RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6110
(174 letters)
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
{Cryptosporidium parvum [TaxId: 5807]}
Length = 117
Score = 79.1 bits (195), Expect = 3e-20
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
+G++FV+ YY L Y S+ Q GQ I LNF
Sbjct: 4 IGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED--------TQFQGQANIVNKFNSLNF 55
Query: 72 RDCHAKIRQV 81
+ +I +V
Sbjct: 56 QRVQFEITRV 65
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 79.3 bits (195), Expect = 3e-20
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLD-------APNRETKQVVGQE 60
+ Q + F++ YY + P+ L FY+ + H T +V G+E
Sbjct: 2 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRE 61
Query: 61 QIHEHIQQLN--FRDCHAKIRQVPVTQQFPT 89
I++ + + R K+ +
Sbjct: 62 NINKFFSRNDAKVRSLKLKLDTIDFQYTGHL 92
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 79.1 bits (195), Expect = 4e-20
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 9 PQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68
+ + F + YY + + L Y S+ Q+ G + I E +
Sbjct: 2 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFET--------SQLQGAKDIVEKLVS 53
Query: 69 LNFRDCHAKIRQV 81
L F+ +I +
Sbjct: 54 LPFQKVQHRITTL 66
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 125
Score = 77.6 bits (191), Expect = 1e-19
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 7 PSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHI 66
P + +G F++ YY L + L Y + S G +Q G+ I E +
Sbjct: 3 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG--------QQFQGKAAIVEKL 54
Query: 67 QQLNFRDCHAKIRQV 81
L F+ I
Sbjct: 55 SSLPFQKIQHSITAQ 69
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 69.6 bits (170), Expect = 2e-16
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
EFV YYT +++ L R Y + + G V GQE + E + L
Sbjct: 15 AAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEMLPS 66
Query: 72 RDCHAKIRQV 81
+I V
Sbjct: 67 --SEFQISVV 74
>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor
MEX67 {Yeast (Candida albicans) [TaxId: 5476]}
Length = 205
Score = 30.8 bits (69), Expect = 0.057
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 16 FVRQYYTLLNQAPAHLHRFYSENSLF 41
F+ Y L + + L Y S F
Sbjct: 8 FIANYLKLWDANRSELMILYQNESQF 33
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein
BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Length = 134
Score = 29.4 bits (66), Expect = 0.099
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 30 HLHRFY----SENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ 85
+ RF+ E+S F+ G + + + + ++ + F
Sbjct: 15 NEIRFWSRIMKEHSFFLRLGFRCEDTQLIE-----EANQFYRL--FEHIEQIAHSYTNET 67
Query: 86 QFPTVKQVEE 95
+K+
Sbjct: 68 DPEQIKRFNA 77
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 135
Score = 27.9 bits (62), Expect = 0.43
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 28 PAHLHRFY----SENSLFIHGGLDAPNRETKQ 55
H H + + ++ I GGLD + K+
Sbjct: 4 ELHYHLVWLTDAAGHAGSISGGLDLVEKRLKE 35
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 121
Score = 27.4 bits (61), Expect = 0.46
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 30 HLHRFYS----ENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ 85
H+F+ +++ F+ L +E + + ++ F + K+R V +
Sbjct: 8 FEHQFWLKVLTDHAQFLLDALAPKEKEDIK-----KATYFVET--FTNLLNKVRNVNLMA 60
>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor
MEX67 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 221
Score = 28.0 bits (62), Expect = 0.54
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLF 41
+F + L + L YS S F
Sbjct: 13 SSTDFATNFLNLWDNNREQLLNLYSPQSQF 42
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 27.1 bits (60), Expect = 0.79
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 98 PPVTQPPSPPADPTPPSPPKED 119
+ P P P + P D
Sbjct: 27 ATTGAAGTAPTAPQPTAAPSID 48
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein
BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Length = 130
Score = 26.3 bits (58), Expect = 1.3
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 30 HLHRFYS----ENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPV 83
+ F+ +++ FI LD R+ + + P
Sbjct: 9 KENVFFLRIMADHAKFIGHLLDPSERKLV-----DTARNFSNDFDELMYQAIDLESMKPQ 63
Query: 84 TQQFPTVKQVEE 95
+Q P + Q +
Sbjct: 64 SQTAPLLDQFLD 75
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 26.8 bits (58), Expect = 1.4
Identities = 8/84 (9%), Positives = 18/84 (21%)
Query: 45 GLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPP 104
G+ + + + IHE + + P ++ S
Sbjct: 87 GVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAE 146
Query: 105 SPPADPTPPSPPKEDEWKWNEQTP 128
+P +Q
Sbjct: 147 QEAKAKKANNPQHSLTKDEIKQYI 170
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 26.9 bits (59), Expect = 1.5
Identities = 8/54 (14%), Positives = 11/54 (20%), Gaps = 14/54 (25%)
Query: 89 TVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPS 142
T + P + AD + P P P S
Sbjct: 370 TTTSTVTAAPSGYSATTMAADLATAFGL---------TASI-----PIPTIPTS 409
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 26.8 bits (59), Expect = 1.7
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 95 ESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKG 154
+SL P P A+PTPP AP S P + + + ++ KG
Sbjct: 1 DSLAPEDGSHRPAAEPTPPGAQP------------TAPGSLKAPDTRNEKLNSLEDVRKG 48
Query: 155 SHSHSTTSSYQKPLS 169
S +++ T++ ++
Sbjct: 49 SENYALTTNQGVRIA 63
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
domain {Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 25.4 bits (56), Expect = 3.6
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 14 REFVRQYYTLLNQAPAHLHR 33
+ F+ + Y L + R
Sbjct: 12 KAFIAECYQELGKEEEVKDR 31
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 25.3 bits (54), Expect = 3.7
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 88 PTVKQVEESLPPVTQPPSPPADPTPPSPPKED 119
P + + PP+ P + P P P+ED
Sbjct: 137 PFSRLYRGAAPPLPPPEALPKGPEEGEIPRED 168
>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
[TaxId: 38902]}
Length = 574
Score = 24.8 bits (53), Expect = 7.0
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 98 PPVTQPPSPPADPTPPSPPKEDEWK-----WNEQTPVEAPRSPS--PPPPPSNEPKTYA 149
P P DP P+ PK + + + T A +S PP
Sbjct: 193 EPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRFATQSEHFLADPPGLRSNADET 251
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.130 0.402
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,715
Number of extensions: 31691
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 31
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)