RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6111
(133 letters)
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 62.9 bits (153), Expect = 7e-14
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVK 57
++ IY+DR +F+K V +VA+ D+ MGI ++S+T+KD+ D YL SLG +T+
Sbjct: 85 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPS 141
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 32.6 bits (75), Expect = 0.020
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 27 GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDAR--IGEAEAKKDARIKEAMAEEEKMA 84
GI V + +KD+ G K+ MAR AE +R+ R I AEA++ A AE+ + A
Sbjct: 101 GIKVTAVEIKDVELPAGMQKA--MARQAEAERERRARITLAEAERQA------AEKLREA 152
Query: 85 ARFVNDTEIAKAQR 98
A +++ +A R
Sbjct: 153 AEIISEHPMALQLR 166
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.38
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 57 KRDARI---GEAEAKKDARIKEAMAEE---------EKMAARFVNDTEIAKA---QRDFE 101
++ R+ A + +E ++ E++ +N+ KA Q D +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Query: 102 I 102
I
Sbjct: 153 I 153
Score = 28.2 bits (62), Expect = 0.60
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 59 DARIGEAEAKK------DARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVE 112
D E E+ + R++E A + M + KA++D E +VE
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW-----REKAKKDLEEWNQRQSEQVE 132
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 27.2 bits (61), Expect = 2.0
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 55 EVKRDARIGEAEAKKD---ARIKEAMAEEEKMAAR 86
++ D R G + +K+ M ++ + +
Sbjct: 398 GLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKK 432
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic
resolution, double layered particle, de novo,
infectious, icosah virus; HET: NAG; 3.80A {Simian
rotavirus A} PDB: 1kri_A
Length = 776
Score = 26.2 bits (57), Expect = 4.3
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 2/133 (1%)
Query: 2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSY--TLKDIRDDEGYLKSLGMARTAEVKRD 59
+ + + R++F+ ++A S L+++ + + I+ KS+ + + K+
Sbjct: 496 RQLGELREEFNALSQEIAMSQLIDLALLPLDMFSMFSGIKSTIDAAKSMATSVMKKFKKS 555
Query: 60 ARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTI 119
D+ A + + R V + A +I + + T TI
Sbjct: 556 GLANSVSTLTDSLSDAASSISRGASIRSVGSSASAWTDVSTQITDVSSSVSSISTQTSTI 615
Query: 120 DVARRLKPYTAST 132
RLK T
Sbjct: 616 SRRLRLKEMATQT 628
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 7.9
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 16/32 (50%)
Query: 101 EIKKATYDAEVETKSTPTIDVARRLKPYTAST 132
+KK ++ LK Y +
Sbjct: 21 ALKK------LQA----------SLKLYADDS 36
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 25.0 bits (54), Expect = 8.0
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 42 EGYLKSLG-MARTAEVKRDARIGE---AEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQ 97
+ + +LG + +T E + GE E K A + EK A R + +A+
Sbjct: 56 KNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTH--YALEAE 113
Query: 98 R 98
+
Sbjct: 114 K 114
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (55), Expect = 8.3
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 49 GMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKA 96
G+ E+K E + + +++A++ E + + VN A
Sbjct: 730 GLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAA 777
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 25.2 bits (54), Expect = 8.9
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 51 ARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAE 110
A A + + A + +A AE AAR + + +A+ + +AE
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Query: 111 VE 112
+E
Sbjct: 759 LE 760
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.126 0.326
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,005,372
Number of extensions: 120553
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 26
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.3 bits)