641
Score = 27.1 bits (60), Expect = 6.4
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 97 LPPVTQPPSPPADPTPPSPPKEDEWKWN-EQTPVEAPRSPSPPPPPSNEPK 146
LPP PPS P SP D + N + E ++ +P P
Sbjct: 405 LPP---PPSSSLRKAPSSPASIDHKQLNLGASEEEIDQAAAPEPEAPVAEA 452
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 27.0 bits (59), Expect = 6.4
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 67 QQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQ 126
QQ + Q PV Q P +Q ++ + P Q P P ++ + Q
Sbjct: 756 QQPVAPQQQYQQPQQPVAPQ-PQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 814
Query: 127 TPVEAPRSPSPPPPPSNEPK 146
+ P+ P P P +P+
Sbjct: 815 PQYQQPQQPVAPQPQYQQPQ 834
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 26.6 bits (59), Expect = 7.0
Identities = 8/45 (17%), Positives = 9/45 (20%), Gaps = 7/45 (15%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
PP P P P W P + P
Sbjct: 94 PPPAAPAVQPPAPPARPG-------WGSGGPSQQGAGQQPGYAQP 131
>gnl|CDD|152474 pfam12039, DUF3525, Protein of unknown function (DUF3525). This
family of proteins is functionally uncharacterized. This
protein is found in viruses. Proteins in this family are
about 360 amino acids in length.
Length = 404
Score = 26.6 bits (58), Expect = 7.5
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR------SPSPPPPPSNEP 145
+V PP+ S P PP ++E P E S ++E
Sbjct: 165 EVLTVSPPIEDEISRQPKVNIPPPPNDEEVAMMTPLPAETMEKVFHDAGRSELIGDNDEQ 224
Query: 146 K 146
K
Sbjct: 225 K 225
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 26.3 bits (58), Expect = 8.9
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 18/87 (20%)
Query: 79 RQVPVTQQFPTVKQVEESLP-PVTQPPSPPADPTPPS-----------------PPKEDE 120
P + Q + P P + PA P PPS
Sbjct: 114 EPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAV 173
Query: 121 WKWNEQTPVEAPRSPSPPPPPSNEPKT 147
+ +E P +P PPPP +P T
Sbjct: 174 PAIDTPVTLELPPAPQPPPPVVPQPST 200
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 26.0 bits (57), Expect = 9.1
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 96 SLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNE 144
++ P+P P PS P TPV P+P P + E
Sbjct: 47 AVQEQVPTPAPAPAPAVPSAP----------TPVAPAA-PAPAPASAGE 84
>gnl|CDD|202456 pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain.
Length = 366
Score = 26.3 bits (58), Expect = 9.1
Identities = 8/22 (36%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 14 REFVRQYYTLL--NQAPAHLHR 33
++F+ QYY+ + +++ AHL R
Sbjct: 14 KDFINQYYSSIKRSKSEAHLAR 35
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 26.4 bits (58), Expect = 9.2
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 74 CHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPA-----------DPTPPSPPKEDEWK 122
C A ++ P Q P+++ + SL QP A +PP E +
Sbjct: 278 CQALGKECPQRSQ-PSLQDGQASLEESWQPHLARAPKGDGRGLHDPPLSPPLAAPESTAE 336
Query: 123 WNEQTPVEAPRSPSPPPPPSNEPKT 147
W ++PV +P SP P T
Sbjct: 337 WVVESPVSSPASPLESSPSLPGSLT 361
>gnl|CDD|178678 PLN03132, PLN03132, NADH dehydrogenase (ubiquinone) flavoprotein 1;
Provisional.
Length = 461
Score = 26.4 bits (58), Expect = 9.4
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 126 QTPVEAPRSPSPPPPPSNEPKTYANL 151
Q A PPPPP E + L
Sbjct: 8 QAAATAATPQPPPPPPPPEKTHFGGL 33
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 26.4 bits (58), Expect = 9.4
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGS 155
P + P SP + + +E +E++ PS+ + L+ GS
Sbjct: 97 PTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAASTLVVGS 154
>gnl|CDD|168300 PRK05934, PRK05934, type III secretion system protein; Validated.
Length = 341
Score = 26.4 bits (58), Expect = 9.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 132 PRSPSPPPPPSNEPKTYANLLKGSH 156
P SPSP P + KT N LK S
Sbjct: 36 PSSPSPTPTQVSTEKTPGNWLKLSQ 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.130 0.402
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,990,146
Number of extensions: 806843
Number of successful extensions: 3492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2370
Number of HSP's successfully gapped: 545
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.5 bits)