Query psy6111
Match_columns 133
No_of_seqs 118 out of 358
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:54:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1win_A Flotillin 2; BAND 7 dom 99.3 9.4E-13 3.2E-17 96.1 3.1 58 1-58 85-142 (143)
2 3bk6_A PH stomatin; archaea, t 99.3 6.5E-12 2.2E-16 94.7 7.8 78 1-78 75-152 (188)
3 2rpb_A Hypothetical membrane p 97.9 7.8E-06 2.7E-10 56.2 4.3 42 1-42 71-112 (113)
4 4fvg_A Stomatin; mixed alpha-b 97.9 1.2E-05 4E-10 57.5 4.5 52 1-52 80-131 (133)
5 2zuo_A MVP, major vault protei 67.1 40 0.0014 31.0 9.9 26 23-48 628-654 (861)
6 3bk6_A PH stomatin; archaea, t 62.4 15 0.00053 26.4 5.4 42 62-103 125-166 (188)
7 2zuo_A MVP, major vault protei 61.9 32 0.0011 31.6 8.3 22 94-115 773-794 (861)
8 2k5c_A Uncharacterized protein 29.2 24 0.00082 23.6 1.6 16 2-17 34-49 (95)
9 4efa_G V-type proton ATPase su 28.0 1.2E+02 0.0041 20.9 5.1 42 49-90 11-54 (119)
10 3eip_A Protein (colicin E3 imm 16.9 46 0.0016 21.9 1.0 21 36-56 23-43 (84)
No 1
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.29 E-value=9.4e-13 Score=96.10 Aligned_cols=58 Identities=41% Similarity=0.701 Sum_probs=55.6
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHh
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR 58 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~ 58 (133)
+++++++|+.|+..|.+.+.+++.+||++|.+++|++|.+|++|+++||+++.|++++
T Consensus 85 ldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~~~ 142 (143)
T 1win_A 85 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142 (143)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcccc
Confidence 4799999999999999999999999999999999999999999999999999998765
No 2
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.29 E-value=6.5e-12 Score=94.66 Aligned_cols=78 Identities=28% Similarity=0.361 Sum_probs=71.4
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMA 78 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a 78 (133)
+++++++|+.|+..|.+.+.+.|.+||+.|++++|++|.+|++|.++|+....|+..++|.|.+|++++++.+..+++
T Consensus 75 l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 75 LDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999988888888888888887666654
No 3
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=97.94 E-value=7.8e-06 Score=56.15 Aligned_cols=42 Identities=7% Similarity=0.159 Sum_probs=39.6
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCc
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDE 42 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~ 42 (133)
+++++++|+.|+..|.+.+.+.|.+||++|.+++|++|..|.
T Consensus 71 l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~ 112 (113)
T 2rpb_A 71 LDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPK 112 (113)
T ss_dssp TTHHHHCHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCC
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCC
Confidence 478999999999999999999999999999999999998774
No 4
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=97.89 E-value=1.2e-05 Score=57.54 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=41.3
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchH
Q psy6111 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR 52 (133)
Q Consensus 1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~ 52 (133)
+++++++|+.++..|.+.+...+.+||++|.++.|++|..|..+.++|...+
T Consensus 80 ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~ 131 (133)
T 4fvg_A 80 LSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEA 131 (133)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC---------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999999988885443
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=67.14 E-value=40 Score=30.98 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=19.9
Q ss_pred HhhccceEEEeeeccccCCc-hHHHhc
Q psy6111 23 LVNMGITVVSYTLKDIRDDE-GYLKSL 48 (133)
Q Consensus 23 l~~~GL~i~s~~I~di~D~~-gyi~aL 48 (133)
+...||.|+|+-|++|..-+ ..-++|
T Consensus 628 F~~N~lvitsVDvqsvEpvDqrtrd~L 654 (861)
T 2zuo_A 628 FPQNGLVVSSVDVQSVEPVDQRTRDAL 654 (861)
T ss_dssp CTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred EccCCeEEEEEeeeeecccCHHHHHHH
Confidence 56789999999999997643 355555
No 6
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=62.39 E-value=15 Score=26.41 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcHHHHH
Q psy6111 62 IGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIK 103 (133)
Q Consensus 62 Ia~AeA~rea~I~~A~a~~ea~~ak~~ae~~IA~a~~~~~~k 103 (133)
..+|+.++++.|..|+++.++.....++...++.+...+.++
T Consensus 125 ~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~~~~l~lr 166 (188)
T 3bk6_A 125 QAEAERERRARITLAEAERQAAEKLREAAEIISEHPMALQLR 166 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 456778888899999999888777776655555544445544
No 7
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=61.94 E-value=32 Score=31.60 Aligned_cols=22 Identities=45% Similarity=0.510 Sum_probs=10.4
Q ss_pred HHHhcHHHHHHhhHHHHHHhhc
Q psy6111 94 AKAQRDFEIKKATYDAEVETKS 115 (133)
Q Consensus 94 A~a~~~~~~k~Ae~~~e~~~~~ 115 (133)
..+++++++.++.--++++..+
T Consensus 773 ~~~~~ele~~k~~~la~ie~~k 794 (861)
T 2zuo_A 773 ARAQLELEVSKAQQLANVEAKK 794 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 3445555555554444444433
No 8
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=29.18 E-value=24 Score=23.57 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=13.0
Q ss_pred hhHHHhHHHHHHHHHH
Q psy6111 2 KDIYKDRKKFSKQVFQ 17 (133)
Q Consensus 2 Eei~~dR~~f~~~V~e 17 (133)
+||++||+.|...+-+
T Consensus 34 ~ei~kDr~~Fl~~~e~ 49 (95)
T 2k5c_A 34 EEIVKDRERFLAQVEE 49 (95)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHH
Confidence 5899999999877643
No 9
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=28.01 E-value=1.2e+02 Score=20.91 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=23.0
Q ss_pred CchHhhHHHhhhH--HHHHHhhhHHHHHHHHHHHHHHHhhhhhH
Q psy6111 49 GMARTAEVKRDAR--IGEAEAKKDARIKEAMAEEEKMAARFVND 90 (133)
Q Consensus 49 g~~~~A~v~~~A~--Ia~AeA~rea~I~~A~a~~ea~~ak~~ae 90 (133)
|.+..=.+.++|. |.+|...|-..+++|..+.+.+...|..+
T Consensus 11 GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~q 54 (119)
T 4efa_G 11 GIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQ 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444434444444 66666666777777655555554444443
No 10
>3eip_A Protein (colicin E3 immunity protein); ribonuclease inhibitor, immune system; 1.80A {Escherichia coli str} SCOP: d.26.2.1 PDB: 1jch_B* 2b5u_B 1e44_A
Probab=16.87 E-value=46 Score=21.94 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=16.6
Q ss_pred ccccCCchHHHhcCchHhhHH
Q psy6111 36 KDIRDDEGYLKSLGMARTAEV 56 (133)
Q Consensus 36 ~di~D~~gyi~aLg~~~~A~v 56 (133)
+|+-|+...|++||.|.--.+
T Consensus 23 ~Dlgdd~sviE~lglp~~dnI 43 (84)
T 3eip_A 23 KDFGDDGSVMESLGVPFKDNV 43 (84)
T ss_dssp CCCTTCCHHHHTTTCCHHHHT
T ss_pred cccCCChhHHHHcCCCccccc
Confidence 577888999999999975443
Done!