BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6111
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse
           Flotillin 2 Protein
          Length = 143

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 39/54 (72%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTA 54
           ++ IY+DR +F+K V +VA+ D+  MGI ++S+T+KD+ D   YL SLG  +T+
Sbjct: 85  VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS 138


>pdb|2GUW|A Chain A, Crystal Structure Of Amp Nucleosidase From Salmonella
           Typhimurium Lt2
 pdb|2GUW|B Chain B, Crystal Structure Of Amp Nucleosidase From Salmonella
           Typhimurium Lt2
 pdb|2GUW|C Chain C, Crystal Structure Of Amp Nucleosidase From Salmonella
           Typhimurium Lt2
          Length = 484

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 101 EIKKATYDAEVETKSTPTIDVARRLKPYTASTT 133
           E+++A YDA       P  +V +RL+  T  TT
Sbjct: 346 EVQRALYDATKAVSGMPGEEVKQRLRTGTVVTT 378


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,960,059
Number of Sequences: 62578
Number of extensions: 85907
Number of successful extensions: 128
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 4
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)