RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6110
(174 letters)
>3q90_A RAS GTPase-activating protein-binding protein 1; structural
genomics, structural genomics consortium, SGC, NT (A+B
proteins); 1.70A {Homo sapiens}
Length = 140
Score = 102 bits (256), Expect = 1e-28
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
MVME PSP VGREFVRQYYTLLNQAP LHRFY +NS ++HGGLD+ + V GQ+
Sbjct: 2 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 60
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
+IH + NF +CH KIR V
Sbjct: 61 EIHRKVMSQNFTNCHTKIRHV 81
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET:
EPE; 2.74A {Drosophila melanogaster}
Length = 120
Score = 84.5 bits (209), Expect = 6e-22
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 7/74 (9%)
Query: 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67
S VGREFVRQYYTLLN+AP HLHRFY+ NS +IHG E+K VVGQ +IH IQ
Sbjct: 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQREIHNRIQ 54
Query: 68 QLNFRDCHAKIRQV 81
QLNF DCHAKI QV
Sbjct: 55 QLNFNDCHAKISQV 68
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A
{Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Length = 125
Score = 84.1 bits (208), Expect = 1e-21
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 5 VTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE 64
++ + + F + YY + + L Y S+ Q+ G + I E
Sbjct: 1 MSLDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFET--------SQLQGAKDIVE 52
Query: 65 HIQQLNFRDCHAKIRQV 81
+ L F+ +I +
Sbjct: 53 KLVSLPFQKVQHRITTL 69
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural
genomics consortium, SGC, transport protein; 1.60A
{Cryptosporidium parvum} SCOP: d.17.4.2
Length = 129
Score = 84.2 bits (208), Expect = 1e-21
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
+ + P +G++FV+ YY L Y S+ Q GQ
Sbjct: 3 QSINLNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED--------TQFQGQA 54
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
I LNF+ +I +V
Sbjct: 55 NIVNKFNSLNFQRVQFEITRV 75
>2qiy_A UBP3-associated protein BRE5; deubiquitylation,
ubiquitin-specific processing proteases(UB NTF2,
protein-protein recognition; 1.69A {Saccharomyces
cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Length = 154
Score = 84.4 bits (208), Expect = 2e-21
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 4 EVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNR-------ETKQV 56
+ + Q + F++ YY + P+ L FY+ + H + + T +V
Sbjct: 6 SMGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKV 65
Query: 57 VGQEQIHEHIQQLN--FRDCHAKIRQV 81
G+E I++ + + R K+ +
Sbjct: 66 TGRENINKFFSRNDAKVRSLKLKLDTI 92
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP:
d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A
1jb5_A 1jb4_A 1jb2_A 1qma_A
Length = 127
Score = 83.4 bits (206), Expect = 2e-21
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 3 MEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQI 62
M P + +G F++ YY L + L Y + S G +Q G+ I
Sbjct: 1 MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG--------QQFQGKAAI 52
Query: 63 HEHIQQLNFRDCHAKIRQV 81
E + L F+ I
Sbjct: 53 VEKLSSLPFQKIQHSITAQ 71
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_A
Length = 140
Score = 75.4 bits (185), Expect = 4e-18
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
EFV YYT +++ L R Y + + G V GQE + E + L
Sbjct: 16 AAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNA--------VSGQESLSEFFEMLPS 67
Query: 72 R-------DCHAKIRQVPVTQ 85
DC + +Q
Sbjct: 68 SEFQISVVDCQPVHDEATPSQ 88
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 154
Score = 64.7 bits (157), Expect = 7e-14
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
++F+ YY ++++ + Y++ S + G + G + I E ++ L
Sbjct: 36 ESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNG--------NPINGYDSICEFMKALPS 87
Query: 72 R-------DCHAKIRQVPVTQQ 86
D V
Sbjct: 88 TQHDIQSLDAQRLPEGVTGDMS 109
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 32.2 bits (71), Expect = 0.075
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 87 FPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEA--PRSPSPPPPPSNE 144
+ + P+PP PT P+ P + K + PV + P+PP +
Sbjct: 434 LNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHH 493
Query: 145 PKTY 148
+
Sbjct: 494 HHHH 497
Score = 28.7 bits (62), Expect = 1.2
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPK 117
V T + E+ L P P+ +PTPP+ +
Sbjct: 455 VKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLE 491
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 31.7 bits (71), Expect = 0.093
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
P PPS + P + + PV +P +PSP
Sbjct: 30 QPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74
Score = 31.4 bits (70), Expect = 0.13
Identities = 14/67 (20%), Positives = 26/67 (38%)
Query: 97 LPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSH 156
L PP PP+ +P + P + SP+ P P S+ + + L +
Sbjct: 26 LQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAV 85
Query: 157 SHSTTSS 163
+T ++
Sbjct: 86 KQTTAAA 92
Score = 29.4 bits (65), Expect = 0.56
Identities = 12/76 (15%), Positives = 18/76 (23%), Gaps = 11/76 (14%)
Query: 96 SLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGS 155
+LP P PP P +P + T A + +
Sbjct: 17 NLPNGYMTDLQRPQPPPPPPS-----------AASPGATPGSAAASAERASTAAPVASPA 65
Query: 156 HSHSTTSSYQKPLSPL 171
+S S L
Sbjct: 66 APSPGSSGGGGFFSSL 81
Score = 26.7 bits (58), Expect = 4.8
Identities = 11/62 (17%), Positives = 17/62 (27%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHS 157
+T P P PPS + E + +P P+ + S
Sbjct: 21 GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80
Query: 158 HS 159
S
Sbjct: 81 LS 82
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export,
translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Length = 219
Score = 31.3 bits (70), Expect = 0.12
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLF 41
+ + F+ Y L + + L Y S F
Sbjct: 10 DEDSRNLATNFIANYLKLWDANRSELMILYQNESQF 45
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 31.5 bits (72), Expect = 0.13
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLL 152
P +P PAD P P + +W A +SP ++ + N+L
Sbjct: 6 MPQPKPYERPADFIDPGKPSKCKWHLGT-----AEKSPHIHRGIAHRQQITPNIL 55
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 31.2 bits (70), Expect = 0.16
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHS 157
P P SP PT PS ++ +P +P SPS P + T + S S
Sbjct: 1624 SPSYSPTSPSYSPTSPS--------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1675
Query: 158 HSTTSSYQKPLSP 170
+S TS P SP
Sbjct: 1676 YSPTSPSYSPTSP 1688
Score = 29.7 bits (66), Expect = 0.52
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 99 PVTQPPSPPADPTPPS-PPKEDEW-----KWNEQTPVEAPRSPSPPPPPSNEPKTYANLL 152
P P SP PT PS P + ++ +P +P SPS P + T +
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 153 KGSHSHSTTSSYQKPLSP 170
S S+S TS P SP
Sbjct: 1699 PTSPSYSPTSPSYSPTSP 1716
Score = 29.7 bits (66), Expect = 0.66
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P + + P P SP PT PS ++ +P +P SPS P
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--------YSPTSPSYSPTSPSYSPTS 1722
Query: 142 SNEPKTYANLLKGSHSHSTTSSYQKPLSP 170
+ T + S S+S TS P SP
Sbjct: 1723 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
Score = 27.0 bits (59), Expect = 5.0
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSH 158
P P SP PT PS ++ +P +P SPS + T + S S+
Sbjct: 1576 PSYSPTSPSYSPTSPS--------YSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627
Query: 159 STTSSYQKPLSP 170
S TS P SP
Sbjct: 1628 SPTSPSYSPTSP 1639
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.19
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 89 TVKQVEESLPPVTQPPSPPA 108
+K+++ SL S PA
Sbjct: 21 ALKKLQASLKLYA-DDSAPA 39
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich
repeat, nuclear transport; 2.8A {Saccharomyces
cerevisiae} SCOP: d.17.4.2
Length = 221
Score = 30.5 bits (68), Expect = 0.20
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLF 41
+ +F + L + L YS S F
Sbjct: 7 NDALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQF 42
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 30.7 bits (69), Expect = 0.27
Identities = 10/62 (16%), Positives = 16/62 (25%)
Query: 109 DPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSHSTTSSYQKPL 168
DP P+ P Q P +P+PP + + T
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 169 SP 170
+
Sbjct: 61 AT 62
Score = 29.5 bits (66), Expect = 0.57
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
P + P V ++ P+PPA P+ + + P++P+PP P
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKP-------KKNKKPKNPTPPRP 56
Query: 141 PSNEPKTYAN 150
+ A
Sbjct: 57 AGDNATVAAG 66
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 30.2 bits (67), Expect = 0.30
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
P+ P PT P+ P + K E PV P PP
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPP 345
Score = 27.5 bits (60), Expect = 2.3
Identities = 10/41 (24%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPP 138
V P P PT P E P+PP
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKP-LEPAPVAPSYENEPTPP 345
Score = 27.1 bits (59), Expect = 3.5
Identities = 8/41 (19%), Positives = 9/41 (21%)
Query: 107 PADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKT 147
PT P P E P +P P
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPV 346
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 30.0 bits (67), Expect = 0.33
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 83 VTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
+ Q + + P P P +P P+ P E N P +P +
Sbjct: 206 LKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEP----NNPDNPNNPDNPDNGDNNN 261
Query: 143 NE 144
++
Sbjct: 262 SD 263
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 30.3 bits (68), Expect = 0.35
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 79 RQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPP 138
+ + ++Q + + PP P P P PP+ + P +PP
Sbjct: 370 QMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPP 429
Query: 139 --PPPSNEPKTYAN 150
PP+ P+ N
Sbjct: 430 QGAPPAAPPQGVDN 443
Score = 26.0 bits (57), Expect = 6.7
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 48 APNRETKQVVGQEQIHEHIQQLNFRD---CHAKIRQVPVTQQFPTVKQVEESLPPVTQPP 104
AP+ + Q+ + + +QQ +A Q Q +P + PP PP
Sbjct: 363 APSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPP 422
Query: 105 SPPADPTPPSPP 116
P P +PP
Sbjct: 423 PPQGAPPQGAPP 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.36
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 22/58 (37%)
Query: 56 VVG--QEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESL---PP---VTQPPS 105
+ QEQ+ +++ + N P KQVE SL V+ PP
Sbjct: 341 ISNLTQEQVQDYVNKTN--------------SHLPAGKQVEISLVNGAKNLVVSGPPQ 384
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 29.7 bits (66), Expect = 0.53
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPP--SPPKEDEWKWNEQTPVEAPRSPSPPP 139
P + + P P SP PT P SP ++ +P +P SPS P
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---AYSPTSPSYSPTSPSYSP 1677
Query: 140 PPSNEPKTYANLLKGSHSHSTTSSYQKPLSP 170
+ T + S ++S TS P SP
Sbjct: 1678 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1708
Score = 28.9 bits (64), Expect = 0.99
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P + + P P SP PT P+ ++ +P +P SPS P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-SYSPTSPSYSPTSPSYSPTS 1686
Query: 142 SNEPKTYANLLKGSHSHSTTSSYQKPLSP 170
+ T N S S+S TS P SP
Sbjct: 1687 PSYSPTSPNYSPTSPSYSPTSPGYSPGSP 1715
Score = 27.4 bits (60), Expect = 2.9
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSH 158
P P SP PT PS + +P +P SPS P + T + S S+
Sbjct: 1547 PTYSPTSPAYSPTSPSY--------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598
Query: 159 STTSSYQKPLSP 170
S TS P SP
Sbjct: 1599 SPTSPSYSPTSP 1610
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 29.0 bits (65), Expect = 0.77
Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 8/53 (15%)
Query: 96 SLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTY 148
++ P P A P + + P N+P +
Sbjct: 2 AMDPSEALQRPVASDFEPQGL--------SEAARWNSKENLLAGPSENDPNLF 46
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Length = 250
Score = 28.8 bits (64), Expect = 0.77
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 6 TPSPQCVGREFVRQYYTLLNQAP-AHLHRFYSENSLF 41
T + + + F++QYY + + L Y + +
Sbjct: 11 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACC 47
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 28.9 bits (65), Expect = 0.83
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 82 PVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
P + K E P + P P +P + W P SP P
Sbjct: 38 PHRSGPHSAKGSLEKGSPEDKEAKEPLWIRPDAPSR---CTWQLGRPAS--ESPHHHTAP 92
Query: 142 SNEPKTYANLL 152
+ PK ++L
Sbjct: 93 AKSPKILPDIL 103
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 28.6 bits (63), Expect = 0.88
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 44 GGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQP 103
G +P K V + N + + + Q + + P
Sbjct: 167 GNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDN 226
Query: 104 PSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPK 146
P P +P P+ P P + P +P P N
Sbjct: 227 PDNPNNPDNPNNPDNPNNPDEPNNP-DNPNNPDNPDNGDNNNS 268
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB:
2cse_U
Length = 1289
Score = 29.0 bits (64), Expect = 0.98
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 92 QVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSN 143
++ L + P + S P EW E + P +
Sbjct: 1209 YIQHPLQLLNTITLPTNEDLFLSAPDMREWAVKESGNTICILNSQGFVLPQD 1260
>2ztb_A Crystal protein; beta-hairpin, toxin; 2.38A {Bacillus thuringiensis
serovar dakota}
Length = 252
Score = 28.0 bits (61), Expect = 1.7
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 103 PPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP-----------SNEPKTYANL 151
+ PP + + + V+ P+ P +NEP T
Sbjct: 42 NETYFNAVKPPITAQYGYYCYKNVGTVQYVNRPTDINPNVILAQDTLTNNTNEPFTTTIT 101
Query: 152 LKGSHSHSTTSSYQK 166
+ GS ++++T +
Sbjct: 102 ITGSFTNTSTVTSST 116
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 27.9 bits (61), Expect = 1.8
Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 8/84 (9%)
Query: 60 EQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKED 119
+ + I+ + + R Q EE + + S
Sbjct: 275 HDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKKKATDGVT-- 332
Query: 120 EWKWNEQTPVEAPRSPSPPPPPSN 143
T + S P PS+
Sbjct: 333 ------LTGINQTGDQSLPSKPSS 350
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 28.1 bits (62), Expect = 2.0
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNE--QTPVEAPRSPSPPPP-PSNE 144
P+ + + T+ P DP P P+ W P + PS P+
Sbjct: 12 PSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPTKP 71
Query: 145 PKTYAN 150
P A
Sbjct: 72 PLPPAR 77
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 27.8 bits (62), Expect = 2.3
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHS 157
PP P P PP P + P + PPPPP P+ +
Sbjct: 5 SQGQSPPVPFPAPAPPPQPPTPA--------LPHPPAQPPPPPPQQFPQFHVKSGLQIKK 56
Query: 158 HSTTSSYQ 165
++ Y+
Sbjct: 57 NAIIDDYK 64
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 27.8 bits (61), Expect = 2.3
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 122 KWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSHSTTSSYQ 165
+W S PP + + + S++H T SY
Sbjct: 839 RWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYT 882
>2v8t_A Manganese-containing pseudocatalase; manganese catalase,
oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A
2cwl_A
Length = 302
Score = 27.4 bits (60), Expect = 2.9
Identities = 14/99 (14%), Positives = 22/99 (22%), Gaps = 19/99 (19%)
Query: 64 EHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQ-----------PPSPPADPTP 112
H + + V +T+ P K +P + SP
Sbjct: 187 VHAAA--YGKALESLTGVEMTKMLPIPKIDNSKIPEAKKYMDLGFHRNLYRFSPEDYRDL 244
Query: 113 ------PSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
SP E + P P + P
Sbjct: 245 GLIWKGASPEDGTEVVVVDGPPTGGPVFDAGHDAAEFAP 283
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 27.3 bits (61), Expect = 3.0
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 104 PSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
+ ADPT + P + + + P +P P P +
Sbjct: 286 GAANADPTTSANPNPAQLNEADLHALIDPAAPGIPTPGA 324
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 27.2 bits (61), Expect = 3.1
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 103 PPSPPADPTPPSPPKEDEW-KWNEQTPVEAPRSPSPPPPPSNE 144
P PPA P+ P W + P P PP +++
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSK 44
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 26.2 bits (57), Expect = 3.4
Identities = 11/54 (20%), Positives = 15/54 (27%)
Query: 96 SLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYA 149
L + P +PP P PS + + S S E A
Sbjct: 11 DLENIQIPDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVA 64
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 27.0 bits (59), Expect = 3.5
Identities = 12/72 (16%), Positives = 26/72 (36%)
Query: 75 HAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134
+ + V ++ + + +P A P P P+ + ++ + + A S
Sbjct: 433 YLNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPS 492
Query: 135 PSPPPPPSNEPK 146
PP P+ P
Sbjct: 493 CLPPEVPTQLPG 504
>3loi_A Putative uncharacterized protein; beta barrel, unknown function;
2.10A {Branchiostoma belcheri tsingtauense} PDB:
3lzz_A*
Length = 172
Score = 26.5 bits (58), Expect = 3.5
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 20 YYTLLNQAPAHLHRFYSENSLFIHGG 45
YY + P HR S+ + + G
Sbjct: 57 YYLMQAGQPDPFHRVKSDETFVHNLG 82
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 26.6 bits (58), Expect = 4.0
Identities = 14/71 (19%), Positives = 25/71 (35%)
Query: 76 AKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSP 135
++ ++P Q +V V + Q PP +P P+ + + P
Sbjct: 23 HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82
Query: 136 SPPPPPSNEPK 146
P P P +P
Sbjct: 83 KPKPKPKPKPV 93
Score = 25.8 bits (56), Expect = 6.7
Identities = 21/85 (24%), Positives = 25/85 (29%)
Query: 63 HEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWK 122
H H L R H + QV V P +PP P P E E +
Sbjct: 7 HHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPE 66
Query: 123 WNEQTPVEAPRSPSPPPPPSNEPKT 147
+ P EAP P P
Sbjct: 67 PIPEPPKEAPVVIEKPKPKPKPKPK 91
Score = 25.8 bits (56), Expect = 7.4
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
+ VT P + +++ P +P P P P E + P P+ P
Sbjct: 35 ISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 94
Query: 141 PSNEP 145
E
Sbjct: 95 KVQEQ 99
Score = 25.8 bits (56), Expect = 7.6
Identities = 16/89 (17%), Positives = 29/89 (32%)
Query: 81 VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
V + + + + P V + P P P P K E + PVE+ +
Sbjct: 59 VEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENT 118
Query: 141 PSNEPKTYANLLKGSHSHSTTSSYQKPLS 169
+ S ++ +S + LS
Sbjct: 119 APARLTSSTATAATSKPVTSVASGPRALS 147
Score = 25.4 bits (55), Expect = 9.5
Identities = 9/71 (12%), Positives = 17/71 (23%)
Query: 80 QVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPP 139
+ Q + P +P P P K + PV+ +
Sbjct: 44 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 103
Query: 140 PPSNEPKTYAN 150
E + +
Sbjct: 104 VKPVESRPASP 114
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.0 bits (59), Expect = 4.0
Identities = 9/48 (18%), Positives = 12/48 (25%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P + P A T + P AP P P +
Sbjct: 16 PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63
Score = 26.6 bits (58), Expect = 4.7
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 96 SLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
S + S + + V P P PP P + P
Sbjct: 12 SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Score = 25.9 bits (56), Expect = 8.6
Identities = 9/48 (18%), Positives = 11/48 (22%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P S P P+PPPPP+
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAA 58
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 27.1 bits (60), Expect = 4.1
Identities = 12/53 (22%), Positives = 16/53 (30%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYAN 150
T+ P PP+ + WN Q P + P EP N
Sbjct: 8 DAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRN 60
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Chromobacterium violaceum}
Length = 407
Score = 26.6 bits (57), Expect = 4.6
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 99 PVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPP 138
P+T+P + P D + P+ + P
Sbjct: 11 PLTRPQALETQAAAPQSDAPDASAGQTRAA---PQGSAAP 47
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain,
lipid cubic phase, monoolein, peroxide, electron
transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus
thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A*
3qju_A* 3qjv_A* 4esl_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A*
3qjt_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
Length = 569
Score = 26.6 bits (59), Expect = 4.7
Identities = 4/28 (14%), Positives = 6/28 (21%)
Query: 114 SPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
S ++ E E P
Sbjct: 501 SRERKPELAEAPLPFAEVISGPEDRRLV 528
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 26.7 bits (59), Expect = 4.9
Identities = 5/41 (12%), Positives = 10/41 (24%)
Query: 105 SPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEP 145
P +P ++ + A +P P
Sbjct: 445 QPKGEPEVNVKALQEIYNGIMAPQTVAEEEVAPAEAVETAP 485
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme,
oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus
subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A*
2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Length = 363
Score = 26.4 bits (58), Expect = 5.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 14 REFVRQYYTLLNQAPAHLHR 33
+ F+ + Y L + R
Sbjct: 12 KAFIAECYQELGKEEEVKDR 31
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 26.3 bits (57), Expect = 6.9
Identities = 12/96 (12%), Positives = 18/96 (18%)
Query: 75 HAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS 134
H K R P Q P PP PA + + +
Sbjct: 3 HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62
Query: 135 PSPPPPPSNEPKTYANLLKGSHSHSTTSSYQKPLSP 170
+ + H H+
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 26.2 bits (58), Expect = 7.1
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 84 TQQFPTVKQVEESL--PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPP 141
++P ++ + + L P + P P P + + Q ++ P P
Sbjct: 351 QGRYPLIQTLRQELSLPYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADGLYPNP 410
Query: 142 SNEPKTY 148
Y
Sbjct: 411 RERSSFY 417
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 205
Score = 25.8 bits (56), Expect = 7.3
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 6 TPSPQCVGREFVRQYYTLLNQAPAHLHR------FYSENSLF 41
+ + + EF+ YY + + A R + + NS F
Sbjct: 9 SDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTF 50
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
3b0j_A* 3b0l_A* 3b0h_A*
Length = 591
Score = 26.2 bits (58), Expect = 7.3
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 91 KQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQ 126
+VE+ +P + P D + D + Q
Sbjct: 353 AEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQ 388
>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural
genomics, structural genomics of pathogenic protozoa
consortium, SGPP; 2.35A {Leishmania major}
Length = 225
Score = 25.9 bits (56), Expect = 7.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 20 YYTLLNQAPAHLHRFYSENSLFIHGG 45
Y+ ++P+HLHR S+ + H G
Sbjct: 64 YFLCTPESPSHLHRLCSDETWMYHAG 89
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 25.7 bits (56), Expect = 8.3
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPK 146
P QPP+PP PS ++ + P P
Sbjct: 23 IPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPP 71
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 25.7 bits (57), Expect = 8.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 95 ESLPPVTQPPSPPADPTPPSPP 116
ES+ P T+ P+ P P PP
Sbjct: 4 ESVNPETRAPAAPGAPELREPP 25
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 25.7 bits (57), Expect = 8.9
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 89 TVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
T + + +++PPV P+ + P + + PV P+
Sbjct: 2 TEETISQAVPPVRDWPAVDLPGSDFDPVLT---ELMREGPVTRISLPNGEGW 50
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 25.7 bits (57), Expect = 9.3
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 7/62 (11%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYAN---L 151
+ LP P PP + + R P + K + L
Sbjct: 502 DELPRAEFDPGQDTYQHPPKDSSGQRVAVSP----TSQRLQLLEPFDKWDGKDLEDLQIL 557
Query: 152 LK 153
+K
Sbjct: 558 IK 559
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius}
Length = 324
Score = 25.8 bits (56), Expect = 9.7
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQ 126
S + P P+ +W NE
Sbjct: 22 ASKNDKEYSLAEEHIKNLPEAPEGYKWVVNED 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.130 0.402
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,693,043
Number of extensions: 150048
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 982
Number of HSP's successfully gapped: 214
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)