Query psy6111
Match_columns 133
No_of_seqs 118 out of 358
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:54:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2668|consensus 100.0 3.7E-30 7.9E-35 214.3 9.5 125 1-126 115-241 (428)
2 COG2268 Uncharacterized protei 99.7 2.5E-17 5.3E-22 144.3 11.2 126 1-127 157-304 (548)
3 cd03405 Band_7_HflC Band_7_Hfl 99.3 9.7E-11 2.1E-15 92.0 12.4 83 1-83 110-193 (242)
4 cd03407 Band_7_4 A subgroup of 99.3 6.8E-11 1.5E-15 94.9 11.7 90 1-90 102-191 (262)
5 cd03403 Band_7_stomatin_like B 99.2 4.9E-11 1.1E-15 92.0 9.5 84 1-84 103-186 (215)
6 cd03401 Band_7_prohibitin Band 99.1 2.6E-10 5.7E-15 86.8 8.0 80 1-80 111-193 (196)
7 cd03399 Band_7_flotillin Band_ 99.1 1.7E-10 3.7E-15 83.0 4.9 52 1-52 77-128 (128)
8 cd03404 Band_7_HflK Band_7_Hfl 99.0 5E-09 1.1E-13 83.7 12.5 83 1-83 132-217 (266)
9 KOG2620|consensus 99.0 6.2E-10 1.3E-14 90.7 6.6 109 1-109 116-228 (301)
10 TIGR01932 hflC HflC protein. H 99.0 6.8E-09 1.5E-13 85.9 10.7 103 1-110 166-268 (317)
11 TIGR01933 hflK HflK protein. H 98.9 2.6E-08 5.6E-13 79.5 12.3 82 1-82 105-189 (261)
12 COG0330 HflC Membrane protease 98.7 1.1E-07 2.4E-12 76.7 8.9 89 2-90 132-221 (291)
13 PRK11029 FtsH protease regulat 98.7 1.8E-07 3.8E-12 78.5 10.4 107 1-114 136-282 (334)
14 PF01145 Band_7: SPFH domain / 98.6 1.4E-07 3.1E-12 69.5 6.6 67 2-68 111-178 (179)
15 cd03406 Band_7_3 A subgroup of 98.6 1E-06 2.2E-11 72.3 12.0 94 2-98 116-220 (280)
16 PRK10930 FtsH protease regulat 98.4 3.2E-06 7E-11 72.9 12.1 99 1-99 201-304 (419)
17 smart00244 PHB prohibitin homo 98.1 6.2E-06 1.3E-10 59.8 4.6 50 1-50 108-158 (160)
18 cd02106 Band_7 The band 7 doma 98.0 1E-05 2.2E-10 55.3 4.6 50 2-51 71-120 (121)
19 cd03400 Band_7_1 A subgroup of 97.7 5.8E-05 1.3E-09 53.7 4.9 49 1-49 72-121 (124)
20 cd03408 Band_7_5 A subgroup of 97.3 0.00031 6.7E-09 53.6 4.5 49 1-49 154-204 (207)
21 KOG2621|consensus 97.1 0.0019 4E-08 53.4 6.8 71 2-72 162-232 (288)
22 cd03402 Band_7_2 A subgroup of 97.1 0.0013 2.9E-08 51.9 5.7 61 6-66 118-178 (219)
23 PF13421 Band_7_1: SPFH domain 92.6 0.28 6.1E-06 38.7 5.2 46 2-47 157-202 (211)
24 KOG3083|consensus 92.0 0.23 5E-06 40.4 4.0 80 3-82 138-220 (271)
25 KOG3090|consensus 88.9 2 4.4E-05 35.1 7.0 81 3-83 149-232 (290)
26 KOG2962|consensus 84.7 21 0.00046 29.5 12.3 111 9-119 142-259 (322)
27 COG4260 Membrane protease subu 80.0 3.4 7.3E-05 34.9 4.6 43 6-48 188-230 (345)
28 cd03403 Band_7_stomatin_like B 64.1 26 0.00056 26.6 5.9 32 62-93 153-184 (215)
29 cd03405 Band_7_HflC Band_7_Hfl 63.6 52 0.0011 25.4 7.7 49 64-112 163-215 (242)
30 cd03407 Band_7_4 A subgroup of 63.3 16 0.00034 29.2 4.7 21 62-82 152-172 (262)
31 cd03404 Band_7_HflK Band_7_Hfl 60.9 22 0.00047 28.2 5.1 19 64-82 187-205 (266)
32 TIGR01932 hflC HflC protein. H 59.3 67 0.0014 26.6 7.9 36 84-119 231-266 (317)
33 TIGR01933 hflK HflK protein. H 46.6 92 0.002 24.5 6.6 45 66-110 162-210 (261)
34 PF10581 Synapsin_N: Synapsin 45.6 7.7 0.00017 21.9 0.2 12 41-52 18-29 (32)
35 KOG2668|consensus 43.7 2E+02 0.0044 25.2 8.4 61 57-117 251-321 (428)
36 PRK11029 FtsH protease regulat 43.6 1.7E+02 0.0036 24.8 8.0 48 64-118 228-275 (334)
37 PTZ00491 major vault protein; 43.4 1.5E+02 0.0032 28.6 8.2 26 23-48 623-649 (850)
38 KOG2620|consensus 42.2 59 0.0013 27.3 4.9 57 62-118 166-226 (301)
39 COG2984 ABC-type uncharacteriz 41.0 19 0.00041 30.6 1.9 43 9-51 170-213 (322)
40 PTZ00491 major vault protein; 34.3 1.9E+02 0.0041 27.9 7.4 18 60-77 716-733 (850)
41 PRK10930 FtsH protease regulat 32.9 2.2E+02 0.0048 24.8 7.3 20 64-83 256-275 (419)
42 PF03179 V-ATPase_G: Vacuolar 30.4 1.8E+02 0.0039 19.8 5.4 35 54-88 12-46 (105)
43 PRK14643 hypothetical protein; 30.0 90 0.0019 23.7 3.9 32 6-37 2-33 (164)
44 TIGR02686 relax_trwC conjugati 27.9 1.5E+02 0.0033 24.4 5.2 47 2-50 177-229 (283)
45 PF03780 Asp23: Asp23 family; 27.5 1.2E+02 0.0025 20.4 3.9 26 10-35 76-102 (108)
46 PF11273 DUF3073: Protein of u 26.4 35 0.00075 22.5 0.9 20 113-132 4-23 (65)
47 KOG1533|consensus 26.3 90 0.0019 26.0 3.5 33 16-48 117-152 (290)
48 PF04392 ABC_sub_bind: ABC tra 26.3 74 0.0016 25.4 3.1 43 7-49 140-182 (294)
49 KOG4234|consensus 25.0 91 0.002 25.6 3.3 44 3-48 214-263 (271)
50 PF02120 Flg_hook: Flagellar h 22.1 1.8E+02 0.0039 18.5 3.8 29 12-40 53-81 (85)
51 PRK14633 hypothetical protein; 21.7 1.5E+02 0.0034 22.0 3.8 27 11-37 2-28 (150)
52 smart00545 JmjN Small domain f 21.4 29 0.00063 20.7 -0.1 22 27-48 1-22 (42)
53 PRK08475 F0F1 ATP synthase sub 20.6 3.7E+02 0.008 20.0 8.3 20 94-113 110-129 (167)
54 PF09938 DUF2170: Uncharacteri 20.1 27 0.00058 26.2 -0.6 42 5-53 69-110 (140)
No 1
>KOG2668|consensus
Probab=99.96 E-value=3.7e-30 Score=214.28 Aligned_cols=125 Identities=54% Similarity=0.704 Sum_probs=123.0
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCch--HHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEG--YLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMA 78 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~g--yi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a 78 (133)
|||||+||+.|+..|++.+.+||.+|||.|+||||+|+.|.+| ||++||+..+++++++|+|++|||+||+.|+++.+
T Consensus 115 vEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~ 194 (428)
T KOG2668|consen 115 VEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATG 194 (428)
T ss_pred HHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhH
Confidence 6999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHhcHHHHHHhhHHHHHHhhcCchHHHHHhcC
Q psy6111 79 EEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLK 126 (133)
Q Consensus 79 ~~ea~~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A~~~a~~~~ 126 (133)
..+.+.+++.++++|+.++|+++++++.++.++++.+++| ++||.|-
T Consensus 195 ~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA-~lAyelq 241 (428)
T KOG2668|consen 195 LTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEA-DLAYELQ 241 (428)
T ss_pred HHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999 9999884
No 2
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2.5e-17 Score=144.25 Aligned_cols=126 Identities=29% Similarity=0.395 Sum_probs=116.5
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCC-------chHHHhcCchHhhHHHhhhHHHHHHhhhHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDD-------EGYLKSLGMARTAEVKRDARIGEAEAKKDARI 73 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~-------~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I 73 (133)
|++|++||..|...|.+.+.+||.+|||.|+||.|+|+.|+ +|||+++|++.++++.+++.|++.|++++++|
T Consensus 157 ~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i 236 (548)
T COG2268 157 VEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEI 236 (548)
T ss_pred HHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHH
Confidence 57899999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh---------------hHHHHHHHhcHHHHHHhhHHHHHHhhcCchHHHHHhcCc
Q psy6111 74 KEAMAEEEKMAARFV---------------NDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLKP 127 (133)
Q Consensus 74 ~~A~a~~ea~~ak~~---------------ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A~~~a~~~~~ 127 (133)
..+++.+++..++.. -.+.++..++.....+++...+.+.++..| +.++.++.
T Consensus 237 ~i~~a~~~a~~~e~~v~~q~~~~~a~~~~~~ki~~a~~e~e~~~~~ae~~~~a~~a~~~A-eq~~~~~~ 304 (548)
T COG2268 237 AIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILA-EQAIQEEK 304 (548)
T ss_pred HHHhhhhHHHHHhhhhhcccccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999988887 345668889999999999999999999999 77776654
No 3
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.27 E-value=9.7e-11 Score=91.97 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=76.2
Q ss_pred ChhHHHh-HHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHH
Q psy6111 1 MKDIYKD-RKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAE 79 (133)
Q Consensus 1 VEei~~d-R~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~ 79 (133)
+++++++ |..+++.|.+.+.++|.+||+.|.+++|++|..|..+.+++..+..++.++.|.+.++++++++.+..++++
T Consensus 110 ~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~ 189 (242)
T cd03405 110 LIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADAD 189 (242)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4688888 999999999999999999999999999999999999999999999999999999999999988888777777
Q ss_pred HHHH
Q psy6111 80 EEKM 83 (133)
Q Consensus 80 ~ea~ 83 (133)
+++.
T Consensus 190 ~~~~ 193 (242)
T cd03405 190 RERT 193 (242)
T ss_pred HHHH
Confidence 6653
No 4
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.27 E-value=6.8e-11 Score=94.90 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=83.8
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE 80 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~ 80 (133)
+++++++|..|+..|.+.+...|..||+.|++++|++|..|..+.++|...+.|+..+.|.+.+|++.+...|..|++++
T Consensus 102 l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea 181 (262)
T cd03407 102 LDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADA 181 (262)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhhH
Q psy6111 81 EKMAARFVND 90 (133)
Q Consensus 81 ea~~ak~~ae 90 (133)
++...+++++
T Consensus 182 ~a~~~~Aeg~ 191 (262)
T cd03407 182 EAKRLQGVGA 191 (262)
T ss_pred HHHHHhhhhH
Confidence 8876655544
No 5
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.25 E-value=4.9e-11 Score=92.00 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=78.5
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE 80 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~ 80 (133)
+++++++|..|...|.+.+.++|.+||+.|+++.|++|+.|++|.+++...+.|+..++|.+.+|++++++.+..+++.+
T Consensus 103 ~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~ 182 (215)
T cd03403 103 LDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAK 182 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHH
Q psy6111 81 EKMA 84 (133)
Q Consensus 81 ea~~ 84 (133)
+...
T Consensus 183 ~~~~ 186 (215)
T cd03403 183 QAAI 186 (215)
T ss_pred HHcc
Confidence 6543
No 6
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.12 E-value=2.6e-10 Score=86.81 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=63.7
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhh---HHHHHHhhhHHHHHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA---RIGEAEAKKDARIKEAM 77 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A---~Ia~AeA~rea~I~~A~ 77 (133)
+++|+++|..|+..|.+.+..+|.+||+.|.++.|++|..|++|.++++.+++|+-.... .+.+|+++++..+.+|+
T Consensus 111 ~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~ 190 (196)
T cd03401 111 AEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAE 190 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999999999999999988877654322 34445555555544444
Q ss_pred HHH
Q psy6111 78 AEE 80 (133)
Q Consensus 78 a~~ 80 (133)
++.
T Consensus 191 gea 193 (196)
T cd03401 191 GEA 193 (196)
T ss_pred hhh
Confidence 443
No 7
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.07 E-value=1.7e-10 Score=82.98 Aligned_cols=52 Identities=48% Similarity=0.853 Sum_probs=49.7
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR 52 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~ 52 (133)
+++++++|..|...|.+.+.++|.+|||+|.+++|++|.++++|+++||+++
T Consensus 77 l~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~~~ 128 (128)
T cd03399 77 VEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGDAE 128 (128)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCCCC
Confidence 4799999999999999999999999999999999999999999999999863
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.04 E-value=5e-09 Score=83.66 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=74.9
Q ss_pred ChhHHHh-HHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHH
Q psy6111 1 MKDIYKD-RKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAM 77 (133)
Q Consensus 1 VEei~~d-R~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~ 77 (133)
+++++++ |..|...|.+.+...+..| |+.|.++.|++|..|++|.++|.....|+..+++.+.+|++.++..+..|+
T Consensus 132 ~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~ 211 (266)
T cd03404 132 LDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKAR 211 (266)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3688887 9999999999999999966 999999999999999999999999999999999999999998888888877
Q ss_pred HHHHHH
Q psy6111 78 AEEEKM 83 (133)
Q Consensus 78 a~~ea~ 83 (133)
++.++.
T Consensus 212 ~ea~~~ 217 (266)
T cd03404 212 GEAARI 217 (266)
T ss_pred hHHHHH
Confidence 765553
No 9
>KOG2620|consensus
Probab=99.02 E-value=6.2e-10 Score=90.73 Aligned_cols=109 Identities=20% Similarity=0.296 Sum_probs=94.1
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE 80 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~ 80 (133)
++.+|+.|+.++..|.+.+...+.-||+++..+.|.||..|++.-.+|.+..-|+.+++|.|-++|++|++.|..|++++
T Consensus 116 LD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek 195 (301)
T KOG2620|consen 116 LDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEK 195 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhH----HHHHHHhcHHHHHHhhHHH
Q psy6111 81 EKMAARFVND----TEIAKAQRDFEIKKATYDA 109 (133)
Q Consensus 81 ea~~ak~~ae----~~IA~a~~~~~~k~Ae~~~ 109 (133)
++...-.++. ..|+...++.-+-+|....
T Consensus 196 ~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a 228 (301)
T KOG2620|consen 196 ESKILASEGIARQRQNIADGEAEAILAFADAVA 228 (301)
T ss_pred hhHHhhhHHHHHHHHHHHhhHHHHHHHHhhccc
Confidence 9865544433 3445566666666655433
No 10
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=98.96 E-value=6.8e-09 Score=85.88 Aligned_cols=103 Identities=27% Similarity=0.289 Sum_probs=79.6
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE 80 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~ 80 (133)
+++|.++|..|...|.+.+..++.+||+.|.++.|++|..|+.|.+++..+..++.++.|..-++++++++....++++.
T Consensus 166 ~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~ 245 (317)
T TIGR01932 166 AMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEY 245 (317)
T ss_pred ccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999988888888777776665554444
Q ss_pred HHHHhhhhhHHHHHHHhcHHHHHHhhHHHH
Q psy6111 81 EKMAARFVNDTEIAKAQRDFEIKKATYDAE 110 (133)
Q Consensus 81 ea~~ak~~ae~~IA~a~~~~~~k~Ae~~~e 110 (133)
++. ..++++.++..+.+|+.+++
T Consensus 246 e~~-------~~~aeA~a~a~~~~Aegea~ 268 (317)
T TIGR01932 246 EVR-------KILSEAYRTARIIKGEGDAE 268 (317)
T ss_pred HHH-------HHHHHHHHHHHHHHhhHHHH
Confidence 443 33334444444445544444
No 11
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=98.92 E-value=2.6e-08 Score=79.47 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=73.2
Q ss_pred ChhHHH-hHHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHH
Q psy6111 1 MKDIYK-DRKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAM 77 (133)
Q Consensus 1 VEei~~-dR~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~ 77 (133)
++++++ +|..+...|.+.+...|..| |+.|+++.|++|..|....+++.....|+-.+.+.+.+|++++...+..|+
T Consensus 105 l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~ 184 (261)
T TIGR01933 105 MDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKAR 184 (261)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888 89999999999999999965 999999999999999999999999999998888889899888888777776
Q ss_pred HHHHH
Q psy6111 78 AEEEK 82 (133)
Q Consensus 78 a~~ea 82 (133)
++.+.
T Consensus 185 ~~a~~ 189 (261)
T TIGR01933 185 GDAQR 189 (261)
T ss_pred HHHHH
Confidence 66654
No 12
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-07 Score=76.71 Aligned_cols=89 Identities=24% Similarity=0.282 Sum_probs=81.9
Q ss_pred hhHHHhHH-HHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111 2 KDIYKDRK-KFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE 80 (133)
Q Consensus 2 Eei~~dR~-~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~ 80 (133)
++++++|. .++..+.+.+...+..||+.|..++|+++..|..+..++-....|+..+++.|-+|++.+...+..|++++
T Consensus 132 ~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~ 211 (291)
T COG0330 132 DELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEA 211 (291)
T ss_pred HHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhH
Confidence 58889999 99999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHhhhhhH
Q psy6111 81 EKMAARFVND 90 (133)
Q Consensus 81 ea~~ak~~ae 90 (133)
++.....++.
T Consensus 212 ~a~~i~aea~ 221 (291)
T COG0330 212 EAAIILAEAE 221 (291)
T ss_pred HHHHHHHHHH
Confidence 8766555554
No 13
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=98.68 E-value=1.8e-07 Score=78.49 Aligned_cols=107 Identities=25% Similarity=0.253 Sum_probs=84.1
Q ss_pred ChhHHH-hHHHHHHHHHHHHHH---------------------------------------HHhhccceEEEeeeccccC
Q psy6111 1 MKDIYK-DRKKFSKQVFQVASS---------------------------------------DLVNMGITVVSYTLKDIRD 40 (133)
Q Consensus 1 VEei~~-dR~~f~~~V~e~a~~---------------------------------------dl~~~GL~i~s~~I~di~D 40 (133)
++++++ +|..+...|.+.+.. +|.+||++|.++.|++|..
T Consensus 136 ldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~ 215 (334)
T PRK11029 136 VKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINL 215 (334)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCC
Confidence 367886 699999999998874 3579999999999999999
Q ss_pred CchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcHHHHHHhhHHHHHHhh
Q psy6111 41 DEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114 (133)
Q Consensus 41 ~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~ea~~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~ 114 (133)
|..+.+++-..+.|+.++.|.+-++++++++....++++.++.... |++.++..+.+|+.+++....
T Consensus 216 P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~-------AeA~~~a~i~~aegeA~a~~~ 282 (334)
T PRK11029 216 PTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTL-------AEAERQGRIMRGEGDAEAAKL 282 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999988887777765433 233344444455554444433
No 14
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=98.59 E-value=1.4e-07 Score=69.45 Aligned_cols=67 Identities=25% Similarity=0.391 Sum_probs=61.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHh-hhHHHHHHhh
Q psy6111 2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR-DARIGEAEAK 68 (133)
Q Consensus 2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~-~A~Ia~AeA~ 68 (133)
++++++|..|...|.+.+.+.|..+|++|.+++|.++..+.+|.+++.....+.... ++++.+|+++
T Consensus 111 ~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 111 EEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 589999999999999999999999999999999999999999999999999888888 7777666654
No 15
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.58 E-value=1e-06 Score=72.31 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=81.2
Q ss_pred hhHHH-hHHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhh--------hHHHHHHhhhH
Q psy6111 2 KDIYK-DRKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRD--------ARIGEAEAKKD 70 (133)
Q Consensus 2 Eei~~-dR~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~--------A~Ia~AeA~re 70 (133)
+++++ +|+.+...|.+.+..+|..| |+.|.++.|+++..|....+++ ..+.++..+. |.+.+||++|.
T Consensus 116 deVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~ 194 (280)
T cd03406 116 QEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERK 194 (280)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHH
Confidence 57787 79999999999999999987 9999999999999999999999 7999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhc
Q psy6111 71 ARIKEAMAEEEKMAARFVNDTEIAKAQR 98 (133)
Q Consensus 71 a~I~~A~a~~ea~~ak~~ae~~IA~a~~ 98 (133)
..|.+|+++. +.+++.-+..|.+...
T Consensus 195 ~~~~~a~~~~--~~~~~~~~~~~~~~~~ 220 (280)
T cd03406 195 KAVIEAEKVA--QVAKILFGQKVMEKET 220 (280)
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 9988776554 4566666666655443
No 16
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=98.45 E-value=3.2e-06 Score=72.90 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=82.1
Q ss_pred ChhHHHh-HHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHH
Q psy6111 1 MKDIYKD-RKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAM 77 (133)
Q Consensus 1 VEei~~d-R~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~ 77 (133)
+++++++ |..+...|.+.+...|..+ |++|.+++|++|..|....+++.....|+..+++.|.+|++.+...+-+|+
T Consensus 201 ldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~ 280 (419)
T PRK10930 201 MDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRAN 280 (419)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678874 9999999999999999985 999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHh--hhhhHHHHHHHhcH
Q psy6111 78 AEEEKMAA--RFVNDTEIAKAQRD 99 (133)
Q Consensus 78 a~~ea~~a--k~~ae~~IA~a~~~ 99 (133)
++++.... ++..+..|..++-+
T Consensus 281 gea~~ii~~AeAyr~~~i~~AeGd 304 (419)
T PRK10930 281 GQAQRILEEARAYKAQTILEAQGE 304 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77776543 44445555444433
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=98.06 E-value=6.2e-06 Score=59.77 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=46.4
Q ss_pred ChhHHH-hHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCc
Q psy6111 1 MKDIYK-DRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGM 50 (133)
Q Consensus 1 VEei~~-dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~ 50 (133)
++++++ .|..|.+.|.+.+.++|.++|+.|.+++|++|+.|+.|.+++..
T Consensus 108 ~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~ 158 (160)
T smart00244 108 LDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQ 158 (160)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHh
Confidence 368898 69999999999999999999999999999999999999998754
No 18
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=98.00 E-value=1e-05 Score=55.29 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=46.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCch
Q psy6111 2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 51 (133)
Q Consensus 2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~ 51 (133)
+++.++|..|.+.|.+.+..+|..+|++|.++.|.+|..+..|.++++..
T Consensus 71 ~~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 71 DELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 57889999999999999999999999999999999999999999987653
No 19
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.73 E-value=5.8e-05 Score=53.73 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=44.8
Q ss_pred ChhHHH-hHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcC
Q psy6111 1 MKDIYK-DRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLG 49 (133)
Q Consensus 1 VEei~~-dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg 49 (133)
++++++ +|..|.+.|.+.+.+.|.++|+.|.+++|++|.-|..+.+++-
T Consensus 72 ~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~ 121 (124)
T cd03400 72 AEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIE 121 (124)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHH
Confidence 357886 7999999999999999999999999999999999999988764
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.34 E-value=0.00031 Score=53.57 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=44.0
Q ss_pred ChhHHHh--HHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcC
Q psy6111 1 MKDIYKD--RKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLG 49 (133)
Q Consensus 1 VEei~~d--R~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg 49 (133)
+++++.+ |..++..|.+.+.++|.+|||+|.++.|++|.-|..+.+++.
T Consensus 154 ~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~ 204 (207)
T cd03408 154 LAVMLLAANRDELSKAVREALAPWFASFGLELVSVYIESISYPDEVQKLID 204 (207)
T ss_pred CeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHH
Confidence 3567777 999999999999999999999999999999999998777664
No 21
>KOG2621|consensus
Probab=97.08 E-value=0.0019 Score=53.38 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=62.3
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHH
Q psy6111 2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDAR 72 (133)
Q Consensus 2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~ 72 (133)
.||.++|+.++.++.-.+..--..||++|..+.|+||+-|...-.+|..+.-|..+.+|.+--|+.++.+.
T Consensus 162 ~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akviaaege~~as 232 (288)
T KOG2621|consen 162 SEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKVIAAEGEKKAS 232 (288)
T ss_pred HHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhHHHHHhhhHHH
Confidence 48999999999999999999999999999999999999999988888877777777777777777766655
No 22
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.06 E-value=0.0013 Score=51.92 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHH
Q psy6111 6 KDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAE 66 (133)
Q Consensus 6 ~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~Ae 66 (133)
.+|+.++..+.+.+...|..||+.|..+.|+++.-++.+.+++-..+.|+....|+--.++
T Consensus 118 ~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~Ae~~~~Ar~~~~~ 178 (219)
T cd03402 118 GNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQASAIIAARRKIVE 178 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999888888887777654444
No 23
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=92.63 E-value=0.28 Score=38.66 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=39.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHh
Q psy6111 2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKS 47 (133)
Q Consensus 2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~a 47 (133)
-+|...-..+++.|.+.+.+++..+||+|.+|.|.+|+-|...-+.
T Consensus 157 ~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~ 202 (211)
T PF13421_consen 157 LDIPAHLDEISEALKEKLNPEFERYGIELVDFGIESISFPEEVQKA 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHH
Confidence 3677788899999999999999999999999999999888754443
No 24
>KOG3083|consensus
Probab=91.99 E-value=0.23 Score=40.43 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=59.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhh-hH--HHHHHhhhHHHHHHHHHH
Q psy6111 3 DIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRD-AR--IGEAEAKKDARIKEAMAE 79 (133)
Q Consensus 3 ei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~-A~--Ia~AeA~rea~I~~A~a~ 79 (133)
|++..|+-.+.+|.......-..+||.++.+.|..++=-..+-++...+++|+-..+ |+ +.+|+.+|.+.+-.|+++
T Consensus 138 eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGd 217 (271)
T KOG3083|consen 138 ELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGD 217 (271)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccc
Confidence 788999999999999999999999999999999998877777777777776653221 11 444555555555555554
Q ss_pred HHH
Q psy6111 80 EEK 82 (133)
Q Consensus 80 ~ea 82 (133)
.++
T Consensus 218 s~a 220 (271)
T KOG3083|consen 218 SKA 220 (271)
T ss_pred hHH
Confidence 444
No 25
>KOG3090|consensus
Probab=88.93 E-value=2 Score=35.12 Aligned_cols=81 Identities=14% Similarity=0.283 Sum_probs=66.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHh-hhH--HHHHHhhhHHHHHHHHHH
Q psy6111 3 DIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR-DAR--IGEAEAKKDARIKEAMAE 79 (133)
Q Consensus 3 ei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~-~A~--Ia~AeA~rea~I~~A~a~ 79 (133)
+++..|+..+-.|.+.+...-.++.+-++-+.|..++=...|-.+...+++|.-.. +|. +.+|+-++...|-+|+++
T Consensus 149 qLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGE 228 (290)
T KOG3090|consen 149 QLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGE 228 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccc
Confidence 57889999999999999999999999999999999998888988887777764322 222 667788888888888776
Q ss_pred HHHH
Q psy6111 80 EEKM 83 (133)
Q Consensus 80 ~ea~ 83 (133)
.++.
T Consensus 229 aksA 232 (290)
T KOG3090|consen 229 AKSA 232 (290)
T ss_pred hHHH
Confidence 6653
No 26
>KOG2962|consensus
Probab=84.73 E-value=21 Score=29.49 Aligned_cols=111 Identities=12% Similarity=0.205 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhH-----HHhhhHHHHHHhhhHHHHHHHHHHHH
Q psy6111 9 KKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAE-----VKRDARIGEAEAKKDARIKEAMAEEE 81 (133)
Q Consensus 9 ~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~-----v~~~A~Ia~AeA~rea~I~~A~a~~e 81 (133)
+..-+.+....+.||.+| ||.|.++.+..-.=|...-.++..-.... +...-.+.+.+|+-+..-..-++++-
T Consensus 142 DqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~ 221 (322)
T KOG2962|consen 142 DQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKN 221 (322)
T ss_pred HHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888889999988 88888887765555555444432111110 01112234444444444445566777
Q ss_pred HHHhhhhhHHHHHHHhcHHHHHHhhHHHHHHhhcCchH
Q psy6111 82 KMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTI 119 (133)
Q Consensus 82 a~~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A~ 119 (133)
++.+++.-...+-+...+..+-.-+-..-..+.++.|.
T Consensus 222 AqVa~I~~qqkl~EKetekr~~eiE~~~~LarekskAD 259 (322)
T KOG2962|consen 222 AQVAKILMQQKLMEKETEKRISEIEDAAFLAREKSKAD 259 (322)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhhhcc
Confidence 77777776666665544444443333444444455543
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=80.04 E-value=3.4 Score=34.87 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhc
Q psy6111 6 KDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSL 48 (133)
Q Consensus 6 ~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aL 48 (133)
.+--.++..|.+.+.+++..+|+.|+||.|-+|+-|...-..+
T Consensus 188 an~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~li 230 (345)
T COG4260 188 ANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALI 230 (345)
T ss_pred hhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHH
Confidence 3444577889999999999999999999999998877644443
No 28
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=64.08 E-value=26 Score=26.58 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHH
Q psy6111 62 IGEAEAKKDARIKEAMAEEEKMAARFVNDTEI 93 (133)
Q Consensus 62 Ia~AeA~rea~I~~A~a~~ea~~ak~~ae~~I 93 (133)
...|+.++++.+..|++++++...+.+++...
T Consensus 153 ~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~ 184 (215)
T cd03403 153 QAEAEREKRAKIIEAEGERQAAILLAEAAKQA 184 (215)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888887777777644
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=63.62 E-value=52 Score=25.43 Aligned_cols=49 Identities=31% Similarity=0.206 Sum_probs=23.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhHH----HHHHHhcHHHHHHhhHHHHHH
Q psy6111 64 EAEAKKDARIKEAMAEEEKMAARFVNDT----EIAKAQRDFEIKKATYDAEVE 112 (133)
Q Consensus 64 ~AeA~rea~I~~A~a~~ea~~ak~~ae~----~IA~a~~~~~~k~Ae~~~e~~ 112 (133)
.|+.++.+.+..+++++++...+.+++. ..|++.++..+.+|+.+++..
T Consensus 163 ~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~ 215 (242)
T cd03405 163 RAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAA 215 (242)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555566666666554433332 224444444444444444443
No 30
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=63.28 E-value=16 Score=29.22 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=13.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q psy6111 62 IGEAEAKKDARIKEAMAEEEK 82 (133)
Q Consensus 62 Ia~AeA~rea~I~~A~a~~ea 82 (133)
...|+.++++.+.+|++.+..
T Consensus 152 ~~~A~~~~~a~~~~Aea~~~~ 172 (262)
T cd03407 152 INAAQRQRVAAVHKAEAEKIK 172 (262)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 345666667777777666654
No 31
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=60.90 E-value=22 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=9.5
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q psy6111 64 EAEAKKDARIKEAMAEEEK 82 (133)
Q Consensus 64 ~AeA~rea~I~~A~a~~ea 82 (133)
.|+.+++..+.+|++++++
T Consensus 187 ~A~q~~~~~~~eae~~a~~ 205 (266)
T cd03404 187 KARQDRERLINEAEAYANE 205 (266)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 32
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=59.26 E-value=67 Score=26.56 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=20.8
Q ss_pred HhhhhhHHHHHHHhcHHHHHHhhHHHHHHhhcCchH
Q psy6111 84 AARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTI 119 (133)
Q Consensus 84 ~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A~ 119 (133)
+++..+....++++.+.....|+..++....+|++.
T Consensus 231 ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aege 266 (317)
T TIGR01932 231 QGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGD 266 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444445566666666666666666666666553
No 33
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=46.63 E-value=92 Score=24.51 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=19.2
Q ss_pred HhhhHHHHHHHHHHHHHH--HhhhhhHHHH--HHHhcHHHHHHhhHHHH
Q psy6111 66 EAKKDARIKEAMAEEEKM--AARFVNDTEI--AKAQRDFEIKKATYDAE 110 (133)
Q Consensus 66 eA~rea~I~~A~a~~ea~--~ak~~ae~~I--A~a~~~~~~k~Ae~~~e 110 (133)
+.+++..+.+|++++... .++.+++..+ |++.++..+.+|+.+++
T Consensus 162 ~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~ 210 (261)
T TIGR01933 162 REDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVA 210 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334445555555444442 3343444333 33334444444444333
No 34
>PF10581 Synapsin_N: Synapsin N-terminal; InterPro: IPR019736 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents a conserved octapeptide in the immediate N-terminal domain, which contains the phosphorylated serine residue.
Probab=45.56 E-value=7.7 Score=21.91 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=10.5
Q ss_pred CchHHHhcCchH
Q psy6111 41 DEGYLKSLGMAR 52 (133)
Q Consensus 41 ~~gyi~aLg~~~ 52 (133)
++||+..||++.
T Consensus 18 PnGYm~dl~rp~ 29 (32)
T PF10581_consen 18 PNGYMSDLQRPD 29 (32)
T ss_pred CcchhcccCCCC
Confidence 889999999874
No 35
>KOG2668|consensus
Probab=43.69 E-value=2e+02 Score=25.17 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=41.5
Q ss_pred HhhhHHHHHHhhhHHHHHHHHHHHHHH----------HhhhhhHHHHHHHhcHHHHHHhhHHHHHHhhcCc
Q psy6111 57 KRDARIGEAEAKKDARIKEAMAEEEKM----------AARFVNDTEIAKAQRDFEIKKATYDAEVETKSTP 117 (133)
Q Consensus 57 ~~~A~Ia~AeA~rea~I~~A~a~~ea~----------~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~ 117 (133)
..+.+|.+-++.+...+++++-.+.-. ++.....+.++++++.+-+++++.+++..+++=+
T Consensus 251 ~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~irk~ge 321 (428)
T KOG2668|consen 251 EEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIRKQGE 321 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455667777777777777766443322 4555667788999999888888888876654433
No 36
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=43.65 E-value=1.7e+02 Score=24.77 Aligned_cols=48 Identities=21% Similarity=0.107 Sum_probs=25.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcHHHHHHhhHHHHHHhhcCch
Q psy6111 64 EAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPT 118 (133)
Q Consensus 64 ~AeA~rea~I~~A~a~~ea~~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A 118 (133)
+|+.++.+.+..+++++++++.+.+++.+ ...-.|+..++....+|++
T Consensus 228 ~Aere~~a~~~~aege~~a~~~~a~A~~e-------~~~~~AeA~~~a~i~~aeg 275 (334)
T PRK11029 228 RAEREAVARRHRSQGQEEAEKLRATADYE-------VTRTLAEAERQGRIMRGEG 275 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHhhh
Confidence 44455555566777777766655555554 3333455555444444444
No 37
>PTZ00491 major vault protein; Provisional
Probab=43.38 E-value=1.5e+02 Score=28.56 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=19.5
Q ss_pred HhhccceEEEeeeccccCCc-hHHHhc
Q psy6111 23 LVNMGITVVSYTLKDIRDDE-GYLKSL 48 (133)
Q Consensus 23 l~~~GL~i~s~~I~di~D~~-gyi~aL 48 (133)
+...||.|+|+-|++|..-+ ..-++|
T Consensus 623 F~~N~lvit~VDvqsvEpvD~~tr~~L 649 (850)
T PTZ00491 623 FPANNLVITNVDVQSVEPVDERTRDSL 649 (850)
T ss_pred EccCCeEEEEEeeeeeeecCHHHHHHH
Confidence 35789999999999997743 355555
No 38
>KOG2620|consensus
Probab=42.21 E-value=59 Score=27.25 Aligned_cols=57 Identities=23% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHhc--HHHHHHhhHHHHHHhhcCch
Q psy6111 62 IGEAEAKKDARIKEAMAEEEKMAARFV--NDTEIAKAQR--DFEIKKATYDAEVETKSTPT 118 (133)
Q Consensus 62 Ia~AeA~rea~I~~A~a~~ea~~ak~~--ae~~IA~a~~--~~~~k~Ae~~~e~~~~~A~A 118 (133)
+.+|+..|.+.|.++++++++..-+++ ++..|..+.- --.+-.+.-.++.-...|.+
T Consensus 166 q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a 226 (301)
T KOG2620|consen 166 QNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADA 226 (301)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 778889999999999999998655554 4455544333 33333444444444444443
No 39
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=41.04 E-value=19 Score=30.55 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhc-Cch
Q psy6111 9 KKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSL-GMA 51 (133)
Q Consensus 9 ~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aL-g~~ 51 (133)
+.|...+.+.....+.+.||+|+.+.+++..|-+.-..+| |+.
T Consensus 170 E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~ 213 (322)
T COG2984 170 EANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKV 213 (322)
T ss_pred CcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCC
Confidence 3466778899999999999999999999999988888777 654
No 40
>PTZ00491 major vault protein; Provisional
Probab=34.30 E-value=1.9e+02 Score=27.86 Aligned_cols=18 Identities=39% Similarity=0.346 Sum_probs=7.5
Q ss_pred hHHHHHHhhhHHHHHHHH
Q psy6111 60 ARIGEAEAKKDARIKEAM 77 (133)
Q Consensus 60 A~Ia~AeA~rea~I~~A~ 77 (133)
+..++|+++.++..-+++
T Consensus 716 ~a~a~a~a~aea~~ie~e 733 (850)
T PTZ00491 716 QSRAEALAEAEARLIEAE 733 (850)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 334444444444433333
No 41
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=32.91 E-value=2.2e+02 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=11.0
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q psy6111 64 EAEAKKDARIKEAMAEEEKM 83 (133)
Q Consensus 64 ~AeA~rea~I~~A~a~~ea~ 83 (133)
.|..+++..|.+|++.+...
T Consensus 256 ~Are~~~~~i~eAeayan~i 275 (419)
T PRK10930 256 AARENEQQYIREAEAYTNEV 275 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666555443
No 42
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=30.44 E-value=1.8e+02 Score=19.82 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=20.8
Q ss_pred hHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q psy6111 54 AEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFV 88 (133)
Q Consensus 54 A~v~~~A~Ia~AeA~rea~I~~A~a~~ea~~ak~~ 88 (133)
|+-....-|..|...|...+.+|..+.+.....+.
T Consensus 12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r 46 (105)
T PF03179_consen 12 AEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFR 46 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444777777777777777655555444443
No 43
>PRK14643 hypothetical protein; Provisional
Probab=30.04 E-value=90 Score=23.72 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhccceEEEeeecc
Q psy6111 6 KDRKKFSKQVFQVASSDLVNMGITVVSYTLKD 37 (133)
Q Consensus 6 ~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~d 37 (133)
+|-.....+|.+.+.|-+..+|+++.-+++..
T Consensus 2 ~~~~~~~~~l~~l~~p~~~~~G~eL~die~~~ 33 (164)
T PRK14643 2 KDFESIKFQINELVNKELEVLNLKVYEINNLK 33 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCEEEEEEEEe
Confidence 35567778999999999999999999888653
No 44
>TIGR02686 relax_trwC conjugative relaxase domain, TrwC/TraI family. This domain is in the N-terminal (relaxase) region of TrwC, a relaxase-helicase that acts in plasmid R388 conjugation. The relaxase domain has DNA cleavage and strand transfer activities. Plasmid transfer protein TraI is also a member of this domain family. Members of this family on bacterial chromosomes typically are found near other genes typical of conjugative plasmids and appear to mark integrated plasmids.
Probab=27.91 E-value=1.5e+02 Score=24.45 Aligned_cols=47 Identities=11% Similarity=0.304 Sum_probs=33.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhccceEE------EeeeccccCCchHHHhcCc
Q psy6111 2 KDIYKDRKKFSKQVFQVASSDLVNMGITVV------SYTLKDIRDDEGYLKSLGM 50 (133)
Q Consensus 2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~------s~~I~di~D~~gyi~aLg~ 50 (133)
++||+....+..--...+...|..+|++|. .|.|..|.+ .+++.+++
T Consensus 177 ~~i~~~~~~~g~~Y~~~La~~l~~lGy~~~~~g~~g~feI~Gv~~--e~i~~FS~ 229 (283)
T TIGR02686 177 EEIYKNQIYLGLLYRAKLANELKELGYQTRVYGKHGNFEIDGVPE--EVIEAFSK 229 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcEEEecCCCCceEEcCCCH--HHHHHhCc
Confidence 578888888888888888999999999996 344544432 35555543
No 45
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=27.45 E-value=1.2e+02 Score=20.41 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhc-cceEEEeee
Q psy6111 10 KFSKQVFQVASSDLVNM-GITVVSYTL 35 (133)
Q Consensus 10 ~f~~~V~e~a~~dl~~~-GL~i~s~~I 35 (133)
....+|++.+...+..| |+.+...+|
T Consensus 76 ~v~~~iq~~V~~~v~~~tg~~v~~V~V 102 (108)
T PF03780_consen 76 EVAEEIQEKVKEAVEEMTGIEVSEVNV 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCeeEEEEE
Confidence 46778899999999998 999987776
No 46
>PF11273 DUF3073: Protein of unknown function (DUF3073); InterPro: IPR021426 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.41 E-value=35 Score=22.46 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.2
Q ss_pred hhcCchHHHHHhcCcccccC
Q psy6111 113 TKSTPTIDVARRLKPYTAST 132 (133)
Q Consensus 113 ~~~A~A~~~a~~~~~~~~~~ 132 (133)
+++|....||+.||=++..|
T Consensus 4 RaKAKQTKVAReLKY~sp~t 23 (65)
T PF11273_consen 4 RAKAKQTKVARELKYSSPDT 23 (65)
T ss_pred hhHHHHHHHHHHhccCCCcC
Confidence 46777889999999887765
No 47
>KOG1533|consensus
Probab=26.33 E-value=90 Score=26.02 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=27.5
Q ss_pred HHHHHHHHhhccceEEEeeeccc---cCCchHHHhc
Q psy6111 16 FQVASSDLVNMGITVVSYTLKDI---RDDEGYLKSL 48 (133)
Q Consensus 16 ~e~a~~dl~~~GL~i~s~~I~di---~D~~gyi~aL 48 (133)
..++-.-|.++|+.+..+++-|. +||..||++|
T Consensus 117 l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~l 152 (290)
T KOG1533|consen 117 LNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSL 152 (290)
T ss_pred HHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHH
Confidence 34455678899999999999995 8999999885
No 48
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=26.32 E-value=74 Score=25.39 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcC
Q psy6111 7 DRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLG 49 (133)
Q Consensus 7 dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg 49 (133)
+.........+.+.....++|+++..+.+.+..|-...++.|.
T Consensus 140 ~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~ 182 (294)
T PF04392_consen 140 PSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALA 182 (294)
T ss_dssp TT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhh
Confidence 3444556667778888889999999999988877666666653
No 49
>KOG4234|consensus
Probab=24.98 E-value=91 Score=25.56 Aligned_cols=44 Identities=14% Similarity=0.336 Sum_probs=29.7
Q ss_pred hHHHhHHHHHHHHHHHHHH----HHhhccceEEEeeeccccCCc--hHHHhc
Q psy6111 3 DIYKDRKKFSKQVFQVASS----DLVNMGITVVSYTLKDIRDDE--GYLKSL 48 (133)
Q Consensus 3 ei~~dR~~f~~~V~e~a~~----dl~~~GL~i~s~~I~di~D~~--gyi~aL 48 (133)
.|+..++++...++..+.. -|..|||-+++|+++ .|++ +|--+|
T Consensus 214 ~i~ernEkmKee~m~kLKdlGN~iL~pFGlStdnFqmv--qd~nTGsySi~f 263 (271)
T KOG4234|consen 214 KINERNEKMKEEMMEKLKDLGNFILSPFGLSTDNFQMV--QDPNTGSYSINF 263 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccccccceeee--eCCCCCceeEEe
Confidence 4566677777777776653 356789999999884 5655 464444
No 50
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=22.13 E-value=1.8e+02 Score=18.53 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhccceEEEeeeccccC
Q psy6111 12 SKQVFQVASSDLVNMGITVVSYTLKDIRD 40 (133)
Q Consensus 12 ~~~V~e~a~~dl~~~GL~i~s~~I~di~D 40 (133)
...-...+...|...|+.+.+++|..-.+
T Consensus 53 L~~~~~~L~~~L~~~G~~~~~~~v~~~~~ 81 (85)
T PF02120_consen 53 LRQNLPELKERLQAQGLEVVNLSVSQGSS 81 (85)
T ss_dssp HHHTHHHHHHHHHTTT-EEEEEEEESS--
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEEEECCC
Confidence 34445667789999999999999876544
No 51
>PRK14633 hypothetical protein; Provisional
Probab=21.75 E-value=1.5e+02 Score=21.96 Aligned_cols=27 Identities=4% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhccceEEEeeecc
Q psy6111 11 FSKQVFQVASSDLVNMGITVVSYTLKD 37 (133)
Q Consensus 11 f~~~V~e~a~~dl~~~GL~i~s~~I~d 37 (133)
+.++|.+.+.|-+..||+++.-+.+..
T Consensus 2 ~~~~i~~lv~p~~~~~G~eL~dve~~~ 28 (150)
T PRK14633 2 LLDDLYEIVEPITADLGYILWGIEVVG 28 (150)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEEEe
Confidence 457889999999999999999998864
No 52
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=21.44 E-value=29 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=17.8
Q ss_pred cceEEEeeeccccCCchHHHhc
Q psy6111 27 GITVVSYTLKDIRDDEGYLKSL 48 (133)
Q Consensus 27 GL~i~s~~I~di~D~~gyi~aL 48 (133)
|..++..+..++.|+.+||+++
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i 22 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKI 22 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHH
Confidence 3456777888999999999986
No 53
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.62 E-value=3.7e+02 Score=20.05 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=7.7
Q ss_pred HHHhcHHHHHHhhHHHHHHh
Q psy6111 94 AKAQRDFEIKKATYDAEVET 113 (133)
Q Consensus 94 A~a~~~~~~k~Ae~~~e~~~ 113 (133)
..++.+..-.....+..++.
T Consensus 110 ~~A~~ea~~~~~~a~~~ie~ 129 (167)
T PRK08475 110 KQTKDDIENLIKSFEELMEF 129 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333333333
No 54
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.10 E-value=27 Score=26.16 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHh
Q psy6111 5 YKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMART 53 (133)
Q Consensus 5 ~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~ 53 (133)
++||..|+..+.+.= .=+++-||.|..| |..+|...+|.-..
T Consensus 69 v~d~~~fne~lLr~~------~~~PLSs~gI~~i-~g~~~Yv~FGALS~ 110 (140)
T PF09938_consen 69 VKDRAAFNEFLLRTH------KLFPLSSFGISTI-DGEDYYVAFGALSA 110 (140)
T ss_pred cCCHHHHHHHHHHcC------CCCcceeeeeeee-cCcEEEEEeeeecc
Confidence 468999999888754 3469999999999 76778888776443
Done!